Query psy6818
Match_columns 162
No_of_seqs 129 out of 350
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:10:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av1_A Poly [ADP-ribose] polym 100.0 2.1E-45 7.1E-50 300.7 -1.1 135 1-136 62-222 (223)
2 1uw0_A DNA ligase III; DNA rep 100.0 2.8E-30 9.6E-35 192.5 6.6 102 50-152 7-116 (117)
3 1v9x_A Poly (ADP-ribose) polym 100.0 2E-29 6.7E-34 187.3 7.1 86 50-141 12-97 (114)
4 2dmj_A Poly (ADP-ribose) polym 100.0 6.1E-29 2.1E-33 182.4 7.0 90 50-144 17-106 (106)
5 3odc_A Poly [ADP-ribose] polym 100.0 1.7E-29 5.6E-34 186.9 2.5 89 50-139 11-101 (111)
6 2cs2_A Poly [ADP-ribose] polym 99.9 1.5E-28 5E-33 187.2 6.1 89 50-139 19-109 (134)
7 3od8_A Poly [ADP-ribose] polym 99.9 1.8E-28 6E-33 182.6 3.5 84 50-138 30-113 (116)
8 4av1_A Poly [ADP-ribose] polym 99.9 7.8E-26 2.7E-30 184.8 3.6 85 50-139 31-115 (223)
9 1v9x_A Poly (ADP-ribose) polym 99.6 6E-16 2E-20 114.7 3.1 48 1-48 43-91 (114)
10 3od8_A Poly [ADP-ribose] polym 99.5 7.6E-16 2.6E-20 114.4 -0.7 48 1-48 61-110 (116)
11 2dmj_A Poly (ADP-ribose) polym 99.5 5.6E-15 1.9E-19 108.0 0.9 48 1-48 48-97 (106)
12 1uw0_A DNA ligase III; DNA rep 99.4 2.5E-14 8.4E-19 106.3 1.6 48 1-48 38-95 (117)
13 3odc_A Poly [ADP-ribose] polym 99.4 5.9E-15 2E-19 108.8 -2.5 45 4-48 47-97 (111)
14 2cs2_A Poly [ADP-ribose] polym 99.3 8.4E-14 2.9E-18 105.7 0.1 46 3-48 54-105 (134)
15 2cur_A Skeletal muscle LIM-pro 86.0 0.81 2.8E-05 28.9 3.6 32 56-102 3-34 (69)
16 2cup_A Skeletal muscle LIM-pro 85.1 0.54 1.8E-05 31.9 2.6 37 52-101 60-96 (101)
17 2d8x_A Protein pinch; LIM doma 84.7 1.1 3.6E-05 28.4 3.7 32 56-102 3-34 (70)
18 3f6q_B LIM and senescent cell 84.1 0.81 2.8E-05 28.7 3.0 35 54-101 7-41 (72)
19 1wyh_A SLIM 2, skeletal muscle 84.0 0.8 2.7E-05 29.0 2.9 32 58-102 5-36 (72)
20 1x4l_A Skeletal muscle LIM-pro 83.8 0.63 2.2E-05 29.7 2.3 35 55-102 2-38 (72)
21 1x61_A Thyroid receptor intera 83.5 0.66 2.2E-05 29.5 2.3 34 56-102 3-36 (72)
22 1x63_A Skeletal muscle LIM-pro 83.4 0.91 3.1E-05 29.6 3.1 37 53-102 10-46 (82)
23 2cup_A Skeletal muscle LIM-pro 82.8 0.84 2.9E-05 30.9 2.8 36 54-102 1-36 (101)
24 2d8y_A Eplin protein; LIM doma 81.3 1.6 5.5E-05 29.1 3.7 37 52-102 9-45 (91)
25 1x4k_A Skeletal muscle LIM-pro 80.9 0.92 3.2E-05 28.7 2.3 32 58-102 5-36 (72)
26 2egq_A FHL1 protein; LIM domai 78.7 1.5 5E-05 28.2 2.7 37 53-102 10-49 (77)
27 1x62_A C-terminal LIM domain p 78.7 1.5 5.2E-05 28.5 2.9 30 57-101 14-43 (79)
28 2dj7_A Actin-binding LIM prote 78.0 2.2 7.5E-05 28.0 3.5 32 57-102 14-45 (80)
29 2l4z_A DNA endonuclease RBBP8, 77.9 2.3 7.8E-05 30.5 3.9 31 58-102 61-91 (123)
30 1x3h_A Leupaxin; paxillin fami 77.8 2.4 8.1E-05 27.4 3.6 35 53-102 10-44 (80)
31 2d8z_A Four and A half LIM dom 76.3 1.7 5.7E-05 27.4 2.4 31 57-102 4-34 (70)
32 1a7i_A QCRP2 (LIM1); LIM domai 76.1 2.6 8.9E-05 27.3 3.5 33 56-102 5-37 (81)
33 2cuq_A Four and A half LIM dom 75.8 1.9 6.4E-05 27.8 2.7 19 53-71 10-28 (80)
34 2dar_A PDZ and LIM domain prot 75.8 2.3 8E-05 28.3 3.2 34 54-102 21-54 (90)
35 1x64_A Alpha-actinin-2 associa 75.0 1.9 6.6E-05 28.6 2.6 31 57-102 24-54 (89)
36 2cu8_A Cysteine-rich protein 2 74.9 3.1 0.00011 26.6 3.6 32 57-102 8-39 (76)
37 1nyp_A Pinch protein; LIM doma 73.6 1.9 6.4E-05 26.8 2.1 30 58-102 5-34 (66)
38 1g47_A Pinch protein; LIM doma 73.6 1.5 5.3E-05 28.0 1.8 33 57-102 10-42 (77)
39 1v6g_A Actin binding LIM prote 73.3 3.2 0.00011 26.9 3.3 35 53-102 10-44 (81)
40 2ehe_A Four and A half LIM dom 73.2 1.7 5.8E-05 28.3 1.9 37 53-102 10-46 (82)
41 2co8_A NEDD9 interacting prote 73.1 1.5 5.1E-05 28.9 1.6 33 56-102 13-45 (82)
42 2vpb_A Hpygo1, pygopus homolog 72.8 1.5 5.1E-05 28.4 1.5 35 58-102 8-42 (65)
43 2xjy_A Rhombotin-2; oncoprotei 72.0 3.2 0.00011 29.3 3.3 31 58-102 2-32 (131)
44 2dlo_A Thyroid receptor-intera 71.2 4.3 0.00015 26.2 3.6 34 53-102 11-44 (81)
45 1iml_A CRIP, cysteine rich int 70.6 3.3 0.00011 26.5 2.9 29 60-102 2-30 (76)
46 1x68_A FHL5 protein; four-and- 70.4 3.2 0.00011 26.6 2.8 31 59-102 6-38 (76)
47 1wig_A KIAA1808 protein; LIM d 70.2 1.5 5.2E-05 28.2 1.1 12 59-70 6-17 (73)
48 2cor_A Pinch protein; LIM doma 69.4 1.9 6.5E-05 28.1 1.5 32 56-102 13-44 (79)
49 2rgt_A Fusion of LIM/homeobox 68.6 2.7 9.1E-05 31.3 2.3 32 58-102 65-96 (169)
50 2l3k_A Rhombotin-2, linker, LI 67.7 2.1 7.1E-05 30.3 1.5 31 59-102 9-39 (123)
51 1m3v_A FLIN4, fusion of the LI 67.7 2.7 9.1E-05 29.7 2.1 16 57-72 4-19 (122)
52 2iyb_E Testin, TESS, TES; LIM 64.2 3.3 0.00011 25.8 1.8 31 59-102 3-35 (65)
53 2kgg_A Histone demethylase jar 63.7 2.9 9.8E-05 25.6 1.4 12 6-17 23-34 (52)
54 1j2o_A FLIN2, fusion of rhombo 63.3 4.1 0.00014 28.3 2.3 31 58-102 3-33 (114)
55 2rsd_A E3 SUMO-protein ligase 62.0 3.1 0.00011 26.8 1.4 13 5-17 28-41 (68)
56 3cqx_C BAG family molecular ch 60.7 1.6 5.5E-05 30.3 -0.2 14 36-49 62-75 (88)
57 2g6q_A Inhibitor of growth pro 60.3 2.6 8.9E-05 27.0 0.8 11 8-18 32-43 (62)
58 2jtn_A LIM domain-binding prot 58.2 8.2 0.00028 28.9 3.4 33 55-101 57-89 (182)
59 1x6a_A LIMK-2, LIM domain kina 57.9 4.4 0.00015 26.1 1.6 17 53-69 10-26 (81)
60 2jtn_A LIM domain-binding prot 57.2 2.4 8.1E-05 32.0 0.2 37 53-102 114-150 (182)
61 3c6w_A P28ING5, inhibitor of g 55.2 3.6 0.00012 26.0 0.8 11 8-18 30-41 (59)
62 2rgt_A Fusion of LIM/homeobox 54.8 7.3 0.00025 28.8 2.5 17 56-72 4-20 (169)
63 2xb1_A Pygopus homolog 2, B-ce 53.9 5 0.00017 28.2 1.4 13 5-17 23-35 (105)
64 1wen_A Inhibitor of growth fam 52.0 4.1 0.00014 26.7 0.6 11 8-18 37-48 (71)
65 1rut_X Flinc4, fusion protein 50.7 6.5 0.00022 29.7 1.7 29 60-101 71-99 (188)
66 2jmi_A Protein YNG1, ING1 homo 50.7 4.6 0.00016 27.9 0.8 11 8-18 47-58 (90)
67 2vnf_A ING 4, P29ING4, inhibit 50.5 4.7 0.00016 25.4 0.8 11 8-18 31-42 (60)
68 1we9_A PHD finger family prote 49.5 5.3 0.00018 25.1 0.9 10 8-17 28-37 (64)
69 1b8t_A Protein (CRP1); LIM dom 47.3 12 0.00041 28.2 2.8 32 56-101 5-36 (192)
70 2puy_A PHD finger protein 21A; 47.3 47 0.0016 20.3 5.6 31 57-102 4-34 (60)
71 2yql_A PHD finger protein 21A; 45.4 17 0.00058 22.2 2.8 32 56-102 7-38 (56)
72 1weu_A Inhibitor of growth fam 43.8 5.5 0.00019 27.5 0.3 11 8-18 57-68 (91)
73 2xqn_T Testin, TESS; metal-bin 43.2 9.3 0.00032 26.6 1.4 34 56-102 61-96 (126)
74 3o7a_A PHD finger protein 13 v 42.1 7.7 0.00026 23.5 0.7 11 8-18 24-34 (52)
75 1xwh_A Autoimmune regulator; P 40.7 20 0.00067 22.7 2.6 34 54-102 4-37 (66)
76 2k16_A Transcription initiatio 39.6 5.5 0.00019 25.8 -0.2 11 8-18 39-49 (75)
77 1f62_A Transcription factor WS 39.1 11 0.00037 22.5 1.1 32 59-102 1-32 (51)
78 3o36_A Transcription intermedi 38.9 80 0.0027 23.5 6.3 23 117-139 73-95 (184)
79 1wem_A Death associated transc 38.9 5.9 0.0002 25.8 -0.2 10 8-17 36-45 (76)
80 1wee_A PHD finger family prote 38.6 9 0.00031 24.7 0.7 11 8-18 37-47 (72)
81 1wew_A DNA-binding family prot 36.0 7.8 0.00027 25.5 0.1 12 7-18 37-48 (78)
82 2lv9_A Histone-lysine N-methyl 35.9 13 0.00045 25.6 1.2 11 8-18 48-58 (98)
83 3vi8_A Peroxisome proliferator 35.4 19 0.00064 28.9 2.3 38 92-132 76-115 (273)
84 1x4i_A Inhibitor of growth pro 34.4 6.5 0.00022 25.6 -0.6 9 10-18 30-38 (70)
85 3o70_A PHD finger protein 13; 32.6 13 0.00045 23.9 0.7 11 8-18 39-49 (68)
86 2yt5_A Metal-response element- 32.2 43 0.0015 20.7 3.2 36 55-102 3-40 (66)
87 3v3e_B Nuclear receptor subfam 32.0 24 0.00081 28.0 2.3 20 113-132 72-91 (257)
88 1wep_A PHF8; structural genomi 31.3 9.3 0.00032 25.1 -0.2 10 8-17 33-42 (79)
89 3mmy_B Nuclear pore complex pr 30.7 4.3 0.00015 25.9 -1.8 12 31-42 42-53 (56)
90 3kqi_A GRC5, PHD finger protei 30.2 9.3 0.00032 24.9 -0.3 10 8-17 31-40 (75)
91 2djr_A Zinc finger BED domain- 29.2 18 0.00062 24.1 1.0 30 56-97 26-55 (76)
92 3gyt_A Nuclear hormone recepto 29.1 22 0.00076 28.2 1.7 20 113-132 61-80 (244)
93 1pdu_A DHR38, nuclear hormone 28.5 26 0.00089 27.4 2.0 21 113-133 67-87 (244)
94 1fcy_A RAR-gamma-1, retinoic a 26.7 34 0.0012 26.3 2.3 21 113-133 64-84 (236)
95 2lri_C Autoimmune regulator; Z 26.6 19 0.00066 23.1 0.7 34 54-102 8-41 (66)
96 2nxx_A Ultraspiracle (USP, NR2 26.4 36 0.0012 26.1 2.4 21 113-133 57-77 (235)
97 1osh_A BIle acid receptor; nuc 25.9 33 0.0011 26.2 2.2 20 113-132 62-81 (232)
98 3l0l_A Nuclear receptor ROR-ga 25.9 34 0.0012 26.7 2.2 20 113-132 76-95 (248)
99 3dzy_D Peroxisome proliferator 25.8 34 0.0011 29.2 2.3 20 113-132 242-261 (419)
100 3u9q_A Peroxisome proliferator 25.2 36 0.0012 27.1 2.3 20 113-132 93-112 (269)
101 3cqv_A Nuclear receptor subfam 25.1 28 0.00096 26.0 1.5 21 113-133 40-60 (199)
102 2e2r_A Estrogen-related recept 24.8 33 0.0011 26.6 2.0 21 113-133 68-88 (244)
103 3cjw_A COUP transcription fact 24.7 34 0.0012 26.4 2.0 21 113-133 57-77 (244)
104 3ltx_A Estrogen receptor; cons 24.1 33 0.0011 26.6 1.8 21 113-133 56-76 (243)
105 2ri7_A Nucleosome-remodeling f 24.1 17 0.00057 27.0 0.1 11 7-17 28-38 (174)
106 2iz2_A FTZ-F1 alpha, nuclear h 23.5 45 0.0015 25.9 2.5 21 113-133 66-86 (243)
107 1n83_A Nuclear receptor ROR-al 23.3 46 0.0016 26.4 2.6 21 113-133 85-105 (270)
108 3n00_A REV-ERBA-alpha; reverba 23.2 39 0.0013 26.5 2.1 20 113-132 85-104 (245)
109 3k6p_A Steroid hormone recepto 22.9 41 0.0014 26.2 2.2 20 113-132 68-87 (248)
110 2p1t_A Retinoic acid receptor 22.9 41 0.0014 25.7 2.2 21 113-133 61-81 (240)
111 3b0t_A Vitamin D3 receptor; nu 22.8 40 0.0014 26.2 2.1 21 113-133 76-96 (254)
112 4gne_A Histone-lysine N-methyl 22.5 29 0.001 24.4 1.1 12 7-18 34-45 (107)
113 2nxx_E Ecdysone receptor (ECR, 22.5 45 0.0015 25.9 2.3 21 113-133 72-92 (248)
114 2e6r_A Jumonji/ARID domain-con 22.2 49 0.0017 22.4 2.2 32 59-102 17-48 (92)
115 1lbd_A RXR_LBD, retinoid X rec 22.1 41 0.0014 26.5 2.1 21 113-133 103-123 (282)
116 1xpc_A Estrogen receptor; nucl 21.9 45 0.0015 25.8 2.2 21 113-133 55-75 (248)
117 3kmr_A Retinoic acid receptor 21.7 44 0.0015 26.4 2.2 20 113-132 88-107 (266)
118 1ymt_A Steroidogenic factor 1; 21.6 43 0.0015 25.8 2.1 21 113-133 65-85 (246)
119 3oll_A Estrogen receptor beta; 21.4 49 0.0017 25.4 2.3 20 113-132 53-72 (240)
120 2hc4_A Vitamin D receptor; alp 21.3 48 0.0016 26.8 2.3 20 113-132 122-141 (302)
121 2r40_D Ecdysone receptor, 20-h 21.2 44 0.0015 26.3 2.1 21 113-133 88-108 (266)
122 3p0u_A Nuclear receptor subfam 21.1 43 0.0015 26.1 2.0 21 113-133 54-74 (249)
123 1l2j_A Estrogen receptor beta; 21.0 47 0.0016 26.3 2.2 21 113-133 79-99 (271)
124 3plz_A FTZ-F1 related protein; 20.9 48 0.0016 26.0 2.2 20 113-132 76-95 (257)
125 1ovl_A Orphan nuclear receptor 20.9 50 0.0017 25.9 2.3 21 113-133 94-114 (271)
126 2l5u_A Chromodomain-helicase-D 20.9 20 0.00069 22.4 -0.0 12 8-19 29-40 (61)
127 1g2n_A Ultraspiracle protein; 20.2 48 0.0016 25.9 2.1 21 113-133 62-82 (264)
No 1
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=100.00 E-value=2.1e-45 Score=300.70 Aligned_cols=135 Identities=42% Similarity=0.831 Sum_probs=43.1
Q ss_pred CCCCCCCCCceeeeccccCCCCC--CCCCCcCCCcCCChhhHHHHHHhhc-c---------------------ceeeecC
Q psy6818 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIKSKIL-G---------------------NIEYAKS 56 (162)
Q Consensus 1 s~~fdG~~~~W~H~~Cff~k~~~--~~~~~i~g~~~Lrw~DQ~~i~~~i~-~---------------------~vEYAkS 56 (162)
|++|||.|++|||++|||.++.. .++++|+||++|+||||++|+++|+ | .||||||
T Consensus 62 ~~~~dG~~~~W~H~~Cf~~~~~~~~~~~~~I~G~~~L~~eDQekIk~~ie~g~~~~~~~~~~~~~~~~~~~~y~vEYAKS 141 (223)
T 4av1_A 62 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQDGIGSKAEKTLGDFAAEYAKS 141 (223)
T ss_dssp ETTTTEEEEEEEEHHHHTTSCCCCSCHHHHEETTTSSCHHHHHHHHHHHHC-----------------------------
T ss_pred CCCCCCCCceeEChhhhhhhhcccCCCHHHCCChhHCCHHHHHHHHHHHHhCCCCCccCCcccccccccccceEEEEecc
Confidence 57899999999999999997644 4678999999999999999999994 1 8999999
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccccccccccC--CCCCCCCCCcCCCHHHHHHHHHHh
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS--ASGKQIPGFGSLEKKDQKIVEATL 134 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~~--~~~e~I~Gf~~L~~eDQ~~Ik~~~ 134 (162)
|||+|++|+++|.||+||||+++++++.+ ++|.++.|||++||++.+..+++. .++++|+||++|+++||++|+++|
T Consensus 142 ~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~-~~G~~~~W~H~~Cf~~~~~~l~~~~~~~~~~l~Gf~~L~~eDQ~~ikk~i 220 (223)
T 4av1_A 142 NRSTCKGCMEKIEKGQVRLSKKMVDPEKP-QLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQL 220 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccccCCccCCCCeEEeeeecCcccc-cCCCcceeEChhhhhchhhhcccCCCCChHHCCChHHCCHHHHHHHHHhc
Confidence 99999999999999999999999887652 357789999999999987655432 268999999999999999999998
Q ss_pred hc
Q psy6818 135 PS 136 (162)
Q Consensus 135 ~~ 136 (162)
++
T Consensus 221 ~~ 222 (223)
T 4av1_A 221 PG 222 (223)
T ss_dssp --
T ss_pred cC
Confidence 65
No 2
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=99.96 E-value=2.8e-30 Score=192.53 Aligned_cols=102 Identities=25% Similarity=0.470 Sum_probs=84.4
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcccc----ccccccCCCCCCCCCCcCCCHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV----RLDLEFSASGKQIPGFGSLEKK 125 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~----~~~~~~~~~~e~I~Gf~~L~~e 125 (162)
.|||||||||+|++|+++|.||+||||+++++++.+ .+|.++.|||++||+.. +.+++.+.++++|+||++|+++
T Consensus 7 ~vEYAkSgRA~Ck~C~~kI~KgeLRiG~~v~~~~~~-~~g~~~~W~H~~Cf~~k~~~~r~~~~~~~~~~~i~G~~~L~~e 85 (117)
T 1uw0_A 7 CVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSE-SGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDN 85 (117)
T ss_dssp EEEECCSSCEECTTSSCEECTTCEEEEEEEECTTCS-SCCEECCBCCHHHHHHHHHHSCSSSCCSCTTSSSBSTTTSCHH
T ss_pred EEEEeCCCCccchhhCcccCCCCeEEEEEecccccc-CCCCCCeeECcccchhHHhhhhhhccCCCChHHCcChHHCCHH
Confidence 699999999999999999999999999999887642 14668999999999953 4444555588999999999999
Q ss_pred HHHHHHHHhhccCCC----CCCcccccccee
Q psy6818 126 DQKIVEATLPSLSDG----VSKTDAISHFLL 152 (162)
Q Consensus 126 DQ~~Ik~~~~~~~~~----~~~~~~~~~~~~ 152 (162)
||++|+++|++++.. ++|++..+.+++
T Consensus 86 DQ~~I~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (117)
T 1uw0_A 86 EKEQITQHIADLSSKAAGTPKKKAVVQAKLT 116 (117)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCSCCCCCCCC
T ss_pred HHHHHHHHHHHhhccCCCCCccccccccccC
Confidence 999999999888664 455656666553
No 3
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.96 E-value=2e-29 Score=187.31 Aligned_cols=86 Identities=30% Similarity=0.486 Sum_probs=76.8
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccccccccccCCCCCCCCCCcCCCHHHHHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKI 129 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~~~~~e~I~Gf~~L~~eDQ~~ 129 (162)
.|||||||||+|++|+++|+||+||||+++++++. .|.++.|||+.||++.+..+ .++++|+||++|+++||++
T Consensus 12 ~vEYAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~---dG~~~~W~H~~Cf~~~~~~i---~~~~~I~G~~~L~~eDQ~~ 85 (114)
T 1v9x_A 12 RAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHF---DGIMPMWNHASCILKKTKQI---KSVDDVEGIESLRWEDQQK 85 (114)
T ss_dssp EEEECSCSCCBCSSSCCBCCSSSEEEEECCCCSSS---SCCCCEEEEHHHHHTSSSCC---SCGGGEETTTTSCHHHHHH
T ss_pred EEEEeCCCCCCchhhCCccCCCCEEEEEEecCccc---CCCcceeECccccchhhccC---CChHHCCChHHCCHHHHHH
Confidence 79999999999999999999999999999987652 47789999999999876543 3789999999999999999
Q ss_pred HHHHhhccCCCC
Q psy6818 130 VEATLPSLSDGV 141 (162)
Q Consensus 130 Ik~~~~~~~~~~ 141 (162)
|+++|++....+
T Consensus 86 I~~~i~~~~~~~ 97 (114)
T 1v9x_A 86 IRKYVESGAGSN 97 (114)
T ss_dssp HHHHHSSCSSST
T ss_pred HHHHHHHcCCCC
Confidence 999999988754
No 4
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=99.95 E-value=6.1e-29 Score=182.40 Aligned_cols=90 Identities=33% Similarity=0.622 Sum_probs=77.9
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccccccccccCCCCCCCCCCcCCCHHHHHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKI 129 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~~~~~e~I~Gf~~L~~eDQ~~ 129 (162)
.|||||||||+|++|+++|+||+||||++++++. ++|.++.|||+.||++...... .+.++|+||++|+++||++
T Consensus 17 ~vEyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~---~~g~~~~W~H~~Cf~~~~~~~~--~~~~~i~G~~~L~~eDq~~ 91 (106)
T 2dmj_A 17 RVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPM---FDGKVPHWYHFSCFWKVGHSIR--HPDVEVDGFSELRWDDQQK 91 (106)
T ss_dssp ECEECCSSCCBCSSSCCBCCTTCEEEEEEEEETT---TTEEEEEEEETTHHHHTTCCCS--CTTTSEETTTTSCHHHHHH
T ss_pred EEEEeCCCCCcchhhCCccCCCCEEEEEEecCCC---CCCCcCEeECcCccchhhccCC--CChhhCCChHHCCHHHHHH
Confidence 7999999999999999999999999999998765 2466899999999998643222 2568999999999999999
Q ss_pred HHHHhhccCCCCCCc
Q psy6818 130 VEATLPSLSDGVSKT 144 (162)
Q Consensus 130 Ik~~~~~~~~~~~~~ 144 (162)
|+++|+....+++|.
T Consensus 92 i~~~~e~g~~~p~~~ 106 (106)
T 2dmj_A 92 VKKTAEAGGSGPSSG 106 (106)
T ss_dssp HHHHHHHCSSCCCCC
T ss_pred HHHHHHhCCCCCCCC
Confidence 999999988887763
No 5
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=99.95 E-value=1.7e-29 Score=186.94 Aligned_cols=89 Identities=43% Similarity=0.779 Sum_probs=74.4
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcccccccccc--CCCCCCCCCCcCCCHHHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQ 127 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~--~~~~e~I~Gf~~L~~eDQ 127 (162)
.|||||||||+|++|+++|+||+||||+++.+++.+ ++|.++.|||++||++.+..+++ ..++++|+||++|+++||
T Consensus 11 ~vEyAkS~Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~-~~G~~~~W~H~~Cf~~~~~~l~~~~~~~~~~I~Gf~~L~~eDQ 89 (111)
T 3odc_A 11 AAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKP-QLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDK 89 (111)
T ss_dssp EEEECSSSCCBCTTTCCBCCTTCEEEEEEEEETTEE-EEEEEEEEECHHHHHHTHHHHTCCTTTGGGGEETGGGSCHHHH
T ss_pred eEEEeecCCccccccCCCccCCceEEeEEecCcccc-CCCCcceeEChhhccchhhhcccCCCCCHHhCCChHHCCHHHH
Confidence 799999999999999999999999999999888642 35668999999999987643322 126789999999999999
Q ss_pred HHHHHHhhccCC
Q psy6818 128 KIVEATLPSLSD 139 (162)
Q Consensus 128 ~~Ik~~~~~~~~ 139 (162)
++|+++|++++.
T Consensus 90 e~Ikk~i~~~~~ 101 (111)
T 3odc_A 90 EALKKQLPGVKS 101 (111)
T ss_dssp HHHHHHSCC---
T ss_pred HHHHHHHHhhcc
Confidence 999999987754
No 6
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=187.20 Aligned_cols=89 Identities=43% Similarity=0.779 Sum_probs=77.5
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcccccccccc--CCCCCCCCCCcCCCHHHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQ 127 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~--~~~~e~I~Gf~~L~~eDQ 127 (162)
.|||||||||+|++|+++|+||+||||+++++++.+ ++|.++.|||+.||+..+..+.. ..++++|+||+.|+++||
T Consensus 19 ~vEYAKSgRA~CK~C~~kI~KgeLRIG~~v~~~~~~-~~G~~~~W~H~~Cf~~~~~~~~~~~~~~~~~I~Gf~~L~~eDQ 97 (134)
T 2cs2_A 19 AAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKP-QLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDK 97 (134)
T ss_dssp EEEECSSSCCBCSSSCCBCCTTSEEEEEEEECSSCT-TTCEEEEEECHHHHHHTTTTTTCCTTCCGGGEETTTTSCHHHH
T ss_pred EEEEeCCCCccchhcCCcccCCCeEEEEEecccccC-CCCCcceeECcCcChhhhhccccCCCCChHhCCChHHCCHHHH
Confidence 899999999999999999999999999999887653 35768999999999987654322 126899999999999999
Q ss_pred HHHHHHhhccCC
Q psy6818 128 KIVEATLPSLSD 139 (162)
Q Consensus 128 ~~Ik~~~~~~~~ 139 (162)
++|+++|++++.
T Consensus 98 e~I~~~i~~~~~ 109 (134)
T 2cs2_A 98 EALKKQLPGVKS 109 (134)
T ss_dssp HHHHTTCCSSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999999876
No 7
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=99.94 E-value=1.8e-28 Score=182.61 Aligned_cols=84 Identities=33% Similarity=0.643 Sum_probs=72.9
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccccccccccCCCCCCCCCCcCCCHHHHHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKI 129 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~~~~~e~I~Gf~~L~~eDQ~~ 129 (162)
.|||||||||+|++|+++|.||+||||++++++. ++|.++.|||++||++.+..+.. +.++|+||++|++|||++
T Consensus 30 ~vEyAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~---~~G~~~~WyH~~Cf~~~~~~~~~--~~~~I~Gfd~L~~eDQek 104 (116)
T 3od8_A 30 RVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPM---FDGKVPHWYHFSCFWKVGHSIRH--PDVEVDGFSELRWDDQQK 104 (116)
T ss_dssp EEEECSSSCCBCTTTCCBCCTTSEEEEEEEECSS---SSSEEEEEEEHHHHHHTCCCCSC--HHHHEETGGGSCHHHHHH
T ss_pred EEEEeccCCccCcccCCccCCCCEEEEEEeccCC---cCCCCCeeECCccChhhhhccCC--ChhhCcChHHCCHHHHHH
Confidence 8999999999999999999999999999998764 35778999999999997654432 357899999999999999
Q ss_pred HHHHhhccC
Q psy6818 130 VEATLPSLS 138 (162)
Q Consensus 130 Ik~~~~~~~ 138 (162)
|++++++..
T Consensus 105 Ikk~ie~g~ 113 (116)
T 3od8_A 105 VKKTAEAGG 113 (116)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHcCC
Confidence 999998753
No 8
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=99.91 E-value=7.8e-26 Score=184.84 Aligned_cols=85 Identities=33% Similarity=0.619 Sum_probs=72.5
Q ss_pred ceeeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccccccccccCCCCCCCCCCcCCCHHHHHH
Q psy6818 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKI 129 (162)
Q Consensus 50 ~vEYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~~~~~~~~~~~~e~I~Gf~~L~~eDQ~~ 129 (162)
.|||||||||+|++|+++|.||+||||+++.++. ++|.++.|||++||++..... ..++++|+||++|+++||++
T Consensus 31 ~vEyAkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~---~dG~~~~W~H~~Cf~~~~~~~--~~~~~~I~G~~~L~~eDQek 105 (223)
T 4av1_A 31 RVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPM---FDGKVPHWYHFSCFWKVGHSI--RHPDVEVDGFSELRWDDQQK 105 (223)
T ss_dssp EEEECSSTTCBCTTTCCBCCTTCEEEEEEEEETT---TTEEEEEEEEHHHHTTSCCCC--SCHHHHEETTTSSCHHHHHH
T ss_pred EEEEecCCCccCcccCCccCCCceEEEEEecCCC---CCCCCceeEChhhhhhhhccc--CCCHHHCCChhHCCHHHHHH
Confidence 8999999999999999999999999999998774 356689999999999875432 12568999999999999999
Q ss_pred HHHHhhccCC
Q psy6818 130 VEATLPSLSD 139 (162)
Q Consensus 130 Ik~~~~~~~~ 139 (162)
|++++++.+.
T Consensus 106 Ik~~ie~g~~ 115 (223)
T 4av1_A 106 VKKTAEAGGV 115 (223)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhCCC
Confidence 9999998774
No 9
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=6e-16 Score=114.66 Aligned_cols=48 Identities=38% Similarity=0.699 Sum_probs=44.2
Q ss_pred CCCCCCCCCceeeeccccCCCCC-CCCCCcCCCcCCChhhHHHHHHhhc
Q psy6818 1 SPFFDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIKSKIL 48 (162)
Q Consensus 1 s~~fdG~~~~W~H~~Cff~k~~~-~~~~~i~g~~~Lrw~DQ~~i~~~i~ 48 (162)
+++|||.|++|||+.|||.++.. .++++|+||+.|+||||++|+++|+
T Consensus 43 ~~~~dG~~~~W~H~~Cf~~~~~~i~~~~~I~G~~~L~~eDQ~~I~~~i~ 91 (114)
T 1v9x_A 43 STHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIRKYVE 91 (114)
T ss_dssp CSSSSCCCCEEEEHHHHHTSSSCCSCGGGEETTTTSCHHHHHHHHHHHS
T ss_pred CcccCCCcceeECccccchhhccCCChHHCCChHHCCHHHHHHHHHHHH
Confidence 57899999999999999988754 6889999999999999999999996
No 10
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=99.52 E-value=7.6e-16 Score=114.43 Aligned_cols=48 Identities=38% Similarity=0.848 Sum_probs=42.1
Q ss_pred CCCCCCCCCceeeeccccCCCCCC--CCCCcCCCcCCChhhHHHHHHhhc
Q psy6818 1 SPFFDGKTPKWFHEECFWKKNRPK--ALLDIHNVTSLRHQDQEMIKSKIL 48 (162)
Q Consensus 1 s~~fdG~~~~W~H~~Cff~k~~~~--~~~~i~g~~~Lrw~DQ~~i~~~i~ 48 (162)
+++|||.+++|||++|||+++... +.++|+||++|+||||++|+++|+
T Consensus 61 ~~~~~G~~~~WyH~~Cf~~~~~~~~~~~~~I~Gfd~L~~eDQekIkk~ie 110 (116)
T 3od8_A 61 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAE 110 (116)
T ss_dssp CSSSSSEEEEEEEHHHHHHTCCCCSCHHHHEETGGGSCHHHHHHHHHHHH
T ss_pred cCCcCCCCCeeECCccChhhhhccCCChhhCcChHHCCHHHHHHHHHHHH
Confidence 578999999999999999876432 247899999999999999999995
No 11
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=99.47 E-value=5.6e-15 Score=107.95 Aligned_cols=48 Identities=38% Similarity=0.866 Sum_probs=41.8
Q ss_pred CCCCCCCCCceeeeccccCCCCC--CCCCCcCCCcCCChhhHHHHHHhhc
Q psy6818 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIKSKIL 48 (162)
Q Consensus 1 s~~fdG~~~~W~H~~Cff~k~~~--~~~~~i~g~~~Lrw~DQ~~i~~~i~ 48 (162)
+++|||.++.|||+.|||+++.. .+.++|+||++|+||||++|+++|+
T Consensus 48 ~~~~~g~~~~W~H~~Cf~~~~~~~~~~~~~i~G~~~L~~eDq~~i~~~~e 97 (106)
T 2dmj_A 48 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAE 97 (106)
T ss_dssp ETTTTEEEEEEEETTHHHHTTCCCSCTTTSEETTTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCcCEeECcCccchhhccCCCChhhCCChHHCCHHHHHHHHHHHH
Confidence 46899999999999999987532 2567899999999999999999996
No 12
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=99.42 E-value=2.5e-14 Score=106.25 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=41.6
Q ss_pred CCCC--CCCCCceeeeccccCCC--------CCCCCCCcCCCcCCChhhHHHHHHhhc
Q psy6818 1 SPFF--DGKTPKWFHEECFWKKN--------RPKALLDIHNVTSLRHQDQEMIKSKIL 48 (162)
Q Consensus 1 s~~f--dG~~~~W~H~~Cff~k~--------~~~~~~~i~g~~~Lrw~DQ~~i~~~i~ 48 (162)
+++| ||.++.|||+.|||.++ .+.++++|+||++|+||||++|+++|+
T Consensus 38 ~~~~~~~g~~~~W~H~~Cf~~k~~~~r~~~~~~~~~~~i~G~~~L~~eDQ~~I~~~i~ 95 (117)
T 1uw0_A 38 NPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQHIA 95 (117)
T ss_dssp CTTCSSCCEECCBCCHHHHHHHHHHSCSSSCCSCTTSSSBSTTTSCHHHHHHHHHHHH
T ss_pred cccccCCCCCCeeECcccchhHHhhhhhhccCCCChHHCcChHHCCHHHHHHHHHHHH
Confidence 4677 89999999999999642 234789999999999999999999996
No 13
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=99.41 E-value=5.9e-15 Score=108.83 Aligned_cols=45 Identities=27% Similarity=0.581 Sum_probs=39.7
Q ss_pred CCCCCCceeeeccccCCC-----CC-CCCCCcCCCcCCChhhHHHHHHhhc
Q psy6818 4 FDGKTPKWFHEECFWKKN-----RP-KALLDIHNVTSLRHQDQEMIKSKIL 48 (162)
Q Consensus 4 fdG~~~~W~H~~Cff~k~-----~~-~~~~~i~g~~~Lrw~DQ~~i~~~i~ 48 (162)
++|.+++|||++|||.+. ++ .++++|+||++|+||||++|+++|+
T Consensus 47 ~~G~~~~W~H~~Cf~~~~~~l~~~~~~~~~~I~Gf~~L~~eDQe~Ikk~i~ 97 (111)
T 3odc_A 47 QLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLP 97 (111)
T ss_dssp EEEEEEEEECHHHHHHTHHHHTCCTTTGGGGEETGGGSCHHHHHHHHHHSC
T ss_pred CCCCcceeEChhhccchhhhcccCCCCCHHhCCChHHCCHHHHHHHHHHHH
Confidence 479999999999999864 23 4688999999999999999999995
No 14
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.4e-14 Score=105.71 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=40.2
Q ss_pred CCCCCCCceeeeccccCCCC------CCCCCCcCCCcCCChhhHHHHHHhhc
Q psy6818 3 FFDGKTPKWFHEECFWKKNR------PKALLDIHNVTSLRHQDQEMIKSKIL 48 (162)
Q Consensus 3 ~fdG~~~~W~H~~Cff~k~~------~~~~~~i~g~~~Lrw~DQ~~i~~~i~ 48 (162)
.+||.|++|||+.|||.++. ..++++|+||++|+||||++|+++|+
T Consensus 54 ~~~G~~~~W~H~~Cf~~~~~~~~~~~~~~~~~I~Gf~~L~~eDQe~I~~~i~ 105 (134)
T 2cs2_A 54 PQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLP 105 (134)
T ss_dssp TTTCEEEEEECHHHHHHTTTTTTCCTTCCGGGEETTTTSCHHHHHHHHTTCC
T ss_pred CCCCCcceeECcCcChhhhhccccCCCCChHhCCChHHCCHHHHHHHHHHHH
Confidence 35899999999999997642 34678999999999999999999995
No 15
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=85.96 E-value=0.81 Score=28.88 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=21.1
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
+....|.+|++.|.-..|+. ...-||.+||.=
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a---------------~~~~~H~~CF~C 34 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGITY---------------QDQPWHADCFVC 34 (69)
T ss_dssp CCCCCCSSSCCCCCTTCEEE---------------TTEEECTTTTBC
T ss_pred CCcCCCcccCCEeCcceEEE---------------CccccccCcCEE
Confidence 45678999999997332211 124569999863
No 16
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=85.11 E-value=0.54 Score=31.89 Aligned_cols=37 Identities=24% Similarity=0.582 Sum_probs=25.1
Q ss_pred eeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcc
Q psy6818 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101 (162)
Q Consensus 52 EYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~ 101 (162)
-|.+.-..+|.+|++.|..|+..|. . ...-||.+||.
T Consensus 60 cy~~~~~~~C~~C~~~I~~~~~~~~-----------a--~~~~~H~~CF~ 96 (101)
T 2cup_A 60 CTTREDSPKCKGCFKAIVAGDQNVE-----------Y--KGTVWHKDCFS 96 (101)
T ss_dssp HHTTCCCCBCSSSCCBCCSSSCEEE-----------S--SSCEEETTTCC
T ss_pred HhhhhcCCccccCCCccccCCeEEE-----------e--CCcchHHhCCC
Confidence 3444455799999999998765441 1 12357899986
No 17
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.67 E-value=1.1 Score=28.39 Aligned_cols=32 Identities=28% Similarity=0.658 Sum_probs=21.4
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
++...|.+|++.|. ++. | .. ..+-||.+||.=
T Consensus 3 ~~~~~C~~C~~~I~-~~~-~--~a-----------~~~~~H~~CF~C 34 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRV-I--KA-----------MNNSWHPECFRC 34 (70)
T ss_dssp CCSSBCSSSCCBCC-SCC-E--EE-----------TTEEECTTTSBC
T ss_pred CCCCcCccCCCEec-ceE-E--EE-----------CcccccccCCEe
Confidence 55678999999997 432 2 10 124669999974
No 18
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=84.08 E-value=0.81 Score=28.73 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=24.0
Q ss_pred ecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcc
Q psy6818 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101 (162)
Q Consensus 54 AkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~ 101 (162)
.......|.+|++.|..++.-+.. ...-||..||.
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~-------------~~~~~H~~CF~ 41 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNS-------------NGELYHEQCFV 41 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEE-------------TTEEEETTTSS
T ss_pred cCcCCccchhcCccccCCceEEEe-------------CcCeeCcCCCc
Confidence 334667999999999987644321 12346899987
No 19
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.99 E-value=0.8 Score=29.03 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
...|.+|++.|..++..|- ....-||..||.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-------------a~~~~~H~~CF~C 36 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-------------YGGQTWHEHCFLC 36 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-------------STTCCEETTTCBC
T ss_pred CCCCccCCCccccCccEEE-------------ECccccCcccCeE
Confidence 4689999999987644441 0123568999874
No 20
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.77 E-value=0.63 Score=29.67 Aligned_cols=35 Identities=34% Similarity=0.602 Sum_probs=22.6
Q ss_pred cCCCcccccccccccC--CCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 55 KSNRSTCRGCEAKIAK--GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 55 kS~Ra~Ck~C~~kI~K--geLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.+....|.+|++.|.. ++..|. ...+-||.+||.=
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~-------------a~~~~wH~~CF~C 38 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYIS-------------FEERQWHNDCFNC 38 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEE-------------CSSCEECTTTCBC
T ss_pred CCCCCCCcCCCccccCCCCcceEE-------------ECCcccCcccCEe
Confidence 3556789999999985 332231 1124568999874
No 21
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.51 E-value=0.66 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.622 Sum_probs=22.5
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
+....|.+|++.|.-++..|-. ...-||..||.=
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a-------------~~~~~H~~CF~C 36 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVA-------------LDRVFHVGCFVC 36 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEEC-------------SSSEECTTTCBC
T ss_pred CCCCCCccCCCccCCCceEEEE-------------CCCeEcccCCcc
Confidence 3457899999999865443310 123569999863
No 22
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.45 E-value=0.91 Score=29.56 Aligned_cols=37 Identities=24% Similarity=0.597 Sum_probs=24.5
Q ss_pred eecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+..-..|.+|++.|.-++..|.. ...-||.+||.=
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~~~a-------------~~~~~H~~CF~C 46 (82)
T 1x63_A 10 TTREDSPKCKGCFKAIVAGDQNVEY-------------KGTVWHKDCFTC 46 (82)
T ss_dssp CSCCCSCBCSSSCCBCCSSSCEEEC-------------SSCEEETTTCCC
T ss_pred HccccCCcCccCCcccccCceEEEE-------------CccccccccCch
Confidence 4445457999999999876644411 123458999874
No 23
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=82.80 E-value=0.84 Score=30.89 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=24.2
Q ss_pred ecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 54 AkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+....|.+|++.|..+...|-. ..+-||..||.=
T Consensus 1 ~s~~~~~C~~C~~~I~~~~~~~~a-------------~~~~~H~~CF~C 36 (101)
T 2cup_A 1 GSSGSSGCVECRKPIGADSKEVHY-------------KNRFWHDTCFRC 36 (101)
T ss_dssp CCSCCCBCSSSCCBCCSSSCEEEE-------------TTEEEETTTCCC
T ss_pred CCCCCCcCcccCCcccCCceEEEE-------------CccChhhcCCcc
Confidence 456778999999999754333311 124679999874
No 24
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.28 E-value=1.6 Score=29.14 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=25.0
Q ss_pred eeecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 52 EYAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.|...+...|..|++.|..+++ | .. ...-||..||.=
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~~-v--~a-----------~~~~~H~~CF~C 45 (91)
T 2d8y_A 9 KFQAPARETCVECQKTVYPMER-L--LA-----------NQQVFHISCFRC 45 (91)
T ss_dssp CSCSSSSCBCTTTCCBCCTTSE-E--EC-----------SSSEEETTTCBC
T ss_pred ccCCCCCCcCccCCCccCCcee-E--EE-----------CCCEECCCCCee
Confidence 3455667899999999987663 3 11 123568999874
No 25
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.87 E-value=0.92 Score=28.72 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=22.0
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
-..|..|++.|..++..|-. ...-||..||.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-------------~~~~~H~~CF~C 36 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY-------------KGSSWHETCFIC 36 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE-------------TTEEEETTTTCC
T ss_pred CCCCccCCCcccCCceEEEE-------------CcCeecccCCcc
Confidence 35899999999876544421 123568999874
No 26
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=78.71 E-value=1.5 Score=28.18 Aligned_cols=37 Identities=27% Similarity=0.537 Sum_probs=23.5
Q ss_pred eecCCCcccccccccccC---CCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAK---GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~K---geLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+..-..|.+|++.|.. ++..|.. ...-||..||.=
T Consensus 10 y~~~~~~~C~~C~~~I~~~g~~~~~~~a-------------~~~~~H~~CF~C 49 (77)
T 2egq_A 10 YKNFVAKKCAGCKNPITGFGKGSSVVAY-------------EGQSWHDYCFHC 49 (77)
T ss_dssp CCSCCCCCCSSSCCCCCCCSSCCCEEEE-------------TTEEEETTTCBC
T ss_pred hchhhCccCcccCCcccCCCCCceeEEE-------------CcceeCcccCEe
Confidence 444445789999999985 3333311 134569999974
No 27
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.65 E-value=1.5 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=19.8
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~ 101 (162)
....|.+|++.|.- + .| .. ...-||..||.
T Consensus 14 ~~~~C~~C~~~I~~-~-~~--~a-----------~~~~~H~~CF~ 43 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V-FV--KL-----------RDRHRHPECYV 43 (79)
T ss_dssp CCCCCSSSCCCCCS-S-CE--EC-----------SSCEECTTTTS
T ss_pred CCCccccCCCCccC-c-EE--EE-----------CcceeCcCcCe
Confidence 45789999999974 3 12 10 12466999986
No 28
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.00 E-value=2.2 Score=28.02 Aligned_cols=32 Identities=31% Similarity=0.857 Sum_probs=22.0
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
+...|.+|++.|..+++ | .. ..+-||..||.=
T Consensus 14 ~~~~C~~C~~~I~~~~~-v--~a-----------~~~~wH~~CF~C 45 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQS-L--LA-----------LDKQWHVSCFKC 45 (80)
T ss_dssp SCSCCTTTCCCCSSSCC-E--EE-----------TTEEECTTTCBC
T ss_pred CCCCCcCcCCeeCCCeE-E--EE-----------CCcccccccCCc
Confidence 45689999999987663 2 10 124569999974
No 29
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=77.90 E-value=2.3 Score=30.45 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=20.5
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
...|.+|++.|.-.+ +|-. ..+-||..||.=
T Consensus 61 ~~~C~~C~~~I~~~~-~v~a-------------~~~~wH~~CF~C 91 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF-LLYA-------------MDSYWHSRCLKC 91 (123)
T ss_dssp CSBBSSSSSBCCSSS-EEEE-------------TTEEEETTTSBC
T ss_pred CCcCcCCCCCcCCcE-EEEe-------------CCcEEcccccCc
Confidence 358999999998543 2210 134679999873
No 30
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.79 E-value=2.4 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.525 Sum_probs=22.4
Q ss_pred eecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+..-..|.+|++.|....|+. ...-||..||.=
T Consensus 10 y~~~~~~~C~~C~~~I~~~~v~a---------------~~~~~H~~CF~C 44 (80)
T 1x3h_A 10 FLAMFSPKCGGCNRPVLENYLSA---------------MDTVWHPECFVC 44 (80)
T ss_dssp CCCCCSCBCTTTCCBCCSSCEEE---------------TTEEECTTTCBC
T ss_pred HhhhcCCccccCCCeecceeEEE---------------CCCeEecCcCCh
Confidence 44444578999999998432211 124568999873
No 31
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.31 E-value=1.7 Score=27.37 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=19.8
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
....|.+|++.|. ++. | .. ..+-||..||.=
T Consensus 4 ~~~~C~~C~~~I~-~~~-~--~a-----------~~~~~H~~CF~C 34 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGG-V--TY-----------REQPWHKECFVC 34 (70)
T ss_dssp CCCBCSSSCCBCC-SSE-E--ES-----------SSSEEETTTSBC
T ss_pred CCCCCcccCCeec-cce-E--EE-----------CccccCCCCCcc
Confidence 3468999999997 332 2 11 123568999873
No 32
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=76.08 E-value=2.6 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=21.4
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.+...|..|++.|..+++ | .. ..+-||.+||.=
T Consensus 5 ~~~~~C~~C~~~I~~~~~-~--~a-----------~~~~~H~~CF~C 37 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEE-V--QC-----------DGRSFHRCCFLC 37 (81)
T ss_dssp ---CBCSSSCCBCSSTTE-E--EE-----------TTEEEESSSEEC
T ss_pred CCCCcCcCcCccccCcee-E--Ee-----------CCcccccccCcc
Confidence 346789999999987773 3 11 124678999863
No 33
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.83 E-value=1.9 Score=27.85 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=13.7
Q ss_pred eecCCCcccccccccccCC
Q psy6818 53 YAKSNRSTCRGCEAKIAKG 71 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~Kg 71 (162)
|.+..-..|.+|++.|...
T Consensus 10 y~~~~~~~C~~C~~~I~~~ 28 (80)
T 2cuq_A 10 YENKFAPRCARCSKTLTQG 28 (80)
T ss_dssp CCCCSSCCCTTTCCCCCSC
T ss_pred HccccCCcCCCCCCEecCc
Confidence 4444457899999999643
No 34
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.81 E-value=2.3 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=21.7
Q ss_pred ecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 54 AkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
+......|.+|++.|. ++. |- . ..+-||..||.=
T Consensus 21 ~~~~~~~C~~C~~~I~-~~~-v~--a-----------~~~~~H~~CF~C 54 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIR-GPF-LV--A-----------LGKSWHPEEFNC 54 (90)
T ss_dssp TTTCCCBBSSSCCBCC-SCE-EE--E-----------TTEEECTTTCBC
T ss_pred CCCCCCCCccCCCEec-ceE-EE--E-----------CCccccccCCcc
Confidence 3445678999999995 432 21 0 124668999874
No 35
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=75.01 E-value=1.9 Score=28.61 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=20.0
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
....|.+|++.|.- +. | .. ...-||.+||.=
T Consensus 24 ~~~~C~~C~~~I~~-~~-~--~a-----------~~~~~H~~CF~C 54 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV-V--KA-----------RDKYRHPECFVC 54 (89)
T ss_dssp SCCBCTTTCCBCCS-CC-E--ES-----------SSCEECTTTCCC
T ss_pred cCCCcccCCCEecc-cE-E--EE-----------CCceECccCCEe
Confidence 34679999999984 21 1 10 124679999873
No 36
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.95 E-value=3.1 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
....|.+|++.|..+++ |- . ..+-||..||.=
T Consensus 8 ~~~~C~~C~~~I~~~~~-v~--a-----------~~~~~H~~CF~C 39 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEK-VS--S-----------LGKDWHKFCLKC 39 (76)
T ss_dssp CCCBCTTTCCBCCTTTE-EE--E-----------TTEEEETTTCBC
T ss_pred CCCCCcCCCCEeECCeE-EE--E-----------CCeEeeCCCCCC
Confidence 34689999999997774 21 1 124678999863
No 37
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=73.60 E-value=1.9 Score=26.84 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=19.7
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
...|.+|++.|. ++. | . . ..+-||..||.=
T Consensus 5 ~~~C~~C~~~I~-~~~-~---~--a--------~~~~~H~~CF~C 34 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV-V---N--A--------MGKQWHVEHFVC 34 (66)
T ss_dssp CCEETTTTEECC-SCE-E---C--C--------TTSBEETTTCBC
T ss_pred CCCCcccCCEec-ceE-E---E--E--------CccccccCcCEE
Confidence 467999999998 642 2 1 1 123458999863
No 38
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.59 E-value=1.5 Score=28.00 Aligned_cols=33 Identities=33% Similarity=0.600 Sum_probs=21.3
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
....|.+|++.|..++.-+.. ...-||..||.=
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a-------------~~~~~H~~CF~C 42 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS-------------NGELYHEQCFVC 42 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE-------------TTEEECTTTCCC
T ss_pred CCCCchhcCCccCCCceEEEe-------------CccEeccccCeE
Confidence 457899999999754322210 124669999874
No 39
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.32 E-value=3.2 Score=26.88 Aligned_cols=35 Identities=34% Similarity=0.731 Sum_probs=22.2
Q ss_pred eecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+..-..|.+|++.|. +++ |- . ...-||..||.=
T Consensus 10 y~~~~~~~C~~C~~~I~-~~~-v~--a-----------~~~~wH~~CF~C 44 (81)
T 1v6g_A 10 YQRLYGTRCFSCDQFIE-GEV-VS--A-----------LGKTYHPDCFVC 44 (81)
T ss_dssp GGGSCCCBCTTTCCBCC-SCC-EE--E-----------TTEEECTTTSSC
T ss_pred HHhHhCCcCccccCEec-cce-EE--E-----------CCceeCccCCcc
Confidence 44555569999999998 431 21 0 123568999864
No 40
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.20 E-value=1.7 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=22.5
Q ss_pred eecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+..-..|.+|++.|..++..| .....-||..||.=
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~~-------------~a~~~~~H~~CF~C 46 (82)
T 2ehe_A 10 YDNTFANTCAECQQLIGHDSREL-------------FYEDRHFHEGCFRC 46 (82)
T ss_dssp CCCCCSCBCTTTCCBCCSSCCBC-------------CCSSCCCBTTTSBC
T ss_pred hCcccCCcCccCCCccccCcEEE-------------EeCCccccccCCee
Confidence 44444568999999998433222 01123458999874
No 41
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.14 E-value=1.5 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.+...|.+|++.|..+++-. ...+-||..||.=
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--------------a~~~~wH~~CF~C 45 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--------------VNGHFFHRSCFRC 45 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--------------BTTBCCBTTTCBC
T ss_pred CCCCCCcccCCCcccceEEE--------------ECCCeeCCCcCEE
Confidence 35578999999997654211 1134669999873
No 42
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.76 E-value=1.5 Score=28.43 Aligned_cols=35 Identities=14% Similarity=0.399 Sum_probs=24.5
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
...|..|++.+..++.-|+- ++.-..|||..|+--
T Consensus 8 ~~~C~~C~~p~~~~~~mI~C----------D~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILC----------EASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEB----------TTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCCCCCeEec----------ccCccccCchhccCC
Confidence 35688999998777666643 124568999999643
No 43
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=71.99 E-value=3.2 Score=29.26 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=20.8
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
...|.+|++.|..++ .| .. ..+-||..||.=
T Consensus 2 ~~~C~~C~~~I~~~~-~~--~a-----------~~~~wH~~CF~C 32 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRY-FL--KA-----------IDQYWHEDCLSC 32 (131)
T ss_dssp CCBBTTTCCBCCSSE-EE--EE-----------TTEEEETTTCBC
T ss_pred cccCcCCCCEeCCcE-EE--EE-----------CCCcccHHHccc
Confidence 568999999998543 12 10 134788999874
No 44
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.23 E-value=4.3 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.593 Sum_probs=21.8
Q ss_pred eecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|. .....|.+|++.|. ++ .|. . ...-||..||.=
T Consensus 11 y~-~~~~~C~~C~~~I~-~~-~~~--a-----------~~~~~H~~CF~C 44 (81)
T 2dlo_A 11 YV-ATLEKCATCSQPIL-DR-ILR--A-----------MGKAYHPGCFTC 44 (81)
T ss_dssp CC-SSCCBCTTTCCBCC-SC-CEE--E-----------TTEEECTTTCBC
T ss_pred hh-cCCCccccCCCeec-ce-eEE--E-----------CCccccHHhcCc
Confidence 44 35678999999998 43 221 0 124568999864
No 45
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.64 E-value=3.3 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.575 Sum_probs=20.3
Q ss_pred ccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 60 TCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 60 ~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.|.+|++.|..++. |- . ..+-||..||.=
T Consensus 2 ~C~~C~~~I~~~~~-v~--a-----------~~~~~H~~CF~C 30 (76)
T 1iml_A 2 KCPKCDKEVYFAER-VT--S-----------LGKDWHRPCLKC 30 (76)
T ss_dssp BCTTTSSBCCGGGE-EE--E-----------TTEEEETTTCBC
T ss_pred cCCCCCCEEECceE-EE--E-----------CCccccCCCCCc
Confidence 69999999987764 31 1 134678999873
No 46
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.36 E-value=3.2 Score=26.59 Aligned_cols=31 Identities=29% Similarity=0.569 Sum_probs=19.9
Q ss_pred cccccccccccC--CCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 59 STCRGCEAKIAK--GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 59 a~Ck~C~~kI~K--geLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
..|.+|++.|.. ++..|-. ..+-||.+||.=
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a-------------~~~~wH~~CF~C 38 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF-------------QDSQWHSECFNC 38 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE-------------TTEEEEGGGCBC
T ss_pred CCCccCCCcccCCCCceeEEE-------------CCcccCcccCCh
Confidence 579999999985 3333311 123568999863
No 47
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.22 E-value=1.5 Score=28.19 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=10.2
Q ss_pred cccccccccccC
Q psy6818 59 STCRGCEAKIAK 70 (162)
Q Consensus 59 a~Ck~C~~kI~K 70 (162)
..|.+|++.|.-
T Consensus 6 ~~C~~C~~~I~~ 17 (73)
T 1wig_A 6 SGCDSCEKYITG 17 (73)
T ss_dssp CSCSSSCCCCSS
T ss_pred CCcccCCCEecC
Confidence 589999999974
No 48
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.42 E-value=1.9 Score=28.15 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=20.8
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.....|.+|++.|. |+. | . ....-||..||.=
T Consensus 13 ~~~~~C~~C~~~I~-~~~-v--~-----------a~~~~~H~~CF~C 44 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQP-L--I-----------FKNDPYHPDHFNC 44 (79)
T ss_dssp CCCCBCTTTCCBCC-SCC-C--C-----------CSSSCCCTTTSBC
T ss_pred cCCCCCccCCCEec-ceE-E--E-----------ECcceeCCCCCEe
Confidence 34578999999998 432 1 0 1123568999874
No 49
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=68.64 E-value=2.7 Score=31.31 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=22.8
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
..+|.+|++.|..+++.+.. ....||..||.=
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a-------------~~~~~H~~CF~C 96 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRA-------------QDFVYHLHCFAC 96 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEE-------------TTEEEEGGGCBC
T ss_pred cccccccccccCCCcEEEEc-------------CCceEeeCCCcC
Confidence 46899999999877654311 135889999863
No 50
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=67.72 E-value=2.1 Score=30.33 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=19.9
Q ss_pred cccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 59 STCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 59 a~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
..|..|++.|..++.-|. ....-||..||.=
T Consensus 9 ~~C~~C~~~I~~~e~~~~-------------a~~~~~H~~CF~C 39 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMR-------------VKDKVYHLECFKC 39 (123)
T ss_dssp CCCSSSSCCCCTTCCCCC-------------CSSCCCCTTTCBC
T ss_pred CcccCCCCeecCCceEEE-------------ECCcccccccCcc
Confidence 479999999987542220 1123468899863
No 51
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.71 E-value=2.7 Score=29.70 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=12.9
Q ss_pred CCcccccccccccCCC
Q psy6818 57 NRSTCRGCEAKIAKGE 72 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~Kge 72 (162)
....|.+|++.|..++
T Consensus 4 ~~~~C~~C~~~I~~~~ 19 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRF 19 (122)
T ss_dssp CCCCBSSSSSCCCSSC
T ss_pred CCCCCcccCCEeCCcE
Confidence 4578999999998664
No 52
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=64.17 E-value=3.3 Score=25.81 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=20.5
Q ss_pred cccccccccccCCCeEEEEEeecCCCCcccCCcCeeee--cCCccc
Q psy6818 59 STCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH--LSCFNA 102 (162)
Q Consensus 59 a~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH--~~Cf~~ 102 (162)
..|.+|++.|.-++..|.. ..+-|| .+||.=
T Consensus 3 ~~C~~C~~~I~~~~~~v~a-------------~~~~wH~~~~CF~C 35 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY-------------NNFSWHASTECFLC 35 (65)
T ss_dssp EECTTTSSEECTTSCEEEE-------------TTEEEETTTTTSBC
T ss_pred CCCcCCCCeeccCceEEEE-------------CCCccCCCCCCEEC
Confidence 3699999999875333311 134678 899874
No 53
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=63.74 E-value=2.9 Score=25.57 Aligned_cols=12 Identities=42% Similarity=1.223 Sum_probs=9.8
Q ss_pred CCCCceeeeccc
Q psy6818 6 GKTPKWFHEECF 17 (162)
Q Consensus 6 G~~~~W~H~~Cf 17 (162)
|....|||..|.
T Consensus 23 ~~C~~WfH~~Cv 34 (52)
T 2kgg_A 23 GGCDEWFHQVCV 34 (52)
T ss_dssp TTTCCEEETTTT
T ss_pred CCCCccCccccc
Confidence 356789999997
No 54
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.30 E-value=4.1 Score=28.34 Aligned_cols=31 Identities=26% Similarity=0.652 Sum_probs=19.8
Q ss_pred CcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 58 Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
-..|.+|++.|..++ .|- . ..+-||..||.=
T Consensus 3 ~~~C~~C~~~I~~~~-~~~--a-----------~~~~wH~~CF~C 33 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY-FLK--A-----------IDQYWHEDCLSC 33 (114)
T ss_dssp CBCBSSSCSCBCSSE-EEE--C-----------SSSEECTTTCCC
T ss_pred CCCCcCCCCeeCCcE-EEE--E-----------CchhHHHhcCcc
Confidence 457999999998442 220 0 123568899863
No 55
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=62.02 E-value=3.1 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.780 Sum_probs=10.6
Q ss_pred CC-CCCceeeeccc
Q psy6818 5 DG-KTPKWFHEECF 17 (162)
Q Consensus 5 dG-~~~~W~H~~Cf 17 (162)
|+ ....|||+.|+
T Consensus 28 D~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 28 EDQRCQVWQHLNCV 41 (68)
T ss_dssp SCTTTCEEEETTTS
T ss_pred CCCCCCCeEchhhC
Confidence 44 56789999998
No 56
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=60.73 E-value=1.6 Score=30.34 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=12.2
Q ss_pred ChhhHHHHHHhhcc
Q psy6818 36 RHQDQEMIKSKILG 49 (162)
Q Consensus 36 rw~DQ~~i~~~i~~ 49 (162)
--|||.+||+++++
T Consensus 62 tlDDQKkIkkRLe~ 75 (88)
T 3cqx_C 62 ALEDQKKIKRRLET 75 (88)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHH
Confidence 46999999999975
No 57
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=60.35 E-value=2.6 Score=26.96 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=9.1
Q ss_pred CC-ceeeecccc
Q psy6818 8 TP-KWFHEECFW 18 (162)
Q Consensus 8 ~~-~W~H~~Cff 18 (162)
.+ .|||+.|.=
T Consensus 32 C~~~WfH~~Cvg 43 (62)
T 2g6q_A 32 CPIEWFHFSCVS 43 (62)
T ss_dssp CSSCEEETGGGT
T ss_pred CCcccEecccCC
Confidence 45 899999984
No 58
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=58.17 E-value=8.2 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.596 Sum_probs=22.0
Q ss_pred cCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcc
Q psy6818 55 KSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101 (162)
Q Consensus 55 kS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~ 101 (162)
.+....|.+|++.|...++ +- . ..+-||..||.
T Consensus 57 ~~~~~~C~~C~~~I~~~~~-~~--a-----------~~~~wH~~CF~ 89 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFI-LK--A-----------LDRHWHSKCLK 89 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEE-EE--E-----------TTEEECSSTTS
T ss_pred CCCCCcCccCCCCccCcee-EE--e-----------cCCeEccccCc
Confidence 4556899999999985431 21 0 13467888886
No 59
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.88 E-value=4.4 Score=26.11 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=13.0
Q ss_pred eecCCCccccccccccc
Q psy6818 53 YAKSNRSTCRGCEAKIA 69 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~ 69 (162)
|.+.--..|.+|++.|.
T Consensus 10 y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 10 YWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp SSCCSSCBCTTTCCBCC
T ss_pred HhhhcCCcCccCCCCcC
Confidence 44444468999999998
No 60
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=57.16 E-value=2.4 Score=31.98 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=24.0
Q ss_pred eecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 53 YAkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.+.-..+|.+|++.|..+++.+. ....+||..||.=
T Consensus 114 y~~~f~~kC~~C~~~I~~~~~v~~-------------a~~~~~H~~CF~C 150 (182)
T 2jtn_A 114 FFKRFGTKCAACQLGIPPTQVVRR-------------AQDFVYHLHCFAC 150 (182)
T ss_dssp HHHTTSCCCTTTCCCCCSSCCCCE-------------ETTEECCTTTCCC
T ss_pred cccccccccccCCCccCCCceEEe-------------cCCCCEEeCCCcC
Confidence 344445689999999986643221 0235889999963
No 61
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=55.18 E-value=3.6 Score=25.97 Aligned_cols=11 Identities=45% Similarity=1.150 Sum_probs=9.1
Q ss_pred CC-ceeeecccc
Q psy6818 8 TP-KWFHEECFW 18 (162)
Q Consensus 8 ~~-~W~H~~Cff 18 (162)
.+ .|||+.|.=
T Consensus 30 C~~~wfH~~Cvg 41 (59)
T 3c6w_A 30 CPIEWFHFACVD 41 (59)
T ss_dssp CSSCEEETGGGT
T ss_pred CCCCCEecccCC
Confidence 45 699999985
No 62
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.76 E-value=7.3 Score=28.85 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=11.6
Q ss_pred CCCcccccccccccCCC
Q psy6818 56 SNRSTCRGCEAKIAKGE 72 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~Kge 72 (162)
.+...|.+|++.|...+
T Consensus 4 ~~~~~C~~C~~~I~~~~ 20 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRF 20 (169)
T ss_dssp ---CBBSSSSSBCCSSS
T ss_pred CCCCccccCCCccCCcE
Confidence 34578999999997543
No 63
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=53.92 E-value=5 Score=28.20 Aligned_cols=13 Identities=46% Similarity=1.186 Sum_probs=10.5
Q ss_pred CCCCCceeeeccc
Q psy6818 5 DGKTPKWFHEECF 17 (162)
Q Consensus 5 dG~~~~W~H~~Cf 17 (162)
|+....|||+.|.
T Consensus 23 dd~C~~WfH~~CV 35 (105)
T 2xb1_A 23 EASCQKWFHRECT 35 (105)
T ss_dssp TTTTCCEEEGGGT
T ss_pred cCCcccccccccC
Confidence 4456899999997
No 64
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.98 E-value=4.1 Score=26.73 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.0
Q ss_pred CC-ceeeecccc
Q psy6818 8 TP-KWFHEECFW 18 (162)
Q Consensus 8 ~~-~W~H~~Cff 18 (162)
.+ .|||+.|.=
T Consensus 37 C~~~wfH~~Cvg 48 (71)
T 1wen_A 37 CSIEWFHFACVG 48 (71)
T ss_dssp CSCCCEETTTTT
T ss_pred CCCccEecccCC
Confidence 45 699999984
No 65
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=50.73 E-value=6.5 Score=29.70 Aligned_cols=29 Identities=31% Similarity=0.740 Sum_probs=20.2
Q ss_pred ccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcc
Q psy6818 60 TCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101 (162)
Q Consensus 60 ~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~ 101 (162)
.|..|++.|..++..|.. ...-||..||.
T Consensus 71 ~C~~C~~~I~~~e~~i~a-------------~~~~~H~~CF~ 99 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA-------------QGNVYHLKCFT 99 (188)
T ss_dssp ECTTTCCEECTTSEEEEE-------------TTEEECGGGCB
T ss_pred ccccCCCccccCcEEEEc-------------CCCEEeCCCCe
Confidence 799999999877644421 12467888876
No 66
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=50.73 E-value=4.6 Score=27.89 Aligned_cols=11 Identities=45% Similarity=1.198 Sum_probs=8.9
Q ss_pred CC-ceeeecccc
Q psy6818 8 TP-KWFHEECFW 18 (162)
Q Consensus 8 ~~-~W~H~~Cff 18 (162)
.+ .|||+.|+=
T Consensus 47 C~~eWfH~~CVg 58 (90)
T 2jmi_A 47 CPFEWFHYGCVG 58 (90)
T ss_dssp CSCSCEETTTSS
T ss_pred CccccCcCccCC
Confidence 45 799999984
No 67
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.55 E-value=4.7 Score=25.41 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.1
Q ss_pred CC-ceeeecccc
Q psy6818 8 TP-KWFHEECFW 18 (162)
Q Consensus 8 ~~-~W~H~~Cff 18 (162)
.+ .|||+.|.=
T Consensus 31 C~~~wfH~~Cvg 42 (60)
T 2vnf_A 31 CSIEWFHFACVG 42 (60)
T ss_dssp CSSCEEETGGGT
T ss_pred CCCceEehhcCC
Confidence 45 799999985
No 68
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.52 E-value=5.3 Score=25.06 Aligned_cols=10 Identities=40% Similarity=1.225 Sum_probs=8.8
Q ss_pred CCceeeeccc
Q psy6818 8 TPKWFHEECF 17 (162)
Q Consensus 8 ~~~W~H~~Cf 17 (162)
...|||..|.
T Consensus 28 C~~WfH~~Cv 37 (64)
T 1we9_A 28 CEMWFHGKCV 37 (64)
T ss_dssp SCCEEETTTT
T ss_pred CCCCCCcccc
Confidence 4789999998
No 69
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=47.33 E-value=12 Score=28.19 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=22.0
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCcc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~ 101 (162)
++...|.+|++.|..+++ | .. ..+-||..||.
T Consensus 5 ~~~~~C~~C~~~I~~~~~-v--~a-----------~g~~wH~~CF~ 36 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEE-V--QC-----------EGSSFHKSCFL 36 (192)
T ss_dssp CCCEECTTTCCEECSSCC-E--EE-----------TTEEECTTTCB
T ss_pred CCCCcCccCCCeecceeE-E--Ee-----------CCceecCCCCc
Confidence 345789999999987763 2 11 12467888886
No 70
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=47.29 E-value=47 Score=20.35 Aligned_cols=31 Identities=23% Similarity=0.651 Sum_probs=21.3
Q ss_pred CCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 57 ~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
+...|..|+.. |+|-.. ..-+.|||+.|...
T Consensus 4 ~~~~C~vC~~~---g~ll~C------------d~C~~~fH~~Cl~p 34 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMC------------DTCSRVYHLDCLDP 34 (60)
T ss_dssp CCSSCTTTCCC---SSCEEC------------SSSSCEECGGGSSS
T ss_pred CCCCCcCCCCC---CcEEEc------------CCCCcCEECCcCCC
Confidence 56778889763 444332 23678999999875
No 71
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.37 E-value=17 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.635 Sum_probs=21.9
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
.+-..|..|+.. |+|-+. ..-+.|||+.|...
T Consensus 7 ~~~~~C~vC~~~---g~ll~C------------d~C~~~~H~~Cl~p 38 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMC------------DTCSRVYHLDCLDP 38 (56)
T ss_dssp SSCCSCSSSCCS---SCCEEC------------SSSSCEECSSSSSS
T ss_pred CCCCCCccCCCC---CeEEEc------------CCCCcceECccCCC
Confidence 456779889763 444332 23678999999875
No 72
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.84 E-value=5.5 Score=27.53 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=8.9
Q ss_pred CC-ceeeecccc
Q psy6818 8 TP-KWFHEECFW 18 (162)
Q Consensus 8 ~~-~W~H~~Cff 18 (162)
.+ .|||+.|.=
T Consensus 57 C~~~WfH~~CVg 68 (91)
T 1weu_A 57 CSIEWFHFACVG 68 (91)
T ss_dssp CSCCCCCSTTTT
T ss_pred CCCCCEecccCC
Confidence 45 799999984
No 73
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.19 E-value=9.3 Score=26.61 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=22.6
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeee--cCCccc
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH--LSCFNA 102 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH--~~Cf~~ 102 (162)
....+|.+|++.|..++..|-. ...-|| .+||.=
T Consensus 61 ~~~~~C~~C~~~I~~~~~~~~a-------------~~~~~H~~~~CF~C 96 (126)
T 2xqn_T 61 NHAVVCQGCHNAIDPEVQRVTY-------------NNFSWHASTECFLC 96 (126)
T ss_dssp HSCCBCTTTCSBCCTTSCEEEE-------------TTEEEESSTTTSBC
T ss_pred CcCccCcccCCcCCcCceEEEC-------------CCCEeeCCCCCcCc
Confidence 3446899999999976655421 123457 889864
No 74
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=42.12 E-value=7.7 Score=23.51 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=9.2
Q ss_pred CCceeeecccc
Q psy6818 8 TPKWFHEECFW 18 (162)
Q Consensus 8 ~~~W~H~~Cff 18 (162)
...|||..|+=
T Consensus 24 C~~W~H~~Cvg 34 (52)
T 3o7a_A 24 CHTWIHLSCAK 34 (52)
T ss_dssp TCCEEETTTTT
T ss_pred CCccccccccC
Confidence 46899999984
No 75
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=40.73 E-value=20 Score=22.72 Aligned_cols=34 Identities=32% Similarity=0.768 Sum_probs=23.0
Q ss_pred ecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 54 AkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
+..+-..|..|+.. |+|-+. ..-+.|||+.|.-.
T Consensus 4 ~~~~~~~C~vC~~~---g~ll~C------------D~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 4 AQKNEDECAVCRDG---GELICC------------DGCPRAFHLACLSP 37 (66)
T ss_dssp CCSCCCSBSSSSCC---SSCEEC------------SSCCCEECTTTSSS
T ss_pred CCCCCCCCccCCCC---CCEEEc------------CCCChhhcccccCC
Confidence 44577889999753 444332 23678999999874
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.61 E-value=5.5 Score=25.81 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=9.3
Q ss_pred CCceeeecccc
Q psy6818 8 TPKWFHEECFW 18 (162)
Q Consensus 8 ~~~W~H~~Cff 18 (162)
.+.|||+.|.=
T Consensus 39 C~~wfH~~Cv~ 49 (75)
T 2k16_A 39 CDDWYHWPCVG 49 (75)
T ss_dssp SSSEEEHHHHT
T ss_pred CCcccccccCC
Confidence 47999999973
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.08 E-value=11 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=19.2
Q ss_pred cccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 59 STCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 59 a~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
|.|..|++.=..+.|=+. ..-++|||..|...
T Consensus 1 a~C~vC~~~~~~~~ll~C------------d~C~~~~H~~Cl~p 32 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILC------------DECNKAFHLFCLRP 32 (51)
T ss_dssp CCCTTTCCSSCCSCCEEC------------TTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCCEEEC------------CCCChhhCcccCCC
Confidence 467778654333332221 23578999999864
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=38.92 E-value=80 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=18.1
Q ss_pred CCCcCCCHHHHHHHHHHhhccCC
Q psy6818 117 PGFGSLEKKDQKIVEATLPSLSD 139 (162)
Q Consensus 117 ~Gf~~L~~eDQ~~Ik~~~~~~~~ 139 (162)
.|...|.+.+|+.++.++..+..
T Consensus 73 ~~~~~l~~~~~~~c~~il~~l~~ 95 (184)
T 3o36_A 73 EGLVKLTPIDKRKCERLLLFLYC 95 (184)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHh
Confidence 46677999999999888877643
No 79
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.90 E-value=5.9 Score=25.83 Aligned_cols=10 Identities=40% Similarity=1.361 Sum_probs=8.8
Q ss_pred CCceeeeccc
Q psy6818 8 TPKWFHEECF 17 (162)
Q Consensus 8 ~~~W~H~~Cf 17 (162)
...|||+.|+
T Consensus 36 C~~WfH~~Cv 45 (76)
T 1wem_A 36 CEEWFHGDCV 45 (76)
T ss_dssp SCCEEEHHHH
T ss_pred CCCcEeCeEE
Confidence 4789999997
No 80
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.58 E-value=9 Score=24.72 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=9.1
Q ss_pred CCceeeecccc
Q psy6818 8 TPKWFHEECFW 18 (162)
Q Consensus 8 ~~~W~H~~Cff 18 (162)
...|||..|+=
T Consensus 37 C~~W~H~~Cvg 47 (72)
T 1wee_A 37 CGVWHHTRCIG 47 (72)
T ss_dssp SCEEEETTTTT
T ss_pred CCCccCCeeec
Confidence 37899999984
No 81
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.95 E-value=7.8 Score=25.51 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.8
Q ss_pred CCCceeeecccc
Q psy6818 7 KTPKWFHEECFW 18 (162)
Q Consensus 7 ~~~~W~H~~Cff 18 (162)
....|||..|+=
T Consensus 37 ~C~~W~H~~CVg 48 (78)
T 1wew_A 37 RCHVWQHVGCVI 48 (78)
T ss_dssp TTCCEEEHHHHS
T ss_pred cCCccccCEEEc
Confidence 457799999984
No 82
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=35.87 E-value=13 Score=25.56 Aligned_cols=11 Identities=27% Similarity=0.755 Sum_probs=9.6
Q ss_pred CCceeeecccc
Q psy6818 8 TPKWFHEECFW 18 (162)
Q Consensus 8 ~~~W~H~~Cff 18 (162)
.+.|||..|+-
T Consensus 48 C~~w~H~~C~~ 58 (98)
T 2lv9_A 48 CSVWQHIDCMG 58 (98)
T ss_dssp TCBEEETTTTT
T ss_pred CCCcCcCcCCC
Confidence 68999999984
No 83
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=35.39 E-value=19 Score=28.90 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=27.5
Q ss_pred CeeeecCCcccc--ccccccCCCCCCCCCCcCCCHHHHHHHHH
Q psy6818 92 PEWYHLSCFNAV--RLDLEFSASGKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 92 ~~WyH~~Cf~~~--~~~~~~~~~~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
.-|.+..|.... +.-++| +..||||.+|+.+||-.+.+
T Consensus 76 ~~~~~~~~~~~~~v~~iVew---AK~iPgF~~L~~~DQi~LLk 115 (273)
T 3vi8_A 76 RIFHCCQCTSVETVTELTEF---AKAIPGFANLDLNDQVTLLK 115 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---GGGSTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HccCcCcccCCHHHHHHHHH
Confidence 358888775432 222333 57999999999999998866
No 84
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.36 E-value=6.5 Score=25.64 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=8.0
Q ss_pred ceeeecccc
Q psy6818 10 KWFHEECFW 18 (162)
Q Consensus 10 ~W~H~~Cff 18 (162)
.|||+.|+=
T Consensus 30 ~WfH~~Cvg 38 (70)
T 1x4i_A 30 EWFHYGCVG 38 (70)
T ss_dssp CCEEHHHHT
T ss_pred cCCcccccc
Confidence 799999984
No 85
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=32.60 E-value=13 Score=23.94 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=9.2
Q ss_pred CCceeeecccc
Q psy6818 8 TPKWFHEECFW 18 (162)
Q Consensus 8 ~~~W~H~~Cff 18 (162)
...|||..|+=
T Consensus 39 C~~WfH~~Cvg 49 (68)
T 3o70_A 39 CHTWIHLSCAK 49 (68)
T ss_dssp TCCEEETTTTT
T ss_pred CCccccccccC
Confidence 46899999984
No 86
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=32.16 E-value=43 Score=20.74 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=23.7
Q ss_pred cCCCcccccccccc--cCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 55 KSNRSTCRGCEAKI--AKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 55 kS~Ra~Ck~C~~kI--~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
..+-..|..|+..- ..+.|-+. ..-..+||..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~C------------d~C~~~~H~~C~~p 40 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVIC------------DKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEEC------------SSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEC------------CCCChHHHhhhCCC
Confidence 45677899998652 23444332 23678999999875
No 87
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=31.96 E-value=24 Score=27.99 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.6
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+-+||-.+.+
T Consensus 72 AK~iP~F~~L~~~DQi~LLk 91 (257)
T 3v3e_B 72 AEKIPGFAELSPADQDLLLE 91 (257)
T ss_dssp HHTSTTGGGSCHHHHHHHHH
T ss_pred HHcCCCcccCCHHHHHHHHH
Confidence 56899999999999988855
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.29 E-value=9.3 Score=25.12 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=8.7
Q ss_pred CCceeeeccc
Q psy6818 8 TPKWFHEECF 17 (162)
Q Consensus 8 ~~~W~H~~Cf 17 (162)
...|||..|+
T Consensus 33 C~~WfH~~Cv 42 (79)
T 1wep_A 33 CQDWFHGSCV 42 (79)
T ss_dssp TCCEEEHHHH
T ss_pred CCCcEEeeec
Confidence 4789999997
No 89
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=30.67 E-value=4.3 Score=25.90 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=9.4
Q ss_pred CCcCCChhhHHH
Q psy6818 31 NVTSLRHQDQEM 42 (162)
Q Consensus 31 g~~~Lrw~DQ~~ 42 (162)
-|++|||+|-+.
T Consensus 42 S~EELR~eDY~~ 53 (56)
T 3mmy_B 42 SLEELRLEDYQA 53 (56)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 367899999764
No 90
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=30.18 E-value=9.3 Score=24.90 Aligned_cols=10 Identities=40% Similarity=1.252 Sum_probs=8.8
Q ss_pred CCceeeeccc
Q psy6818 8 TPKWFHEECF 17 (162)
Q Consensus 8 ~~~W~H~~Cf 17 (162)
...|||..|+
T Consensus 31 C~~WfH~~Cv 40 (75)
T 3kqi_A 31 CKDWFHGSCV 40 (75)
T ss_dssp TCCEEEHHHH
T ss_pred CCCCEecccc
Confidence 4789999998
No 91
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.24 E-value=18 Score=24.12 Aligned_cols=30 Identities=30% Similarity=0.707 Sum_probs=20.5
Q ss_pred CCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeec
Q psy6818 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97 (162)
Q Consensus 56 S~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~ 97 (162)
..+|.|+.|++.|..|. . ...|...-|+|+
T Consensus 26 ~~~A~Ck~C~k~ls~g~----------~--s~~GTS~L~rHL 55 (76)
T 2djr_A 26 NQYATCRLCGRQVSRGP----------G--VNVGTTALWKHL 55 (76)
T ss_dssp CSCEEESSSCCBCCCCS----------S--CCSSSCHHHHHH
T ss_pred CCEEECCCCCCccCCCC----------C--CCCchHHHHHHH
Confidence 46899999999986441 0 013556679997
No 92
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=29.11 E-value=22 Score=28.19 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=17.6
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||-.+.+
T Consensus 61 AK~iPgF~~L~~~DQi~LLK 80 (244)
T 3gyt_A 61 AKRLGAFNEISEAGKFSLLK 80 (244)
T ss_dssp HHTCGGGGGSCHHHHHHHHH
T ss_pred HccCCCcccCCHHHHHHHHH
Confidence 56899999999999988764
No 93
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=28.48 E-value=26 Score=27.43 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 67 AK~lP~F~~L~~~DQi~LLk~ 87 (244)
T 1pdu_A 67 AEKIPGYFDLLPEDQELLFQS 87 (244)
T ss_dssp HTTSTTGGGSCHHHHHHHHHH
T ss_pred HHcCCCcccCCHHHHHHHHHH
Confidence 578999999999999887553
No 94
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=26.70 E-value=34 Score=26.33 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 64 aK~lp~F~~L~~~DQ~~LLk~ 84 (236)
T 1fcy_A 64 AKRLPGFTGLSIADQITLLKA 84 (236)
T ss_dssp HHTSTTGGGSCHHHHHHHHHH
T ss_pred HhcCCCcccCCHHHHHHHHHH
Confidence 568999999999999887543
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=26.62 E-value=19 Score=23.06 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=22.7
Q ss_pred ecCCCcccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 54 AkS~Ra~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
..++.+.|..|++ .|+|-+. ..-+++||..|...
T Consensus 8 ~~~~~~~C~vC~~---~~~ll~C------------d~C~~~~H~~Cl~P 41 (66)
T 2lri_C 8 NLAPGARCGVCGD---GTDVLRC------------THCAAAFHWRCHFP 41 (66)
T ss_dssp CCCTTCCCTTTSC---CTTCEEC------------SSSCCEECHHHHCT
T ss_pred CCCCCCCcCCCCC---CCeEEEC------------CCCCCceecccCCC
Confidence 3456788999974 2444332 23678999999854
No 96
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=26.36 E-value=36 Score=26.07 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 57 aK~ip~F~~L~~~DQ~~LLk~ 77 (235)
T 2nxx_A 57 AKLVPHFTSLPLTDQVQLLRA 77 (235)
T ss_dssp HHHSTTSTTSCHHHHHHHHHH
T ss_pred HHcCCChhhCCHHHHHHHHHH
Confidence 568999999999999988553
No 97
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=25.95 E-value=33 Score=26.16 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=17.5
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 62 aK~lp~F~~L~~~DQ~~LLk 81 (232)
T 1osh_A 62 TKKLPGFQTLDHEDQIALLK 81 (232)
T ss_dssp HHTSTTGGGSCHHHHHHHHH
T ss_pred HhcCCchhhCCHHHHHHHHH
Confidence 56899999999999988754
No 98
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=25.87 E-value=34 Score=26.71 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.5
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 76 aK~iP~F~~L~~~DQi~LLk 95 (248)
T 3l0l_A 76 AKRLSGFMELCQNDQIVLLK 95 (248)
T ss_dssp HHHSTTGGGSCHHHHHHHHH
T ss_pred HhcCCCcccCCHHHHHHHHH
Confidence 56899999999999988754
No 99
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=25.79 E-value=34 Score=29.20 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=17.8
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||-.+.+
T Consensus 242 AK~iP~F~~L~~~DQi~LLk 261 (419)
T 3dzy_D 242 AKSIPGFVNLDLNDQVTLLK 261 (419)
T ss_dssp HTTSTTTTTSCHHHHHHHHH
T ss_pred hccCCCcccCCHHHHHHHHH
Confidence 57899999999999988865
No 100
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=25.23 E-value=36 Score=27.06 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=17.8
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 93 AK~iP~F~~L~~~DQi~LLk 112 (269)
T 3u9q_A 93 AKSIPGFVNLDLNDQVTLLK 112 (269)
T ss_dssp HHTSTTGGGSCHHHHHHHHH
T ss_pred HcCCCChhhcCHHHHHHHHH
Confidence 56899999999999998865
No 101
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=25.09 E-value=28 Score=26.05 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.1
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 40 aK~lp~F~~L~~~DQ~~LLk~ 60 (199)
T 3cqv_A 40 AKRIPGFRDLSQHDQVNLLKA 60 (199)
T ss_dssp HHTSGGGGGSCHHHHHHHHHH
T ss_pred HhcCCChhhCCHHHHHHHHHH
Confidence 568999999999999988654
No 102
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=24.79 E-value=33 Score=26.59 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 68 aK~ip~F~~L~~~DQ~~LLk~ 88 (244)
T 2e2r_A 68 AKHIPGFSTLSLADQMSLLQS 88 (244)
T ss_dssp HTTSTTGGGSCHHHHHHHHHH
T ss_pred HHcCCChhhCCHHHHHHHHHH
Confidence 569999999999999887553
No 103
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=24.74 E-value=34 Score=26.39 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 57 aK~lp~F~~L~~~DQ~~LLk~ 77 (244)
T 3cjw_A 57 ARNIPFFPDLQITDQVALLRL 77 (244)
T ss_dssp HHHSSSGGGSCHHHHHHHHHH
T ss_pred HHhCCChhcCCHHHHHHHHHH
Confidence 568999999999999988553
No 104
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=24.12 E-value=33 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.8
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 56 aK~ip~F~~L~~~DQ~~LLk~ 76 (243)
T 3ltx_A 56 AKNVPGYTDLSLSDQVHLIEC 76 (243)
T ss_dssp HTTSTTGGGSCHHHHHHHHHH
T ss_pred HHcCcchhcCCHHHHHHHHHH
Confidence 568999999999999887543
No 105
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=24.08 E-value=17 Score=26.99 Aligned_cols=11 Identities=27% Similarity=1.189 Sum_probs=9.5
Q ss_pred CCCceeeeccc
Q psy6818 7 KTPKWFHEECF 17 (162)
Q Consensus 7 ~~~~W~H~~Cf 17 (162)
..+.|||..|.
T Consensus 28 ~C~~WfH~~Cv 38 (174)
T 2ri7_A 28 RCQNWYHGRCV 38 (174)
T ss_dssp TTCCEEEHHHH
T ss_pred CCCchhChhhc
Confidence 36899999997
No 106
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=23.50 E-value=45 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=17.7
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..+|||.+|+.+||..+.+.
T Consensus 66 aK~lp~F~~L~~~DQ~~LLk~ 86 (243)
T 2iz2_A 66 ARNTVFFKDLKVDDQMKLLQH 86 (243)
T ss_dssp HHTCTTTTTSCHHHHHHHHHH
T ss_pred HHhChhHhhCChHHHHHHHHH
Confidence 468999999999999887543
No 107
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=23.28 E-value=46 Score=26.37 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 85 aK~lP~F~~L~~~DQi~LLk~ 105 (270)
T 1n83_A 85 AKRIDGFMELCQNDQIVLLKA 105 (270)
T ss_dssp HHHSTTTTTSCHHHHHHHHHH
T ss_pred HHcCCChhhcCHHHHHHHHHH
Confidence 568999999999999987553
No 108
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=23.18 E-value=39 Score=26.47 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=17.3
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 85 AK~lP~F~~L~~~DQ~~LLk 104 (245)
T 3n00_A 85 AKHIPGFRDLSQHDQVTLLK 104 (245)
T ss_dssp HHHSTTGGGSCHHHHHHHHH
T ss_pred HHcCCChhhCCHHHHHHHHH
Confidence 46899999999999988754
No 109
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=22.90 E-value=41 Score=26.18 Aligned_cols=20 Identities=50% Similarity=0.642 Sum_probs=17.3
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 68 aK~ip~F~~L~~~DQ~~LLk 87 (248)
T 3k6p_A 68 AKSIPGFSSLSLSDQMSVLQ 87 (248)
T ss_dssp HHTSTTGGGSCHHHHHHHHH
T ss_pred HhcCcccccCCHHHHHHHHH
Confidence 46799999999999988754
No 110
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=22.86 E-value=41 Score=25.71 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..+|||..|+.+||..+.+.
T Consensus 61 ak~ip~F~~L~~~DQ~~LLk~ 81 (240)
T 2p1t_A 61 AKRIPHFSELPLDDQVILLRA 81 (240)
T ss_dssp HHTSTTGGGSCHHHHHHHHHH
T ss_pred HHhCcChhcCCHHHHHHHHHH
Confidence 468999999999999988654
No 111
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=22.79 E-value=40 Score=26.16 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 76 aK~ip~F~~L~~~DQ~~LLk~ 96 (254)
T 3b0t_A 76 AKMIPGFRDLTSEDQIVLLKS 96 (254)
T ss_dssp HHHSTTGGGSCHHHHHHHHHH
T ss_pred hhCCCCcccCCHHHHHHHHHH
Confidence 568999999999999887553
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.49 E-value=29 Score=24.43 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=10.1
Q ss_pred CCCceeeecccc
Q psy6818 7 KTPKWFHEECFW 18 (162)
Q Consensus 7 ~~~~W~H~~Cff 18 (162)
..|.|||+.|.-
T Consensus 34 ~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 34 DCPKAYHLLCLN 45 (107)
T ss_dssp TCCCEECTGGGT
T ss_pred CCCcccccccCc
Confidence 478999999974
No 113
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=22.46 E-value=45 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 72 aK~lp~F~~L~~~DQ~~LLk~ 92 (248)
T 2nxx_E 72 AKRLPGFDKLLREDQIALLKA 92 (248)
T ss_dssp HHTSTTGGGSCHHHHHHHHHH
T ss_pred HHcCCchhhCCHHHHHHHHHH
Confidence 568999999999999987553
No 114
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.16 E-value=49 Score=22.36 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=20.6
Q ss_pred cccccccccccCCCeEEEEEeecCCCCcccCCcCeeeecCCccc
Q psy6818 59 STCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102 (162)
Q Consensus 59 a~Ck~C~~kI~KgeLRig~~~~~~~~~~~~g~~~~WyH~~Cf~~ 102 (162)
..|..|+..=..+.|-+. ...+.|||..|.-.
T Consensus 17 ~~C~vC~~~~~~~~ll~C------------D~C~~~~H~~Cl~P 48 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFC------------DGCDDNYHIFCLLP 48 (92)
T ss_dssp CCCSSSCCSGGGGGCEEC------------TTTCCEECSSSSSS
T ss_pred CCCccCCCcCCCCCEEEc------------CCCCchhccccCCC
Confidence 468888765433444442 23678999999864
No 115
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=22.10 E-value=41 Score=26.55 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||..|+.+||..+.+.
T Consensus 103 aK~ip~F~~L~~~DQ~~LLk~ 123 (282)
T 1lbd_A 103 AKRIPHFSELPLDDQVILLRA 123 (282)
T ss_dssp HHHSTTGGGSCHHHHHHHHHH
T ss_pred HHhCcChhcCCHHHHHHHHHH
Confidence 467999999999999988653
No 116
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=21.90 E-value=45 Score=25.78 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 55 aK~lp~F~~L~~~DQ~~LLk~ 75 (248)
T 1xpc_A 55 AKRVPGFVDLTLHDQVHLLEC 75 (248)
T ss_dssp HHHSTTGGGSCHHHHHHHHHH
T ss_pred HHcCCccccCCHHHHHHHHHH
Confidence 568999999999999988553
No 117
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=21.71 E-value=44 Score=26.41 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.6
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 88 aK~lP~F~~L~~~DQi~LLk 107 (266)
T 3kmr_A 88 AKQLPGFTTLTIADQITLLK 107 (266)
T ss_dssp HHTSTTGGGSCHHHHHHHHH
T ss_pred HHcCcChhhCCHHHHHHHHH
Confidence 46899999999999988865
No 118
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=21.61 E-value=43 Score=25.84 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 65 aK~lp~F~~L~~~DQ~~LLk~ 85 (246)
T 1ymt_A 65 ARRCMVFKELEVADQMTLLQN 85 (246)
T ss_dssp HHHSTTGGGSCHHHHHHHHHH
T ss_pred HHhChhHHhCCHHHHHHHHHH
Confidence 568999999999999887553
No 119
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=21.43 E-value=49 Score=25.39 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=17.2
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..+|||.+|+.+||..+.+
T Consensus 53 aK~lp~F~~L~~~DQ~~LLk 72 (240)
T 3oll_A 53 AKKIPGFVELSLFDQVRLLE 72 (240)
T ss_dssp HHTSTTGGGSCHHHHHHHHH
T ss_pred HHhCcCcccCCHHHHHHHHH
Confidence 46799999999999988754
No 120
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=21.33 E-value=48 Score=26.82 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.5
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 122 AK~iP~F~~L~~~DQi~LLk 141 (302)
T 2hc4_A 122 AKMIPGFRDLTAEDQIALLK 141 (302)
T ss_dssp HTTSTTTTTSCHHHHHHHHH
T ss_pred HHcCCChhhCCHHHHHHHHH
Confidence 57899999999999988754
No 121
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=21.22 E-value=44 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 88 aK~lp~F~~L~~~DQi~LLk~ 108 (266)
T 2r40_D 88 AKGLPGFAKISQSDQITLLKA 108 (266)
T ss_dssp HHHSTTGGGSCHHHHHHHHHH
T ss_pred HhcCcccccCCHHHHHHHHHH
Confidence 568999999999999887553
No 122
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=21.13 E-value=43 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.8
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 54 aK~iP~F~~L~~~DQ~~LLk~ 74 (249)
T 3p0u_A 54 ARSIPAFQALGQDCNTSLVRA 74 (249)
T ss_dssp HHTCTTTGGGCHHHHHHHHHT
T ss_pred HHcCcchhcCCHHHHHHHHHH
Confidence 467999999999999888643
No 123
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=20.96 E-value=47 Score=26.29 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 79 AK~lP~F~~L~~~DQi~LLk~ 99 (271)
T 1l2j_A 79 AKKIPGFVELSLFDQVRLLES 99 (271)
T ss_dssp HHTSTTGGGSCHHHHHHHHHT
T ss_pred HHhCcccccCCHHHHHHHHHH
Confidence 568999999999999888553
No 124
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=20.94 E-value=48 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=17.2
Q ss_pred CCCCCCCcCCCHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEA 132 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~ 132 (162)
+..||||.+|+.+||..+.+
T Consensus 76 aK~ip~F~~L~~~DQ~~LLk 95 (257)
T 3plz_A 76 ARSSIFFRELKVDDQMKLLQ 95 (257)
T ss_dssp HHHSTTGGGSCHHHHHHHHH
T ss_pred HHcCcChhcCCHHHHHHHHH
Confidence 46799999999999988754
No 125
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=20.89 E-value=50 Score=25.87 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 94 aK~ip~F~~L~~~DQ~~LLk~ 114 (271)
T 1ovl_A 94 AEKIPGFADLPKADQDLLFES 114 (271)
T ss_dssp HHTSTTGGGSCHHHHHHHHHH
T ss_pred HHcCCCcccCChHHHHHHHHH
Confidence 568999999999999888553
No 126
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.87 E-value=20 Score=22.36 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=10.1
Q ss_pred CCceeeeccccC
Q psy6818 8 TPKWFHEECFWK 19 (162)
Q Consensus 8 ~~~W~H~~Cff~ 19 (162)
.+.|||+.|.-.
T Consensus 29 C~~~fH~~Cl~p 40 (61)
T 2l5u_A 29 CPRAYHMVCLDP 40 (61)
T ss_dssp SSCEEEHHHHCT
T ss_pred CChhhhhhccCC
Confidence 588999999865
No 127
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=20.19 E-value=48 Score=25.92 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.8
Q ss_pred CCCCCCCcCCCHHHHHHHHHH
Q psy6818 113 GKQIPGFGSLEKKDQKIVEAT 133 (162)
Q Consensus 113 ~e~I~Gf~~L~~eDQ~~Ik~~ 133 (162)
+..||||.+|+.+||..+.+.
T Consensus 62 aK~lp~F~~L~~~DQ~~LLk~ 82 (264)
T 1g2n_A 62 ARDIPHFSQLEMEDQILLIKG 82 (264)
T ss_dssp HHHSTTGGGSCHHHHHHHHHH
T ss_pred HHcCCChhcCCHHHHHHHHHH
Confidence 468999999999999887543
Done!