Your job contains 1 sequence.
>psy6818
SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKSNRST
CRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFG
SLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6818
(162 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010247 - symbol:Parp "Poly-(ADP-ribose) polymeras... 226 1.3e-27 2
UNIPROTKB|F1NL05 - symbol:PARP1 "Poly [ADP-ribose] polyme... 188 9.3e-26 3
RGD|2053 - symbol:Parp1 "poly (ADP-ribose) polymerase 1" ... 197 6.3e-24 3
UNIPROTKB|F1Q2M3 - symbol:PARP1 "Uncharacterized protein"... 197 1.1e-23 3
UNIPROTKB|J9NXE3 - symbol:PARP1 "Uncharacterized protein"... 197 1.5e-22 3
MGI|MGI:1340806 - symbol:Parp1 "poly (ADP-ribose) polymer... 188 1.8e-21 2
UNIPROTKB|F1MU08 - symbol:PARP1 "Poly [ADP-ribose] polyme... 166 1.2e-20 3
UNIPROTKB|P18493 - symbol:PARP1 "Poly [ADP-ribose] polyme... 158 8.0e-20 3
UNIPROTKB|I3LDH3 - symbol:PARP1 "Uncharacterized protein"... 199 7.5e-16 2
UNIPROTKB|P09874 - symbol:PARP1 "Poly [ADP-ribose] polyme... 198 9.4e-16 2
UNIPROTKB|F1P5K6 - symbol:PARP1 "Poly [ADP-ribose] polyme... 188 4.0e-15 2
ZFIN|ZDB-GENE-030131-3955 - symbol:parp1 "poly (ADP-ribos... 202 6.4e-15 1
UNIPROTKB|P26446 - symbol:PARP1 "Poly [ADP-ribose] polyme... 188 8.3e-15 2
UNIPROTKB|Q5VX84 - symbol:PARP1 "Poly [ADP-ribose] polyme... 127 2.6e-08 1
UNIPROTKB|Q5VX85 - symbol:PARP1 "Poly [ADP-ribose] polyme... 127 2.6e-08 1
TAIR|locus:2086355 - symbol:AT3G14890 species:3702 "Arabi... 136 4.4e-08 1
UNIPROTKB|K7ENR9 - symbol:LIG3 "DNA ligase 3" species:960... 108 7.2e-05 1
TAIR|locus:2042511 - symbol:PARP1 "POLY(ADP-RIBOSE) POLYM... 114 0.00011 1
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 112 0.00024 1
ZFIN|ZDB-GENE-030131-8453 - symbol:lig3 "ligase III, DNA,... 111 0.00025 1
UNIPROTKB|I3LN18 - symbol:LIG3 "Uncharacterized protein" ... 109 0.00031 1
UNIPROTKB|K7ERZ5 - symbol:LIG3 "DNA ligase 3" species:960... 108 0.00047 1
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 108 0.00094 1
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 108 0.00095 1
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 108 0.00096 1
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 108 0.00097 1
>FB|FBgn0010247 [details] [associations]
symbol:Parp "Poly-(ADP-ribose) polymerase" species:7227
"Drosophila melanogaster" [GO:0003950 "NAD+ ADP-ribosyltransferase
activity" evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006471 "protein ADP-ribosylation" evidence=IMP;NAS;TAS]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA;TAS] [GO:0005703 "polytene chromosome
puff" evidence=IDA;TAS] [GO:0051276 "chromosome organization"
evidence=TAS] [GO:0035079 "polytene chromosome puffing"
evidence=TAS] [GO:0007552 "metamorphosis" evidence=TAS] [GO:0009303
"rRNA transcription" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0005700 "polytene
chromosome" evidence=IDA;TAS] [GO:0006963 "positive regulation of
antibacterial peptide biosynthetic process" evidence=IMP]
[GO:0005719 "nuclear euchromatin" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IMP] [GO:0035080 "heat shock-mediated
polytene chromosome puffing" evidence=IEP;IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051457 "maintenance of
protein location in nucleus" evidence=IMP] [GO:0005694 "chromosome"
evidence=IDA] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0042393 "histone binding" evidence=IPI]
[GO:0035363 "histone locus body" evidence=IDA] [GO:0015030 "Cajal
body" evidence=IDA] [GO:0030576 "Cajal body organization"
evidence=IMP] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982
Pfam:PF00644 Pfam:PF00645 Pfam:PF02877 Pfam:PF08063
PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064 PROSITE:PS51059
PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005730
GO:GO:0006355 GO:GO:0051287 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045087 GO:GO:0016568 GO:GO:0007552
GO:GO:0043484 GO:GO:0005719 GO:GO:0009303 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051457 GO:GO:0006471
GO:GO:0006963 GO:GO:0005703 GO:GO:0003950 GO:GO:0007000
Gene3D:3.30.1740.10 GO:GO:0035080 eggNOG:NOG243963 KO:K10798
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 Gene3D:2.20.140.10
ChiTaRS:PARP1 GeneTree:ENSGT00390000017341 EMBL:D13806
EMBL:AF051548 EMBL:AF051544 EMBL:AF051545 EMBL:AF051546
EMBL:AF051547 EMBL:AF533701 EMBL:CM000459 EMBL:BT015238
EMBL:AY118947 PIR:A47474 RefSeq:NP_001015396.2
RefSeq:NP_001104452.1 UniGene:Dm.7847 ProteinModelPortal:P35875
SMR:P35875 DIP:DIP-23413N MINT:MINT-836001 STRING:P35875
PaxDb:P35875 PRIDE:P35875 EnsemblMetazoa:FBtr0113885 GeneID:3355109
KEGG:dme:Dmel_CG40411 CTD:3355109 FlyBase:FBgn0010247
InParanoid:P35875 OrthoDB:EOG4JM64P PhylomeDB:P35875
GenomeRNAi:3355109 NextBio:850624 Bgee:P35875 GermOnline:CG40411
Uniprot:P35875
Length = 994
Score = 226 (84.6 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
IEYAKS+RSTCRGCE KI K +R+ K YD++ G GG P W+HL CF +R +L +
Sbjct: 113 IEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQLRSELGWF 172
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSL 137
ASG+ +PGF SL DQ V+ +P +
Sbjct: 173 ASGEDMPGFQSLADDDQAKVKNAIPPI 199
Score = 123 (48.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIE 52
S F D K P WFH+ CF+K RP ++ DI N+ +LR DQ+ + + ++ NI+
Sbjct: 39 SAFHDAKVPNWFHKTCFFKNQRPSSVGDIQNIGNLRFADQKEL-TDLVENIQ 89
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYA++ R+TC+GC++ I+K +R++ M + + P W+H +CF + +
Sbjct: 10 EYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCF----FKNQRPS 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I G+L DQK + + ++ + +S
Sbjct: 63 SVGDIQNIGNLRFADQKELTDLVENIQEVIS 93
>UNIPROTKB|F1NL05 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0032869 "cellular response to insulin stimulus"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0070212
"protein poly-ADP-ribosylation" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005635 GO:GO:0005730 GO:GO:0051287 GO:GO:0032869
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0005667
GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000723 GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 Gene3D:2.20.140.10
IPI:IPI00823125 GeneTree:ENSGT00390000017341 EMBL:AADN02012180
EMBL:AADN02012181 EMBL:AADN02012182 Ensembl:ENSGALT00000038829
ArrayExpress:F1NL05 Uniprot:F1NL05
Length = 1015
Score = 188 (71.2 bits), Expect = 9.3e-26, Sum P(3) = 9.3e-26
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF-S 110
EYAKSNRSTC+GCE KI KG+IR+SK ++ ++ G I WYH CF + R +L F
Sbjct: 116 EYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQL-GMIDNWYHPDCFVSRRAELGFLP 174
Query: 111 ASGK-QIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
A G Q+ GF L+ +D++ ++ LP+ ++G K + +
Sbjct: 175 AYGATQLLGFSILKAEDKETLKKQLPATKTEGKRKGEEV 213
Score = 127 (49.8 bits), Expect = 9.3e-26, Sum P(3) = 9.3e-26
Identities = 24/47 (51%), Positives = 27/47 (57%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI 47
SP FDGK P W H CFWK+ R + DI LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARIVSHTDIDGFPELRWEDQEKIKKAI 87
Score = 117 (46.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLALMV----QSPMFDGKVPHWHHYSCFWKRARI---- 63
Query: 110 SASGKQIPGFGSLEKKDQ-KIVEA 132
S I GF L +DQ KI +A
Sbjct: 64 -VSHTDIDGFPELRWEDQEKIKKA 86
Score = 39 (18.8 bits), Expect = 9.3e-26, Sum P(3) = 9.3e-26
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DA+ HFL
Sbjct: 611 SKEDAVEHFL 620
>RGD|2053 [details] [associations]
symbol:Parp1 "poly (ADP-ribose) polymerase 1" species:10116 "Rattus
norvegicus" [GO:0000723 "telomere maintenance" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003950 "NAD+
ADP-ribosyltransferase activity" evidence=ISO;IDA;IMP] [GO:0005634
"nucleus" evidence=ISO;NAS;IDA] [GO:0005635 "nuclear envelope"
evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0006259 "DNA metabolic process"
evidence=ISO] [GO:0006284 "base-excision repair" evidence=IEA;ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006471
"protein ADP-ribosylation" evidence=ISO;IDA] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016540 "protein autoprocessing" evidence=IDA] [GO:0016763
"transferase activity, transferring pentosyl groups" evidence=NAS]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0023019 "signal
transduction involved in regulation of gene expression" evidence=IMP]
[GO:0032869 "cellular response to insulin stimulus" evidence=IEA;ISO]
[GO:0040009 "regulation of growth rate" evidence=IEA;ISO] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=IDA]
[GO:0043234 "protein complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0047485 "protein N-terminus binding"
evidence=IEA;ISO] [GO:0051287 "NAD binding" evidence=IDA] [GO:0060391
"positive regulation of SMAD protein import into nucleus"
evidence=IMP] [GO:0070212 "protein poly-ADP-ribosylation"
evidence=ISO;IMP] [GO:0070412 "R-SMAD binding" evidence=IPI]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IMP] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644
Pfam:PF00645 Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489
PROSITE:PS00347 PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060
InterPro:IPR001357 Pfam:PF00533 RGD:2053 GO:GO:0005634 GO:GO:0005635
GO:GO:0005730 GO:GO:0051287 GO:GO:0032869 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0005667
GO:GO:0007179 GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0000723 GO:GO:0060391 GO:GO:0023019
GO:GO:0016540 GO:GO:0003950 GO:GO:0042769 Gene3D:3.30.1740.10
GO:GO:2000679 GO:GO:0070212 eggNOG:NOG243963 HOGENOM:HOG000030402
KO:K10798 OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893
Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142
HOVERGEN:HBG053513 OrthoDB:EOG4PG609 Gene3D:2.20.140.10 EMBL:U94340
EMBL:BC085765 EMBL:X65496 EMBL:X65497 IPI:IPI00231678 PIR:S21163
PIR:S26057 RefSeq:NP_037195.1 UniGene:Rn.11327 PDB:2LE0 PDBsum:2LE0
ProteinModelPortal:P27008 SMR:P27008 STRING:P27008 PhosphoSite:P27008
PRIDE:P27008 Ensembl:ENSRNOT00000004232 GeneID:25591 KEGG:rno:25591
UCSC:RGD:2053 GeneTree:ENSGT00390000017341 InParanoid:P27008
BindingDB:P27008 ChEMBL:CHEMBL4664 NextBio:607267
Genevestigator:P27008 GermOnline:ENSRNOG00000003084 Uniprot:P27008
Length = 1014
Score = 197 (74.4 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
Identities = 45/107 (42%), Positives = 66/107 (61%)
Query: 46 KILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH +CF
Sbjct: 108 KTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYHPTCFVKN 166
Query: 104 RLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
R +L F S Q+ GF L +D++ ++ LP++ S+G K D +
Sbjct: 167 RDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAVKSEGKRKCDEV 213
Score = 128 (50.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IR--QPDTEVDGFSELRWDDQQKVKKT 88
Score = 102 (41.0 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLD--IHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK D + + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDTEVDGFSELRWDDQQKVK 86
Score = 45 (20.9 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 23/87 (26%), Positives = 36/87 (41%)
Query: 63 GCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGF--- 119
G E K+ GE+ V K + K G + E ++L L+ A+ G
Sbjct: 483 GAEVKVEPGEVVVPKGKSAAPSKKSKGAVKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHS 542
Query: 120 GSLEKKDQKIVEATLPSLSDGVSKTDA 146
+ +K K+ ATL L D V T++
Sbjct: 543 AHVLEKGGKVFSATL-GLVDIVKGTNS 568
Score = 37 (18.1 bits), Expect = 6.3e-24, Sum P(3) = 6.3e-24
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DA+ HF+
Sbjct: 606 SKEDAVEHFM 615
>UNIPROTKB|F1Q2M3 [details] [associations]
symbol:PARP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003950
"NAD+ ADP-ribosyltransferase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006471 "protein
ADP-ribosylation" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 GO:GO:0005634
GO:GO:0051287 GO:GO:0003677 GO:GO:0008270 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471 GO:GO:0003950
Gene3D:3.30.1740.10 OMA:SRYWIFR Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341
EMBL:AAEX03005272 Ensembl:ENSCAFT00000025541 Uniprot:F1Q2M3
Length = 976
Score = 197 (74.4 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 44/99 (44%), Positives = 61/99 (61%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRSTC+GC KI KG+IR+SK D ++ ++ G I WYH +CF R +L F
Sbjct: 76 EYAKSNRSTCKGCLEKIEKGQIRLSKKMLDPEKPQL-GMIDRWYHPNCFVKNREELGFRP 134
Query: 112 --SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
S Q GFG L +D++ ++ LP + S+G K D +
Sbjct: 135 EYSASQFKGFGLLTPEDKEALKKQLPGVKSEGKRKGDEV 173
Score = 102 (41.0 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK D+ + LR DQ+ +K
Sbjct: 1 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 46
Score = 34 (17.0 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK +AI HF+
Sbjct: 568 SKEEAIEHFM 577
>UNIPROTKB|J9NXE3 [details] [associations]
symbol:PARP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051287 "NAD binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006471 "protein
ADP-ribosylation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005634 GO:GO:0051287 GO:GO:0003677 GO:GO:0008270
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471
GO:GO:0003950 Gene3D:3.30.1740.10 KO:K10798 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 CTD:142 Gene3D:2.20.140.10
GeneTree:ENSGT00390000017341 EMBL:AAEX03005272 RefSeq:XP_547506.2
Ensembl:ENSCAFT00000045712 GeneID:490385 KEGG:cfa:490385
Uniprot:J9NXE3
Length = 972
Score = 197 (74.4 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 44/99 (44%), Positives = 61/99 (61%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRSTC+GC KI KG+IR+SK D ++ ++ G I WYH +CF R +L F
Sbjct: 74 EYAKSNRSTCKGCLEKIEKGQIRLSKKMLDPEKPQL-GMIDRWYHPNCFVKNREELGFRP 132
Query: 112 --SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
S Q GFG L +D++ ++ LP + S+G K D +
Sbjct: 133 EYSASQFKGFGLLTPEDKEALKKQLPGVKSEGKRKGDEV 171
Score = 91 (37.1 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 4 FDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK 44
FDGK P W+H CFWK D+ + LR DQ+ +K
Sbjct: 2 FDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 44
Score = 34 (17.0 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK +AI HF+
Sbjct: 564 SKEEAIEHFM 573
>MGI|MGI:1340806 [details] [associations]
symbol:Parp1 "poly (ADP-ribose) polymerase family, member 1"
species:10090 "Mus musculus" [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003950
"NAD+ ADP-ribosyltransferase activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;TAS] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006259 "DNA metabolic process" evidence=IMP]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006284 "base-excision
repair" evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006471 "protein ADP-ribosylation"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007179 "transforming growth factor beta receptor
signaling pathway" evidence=ISO] [GO:0008134 "transcription factor
binding" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016540 "protein autoprocessing" evidence=ISO] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016757 "transferase
activity, transferring glycosyl groups" evidence=IEA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0023019 "signal transduction
involved in regulation of gene expression" evidence=ISO]
[GO:0032869 "cellular response to insulin stimulus" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=ISO]
[GO:0043234 "protein complex" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=ISO] [GO:0051287
"NAD binding" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] [GO:0070212
"protein poly-ADP-ribosylation" evidence=ISO] [GO:0070412 "R-SMAD
binding" evidence=ISO] [GO:2000679 "positive regulation of
transcription regulatory region DNA binding" evidence=ISO]
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
MGI:MGI:1340806 Pfam:PF00533 GO:GO:0005737 GO:GO:0043234
GO:GO:0005654 GO:GO:0005730 GO:GO:0006355 GO:GO:0051287
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006471 GO:GO:0000723 GO:GO:0003950
Gene3D:3.30.1740.10 eggNOG:NOG243963 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 HOVERGEN:HBG053513 OrthoDB:EOG4PG609
Gene3D:2.20.140.10 EMBL:X14206 EMBL:AF126717 IPI:IPI00112473
IPI:IPI00759945 PIR:S04200 UniGene:Mm.277779
ProteinModelPortal:P11103 SMR:P11103 DIP:DIP-39371N IntAct:P11103
MINT:MINT-237428 STRING:P11103 PhosphoSite:P11103 PaxDb:P11103
PRIDE:P11103 InParanoid:P11103 BindingDB:P11103 ChEMBL:CHEMBL3740
CleanEx:MM_PARP1 Genevestigator:P11103
GermOnline:ENSMUSG00000026496 Uniprot:P11103
Length = 1013
Score = 188 (71.2 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 43/107 (40%), Positives = 65/107 (60%)
Query: 46 KILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH +CF
Sbjct: 108 KTLGDFAAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYHPTCFVKK 166
Query: 104 RLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 167 RDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 127 (49.8 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 31/90 (34%), Positives = 46/90 (51%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L ++YAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVQYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GQSIRHP--DVEVDGFSELRWDDQQKVKKT 88
Score = 103 (41.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK + D+ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGQSIRHPDVEVDGFSELRWDDQQKVK 86
>UNIPROTKB|F1MU08 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9913
"Bos taurus" [GO:0070212 "protein poly-ADP-ribosylation"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032869 "cellular response to insulin stimulus" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0051287 "NAD
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005635 GO:GO:0005730 GO:GO:0051287 GO:GO:0032869
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0005667
GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000723 GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 IPI:IPI00697783
UniGene:Bt.4803 Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341
EMBL:DAAA02042671 Ensembl:ENSBTAT00000001113 Uniprot:F1MU08
Length = 1016
Score = 166 (63.5 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL----E 108
YAKSNRSTC+ C KI KG++R+SK D+ ++ G + WYH CF R +L E
Sbjct: 120 YAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQL-GMVDCWYHPKCFVQKREELGFRPE 178
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSL 137
FSAS Q+ GF L +DQ+ ++ LP++
Sbjct: 179 FSAS--QLMGFSVLTAEDQETLKKQLPAI 205
Score = 132 (51.5 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C+ I K IR++ M Q M G IP WYHLSCF V
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIRMAFMV----QSPMFDGKIPHWYHLSCFWKVGFS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVE 131
+ ++ GF L DQ+ ++
Sbjct: 64 IWHP--DVEVEGFSELRWDDQQTIK 86
Score = 101 (40.6 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 1 SPFFDGKTPKWFHEECFWKKN----RPKALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK P +++ + LR DQ+ IK
Sbjct: 41 SPMFDGKIPHWYHLSCFWKVGFSIWHPD--VEVEGFSELRWDDQQTIK 86
Score = 38 (18.4 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DAI HF+
Sbjct: 608 SKEDAIEHFM 617
>UNIPROTKB|P18493 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9913
"Bos taurus" [GO:0042802 "identical protein binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0005635 "nuclear
envelope" evidence=ISS] [GO:0003950 "NAD+ ADP-ribosyltransferase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006471 "protein ADP-ribosylation" evidence=IEA]
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005635 GO:GO:0005730 GO:GO:0006355
GO:GO:0051287 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0006351 GO:GO:0042802 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471 GO:GO:0003950
Gene3D:3.30.1740.10 eggNOG:NOG243963 HOGENOM:HOG000030402 KO:K10798
Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406 SMART:SM00773
SUPFAM:SSF47587 SUPFAM:SSF142921 EMBL:D90073 EMBL:X06986
EMBL:X06987 IPI:IPI00697783 PIR:JS0428 RefSeq:NP_777176.1
UniGene:Bt.4803 ProteinModelPortal:P18493 SMR:P18493 STRING:P18493
PRIDE:P18493 GeneID:286764 KEGG:bta:286764 CTD:142
HOVERGEN:HBG053513 InParanoid:P18493 OrthoDB:EOG4PG609
BindingDB:P18493 ChEMBL:CHEMBL5691 NextBio:20806425
Gene3D:2.20.140.10 Uniprot:P18493
Length = 1016
Score = 158 (60.7 bits), Expect = 8.0e-20, Sum P(3) = 8.0e-20
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA- 111
YAKSNRSTC+ C KI KG++R+SK D+ ++ G + WYH CF R +L F
Sbjct: 120 YAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQL-GMVDCWYHPKCFVQKREELGFRPE 178
Query: 112 -SGKQIPGFGSLEKKDQKIVEATLPSL 137
S + GF L +DQ+ ++ LP++
Sbjct: 179 FSATHLMGFSVLTAEDQETLKKQLPAI 205
Score = 131 (51.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 34/98 (34%), Positives = 51/98 (52%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
L +EYAKS R++C+ C+ I K IR++ M +S G IP WYHLSCF V +
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIRMAFM-VESPM--FDGKIPHWYHLSCFWKVGFSI 64
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTD 145
++ GF L DQ+ T+ +++ +TD
Sbjct: 65 WHP--DVEVEGFSELRWDDQQ----TIKKMAETGGRTD 96
Score = 101 (40.6 bits), Expect = 8.0e-20, Sum P(3) = 8.0e-20
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 1 SPFFDGKTPKWFHEECFWKKN----RPKALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK P +++ + LR DQ+ IK
Sbjct: 41 SPMFDGKIPHWYHLSCFWKVGFSIWHPD--VEVEGFSELRWDDQQTIK 86
Score = 38 (18.4 bits), Expect = 8.0e-20, Sum P(3) = 8.0e-20
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DAI HF+
Sbjct: 608 SKEDAIEHFM 617
>UNIPROTKB|I3LDH3 [details] [associations]
symbol:PARP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070212 "protein poly-ADP-ribosylation" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0032869 "cellular
response to insulin stimulus" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0051287 "NAD
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005635 GO:GO:0005730 GO:GO:0051287 GO:GO:0032869
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0005667
GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000723 GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212
KO:K10798 OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893
Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142
Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341 EMBL:FP312825
EMBL:FP340210 RefSeq:XP_003357689.1 Ensembl:ENSSSCT00000028077
GeneID:100621034 KEGG:ssc:100621034 Uniprot:I3LDH3
Length = 1018
Score = 199 (75.1 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 53/140 (37%), Positives = 77/140 (55%)
Query: 15 ECFWK-KNRPKALLDIHNVTSLRHQDQEMIKS-KILGNI--EYAKSNRSTCRGCEAKIAK 70
E W + + K + VT + QD K+ K LG+ EYAKSNRSTC+GC KI K
Sbjct: 76 ELRWDDQQKVKKTAEAGGVTG-KGQDGVGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEK 134
Query: 71 GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQK 128
G +R+SK D ++ ++ G I WYH +CF R +L F S Q+ GF L +D++
Sbjct: 135 GHVRLSKKMLDPEKPQL-GMIDRWYHPNCFVQNREELGFRPEYSASQLKGFSLLTAEDKE 193
Query: 129 IVEATLPSL-SDGVSKTDAI 147
++ LP + S+G K D +
Sbjct: 194 ALKKQLPGIKSEGKRKGDEV 213
Score = 124 (48.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHA 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDI--EVDGFSELRWDDQQKVKKT 88
Score = 38 (18.4 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DAI HF+
Sbjct: 610 SKEDAIDHFM 619
>UNIPROTKB|P09874 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0016540 "protein autoprocessing" evidence=IEA]
[GO:0040009 "regulation of growth rate" evidence=IEA] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] [GO:0003950 "NAD+
ADP-ribosyltransferase activity" evidence=IDA;TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006471 "protein ADP-ribosylation" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0070212 "protein poly-ADP-ribosylation"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0032869 "cellular response to insulin stimulus" evidence=IDA]
[GO:0005667 "transcription factor complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
EMBL:M18112 Pfam:PF00533 GO:GO:0005635 Reactome:REACT_111102
GO:GO:0005730 GO:GO:0051287 GO:GO:0032869 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
Pathway_Interaction_DB:caspase_pathway EMBL:CH471098 GO:GO:0005667
GO:GO:0000122 GO:GO:0007179 GO:GO:0040009 GO:GO:0006367
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000723
Pathway_Interaction_DB:faspathway EMBL:AL359704 GO:GO:0016540
GO:GO:0003950 GO:GO:0042769 Gene3D:3.30.1740.10 GO:GO:0070212
BRENDA:2.4.2.30 eggNOG:NOG243963 HOGENOM:HOG000030402 KO:K10798
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142
HOVERGEN:HBG053513 OrthoDB:EOG4PG609 Gene3D:2.20.140.10 EMBL:J03473
EMBL:M32721 EMBL:M29786 EMBL:M29545 EMBL:M29766 EMBL:M29767
EMBL:M29768 EMBL:M29769 EMBL:M29770 EMBL:M29771 EMBL:M29772
EMBL:M29773 EMBL:M29774 EMBL:M29775 EMBL:M29776 EMBL:M29777
EMBL:M29778 EMBL:M29779 EMBL:M29780 EMBL:M29781 EMBL:M29783
EMBL:M29784 EMBL:M29785 EMBL:M29544 EMBL:M29782 EMBL:AF524947
EMBL:AL359742 EMBL:BC037545 EMBL:X56140 EMBL:X56141 EMBL:X16674
EMBL:M60436 EMBL:M17081 IPI:IPI00449049 PIR:A29725
RefSeq:NP_001609.2 UniGene:Hs.177766 PDB:1UK0 PDB:1UK1 PDB:1WOK
PDB:2COK PDB:2CR9 PDB:2CS2 PDB:2DMJ PDB:2JVN PDB:2L30 PDB:2L31
PDB:2RCW PDB:2RD6 PDB:2RIQ PDB:3GJW PDB:3GN7 PDB:3L3L PDB:3L3M
PDB:3OD8 PDB:3ODA PDB:3ODC PDB:3ODE PDB:4AV1 PDB:4DQY PDBsum:1UK0
PDBsum:1UK1 PDBsum:1WOK PDBsum:2COK PDBsum:2CR9 PDBsum:2CS2
PDBsum:2DMJ PDBsum:2JVN PDBsum:2L30 PDBsum:2L31 PDBsum:2RCW
PDBsum:2RD6 PDBsum:2RIQ PDBsum:3GJW PDBsum:3GN7 PDBsum:3L3L
PDBsum:3L3M PDBsum:3OD8 PDBsum:3ODA PDBsum:3ODC PDBsum:3ODE
PDBsum:4AV1 PDBsum:4DQY ProteinModelPortal:P09874 SMR:P09874
DIP:DIP-38N IntAct:P09874 MINT:MINT-104344 STRING:P09874
PhosphoSite:P09874 DMDM:130781 SWISS-2DPAGE:P09874 PaxDb:P09874
PeptideAtlas:P09874 PRIDE:P09874 DNASU:142 Ensembl:ENST00000366794
GeneID:142 KEGG:hsa:142 UCSC:uc001hqd.4 GeneCards:GC01M224102
H-InvDB:HIX0023551 HGNC:HGNC:270 HPA:CAB000147 HPA:CAB003839
HPA:CAB003840 HPA:HPA045168 MIM:173870 neXtProt:NX_P09874
PharmGKB:PA32 InParanoid:P09874 PhylomeDB:P09874 BindingDB:P09874
ChEMBL:CHEMBL3105 ChiTaRS:PARP1 EvolutionaryTrace:P09874
GenomeRNAi:142 NextBio:565 PMAP-CutDB:P09874 ArrayExpress:P09874
Bgee:P09874 CleanEx:HS_PARP1 Genevestigator:P09874
GermOnline:ENSG00000143799 Uniprot:P09874
Length = 1014
Score = 198 (74.8 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 53/140 (37%), Positives = 77/140 (55%)
Query: 15 ECFWK-KNRPKALLDIHNVTSLRHQDQEMIKS-KILGNI--EYAKSNRSTCRGCEAKIAK 70
E W + + K + VT + QD K+ K LG+ EYAKSNRSTC+GC KI K
Sbjct: 76 ELRWDDQQKVKKTAEAGGVTG-KGQDGIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEK 134
Query: 71 GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQK 128
G++R+SK D ++ ++ G I WYH CF R +L F S Q+ GF L +D++
Sbjct: 135 GQVRLSKKMVDPEKPQL-GMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKE 193
Query: 129 IVEATLPSL-SDGVSKTDAI 147
++ LP + S+G K D +
Sbjct: 194 ALKKQLPGVKSEGKRKGDEV 213
Score = 127 (49.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHP--DVEVDGFSELRWDDQQKVKKT 88
Score = 38 (18.4 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DAI HF+
Sbjct: 606 SKEDAIEHFM 615
>UNIPROTKB|F1P5K6 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003950
"NAD+ ADP-ribosyltransferase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006471 "protein ADP-ribosylation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005634 GO:GO:0051287 GO:GO:0003677 GO:GO:0008270
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471
GO:GO:0003950 Gene3D:3.30.1740.10 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 GeneTree:ENSGT00390000017341 EMBL:AADN02012180
EMBL:AADN02012181 EMBL:AADN02012182 IPI:IPI00588387
Ensembl:ENSGALT00000015016 ArrayExpress:F1P5K6 Uniprot:F1P5K6
Length = 1009
Score = 188 (71.2 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF-S 110
EYAKSNRSTC+GCE KI KG+IR+SK ++ ++ G I WYH CF + R +L F
Sbjct: 114 EYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQL-GMIDNWYHPDCFVSRRAELGFLP 172
Query: 111 ASGK-QIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
A G Q+ GF L+ +D++ ++ LP+ ++G K + +
Sbjct: 173 AYGATQLLGFSILKAEDKETLKKQLPATKTEGKRKGEEV 211
Score = 130 (50.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 29/85 (34%), Positives = 38/85 (44%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKSNRST 60
SP FDGK P W H CFWK+ R + DI LR +DQE IK I ++ K
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARIVSHTDIDGFPELRWEDQEKIKKAIETGLQEEKGGTRK 100
Query: 61 CRGCEAKIAKGEIRVSKMNYDSDQG 85
E + +K N + +G
Sbjct: 101 EGKAEKSLTDFAAEYAKSNRSTCKG 125
Score = 118 (46.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 34/91 (37%), Positives = 46/91 (50%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLALMV----QSPMFDGKVPHWHHYSCFWKRARI---- 63
Query: 110 SASGKQIPGFGSLEKKDQ-KIVEATLPSLSD 139
S I GF L +DQ KI +A L +
Sbjct: 64 -VSHTDIDGFPELRWEDQEKIKKAIETGLQE 93
Score = 42 (19.8 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 142 SKTDAISHFLLIPLYLTL 159
SK DA+ HFL + TL
Sbjct: 601 SKEDAVEHFLNFNIMRTL 618
>ZFIN|ZDB-GENE-030131-3955 [details] [associations]
symbol:parp1 "poly (ADP-ribose) polymerase family,
member 1" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003950 "NAD+ ADP-ribosyltransferase activity"
evidence=IEA] [GO:0006471 "protein ADP-ribosylation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
Pfam:PF00533 ZFIN:ZDB-GENE-030131-3955 GO:GO:0005634 GO:GO:0051287
GO:GO:0003677 GO:GO:0008270 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006471 GO:GO:0003950 Gene3D:3.30.1740.10
EMBL:BX470188 HOGENOM:HOG000030402 KO:K10798 OMA:SRYWIFR
Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406 SMART:SM00773
SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142 HOVERGEN:HBG053513
GeneTree:ENSGT00390000017341 IPI:IPI00486287 RefSeq:NP_001038407.1
UniGene:Dr.36319 SMR:Q5RHR0 Ensembl:ENSDART00000017269
GeneID:560788 KEGG:dre:560788 InParanoid:Q5RHR0 NextBio:20883616
Uniprot:Q5RHR0
Length = 1013
Score = 202 (76.2 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKSNRSTC+GC+ KI K +IRVSK D ++ ++ G I WYH CF + R +L F
Sbjct: 115 VEYAKSNRSTCKGCDQKIEKDQIRVSKKTVDPEKPQL-GLIDRWYHTGCFVSRREELIFK 173
Query: 111 A--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
S Q+ GF L +D++ ++ LP++ S+G K D +
Sbjct: 174 PEYSAAQLKGFAVLRDEDKEELKKRLPAVKSEGKRKADEV 213
Score = 124 (48.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLDLEFS 110
EYAKS R++C+ C+ IAK +R++ M Q M G +P W+H SCF +R ++
Sbjct: 13 EYAKSGRASCKKCKDNIAKDSLRMAIMV----QSPMFDGKVPHWHHFSCF-WLRAAVQ-- 65
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPS 136
S I GF L DQ+ V+ + S
Sbjct: 66 -SPSDISGFTDLRWDDQEKVKTAIES 90
Score = 122 (48.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/86 (32%), Positives = 39/86 (45%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI-LGNIEYAKSNRS 59
SP FDGK P W H CFW + ++ DI T LR DQE +K+ I G K +
Sbjct: 42 SPMFDGKVPHWHHFSCFWLRAAVQSPSDISGFTDLRWDDQEKVKTAIESGGATGGKGGQK 101
Query: 60 TCRGCEAKIAKGEIRVSKMNYDSDQG 85
E + + +K N + +G
Sbjct: 102 GAAKGEKTLNDFAVEYAKSNRSTCKG 127
>UNIPROTKB|P26446 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003950 "NAD+ ADP-ribosyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0070212
"protein poly-ADP-ribosylation" evidence=IDA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005634 GO:GO:0051287 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212 eggNOG:NOG243963
HOGENOM:HOG000030402 KO:K10798 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 CTD:142 HOVERGEN:HBG053513 Gene3D:2.20.140.10
EMBL:X52690 IPI:IPI00823125 PIR:JH0581 RefSeq:NP_990594.1
UniGene:Gga.5209 PDB:1A26 PDB:1EFY PDB:1PAX PDB:2PAW PDB:2PAX
PDB:3PAX PDB:4PAX PDBsum:1A26 PDBsum:1EFY PDBsum:1PAX PDBsum:2PAW
PDBsum:2PAX PDBsum:3PAX PDBsum:4PAX ProteinModelPortal:P26446
SMR:P26446 STRING:P26446 PRIDE:P26446 GeneID:396199 KEGG:gga:396199
EvolutionaryTrace:P26446 NextBio:20816251 Uniprot:P26446
Length = 1011
Score = 188 (71.2 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF-S 110
EYAKSNRSTC+GCE KI KG+IR+SK ++ ++ G I WYH CF + R +L F
Sbjct: 116 EYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQL-GMIDNWYHPDCFVSRRAELGFLP 174
Query: 111 ASGK-QIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
A G Q+ GF L+ +D++ ++ LP+ ++G K + +
Sbjct: 175 AYGATQLLGFSILKAEDKETLKKQLPATKTEGKRKGEEV 213
Score = 130 (50.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 31/87 (35%), Positives = 40/87 (45%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI-LGNIEYAKSN-R 58
SP FDGK P W H CFWK+ R + DI LR +DQE IK I G ++ K R
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARIVSHTDIDGFPELRWEDQEKIKKAIETGALQEEKGGTR 100
Query: 59 STCRGCEAKIAKGEIRVSKMNYDSDQG 85
E + +K N + +G
Sbjct: 101 KEVGKAEKSLTDFAAEYAKSNRSTCKG 127
Score = 117 (46.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLALMV----QSPMFDGKVPHWHHYSCFWKRARI---- 63
Query: 110 SASGKQIPGFGSLEKKDQ-KIVEA 132
S I GF L +DQ KI +A
Sbjct: 64 -VSHTDIDGFPELRWEDQEKIKKA 86
Score = 39 (18.8 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 142 SKTDAISHFL 151
SK DA+ HFL
Sbjct: 603 SKEDAVEHFL 612
>UNIPROTKB|Q5VX84 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001510 Pfam:PF00645
PROSITE:PS00347 PROSITE:PS50064 GO:GO:0003677 GO:GO:0008270
EMBL:AL359704 Gene3D:3.30.1740.10 EMBL:AL359742 UniGene:Hs.177766
HGNC:HGNC:270 ChiTaRS:PARP1 IPI:IPI00477173 SMR:Q5VX84
STRING:Q5VX84 Ensembl:ENST00000366791 Ensembl:ENST00000366792
Uniprot:Q5VX84
Length = 108
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHP--DVEVDGFSELRWDDQQKVKKT 88
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK D+ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 86
>UNIPROTKB|Q5VX85 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001510 Pfam:PF00645
PROSITE:PS00347 PROSITE:PS50064 GO:GO:0003677 GO:GO:0008270
EMBL:AL359704 Gene3D:3.30.1740.10 EMBL:AL359742 UniGene:Hs.177766
HGNC:HGNC:270 ChiTaRS:PARP1 IPI:IPI00478427 SMR:Q5VX85
STRING:Q5VX85 Ensembl:ENST00000366790 HOGENOM:HOG000208895
Uniprot:Q5VX85
Length = 155
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHP--DVEVDGFSELRWDDQQKVKKT 88
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK D+ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 86
>TAIR|locus:2086355 [details] [associations]
symbol:AT3G14890 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001510
Pfam:PF00645 PROSITE:PS50064 EMBL:CP002686 GO:GO:0005654
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 Gene3D:3.40.50.1000
InterPro:IPR023214 SUPFAM:SSF56784 GO:GO:0008270 GO:GO:0006281
GO:GO:0006351 GO:GO:0016301 GO:GO:0046403 EMBL:AP000370
BRENDA:3.1.3.7 Gene3D:3.30.1740.10 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 KO:K08073 EMBL:BT003865 EMBL:BT005159
EMBL:AF453835 IPI:IPI00527473 IPI:IPI00895619 RefSeq:NP_188107.3
RefSeq:NP_850586.2 UniGene:At.39147 ProteinModelPortal:Q84JE8
SMR:Q84JE8 PaxDb:Q84JE8 PRIDE:Q84JE8 EnsemblPlants:AT3G14890.1
GeneID:820718 KEGG:ath:AT3G14890 TAIR:At3g14890
HOGENOM:HOG000082825 InParanoid:Q84JE8 OMA:DSIKDHD
ProtClustDB:CLSN2680840 BRENDA:3.1.3.32 Genevestigator:Q84JE8
Uniprot:Q84JE8
Length = 694
Score = 136 (52.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 40/108 (37%), Positives = 55/108 (50%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIP--EWYHLSCFNAVRLDLEF 109
EYAKSNRS+CR C KIA +R+ ++ +G+ GG+ W+H CF D E
Sbjct: 53 EYAKSNRSSCRSCSNKIAVKSLRLGLIS----KGR--GGVDMTRWHHFDCFPT---DSES 103
Query: 110 SASGKQIPGFGSLEKKDQ----KIVE--ATLPSLSDGVSKTDAISHFL 151
AS I G +LEK+DQ K+VE +P+ K A H +
Sbjct: 104 IASVDDIQGLSALEKEDQDALTKLVEQCGKVPAKKPDEKKGKAKKHIM 151
Score = 113 (44.8 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
SK++ EYAKS+RSTC+ C IA E+R+ + + M +W+HL CF
Sbjct: 326 SKVIS--EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDM----KQWHHLGCFP--- 376
Query: 105 LDLEFSASGKQIPGFGSLEKKDQ 127
+D + S + I GF L+ DQ
Sbjct: 377 VDSDPIVSVEDIGGFSELQSGDQ 399
Score = 112 (44.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
SK++ + AKS+RS+C C I ++RV + DS +G I W+HL CF
Sbjct: 163 SKVIA--DNAKSSRSSCNRCSQTIVSKDLRVGLVTEDS-RGF---DITRWHHLGCFP--- 213
Query: 105 LDLEFSASGKQIPGFGSLEKKDQ 127
+D S + I G+ SLEK DQ
Sbjct: 214 IDFHPIDSVEDIGGYSSLEKGDQ 236
Score = 51 (23.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 10 KWFHEECFWKKNRPKALLD-IHNVTSLRHQDQEMI 43
+W H +CF + A +D I +++L +DQ+ +
Sbjct: 90 RWHHFDCFPTDSESIASVDDIQGLSALEKEDQDAL 124
>UNIPROTKB|K7ENR9 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001510 Pfam:PF00645
PROSITE:PS00347 PROSITE:PS50064 EMBL:AC004223 EMBL:AC022903
HGNC:HGNC:6600 Gene3D:3.30.1740.10 Ensembl:ENST00000592690
Uniprot:K7ENR9
Length = 207
Score = 108 (43.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 63
Query: 109 FSASGK-----QIPGFGSLEKKD-QKIVE--ATLPSLSDGVSKTDAI 147
+ + K ++ G+ LE + ++I + A L S + G K A+
Sbjct: 64 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAV 110
>TAIR|locus:2042511 [details] [associations]
symbol:PARP1 "POLY(ADP-RIBOSE) POLYMERASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity"
evidence=IEA;ISS;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006471 "protein
ADP-ribosylation" evidence=ISS;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEP] [GO:0006979 "response to oxidative
stress" evidence=IEP] [GO:0009737 "response to abscisic acid
stimulus" evidence=IEP] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0000911 "cytokinesis by
cell plate formation" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007067 "mitosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0007131 "reciprocal
meiotic recombination" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009555 "pollen development"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010212
"response to ionizing radiation" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016570
"histone modification" evidence=RCA] [GO:0031047 "gene silencing by
RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved in
gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation
of cell cycle" evidence=RCA] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982
Pfam:PF00644 Pfam:PF00645 Pfam:PF02877 Pfam:PF08063
PIRSF:PIRSF000489 PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009737 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006979 GO:GO:0051287
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
EMBL:AC006593 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006471 GO:GO:0003950 GO:GO:0009628 Gene3D:3.30.1740.10
EMBL:AJ131705 EMBL:AY091061 EMBL:AY150460 IPI:IPI00537729
PIR:C84719 PIR:T51353 RefSeq:NP_850165.1 UniGene:At.65741 PDB:1V9X
PDBsum:1V9X ProteinModelPortal:Q9ZP54 SMR:Q9ZP54 STRING:Q9ZP54
PaxDb:Q9ZP54 PRIDE:Q9ZP54 EnsemblPlants:AT2G31320.1 GeneID:817690
KEGG:ath:AT2G31320 GeneFarm:4815 TAIR:At2g31320 eggNOG:NOG243963
HOGENOM:HOG000030402 InParanoid:Q9ZP54 KO:K10798 OMA:SRYWIFR
PhylomeDB:Q9ZP54 ProtClustDB:PLN03123 EvolutionaryTrace:Q9ZP54
Genevestigator:Q9ZP54 GermOnline:AT2G31320 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 Uniprot:Q9ZP54
Length = 983
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/104 (31%), Positives = 55/104 (52%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRV-SKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
+K+ IE ++++R+ CR C KI KGE+R+ SK ++G M W+H CF
Sbjct: 110 AKLEYGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM------WHHAKCF--- 160
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGV--SKTD 145
L++ S + + G+ S+ DQ EA LP + + +KT+
Sbjct: 161 -LEMSSSTELESLSGWRSIPDSDQ---EALLPLVKKALPAAKTE 200
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 149
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE+ +++ + + LS + T + L T QV+
Sbjct: 150 RATTKKIEDLTELEGWEELEENEKEQISQHIADLSSKATSTPKKKAVVQAKLTATGQVA 208
>ZFIN|ZDB-GENE-030131-8453 [details] [associations]
symbol:lig3 "ligase III, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 ZFIN:ZDB-GENE-030131-8453
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 CTD:3980 HOGENOM:HOG000007653 HOVERGEN:HBG005515
OrthoDB:EOG44BB1K Gene3D:3.30.1740.10 EMBL:BC098869 IPI:IPI00618829
RefSeq:NP_001025345.2 UniGene:Dr.107348 ProteinModelPortal:Q4KM23
SMR:Q4KM23 STRING:Q4KM23 GeneID:563276 InParanoid:Q4KM23
NextBio:20884821 Uniprot:Q4KM23
Length = 752
Score = 111 (44.1 bits), Expect = 0.00025, P = 0.00025
Identities = 26/99 (26%), Positives = 52/99 (52%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C +L+ +
Sbjct: 8 VEYAKRGTAGCKKCKDKIMKGLVRIGKI-VPNPFSESAGEMKEWYHVKCIFE-KLERARA 65
Query: 111 ASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ K ++ G+ L+ +D+ ++ + L+ V+ T
Sbjct: 66 TTKKIEDITELEGWEELQDEDKDLINKHVSELAAKVNST 104
>UNIPROTKB|I3LN18 [details] [associations]
symbol:LIG3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 Pfam:PF00645 Pfam:PF04675 PROSITE:PS00347
PROSITE:PS50064 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0006310 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:FP312781
Ensembl:ENSSSCT00000026782 OMA:WEELEDP Uniprot:I3LN18
Length = 502
Score = 109 (43.4 bits), Expect = 0.00031, P = 0.00031
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDPEKEQISQHIADLSSKAASTPKKKAVVQAKLTATGQVT 209
>UNIPROTKB|K7ERZ5 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00347
PROSITE:PS00697 PROSITE:PS50064 Gene3D:1.10.3260.10
SUPFAM:SSF117018 EMBL:AC004223 EMBL:AC022903 HGNC:HGNC:6600
Gene3D:3.30.1740.10 Ensembl:ENST00000585941 Uniprot:K7ERZ5
Length = 545
Score = 108 (43.1 bits), Expect = 0.00047, P = 0.00047
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 104 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 159
Query: 109 FSASGK-----QIPGFGSLEKKD-QKIVE--ATLPSLSDGVSKTDAI 147
+ + K ++ G+ LE + ++I + A L S + G K A+
Sbjct: 160 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAV 206
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 108 (43.1 bits), Expect = 0.00094, P = 0.00094
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHVKCMFE-KLERA 63
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVE---ATLPSLSDGVSKTDAI 147
+ + K ++ G+ LE +++ + A L S + G K A+
Sbjct: 64 RATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAV 110
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 108 (43.1 bits), Expect = 0.00095, P = 0.00095
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 151
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ + K ++ G+ LE +++ + + LS + T
Sbjct: 152 RATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT 192
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 108 (43.1 bits), Expect = 0.00096, P = 0.00096
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 151
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ + K ++ G+ LE +++ + + LS + T
Sbjct: 152 RATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT 192
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 108 (43.1 bits), Expect = 0.00097, P = 0.00097
Identities = 31/107 (28%), Positives = 54/107 (50%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 62 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHVKCMFE-KLERA 117
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVE---ATLPSLSDGVSKTDAI 147
+ + K ++ G+ LE +++ + A L S + G K A+
Sbjct: 118 RATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAV 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 162 162 0.00079 107 3 11 22 0.39 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 599 (64 KB)
Total size of DFA: 162 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.83u 0.08s 14.91t Elapsed: 00:00:01
Total cpu time: 14.84u 0.08s 14.92t Elapsed: 00:00:01
Start: Thu Aug 15 14:21:36 2013 End: Thu Aug 15 14:21:37 2013