BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6818
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q11208|PARP_SARPE Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1
Length = 996
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 28/170 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
S F DGK P WFHE+CF++K RP + DI N ++R +DQE IK I
Sbjct: 39 SAFHDGKQPNWFHEQCFFQKQRPTSAGDIENFENIRFEDQERIKKAIDNCTTVISAGGSK 98
Query: 50 ----------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
IEYAKS R++CRGCE KI K +IR+ K +D++ G GG P
Sbjct: 99 KGAKRSKGENNAIKDFGIEYAKSGRASCRGCEQKILKDQIRIRKTVFDTEVGMKYGGQPL 158
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSD-GVS 142
W+H+ CF +R +L + +G+ +PGF +L+ D+ V+ LP + D GVS
Sbjct: 159 WHHVECFAQLRGELGWLDTGENLPGFQTLKSDDKADVKKALPVIKDEGVS 208
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY+KS+R++C+GC+ KI G +R++ M + G P W+H CF +
Sbjct: 9 VEYSKSSRASCKGCKNKIEAGILRIAAMVQSAFHD---GKQPNWFHEQCF----FQKQRP 61
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I F ++ +DQ+ ++ + + + +S
Sbjct: 62 TSAGDIENFENIRFEDQERIKKAIDNCTTVIS 93
>sp|P35875|PARP_DROME Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp
PE=2 SV=1
Length = 994
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQ----------EMIKSKILGN 50
S F D K P WFH+ CF+K RP ++ DI N+ +LR DQ + + S LG
Sbjct: 39 SAFHDAKVPNWFHKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGK 98
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS+RSTCRGCE KI K +R+ K YD++ G GG P W+H
Sbjct: 99 KRSKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
L CF +R +L + ASG+ +PGF SL DQ V+ +P +
Sbjct: 159 LECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPI 199
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYA++ R+TC+GC++ I+K +R++ M + +P W+H +CF + +
Sbjct: 10 EYARTGRATCKGCKSTISKDTLRIAVMVQSAFHD---AKVPNWFHKTCF----FKNQRPS 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I G+L DQK + + ++ + +S
Sbjct: 63 SVGDIQNIGNLRFADQKELTDLVENIQEVIS 93
>sp|P31669|PARP1_XENLA Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis
GN=parp1 PE=2 SV=1
Length = 998
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP FDGK P W H CFWK+ R + DI+ T LR +DQEMIK I
Sbjct: 28 SPMFDGKVPHWHHYSCFWKRARVLSQGDIYGYTELRWEDQEMIKKAIETGGAAAGAGGDS 87
Query: 48 --------LGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
L + EYAKSNRS C+GCE KI KG+IR+SK + D ++ ++ G I WYH
Sbjct: 88 KGGKGEMTLNDFAAEYAKSNRSACKGCEQKIEKGQIRISKKSVDVERPQL-GMIDRWYHP 146
Query: 98 SCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R +L+F S S Q+ GF L +D+ ++ LP++ ++G K D +
Sbjct: 147 DCFVSSREELDFLPSYSASQLKGFTILSAEDKDSLKKKLPAVKNEGKRKADEV 199
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEFSA 111
AKS R++C+ C IAK + ++ M Q M G +P W+H SCF R+
Sbjct: 1 AKSGRASCKKCGDNIAKESLGLAIMV----QSPMFDGKVPHWHHYSCFWKRARV-----L 51
Query: 112 SGKQIPGFGSLEKKDQKIVEATL 134
S I G+ L +DQ++++ +
Sbjct: 52 SQGDIYGYTELRWEDQEMIKKAI 74
>sp|P26446|PARP1_CHICK Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2
Length = 1011
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 27/162 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP FDGK P W H CFWK+ R + DI LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARIVSHTDIDGFPELRWEDQEKIKKAIETGALQEEKGGTR 100
Query: 48 --LGN---------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
+G EYAKSNRSTC+GCE KI KG+IR+SK ++ ++ G I WYH
Sbjct: 101 KEVGKAEKSLTDFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQL-GMIDNWYH 159
Query: 97 LSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPS 136
CF + R +L F + Q+ GF L+ +D++ ++ LP+
Sbjct: 160 PDCFVSRRAELGFLPAYGATQLLGFSILKAEDKETLKKQLPA 201
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLALMV----QSPMFDGKVPHWHHYSCFWKRARI---- 63
Query: 110 SASGKQIPGFGSLEKKDQKIVEATLPS 136
S I GF L +DQ+ ++ + +
Sbjct: 64 -VSHTDIDGFPELRWEDQEKIKKAIET 89
>sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2
SV=3
Length = 1013
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKSEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D+++++ LP + S+G K D +
Sbjct: 160 PTCFVKNREELGFRPEYSASQLKGFSLLSAEDKEVLKKQLPGVKSEGKRKGDEV 213
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1
SV=4
Length = 1014
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + ++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDTEVDGFSELRWDDQQKVKKTAEAGGVAGKGQH 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GGGGKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ S+G K D +
Sbjct: 160 PTCFVKNRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAVKSEGKRKCDEV 213
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ + ++ GF L DQ+ V+ T
Sbjct: 64 IRQPDT--EVDGFSELRWDDQQKVKKT 88
>sp|P09874|PARP1_HUMAN Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4
Length = 1014
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>sp|P11103|PARP1_MOUSE Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3
Length = 1013
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGQSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFAAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L ++YAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVQYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GQSIRHPDV--EVDGFSELRWDDQQKVKKT 88
>sp|P18493|PARP1_BOVIN Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2
Length = 1016
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 38/170 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKN----RPKALLDIHNVTSLRHQDQEMIK--------SKIL 48
SP FDGK P W+H CFWK P +++ + LR DQ+ IK + +
Sbjct: 41 SPMFDGKIPHWYHLSCFWKVGFSIWHPD--VEVEGFSELRWDDQQTIKKMAETGGRTDVS 98
Query: 49 GNIE-----------------YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
G + YAKSNRSTC+ C KI KG++R+SK D+ ++ G +
Sbjct: 99 GKGQDGVGSKTEKTLIDFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQL-GMV 157
Query: 92 PEWYHLSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
WYH CF R +L EFSA+ + GF L +DQ+ ++ LP++
Sbjct: 158 DCWYHPKCFVQKREELGFRPEFSAT--HLMGFSVLTAEDQETLKKQLPAI 205
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
L +EYAKS R++C+ C+ I K IR M + + G IP WYHLSCF V +
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIR---MAFMVESPMFDGKIPHWYHLSCFWKVGFSI 64
Query: 108 EFSASGKQIPGFGSLEKKDQKIVE 131
++ GF L DQ+ ++
Sbjct: 65 WHPDV--EVEGFSELRWDDQQTIK 86
>sp|Q9ZSV1|PARP1_MAIZE Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1
Length = 980
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 4 FDGKTPKWFHEEC-FWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C F KKN+ K++ D+ + +LR DQE I++ +
Sbjct: 43 FDGFMPMWNHARCIFSKKNQIKSVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAAPPE 102
Query: 50 --NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
IE A S R++CR C KI KG +R+S +S+ K GIP WYH +CF ++
Sbjct: 103 KCTIEIAPSARTSCRRCSEKITKGSVRLS-AKLESEGPK---GIP-WYHANCF----FEV 153
Query: 108 EFSASGKQIPGFGSLEKKDQKIV 130
SA+ ++ G+ +L +D++ +
Sbjct: 154 SPSATVEKFSGWDTLSDEDKRTM 176
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C + IAK ++R+ KM S + G +P W H C + + ++
Sbjct: 11 EYAKSGRASCKSCRSPIAKDQLRLGKMVQAS---QFDGFMPMWNHARCIFSKKNQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
S + G +L DQ+ + + S S G S T A
Sbjct: 65 SVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAA 99
>sp|Q7EYV7|PARP1_ORYSJ Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica
GN=PARP1 PE=2 SV=1
Length = 977
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 4 FDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C KKN+ K++ D+ + +LR DQE I++ +
Sbjct: 43 FDGLMPMWNHASCILSKKNQIKSVDDVEGIDTLRWDDQEKIRNYVGSAPATASSAAAISD 102
Query: 50 --NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
IE AKS R++CR C KI KG +RVS K+ G WYH SCF L++
Sbjct: 103 KCTIEVAKSARTSCRRCGEKIKKGTVRVS--------SKLEG--QGWYHASCF----LEM 148
Query: 108 EFSASGKQIPGFGSLEKKDQKIV 130
+A+ + G+ L +D++ V
Sbjct: 149 SPAATVENFSGWEILSHEDKRAV 171
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS RS+C+ C + I K ++R+ KM + G +P W H SC + + ++
Sbjct: 11 EYAKSGRSSCKSCRSPIGKDQLRLGKM---VQATQFDGLMPMWNHASCILSKKNQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIV 130
S + G +L DQ+ +
Sbjct: 65 SVDDVEGIDTLRWDDQEKI 83
>sp|Q9ZP54|PARP1_ARATH Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1
PE=1 SV=2
Length = 983
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 40/162 (24%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIK--------------- 44
S FDG P W H C KK + K++ D+ + SLR +DQ+ I+
Sbjct: 40 STHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIRKYVESGAGSNTSTST 99
Query: 45 ----------SKILGNIEYAKSNRSTCRGCEAKIAKGEIRV-SKMNYDSDQGKMIGGIPE 93
+K+ IE ++++R+ CR C KI KGE+R+ SK ++G M
Sbjct: 100 GTSTSSTANNAKLEYGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM------ 153
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLP 135
W+H CF L++ S + + G+ S+ DQ EA LP
Sbjct: 154 WHHAKCF----LEMSSSTELESLSGWRSIPDSDQ---EALLP 188
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RS+C+ C++ I K R+ K+ + G +P W H SC ++
Sbjct: 11 EYAKSSRSSCKTCKSVINKENFRLGKLVQST---HFDGIMPMWNHASCILKKTKQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPS 136
S + G SL +DQ+ + + S
Sbjct: 65 SVDDVEGIESLRWEDQQKIRKYVES 89
>sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP
PE=1 SV=1
Length = 694
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RSTC+ C IA E+R+ + + M +W+HL CF +D +
Sbjct: 331 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDM----KQWHHLGCFP---VDSDPIV 383
Query: 112 SGKQIPGFGSLEKKDQ 127
S + I GF L+ DQ
Sbjct: 384 SVEDIGGFSELQSGDQ 399
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRS+CR C KIA +R+ ++ +G+ + W+H CF D E A
Sbjct: 53 EYAKSNRSSCRSCSNKIAVKSLRLGLIS----KGRGGVDMTRWHHFDCFPT---DSESIA 105
Query: 112 SGKQIPGFGSLEKKDQ----KIVE 131
S I G +LEK+DQ K+VE
Sbjct: 106 SVDDIQGLSALEKEDQDALTKLVE 129
>sp|Q9N4H4|PME1_CAEEL Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditis elegans
GN=pme-1 PE=2 SV=1
Length = 945
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 42/151 (27%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTS---LRHQDQEMIKSK---------- 46
S FFDG WFH CFW K R + ++I ++ LR +DQE ++ +
Sbjct: 42 STFFDGNMDSWFHYNCFWIKMIRGRDDINISSIRGVDWLRWEDQEKLRQEIQHFKTASPP 101
Query: 47 -----------ILGNIEYAK--SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
IL I+ K SNR C C +GEI+ ++GK
Sbjct: 102 TLTPLCSTTTVILSTIKTEKSLSNRGKCGKCGQNFERGEIKA------HNKGKA------ 149
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEK 124
H CF D + S + + IPG+ E+
Sbjct: 150 -NHFKCF-LQEFD-KISGTVEDIPGWADYEE 177
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
IEYAKS RS C+ C+ IA ++R+S MN S G + W+H +CF
Sbjct: 12 IEYAKSGRSNCKTCKKNIALDQLRMS-MNRPST--FFDGNMDSWFHYNCF 58
>sp|P49916|DNLI3_HUMAN DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2
Length = 1009
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>sp|P97386|DNLI3_MOUSE DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=2
Length = 1015
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana
GN=At5g16730 PE=1 SV=1
Length = 853
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 22 RPKALLDIHNVTSLRHQ----DQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSK 77
R KALLD S R + D EM+ +K+ I K + + RG EA++ + E+ V K
Sbjct: 247 RLKALLD-----STREKTAISDNEMV-AKLEDEIVVLKRDLESARGFEAEVKEKEMIVEK 300
Query: 78 MNYDSDQGKM 87
+N D + KM
Sbjct: 301 LNVDLEAAKM 310
>sp|P09353|SR3A_PHYPO Spherulin-3A OS=Physarum polycephalum PE=1 SV=1
Length = 103
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 59 STCRGCEAKIAKGEIRVSK-MNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQI- 116
S C+G AKGE+ + K +N+ D K+ G + ++ +S N V ++ + K
Sbjct: 2 SVCKGVSGNPAKGEVFLYKHVNFQGDSWKVTGNVYDFRSVSGLNDVVSSVKVGPNTKAFI 61
Query: 117 -------PGFGSLEKKDQKIVEATLPSLSDGVS 142
F LE+ Q + + T +L+D +S
Sbjct: 62 FKDDRFNGNFIRLEESSQ-VTDLTTRNLNDAIS 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,962,065
Number of Sequences: 539616
Number of extensions: 2168120
Number of successful extensions: 5238
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5127
Number of HSP's gapped (non-prelim): 59
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)