RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6818
(162 letters)
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 86.2 bits (213), Expect = 4e-23
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF----NAVRLD 106
++YAK + C+ C+ KI KG R+ K+ + + G + EWYH+ C R
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKV-VPNPFSESGGDMKEWYHIKCMFEKLERARAT 66
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ ++ G+ LE +++ + + LS + T
Sbjct: 67 TKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGT 104
Score = 41.1 bits (96), Expect = 6e-06
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 1 SPFFD--GKTPKWFHEECFWKKNR--------PKALLDIHNVTSLRHQDQEMIKSKI 47
+PF + G +W+H +C ++K + L ++ L ++E I I
Sbjct: 38 NPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQHI 94
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3,
Nqo3, N-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 95
Score = 25.6 bits (55), Expect = 1.3
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
S CR C +I + +++G+ SC AV +
Sbjct: 40 SPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADGMV 92
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 26.6 bits (57), Expect = 1.8
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 16 CFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEI 73
K+ ++ + +K+ +L + S+ C A IA EI
Sbjct: 64 SLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId:
3258]}
Length = 93
Score = 25.0 bits (54), Expect = 2.7
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 49 GNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++ + C C KI G + S+ ++ D+ G Y L+C D+
Sbjct: 31 ADLPLS-CQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQG-----YVLTCIAIPESDVV 84
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 97
Score = 24.6 bits (53), Expect = 3.1
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 60 TCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
+C C K+ G + ++ D G + L+C D+
Sbjct: 43 SCSSCAGKLKTGSLNQDDQSFLDDDQIDEG-----WVLTCAAYPVSDVT 86
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 422
Score = 25.3 bits (55), Expect = 4.5
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 85 GKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLS 138
+ W + + + + G I GF EK + ++ +P L+
Sbjct: 324 ITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLT 377
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 23.9 bits (51), Expect = 5.1
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 81 DSDQGKMIG--GIPEWYHLSCFN 101
+ MI EW+H C
Sbjct: 24 PHNNRFMICCDRCEEWFHGDCVG 46
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 23.1 bits (49), Expect = 7.5
Identities = 4/23 (17%), Positives = 6/23 (26%), Gaps = 2/23 (8%)
Query: 81 DSDQGKMIG--GIPEWYHLSCFN 101
+ I W+H C
Sbjct: 16 YAADEFWICCDLCEMWFHGKCVK 38
>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId:
3073]}
Length = 94
Score = 23.4 bits (50), Expect = 7.6
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 56 SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
C C K+ GE+ S ++ D G + L+C D+
Sbjct: 37 CRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKG-----FVLTCVAYPTSDVT 84
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 23.1 bits (49), Expect = 8.5
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 81 DSDQGKMIG--GIPEWYHLSCFN 101
D D +M+ G W+H C
Sbjct: 25 DDDGERMLACDGCGVWHHTRCIG 47
>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId:
3258]}
Length = 95
Score = 23.4 bits (50), Expect = 9.4
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 60 TCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
C C K+ G + S+ ++ D G + L+C DL
Sbjct: 42 ACSSCLGKVVSGSVDESEGSFLDDGQMEEG-----FVLTCIAIPESDLV 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,648
Number of extensions: 25088
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 22
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.3 bits)