Query psy6819
Match_columns 135
No_of_seqs 138 out of 1857
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 19:11:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910|consensus 100.0 4.7E-29 1E-33 153.7 11.3 107 23-129 42-149 (150)
2 PHA02278 thioredoxin-like prot 99.9 1.8E-25 3.8E-30 132.8 12.8 93 30-123 3-100 (103)
3 PF00085 Thioredoxin: Thioredo 99.9 3.6E-25 7.7E-30 131.6 14.2 100 27-126 2-102 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 2E-25 4.3E-30 133.7 10.7 86 31-116 2-89 (114)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.9E-25 6.3E-30 132.6 11.4 98 27-124 4-104 (104)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.9E-25 1.1E-29 131.0 11.1 97 26-123 3-100 (101)
7 cd02985 TRX_CDSP32 TRX family, 99.9 1.7E-24 3.7E-29 129.0 13.2 96 30-126 2-101 (103)
8 cd03065 PDI_b_Calsequestrin_N 99.9 1.2E-24 2.6E-29 132.1 12.3 103 25-128 10-119 (120)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 9.1E-25 2E-29 131.7 11.7 100 24-123 9-112 (113)
10 PRK09381 trxA thioredoxin; Pro 99.9 3.6E-24 7.7E-29 128.9 13.8 102 27-128 6-108 (109)
11 cd02963 TRX_DnaJ TRX domain, D 99.9 1.4E-24 3E-29 131.1 11.9 98 30-127 10-111 (111)
12 KOG0907|consensus 99.9 2.9E-24 6.4E-29 127.7 12.1 94 32-126 11-104 (106)
13 cd02956 ybbN ybbN protein fami 99.9 2.2E-24 4.8E-29 127.0 11.5 93 33-125 2-96 (96)
14 cd02948 TRX_NDPK TRX domain, T 99.9 6.8E-24 1.5E-28 126.3 13.2 98 27-127 3-102 (102)
15 COG3118 Thioredoxin domain-con 99.9 1.8E-24 4E-29 146.3 10.5 107 24-130 23-132 (304)
16 cd02999 PDI_a_ERp44_like PDIa 99.9 6.7E-24 1.5E-28 125.8 10.6 91 33-124 8-100 (100)
17 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.3E-23 5E-28 125.2 11.7 98 26-124 3-108 (108)
18 PLN00410 U5 snRNP protein, DIM 99.9 2.9E-23 6.2E-28 128.8 11.7 104 27-130 7-122 (142)
19 PRK10996 thioredoxin 2; Provis 99.9 9E-23 2E-27 127.6 14.1 99 29-128 40-139 (139)
20 cd02965 HyaE HyaE family; HyaE 99.9 3.6E-23 7.7E-28 123.3 11.2 97 24-121 10-109 (111)
21 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1E-22 2.2E-27 123.2 13.4 90 25-115 6-95 (113)
22 cd03002 PDI_a_MPD1_like PDI fa 99.9 3.1E-23 6.8E-28 124.7 11.1 99 27-125 3-109 (109)
23 PTZ00443 Thioredoxin domain-co 99.9 5.5E-23 1.2E-27 137.0 13.2 108 24-131 30-142 (224)
24 TIGR01068 thioredoxin thioredo 99.9 9.2E-23 2E-27 120.7 12.8 99 30-128 2-101 (101)
25 cd02994 PDI_a_TMX PDIa family, 99.9 7.9E-23 1.7E-27 121.4 12.5 96 27-126 4-101 (101)
26 cd03001 PDI_a_P5 PDIa family, 99.9 2.4E-22 5.1E-27 119.6 12.3 98 27-124 3-102 (103)
27 cd02950 TxlA TRX-like protein 99.9 2.5E-22 5.4E-27 126.0 12.7 100 33-133 12-115 (142)
28 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.9E-22 4.1E-27 119.8 11.6 95 28-124 4-102 (102)
29 cd02984 TRX_PICOT TRX domain, 99.9 2.5E-22 5.4E-27 118.4 12.0 93 31-124 2-96 (97)
30 cd02957 Phd_like Phosducin (Ph 99.9 1.5E-22 3.2E-27 122.6 11.2 87 28-115 8-96 (113)
31 cd02949 TRX_NTR TRX domain, no 99.9 5.6E-22 1.2E-26 117.0 12.2 93 33-125 4-97 (97)
32 TIGR01126 pdi_dom protein disu 99.9 7.5E-22 1.6E-26 117.1 11.4 97 30-127 2-101 (102)
33 cd02962 TMX2 TMX2 family; comp 99.9 2.7E-21 5.8E-26 122.0 14.0 91 24-114 28-127 (152)
34 PTZ00051 thioredoxin; Provisio 99.9 1.7E-21 3.6E-26 115.1 12.2 94 26-121 3-96 (98)
35 cd02997 PDI_a_PDIR PDIa family 99.9 1.3E-21 2.8E-26 116.5 11.8 96 28-124 4-104 (104)
36 cd02986 DLP Dim1 family, Dim1- 99.9 2.2E-21 4.7E-26 115.6 12.6 98 31-128 2-111 (114)
37 cd02987 Phd_like_Phd Phosducin 99.9 1.9E-21 4E-26 125.8 13.1 100 25-125 64-172 (175)
38 cd02998 PDI_a_ERp38 PDIa famil 99.9 2E-21 4.3E-26 115.8 10.2 98 27-124 3-105 (105)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 4E-21 8.7E-26 114.4 10.4 97 27-124 3-104 (104)
40 cd02988 Phd_like_VIAF Phosduci 99.9 2.8E-20 6.2E-25 121.7 14.8 100 23-125 81-189 (192)
41 cd02975 PfPDO_like_N Pyrococcu 99.9 6.2E-21 1.3E-25 115.4 10.7 95 34-129 15-111 (113)
42 cd02993 PDI_a_APS_reductase PD 99.9 8.7E-21 1.9E-25 114.1 11.2 99 26-124 3-109 (109)
43 KOG0908|consensus 99.9 6.6E-21 1.4E-25 125.8 10.8 107 24-131 2-109 (288)
44 TIGR01295 PedC_BrcD bacterioci 99.9 2.7E-20 5.9E-25 113.9 12.9 100 24-125 6-121 (122)
45 cd03000 PDI_a_TMX3 PDIa family 99.9 1.5E-20 3.3E-25 112.2 11.3 93 32-127 7-103 (104)
46 cd02953 DsbDgamma DsbD gamma f 99.9 3.9E-21 8.4E-26 114.7 8.7 93 32-125 2-104 (104)
47 cd02961 PDI_a_family Protein D 99.8 3E-20 6.6E-25 109.5 9.9 94 30-124 4-101 (101)
48 cd02951 SoxW SoxW family; SoxW 99.8 5E-20 1.1E-24 113.3 11.0 98 32-130 4-121 (125)
49 cd02947 TRX_family TRX family; 99.8 9.7E-20 2.1E-24 105.6 11.7 91 33-124 2-92 (93)
50 PTZ00062 glutaredoxin; Provisi 99.8 1.3E-19 2.9E-24 119.1 12.2 93 29-130 4-96 (204)
51 KOG0190|consensus 99.8 7.2E-20 1.6E-24 132.4 9.8 109 22-131 23-135 (493)
52 PTZ00102 disulphide isomerase; 99.8 1.1E-18 2.3E-23 128.5 16.1 105 25-131 33-141 (477)
53 TIGR01130 ER_PDI_fam protein d 99.8 6.6E-19 1.4E-23 128.9 13.4 105 26-131 3-112 (462)
54 cd02992 PDI_a_QSOX PDIa family 99.8 9.2E-19 2E-23 106.1 11.3 81 27-107 4-90 (114)
55 PTZ00102 disulphide isomerase; 99.8 1.1E-18 2.4E-23 128.4 12.4 105 26-130 359-467 (477)
56 PLN02309 5'-adenylylsulfate re 99.8 4.7E-18 1E-22 123.3 12.7 104 24-127 345-456 (457)
57 TIGR00424 APS_reduc 5'-adenyly 99.8 4.9E-18 1.1E-22 123.3 12.6 104 24-127 351-462 (463)
58 TIGR00411 redox_disulf_1 small 99.8 7.7E-18 1.7E-22 96.2 10.5 80 45-128 2-82 (82)
59 cd03007 PDI_a_ERp29_N PDIa fam 99.8 6.9E-18 1.5E-22 101.5 10.1 98 26-127 3-115 (116)
60 cd02959 ERp19 Endoplasmic reti 99.8 1.5E-18 3.3E-23 105.4 6.2 100 30-129 7-114 (117)
61 cd02952 TRP14_like Human TRX-r 99.8 1.7E-17 3.6E-22 100.6 10.2 95 27-124 5-118 (119)
62 PRK11509 hydrogenase-1 operon 99.8 7.8E-17 1.7E-21 98.7 13.2 126 1-134 1-130 (132)
63 cd02982 PDI_b'_family Protein 99.7 1.3E-17 2.9E-22 99.1 8.4 87 42-128 12-103 (103)
64 PF13098 Thioredoxin_2: Thiore 99.7 1.9E-17 4.1E-22 99.9 8.4 85 40-124 3-112 (112)
65 KOG4277|consensus 99.7 3.3E-17 7.1E-22 111.5 9.1 96 32-128 31-132 (468)
66 TIGR02187 GlrX_arch Glutaredox 99.7 1.2E-16 2.7E-21 106.7 10.9 86 43-128 20-111 (215)
67 KOG0190|consensus 99.7 3E-17 6.5E-22 119.0 8.2 102 26-129 368-474 (493)
68 TIGR02187 GlrX_arch Glutaredox 99.7 2E-16 4.4E-21 105.6 11.3 86 38-126 128-214 (215)
69 cd02955 SSP411 TRX domain, SSP 99.7 1.9E-16 4.1E-21 96.9 9.9 92 36-127 9-118 (124)
70 PRK00293 dipZ thiol:disulfide 99.7 2.1E-16 4.6E-21 118.3 12.0 104 25-128 454-570 (571)
71 TIGR01130 ER_PDI_fam protein d 99.7 2E-16 4.3E-21 115.8 11.2 104 26-131 348-457 (462)
72 PRK15412 thiol:disulfide inter 99.7 5.4E-16 1.2E-20 101.4 11.2 87 41-129 67-177 (185)
73 PRK14018 trifunctional thiored 99.7 3E-16 6.6E-21 115.4 10.9 87 40-126 54-171 (521)
74 PHA02125 thioredoxin-like prot 99.7 1.1E-15 2.3E-20 86.0 9.9 70 46-123 2-72 (75)
75 TIGR00385 dsbE periplasmic pro 99.7 1.3E-15 2.8E-20 98.6 11.2 87 41-129 62-172 (173)
76 TIGR02738 TrbB type-F conjugat 99.7 1.3E-15 2.8E-20 96.4 10.8 86 42-128 50-153 (153)
77 TIGR02740 TraF-like TraF-like 99.7 2E-15 4.4E-20 103.7 11.7 89 42-131 166-267 (271)
78 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.8E-15 3.8E-20 93.2 9.7 78 42-120 25-126 (127)
79 TIGR00412 redox_disulf_2 small 99.7 2.2E-15 4.7E-20 84.9 8.9 72 46-124 2-75 (76)
80 cd02973 TRX_GRX_like Thioredox 99.6 2.7E-15 5.9E-20 82.5 8.0 62 45-108 2-63 (67)
81 KOG0191|consensus 99.6 1.9E-15 4.2E-20 108.7 9.5 102 30-131 35-137 (383)
82 KOG0912|consensus 99.6 1.4E-15 3E-20 103.5 7.7 97 32-129 4-107 (375)
83 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 7.3E-15 1.6E-19 85.1 9.3 76 42-121 12-87 (89)
84 cd02958 UAS UAS family; UAS is 99.6 1.1E-14 2.5E-19 88.1 10.4 100 30-129 5-112 (114)
85 PRK03147 thiol-disulfide oxido 99.6 2E-14 4.3E-19 92.9 11.5 87 41-127 60-171 (173)
86 cd03008 TryX_like_RdCVF Trypar 99.6 3.5E-14 7.5E-19 89.1 8.9 69 42-110 25-128 (146)
87 cd03009 TryX_like_TryX_NRX Try 99.6 3.2E-14 7E-19 88.0 8.7 69 42-110 18-115 (131)
88 KOG0191|consensus 99.6 7.3E-14 1.6E-18 100.6 11.5 106 26-131 146-255 (383)
89 PRK13728 conjugal transfer pro 99.6 1.1E-13 2.3E-18 89.4 10.7 84 46-130 73-173 (181)
90 cd02964 TryX_like_family Trypa 99.6 4E-14 8.7E-19 87.8 8.5 69 42-110 17-115 (132)
91 PF13905 Thioredoxin_8: Thiore 99.5 6.8E-14 1.5E-18 81.9 8.3 66 42-107 1-95 (95)
92 PLN02919 haloacid dehalogenase 99.5 9E-14 1.9E-18 110.4 11.1 89 41-129 419-537 (1057)
93 cd02966 TlpA_like_family TlpA- 99.5 1.1E-13 2.3E-18 83.0 8.9 72 42-113 19-116 (116)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 1.7E-13 3.6E-18 83.8 9.7 79 42-123 20-121 (123)
95 smart00594 UAS UAS domain. 99.5 5.8E-13 1.3E-17 81.5 10.9 101 24-124 9-121 (122)
96 cd02960 AGR Anterior Gradient 99.5 1.2E-13 2.6E-18 84.7 7.3 86 30-116 11-101 (130)
97 KOG1731|consensus 99.5 1.7E-14 3.7E-19 105.2 3.5 105 24-128 39-153 (606)
98 cd03012 TlpA_like_DipZ_like Tl 99.5 4.6E-13 9.9E-18 82.4 9.2 74 41-114 22-125 (126)
99 cd02967 mauD Methylamine utili 99.5 4.5E-13 9.8E-18 80.9 8.7 69 42-110 21-111 (114)
100 PF08534 Redoxin: Redoxin; In 99.5 8.1E-13 1.8E-17 83.1 10.1 76 41-116 27-136 (146)
101 KOG1672|consensus 99.5 8.9E-13 1.9E-17 84.5 10.0 97 18-115 60-157 (211)
102 PF02114 Phosducin: Phosducin; 99.4 2.2E-12 4.7E-17 88.3 11.2 103 24-127 126-237 (265)
103 PTZ00056 glutathione peroxidas 99.4 1.4E-12 3E-17 86.2 8.3 91 42-132 39-182 (199)
104 TIGR02661 MauD methylamine deh 99.4 3.9E-12 8.5E-17 83.4 10.2 86 41-128 73-179 (189)
105 PLN02399 phospholipid hydroper 99.4 4.5E-12 9.7E-17 85.4 10.4 88 42-129 99-235 (236)
106 TIGR01626 ytfJ_HI0045 conserve 99.4 4.8E-12 1E-16 82.1 9.9 81 42-124 59-176 (184)
107 COG4232 Thiol:disulfide interc 99.4 2.1E-12 4.6E-17 95.1 8.8 101 27-127 458-567 (569)
108 cd02969 PRX_like1 Peroxiredoxi 99.4 1.6E-11 3.5E-16 79.3 11.2 93 41-133 24-157 (171)
109 PLN02412 probable glutathione 99.4 9.7E-12 2.1E-16 80.1 9.7 89 42-130 29-166 (167)
110 COG2143 Thioredoxin-related pr 99.3 6E-11 1.3E-15 73.8 11.8 91 37-127 37-148 (182)
111 PF13899 Thioredoxin_7: Thiore 99.3 6.7E-12 1.5E-16 71.6 5.9 73 30-103 5-81 (82)
112 PF14595 Thioredoxin_9: Thiore 99.3 2.7E-11 5.8E-16 74.7 8.1 83 41-125 40-126 (129)
113 TIGR02540 gpx7 putative glutat 99.3 5.7E-11 1.2E-15 75.4 9.5 87 42-128 22-153 (153)
114 cd00340 GSH_Peroxidase Glutath 99.3 3.5E-11 7.6E-16 76.3 7.6 81 42-123 22-151 (152)
115 PF13728 TraF: F plasmid trans 99.3 1.2E-10 2.6E-15 77.7 10.3 82 42-124 120-214 (215)
116 KOG0914|consensus 99.2 1.3E-11 2.9E-16 80.6 5.0 83 30-112 131-222 (265)
117 cd03017 PRX_BCP Peroxiredoxin 99.2 1.6E-10 3.4E-15 72.1 9.0 83 42-124 23-139 (140)
118 TIGR02196 GlrX_YruB Glutaredox 99.2 1.7E-10 3.6E-15 64.0 8.2 68 46-124 2-73 (74)
119 PF13192 Thioredoxin_3: Thiore 99.2 3E-10 6.6E-15 63.8 8.7 72 48-125 4-76 (76)
120 COG0526 TrxA Thiol-disulfide i 99.2 1.5E-10 3.4E-15 69.0 8.1 85 42-126 32-122 (127)
121 KOG0913|consensus 99.2 2E-11 4.3E-16 80.6 2.7 99 24-126 24-124 (248)
122 TIGR02200 GlrX_actino Glutared 99.1 6.1E-10 1.3E-14 62.4 8.3 70 46-125 2-76 (77)
123 cd02991 UAS_ETEA UAS family, E 99.1 1.7E-09 3.8E-14 65.5 10.7 98 31-130 6-115 (116)
124 PTZ00256 glutathione peroxidas 99.1 9E-10 2E-14 71.9 9.7 88 42-129 40-182 (183)
125 PF03190 Thioredox_DsbH: Prote 99.1 6.1E-10 1.3E-14 70.7 7.4 79 32-110 27-118 (163)
126 PF00578 AhpC-TSA: AhpC/TSA fa 99.1 1.7E-09 3.6E-14 66.0 9.0 69 41-109 24-123 (124)
127 TIGR02739 TraF type-F conjugat 99.1 3E-09 6.4E-14 72.5 10.7 88 42-130 150-250 (256)
128 cd01659 TRX_superfamily Thiore 99.1 1.2E-09 2.6E-14 58.2 7.2 60 46-105 1-63 (69)
129 TIGR02180 GRX_euk Glutaredoxin 99.1 2.4E-09 5.2E-14 61.0 8.6 60 46-108 1-65 (84)
130 KOG2501|consensus 99.1 5.3E-10 1.2E-14 70.1 6.1 68 42-109 33-130 (157)
131 cd03015 PRX_Typ2cys Peroxiredo 99.1 3.5E-09 7.6E-14 68.5 10.0 86 42-127 29-156 (173)
132 PRK13703 conjugal pilus assemb 99.0 5E-09 1.1E-13 71.0 10.5 89 42-131 143-244 (248)
133 KOG3414|consensus 99.0 1.1E-08 2.3E-13 61.5 10.4 103 27-129 7-121 (142)
134 TIGR03137 AhpC peroxiredoxin. 99.0 6.1E-09 1.3E-13 68.3 10.3 85 42-126 31-154 (187)
135 cd03014 PRX_Atyp2cys Peroxired 99.0 3.9E-09 8.4E-14 66.1 9.0 83 42-124 26-141 (143)
136 PRK00522 tpx lipid hydroperoxi 99.0 4.5E-09 9.7E-14 67.7 9.2 72 42-113 44-149 (167)
137 PRK09437 bcp thioredoxin-depen 99.0 7.9E-09 1.7E-13 65.6 10.0 83 42-124 30-149 (154)
138 PF11009 DUF2847: Protein of u 99.0 1.8E-08 4E-13 59.4 10.3 95 26-120 2-104 (105)
139 PRK11200 grxA glutaredoxin 1; 99.0 1.4E-08 3E-13 58.2 9.7 76 45-128 2-83 (85)
140 PF06110 DUF953: Eukaryotic pr 99.0 7.6E-09 1.6E-13 62.6 8.4 77 29-105 3-99 (119)
141 cd02970 PRX_like2 Peroxiredoxi 99.0 9.7E-09 2.1E-13 64.5 9.3 41 43-83 24-67 (149)
142 PRK10877 protein disulfide iso 99.0 5.1E-09 1.1E-13 70.8 8.3 81 41-127 106-230 (232)
143 TIGR03143 AhpF_homolog putativ 99.0 1.1E-08 2.4E-13 77.1 11.0 88 33-124 466-554 (555)
144 cd03018 PRX_AhpE_like Peroxire 98.9 1.9E-08 4.2E-13 63.3 9.9 82 43-124 29-147 (149)
145 PRK13190 putative peroxiredoxi 98.9 3.6E-08 7.9E-13 65.4 9.7 88 42-129 27-155 (202)
146 PRK10382 alkyl hydroperoxide r 98.9 6.7E-08 1.4E-12 63.3 10.7 86 42-127 31-155 (187)
147 cd02971 PRX_family Peroxiredox 98.9 3E-08 6.5E-13 61.7 8.7 76 41-116 21-131 (140)
148 TIGR02183 GRXA Glutaredoxin, G 98.9 6.2E-08 1.3E-12 55.7 9.3 75 46-128 2-82 (86)
149 PRK15317 alkyl hydroperoxide r 98.9 4.4E-08 9.5E-13 73.4 10.8 91 33-127 106-197 (517)
150 PF07449 HyaE: Hydrogenase-1 e 98.8 9.8E-08 2.1E-12 56.6 9.3 95 24-119 9-106 (107)
151 PF13848 Thioredoxin_6: Thiore 98.8 3.3E-07 7.2E-12 59.4 12.6 106 21-126 74-184 (184)
152 PRK15000 peroxidase; Provision 98.8 1.2E-07 2.7E-12 62.7 10.6 87 41-127 33-161 (200)
153 KOG0911|consensus 98.8 3.8E-09 8.3E-14 69.6 3.2 89 27-118 5-93 (227)
154 cd02976 NrdH NrdH-redoxin (Nrd 98.8 7.4E-08 1.6E-12 53.0 8.1 67 46-123 2-72 (73)
155 PF00462 Glutaredoxin: Glutare 98.8 9.2E-08 2E-12 51.1 7.4 55 46-107 1-59 (60)
156 cd03020 DsbA_DsbC_DsbG DsbA fa 98.8 5.1E-08 1.1E-12 64.4 7.6 76 42-124 77-197 (197)
157 TIGR03140 AhpF alkyl hydropero 98.7 2E-07 4.4E-12 69.8 11.1 88 36-127 110-198 (515)
158 PRK11657 dsbG disulfide isomer 98.7 1.3E-07 2.9E-12 64.6 9.2 82 42-125 117-249 (251)
159 PF02966 DIM1: Mitosis protein 98.7 8.1E-07 1.8E-11 54.1 11.3 100 27-127 4-116 (133)
160 cd03023 DsbA_Com1_like DsbA fa 98.7 1.3E-07 2.8E-12 59.5 8.4 39 42-80 5-43 (154)
161 cd03419 GRX_GRXh_1_2_like Glut 98.7 2.8E-07 6.1E-12 52.1 8.9 58 46-108 2-64 (82)
162 TIGR02190 GlrX-dom Glutaredoxi 98.7 2.7E-07 5.9E-12 52.1 8.7 59 43-108 7-68 (79)
163 cd02968 SCO SCO (an acronym fo 98.7 7.1E-08 1.5E-12 60.2 6.9 42 41-82 21-68 (142)
164 PRK10606 btuE putative glutath 98.7 1.1E-07 2.3E-12 62.1 7.8 40 42-82 25-66 (183)
165 cd03016 PRX_1cys Peroxiredoxin 98.7 4.7E-07 1E-11 60.1 10.0 84 44-127 28-153 (203)
166 KOG3425|consensus 98.7 2.4E-07 5.1E-12 55.4 7.5 76 29-104 10-104 (128)
167 PF01216 Calsequestrin: Calseq 98.7 6.8E-07 1.5E-11 62.7 10.6 102 26-130 36-146 (383)
168 PTZ00137 2-Cys peroxiredoxin; 98.6 8.8E-07 1.9E-11 60.8 10.9 86 42-127 98-224 (261)
169 PRK13189 peroxiredoxin; Provis 98.6 7.9E-07 1.7E-11 59.8 10.4 86 42-127 35-162 (222)
170 TIGR02194 GlrX_NrdH Glutaredox 98.6 6.1E-07 1.3E-11 49.7 7.4 66 47-122 2-70 (72)
171 cd03029 GRX_hybridPRX5 Glutare 98.6 1.3E-06 2.8E-11 48.3 8.7 66 46-124 3-71 (72)
172 PHA03050 glutaredoxin; Provisi 98.6 1.1E-06 2.5E-11 52.5 9.0 70 34-109 5-81 (108)
173 PF05768 DUF836: Glutaredoxin- 98.6 2.4E-06 5.3E-11 48.4 9.9 76 46-125 2-81 (81)
174 PRK13599 putative peroxiredoxi 98.6 1.5E-06 3.3E-11 58.2 10.2 86 42-127 28-155 (215)
175 TIGR03143 AhpF_homolog putativ 98.5 1.5E-06 3.3E-11 65.8 10.9 99 33-131 356-457 (555)
176 PRK13191 putative peroxiredoxi 98.5 2.1E-06 4.6E-11 57.5 10.4 86 42-127 33-160 (215)
177 TIGR02181 GRX_bact Glutaredoxi 98.5 1.2E-06 2.7E-11 49.3 7.6 56 46-108 1-60 (79)
178 cd03027 GRX_DEP Glutaredoxin ( 98.5 1.9E-06 4.1E-11 47.8 8.1 57 46-109 3-63 (73)
179 PRK10329 glutaredoxin-like pro 98.5 4.3E-06 9.3E-11 47.4 9.4 71 46-127 3-76 (81)
180 cd03418 GRX_GRXb_1_3_like Glut 98.5 3.2E-06 7E-11 47.0 8.7 56 46-108 2-62 (75)
181 TIGR02189 GlrX-like_plant Glut 98.5 9.2E-07 2E-11 52.1 6.7 57 46-109 10-73 (99)
182 KOG3171|consensus 98.5 7.1E-07 1.5E-11 58.7 6.6 106 20-126 135-249 (273)
183 cd02066 GRX_family Glutaredoxi 98.5 2.2E-06 4.8E-11 46.8 7.5 57 46-109 2-62 (72)
184 TIGR00365 monothiol glutaredox 98.5 7.6E-06 1.6E-10 48.0 10.1 51 52-109 25-79 (97)
185 cd02983 P5_C P5 family, C-term 98.4 1.2E-05 2.7E-10 49.7 11.2 107 25-132 4-119 (130)
186 PTZ00253 tryparedoxin peroxida 98.4 5.9E-06 1.3E-10 54.7 10.1 86 42-127 36-163 (199)
187 PF13462 Thioredoxin_4: Thiore 98.4 3.7E-06 8.1E-11 53.4 8.6 80 42-126 12-162 (162)
188 PRK10954 periplasmic protein d 98.4 2.8E-06 6.1E-11 56.6 7.7 39 42-80 37-79 (207)
189 COG0695 GrxC Glutaredoxin and 98.3 8E-06 1.7E-10 46.2 8.1 67 46-122 3-75 (80)
190 cd03019 DsbA_DsbA DsbA family, 98.3 2.8E-06 6.1E-11 54.8 6.5 39 41-79 14-53 (178)
191 KOG2603|consensus 98.3 1.4E-05 3E-10 55.5 10.0 105 23-128 39-166 (331)
192 KOG3170|consensus 98.3 1.3E-05 2.9E-10 52.3 8.6 100 24-126 91-199 (240)
193 cd03028 GRX_PICOT_like Glutare 98.2 2.7E-05 5.8E-10 45.0 8.9 50 52-108 21-74 (90)
194 PRK10824 glutaredoxin-4; Provi 98.2 1.4E-05 3E-10 48.3 7.8 51 52-109 28-82 (115)
195 PRK10638 glutaredoxin 3; Provi 98.1 2.6E-05 5.6E-10 44.3 7.4 57 46-109 4-64 (83)
196 cd02981 PDI_b_family Protein D 98.1 8.2E-05 1.8E-09 43.3 9.7 92 27-126 3-96 (97)
197 cd02972 DsbA_family DsbA famil 98.0 3.9E-05 8.5E-10 44.1 6.3 56 46-101 1-89 (98)
198 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 9.9E-05 2.2E-09 44.4 8.0 72 55-127 31-110 (111)
199 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00017 3.7E-09 43.4 8.5 91 38-130 12-110 (111)
200 KOG1752|consensus 97.9 0.00029 6.3E-09 41.8 8.9 59 46-109 16-79 (104)
201 PTZ00062 glutaredoxin; Provisi 97.8 0.00025 5.4E-09 47.2 8.5 51 52-109 126-180 (204)
202 PRK12759 bifunctional gluaredo 97.7 0.00018 3.8E-09 52.8 7.5 56 46-108 4-71 (410)
203 cd02974 AhpF_NTD_N Alkyl hydro 97.6 0.0025 5.5E-08 37.1 9.9 84 33-128 9-94 (94)
204 COG1331 Highly conserved prote 97.6 0.00031 6.6E-09 53.7 7.3 79 30-109 32-123 (667)
205 COG1225 Bcp Peroxiredoxin [Pos 97.6 0.0016 3.4E-08 41.5 9.1 107 21-127 8-155 (157)
206 COG1651 DsbG Protein-disulfide 97.5 0.00084 1.8E-08 45.7 8.1 37 87-128 207-243 (244)
207 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.0022 4.7E-08 37.6 7.9 98 27-126 5-110 (112)
208 cd03031 GRX_GRX_like Glutaredo 97.4 0.0035 7.6E-08 39.6 9.0 57 46-109 2-72 (147)
209 PRK15317 alkyl hydroperoxide r 97.3 0.0035 7.5E-08 47.4 10.0 87 32-129 8-95 (517)
210 cd03066 PDI_b_Calsequestrin_mi 97.3 0.011 2.4E-07 34.8 9.7 94 26-126 3-99 (102)
211 TIGR03140 AhpF alkyl hydropero 97.3 0.0051 1.1E-07 46.5 10.0 89 33-131 9-98 (515)
212 PF07912 ERp29_N: ERp29, N-ter 97.1 0.021 4.5E-07 34.8 12.1 97 28-127 8-118 (126)
213 cd02990 UAS_FAF1 UAS family, F 97.1 0.025 5.4E-07 35.3 11.2 91 39-129 18-134 (136)
214 PF13848 Thioredoxin_6: Thiore 97.1 0.0085 1.8E-07 38.7 8.9 65 60-128 8-75 (184)
215 PF01323 DSBA: DSBA-like thior 97.1 0.0063 1.4E-07 39.6 7.9 35 87-125 159-193 (193)
216 PF13743 Thioredoxin_5: Thiore 97.0 0.0042 9.1E-08 40.4 6.5 32 48-79 2-34 (176)
217 cd02978 KaiB_like KaiB-like fa 96.8 0.0061 1.3E-07 33.6 5.3 56 46-101 4-61 (72)
218 TIGR02654 circ_KaiB circadian 96.7 0.011 2.4E-07 33.8 5.6 72 44-116 4-77 (87)
219 cd03069 PDI_b_ERp57 PDIb famil 96.7 0.054 1.2E-06 32.0 9.1 91 27-126 4-102 (104)
220 COG0278 Glutaredoxin-related p 96.6 0.014 3E-07 34.1 6.0 54 52-109 28-83 (105)
221 TIGR02742 TrbC_Ftype type-F co 96.6 0.011 2.4E-07 36.5 5.9 64 58-126 39-113 (130)
222 PRK09301 circadian clock prote 96.6 0.014 2.9E-07 34.4 5.8 73 43-116 6-80 (103)
223 COG3634 AhpF Alkyl hydroperoxi 96.6 0.018 3.9E-07 41.6 7.3 92 31-126 104-196 (520)
224 PF00837 T4_deiodinase: Iodoth 96.5 0.03 6.5E-07 38.0 7.7 43 39-81 99-142 (237)
225 COG3019 Predicted metal-bindin 96.4 0.081 1.8E-06 32.9 8.5 73 44-126 26-102 (149)
226 cd03013 PRX5_like Peroxiredoxi 96.3 0.012 2.5E-07 37.5 5.0 41 42-82 29-74 (155)
227 KOG2640|consensus 96.3 0.0015 3.4E-08 45.6 1.0 87 42-129 76-163 (319)
228 KOG2507|consensus 96.2 0.072 1.6E-06 39.1 8.8 87 42-128 18-111 (506)
229 COG2761 FrnE Predicted dithiol 96.0 0.024 5.1E-07 38.3 5.3 44 86-133 175-218 (225)
230 PF09673 TrbC_Ftype: Type-F co 95.8 0.047 1E-06 32.9 5.8 72 45-120 25-108 (113)
231 cd03074 PDI_b'_Calsequestrin_C 95.8 0.19 4.2E-06 29.9 10.6 99 30-128 7-120 (120)
232 cd02977 ArsC_family Arsenate R 95.8 0.013 2.9E-07 34.6 3.1 75 47-126 2-85 (105)
233 cd03060 GST_N_Omega_like GST_N 95.4 0.19 4.2E-06 27.2 7.4 58 47-108 2-60 (71)
234 COG4545 Glutaredoxin-related p 95.3 0.07 1.5E-06 29.5 4.5 57 47-109 5-77 (85)
235 PF06053 DUF929: Domain of unk 95.2 0.071 1.5E-06 36.6 5.5 58 38-102 54-112 (249)
236 cd03068 PDI_b_ERp72 PDIb famil 95.2 0.33 7.1E-06 28.9 11.0 95 25-126 2-106 (107)
237 PRK01655 spxA transcriptional 95.0 0.06 1.3E-06 33.3 4.3 35 46-85 2-36 (131)
238 PF07689 KaiB: KaiB domain; I 95.0 0.015 3.3E-07 32.9 1.5 52 49-100 3-56 (82)
239 TIGR01617 arsC_related transcr 94.9 0.06 1.3E-06 32.5 4.1 35 47-86 2-36 (117)
240 cd03036 ArsC_like Arsenate Red 94.8 0.05 1.1E-06 32.6 3.5 34 47-85 2-35 (111)
241 cd03041 GST_N_2GST_N GST_N fam 94.8 0.34 7.4E-06 26.7 8.7 69 47-126 3-75 (77)
242 COG1999 Uncharacterized protei 94.5 0.92 2E-05 30.4 9.7 90 41-130 66-206 (207)
243 cd03035 ArsC_Yffb Arsenate Red 94.5 0.061 1.3E-06 31.9 3.3 34 47-85 2-35 (105)
244 PHA03075 glutaredoxin-like pro 94.4 0.11 2.4E-06 31.2 4.2 35 43-80 2-36 (123)
245 COG3531 Predicted protein-disu 94.3 0.11 2.5E-06 34.2 4.5 45 85-129 164-210 (212)
246 cd03037 GST_N_GRX2 GST_N famil 94.3 0.42 9.2E-06 25.7 7.2 56 48-107 3-58 (71)
247 cd03040 GST_N_mPGES2 GST_N fam 94.0 0.52 1.1E-05 25.8 7.9 71 46-128 2-76 (77)
248 PF06764 DUF1223: Protein of u 93.9 1.2 2.5E-05 29.8 8.7 79 46-130 2-100 (202)
249 cd03032 ArsC_Spx Arsenate Redu 93.8 0.18 3.8E-06 30.4 4.4 34 46-84 2-35 (115)
250 PRK12559 transcriptional regul 93.5 0.16 3.4E-06 31.5 3.9 33 46-83 2-34 (131)
251 PRK13730 conjugal transfer pil 93.1 0.25 5.4E-06 32.9 4.5 42 83-125 150-191 (212)
252 cd00570 GST_N_family Glutathio 93.0 0.69 1.5E-05 24.0 6.6 56 48-108 3-60 (71)
253 cd03024 DsbA_FrnE DsbA family, 93.0 0.15 3.2E-06 33.4 3.5 36 85-124 165-200 (201)
254 cd03051 GST_N_GTT2_like GST_N 92.6 0.9 1.9E-05 24.3 6.1 57 47-107 2-62 (74)
255 KOG2792|consensus 92.4 0.5 1.1E-05 32.6 5.3 89 42-130 139-277 (280)
256 PF13417 GST_N_3: Glutathione 92.1 1.1 2.5E-05 24.4 9.6 72 48-130 1-73 (75)
257 PF04592 SelP_N: Selenoprotein 91.9 0.46 1E-05 32.3 4.7 43 40-82 24-71 (238)
258 PRK13344 spxA transcriptional 91.8 0.38 8.2E-06 29.8 4.0 34 46-84 2-35 (132)
259 cd03045 GST_N_Delta_Epsilon GS 91.1 1.5 3.2E-05 23.6 5.8 56 47-107 2-61 (74)
260 PF02630 SCO1-SenC: SCO1/SenC; 91.1 1.2 2.7E-05 28.8 6.0 43 41-83 51-98 (174)
261 PF04134 DUF393: Protein of un 90.7 0.56 1.2E-05 27.9 3.9 58 48-106 1-61 (114)
262 PF05988 DUF899: Bacterial pro 90.7 2 4.3E-05 28.9 6.7 78 33-110 59-170 (211)
263 KOG0911|consensus 90.3 1.8 3.8E-05 29.4 6.1 53 52-109 152-206 (227)
264 cd03022 DsbA_HCCA_Iso DsbA fam 90.2 0.35 7.7E-06 31.3 2.9 34 86-124 158-191 (192)
265 PF06953 ArsD: Arsenical resis 90.1 3 6.4E-05 25.6 6.9 53 71-126 38-100 (123)
266 PF06491 Disulph_isomer: Disul 90.1 3.1 6.7E-05 25.8 8.9 103 24-127 17-131 (136)
267 cd03055 GST_N_Omega GST_N fami 88.8 2.9 6.3E-05 23.7 6.4 60 45-108 18-78 (89)
268 PF09695 YtfJ_HI0045: Bacteria 88.0 5.2 0.00011 25.7 8.0 39 87-125 115-155 (160)
269 PF01216 Calsequestrin: Calseq 87.6 9 0.00019 28.0 10.0 108 24-131 249-371 (383)
270 cd03059 GST_N_SspA GST_N famil 87.4 3 6.5E-05 22.2 8.8 56 47-107 2-58 (73)
271 cd03033 ArsC_15kD Arsenate Red 86.7 1.4 3.1E-05 26.5 3.7 34 46-84 2-35 (113)
272 PF09822 ABC_transp_aux: ABC-t 84.6 11 0.00024 26.1 12.2 57 39-95 21-88 (271)
273 COG0386 BtuE Glutathione perox 84.4 8.5 0.00018 24.7 7.8 31 99-129 131-161 (162)
274 COG3011 Predicted thiol-disulf 84.4 7.9 0.00017 24.2 6.8 68 41-109 5-74 (137)
275 TIGR00014 arsC arsenate reduct 84.1 1.8 3.8E-05 26.0 3.3 33 47-84 2-34 (114)
276 cd03025 DsbA_FrnE_like DsbA fa 83.6 2 4.3E-05 27.9 3.6 32 46-77 3-35 (193)
277 cd03034 ArsC_ArsC Arsenate Red 83.1 2.1 4.6E-05 25.6 3.3 33 47-84 2-34 (112)
278 KOG1422|consensus 81.0 14 0.00031 24.9 8.3 70 53-133 20-90 (221)
279 cd03025 DsbA_FrnE_like DsbA fa 79.1 3.9 8.4E-05 26.5 3.8 22 85-106 159-180 (193)
280 COG5429 Uncharacterized secret 79.0 8.9 0.00019 26.4 5.3 80 45-128 44-141 (261)
281 KOG1364|consensus 78.7 3.9 8.4E-05 29.6 3.8 59 71-129 130-190 (356)
282 COG1393 ArsC Arsenate reductas 77.7 5.2 0.00011 24.3 3.7 31 46-81 3-33 (117)
283 PF08806 Sep15_SelM: Sep15/Sel 77.1 6.1 0.00013 22.1 3.6 34 95-128 41-76 (78)
284 PF12617 LdpA_C: Iron-Sulfur b 76.3 9.7 0.00021 25.0 4.8 84 46-130 10-99 (183)
285 PF13778 DUF4174: Domain of un 74.0 17 0.00037 22.0 9.0 76 52-127 20-111 (118)
286 PRK10853 putative reductase; P 72.3 7.1 0.00015 23.7 3.4 34 46-84 2-35 (118)
287 TIGR01616 nitro_assoc nitrogen 72.3 9.4 0.0002 23.5 3.9 33 45-82 2-34 (126)
288 PF03960 ArsC: ArsC family; I 72.1 9.6 0.00021 22.5 3.9 32 49-85 1-32 (110)
289 cd03030 GRX_SH3BGR Glutaredoxi 72.0 17 0.00036 21.0 7.5 37 71-109 28-72 (92)
290 PF00352 TBP: Transcription fa 72.0 8 0.00017 21.9 3.4 30 97-128 50-79 (86)
291 KOG2244|consensus 71.8 8 0.00017 30.1 4.1 72 30-102 101-184 (786)
292 COG5494 Predicted thioredoxin/ 71.8 29 0.00062 23.6 7.1 73 46-127 13-87 (265)
293 PRK10026 arsenate reductase; P 70.2 10 0.00022 23.9 3.8 32 46-82 4-35 (141)
294 cd03052 GST_N_GDAP1 GST_N fami 68.9 16 0.00035 19.7 7.0 57 47-108 2-62 (73)
295 KOG0912|consensus 68.7 36 0.00077 24.6 6.5 106 24-130 210-321 (375)
296 cd03056 GST_N_4 GST_N family, 68.7 15 0.00033 19.3 7.2 56 48-108 3-62 (73)
297 PF11287 DUF3088: Protein of u 67.7 11 0.00023 22.7 3.3 49 54-102 24-75 (112)
298 COG3411 Ferredoxin [Energy pro 66.8 18 0.00039 19.4 3.9 31 96-130 17-47 (64)
299 COG0450 AhpC Peroxiredoxin [Po 65.7 37 0.00081 22.6 9.2 85 43-127 34-160 (194)
300 PF05176 ATP-synt_10: ATP10 pr 64.5 45 0.00098 23.2 8.3 84 42-125 122-247 (252)
301 cd03061 GST_N_CLIC GST_N famil 63.8 26 0.00057 20.2 8.6 69 52-131 20-89 (91)
302 cd03021 DsbA_GSTK DsbA family, 63.2 8.4 0.00018 25.6 2.6 38 86-124 170-208 (209)
303 PF04908 SH3BGR: SH3-binding, 62.3 30 0.00065 20.3 4.8 41 47-87 3-45 (99)
304 TIGR02743 TraW type-F conjugat 61.3 10 0.00022 25.4 2.7 27 82-109 172-198 (202)
305 COG3634 AhpF Alkyl hydroperoxi 60.2 70 0.0015 23.9 7.4 80 42-132 18-98 (520)
306 PF05673 DUF815: Protein of un 58.8 47 0.001 23.1 5.6 84 44-132 53-139 (249)
307 cd03071 PDI_b'_NRX PDIb' famil 56.8 41 0.0009 20.2 7.6 86 42-128 14-115 (116)
308 COG2101 SPT15 TATA-box binding 56.0 21 0.00046 23.4 3.3 29 98-128 55-83 (185)
309 TIGR03759 conj_TIGR03759 integ 54.5 63 0.0014 21.7 6.2 40 44-86 110-149 (200)
310 PRK13738 conjugal transfer pil 54.3 16 0.00036 24.6 2.8 28 82-109 170-198 (209)
311 PRK09481 sspA stringent starva 54.2 61 0.0013 21.4 9.8 63 41-108 6-69 (211)
312 cd03053 GST_N_Phi GST_N family 54.0 33 0.00071 18.2 6.2 57 46-107 2-62 (76)
313 cd04518 TBP_archaea archaeal T 53.8 25 0.00054 23.0 3.5 29 98-128 140-168 (174)
314 PRK00366 ispG 4-hydroxy-3-meth 53.6 33 0.00071 25.2 4.3 55 73-127 298-356 (360)
315 cd03062 TRX_Fd_Sucrase TRX-lik 53.2 43 0.00094 19.4 4.2 34 95-132 52-87 (97)
316 cd00652 TBP_TLF TATA box bindi 53.1 25 0.00055 22.9 3.5 29 98-128 141-169 (174)
317 PLN00062 TATA-box-binding prot 53.0 25 0.00055 23.1 3.5 29 98-128 140-168 (179)
318 PRK00394 transcription factor; 52.8 26 0.00057 23.0 3.5 29 98-128 141-169 (179)
319 cd04516 TBP_eukaryotes eukaryo 52.3 27 0.00058 22.8 3.5 28 99-128 141-168 (174)
320 PF07511 DUF1525: Protein of u 51.0 45 0.00097 20.2 4.0 34 88-125 76-109 (114)
321 cd04517 TLF TBP-like factors ( 49.8 31 0.00066 22.5 3.5 29 98-128 141-169 (174)
322 PF00255 GSHPx: Glutathione pe 48.8 57 0.0012 19.5 4.7 41 42-83 21-63 (108)
323 COG4604 CeuD ABC-type enteroch 46.4 67 0.0014 22.0 4.6 47 55-109 169-216 (252)
324 COG3531 Predicted protein-disu 46.4 35 0.00075 23.0 3.3 33 44-77 2-34 (212)
325 COG0821 gcpE 1-hydroxy-2-methy 46.4 65 0.0014 23.6 4.8 76 54-129 264-352 (361)
326 TIGR02174 CXXU_selWTH selT/sel 45.8 15 0.00033 20.0 1.4 26 99-124 43-71 (72)
327 KOG4277|consensus 45.7 1.2E+02 0.0025 22.1 8.4 93 24-126 134-229 (468)
328 PF09936 Methyltrn_RNA_4: SAM- 45.7 27 0.00059 23.0 2.7 24 30-53 120-143 (185)
329 TIGR03757 conj_TIGR03757 integ 44.6 70 0.0015 19.4 4.1 33 88-124 77-109 (113)
330 COG4752 Uncharacterized protei 44.1 34 0.00073 21.9 2.8 26 32-57 123-148 (190)
331 PF04551 GcpE: GcpE protein; 43.6 34 0.00074 25.1 3.2 57 71-127 296-358 (359)
332 KOG3445|consensus 40.5 94 0.002 19.6 9.2 76 46-132 26-106 (145)
333 KOG1731|consensus 40.3 59 0.0013 25.6 4.1 59 71-130 213-271 (606)
334 cd03049 GST_N_3 GST_N family, 40.1 58 0.0013 17.1 5.4 59 48-108 3-62 (73)
335 PF14307 Glyco_tran_WbsX: Glyc 40.0 64 0.0014 23.4 4.2 41 41-81 157-199 (345)
336 PRK13669 hypothetical protein; 38.8 74 0.0016 17.9 4.4 55 64-130 20-74 (78)
337 cd00862 ProRS_anticodon_zinc P 38.8 86 0.0019 20.9 4.4 46 4-58 111-158 (202)
338 COG3581 Uncharacterized protei 38.6 1E+02 0.0022 23.2 4.9 52 31-82 56-113 (420)
339 TIGR00612 ispG_gcpE 1-hydroxy- 38.6 79 0.0017 23.2 4.3 65 49-113 260-334 (346)
340 KOG4079|consensus 38.2 85 0.0019 19.8 3.9 37 94-130 72-109 (169)
341 PF07700 HNOB: Heme NO binding 37.8 90 0.0019 20.0 4.3 40 43-82 128-169 (171)
342 PF14421 LmjF365940-deam: A di 35.6 58 0.0012 21.6 3.0 27 53-82 156-182 (193)
343 KOG1651|consensus 35.3 41 0.00089 21.9 2.3 31 99-129 140-170 (171)
344 PF02484 Rhabdo_NV: Rhabdoviru 35.0 35 0.00075 19.7 1.7 42 90-131 18-59 (111)
345 cd03044 GST_N_EF1Bgamma GST_N 34.3 78 0.0017 16.8 5.5 57 48-108 3-62 (75)
346 PHA02151 hypothetical protein 33.7 24 0.00052 22.7 1.1 12 44-55 205-216 (217)
347 TIGR00762 DegV EDD domain prot 32.8 1.3E+02 0.0029 20.9 4.8 43 82-126 10-52 (275)
348 KOG0095|consensus 32.7 67 0.0014 20.7 2.9 37 43-79 80-116 (213)
349 KOG2824|consensus 32.5 1.9E+02 0.004 20.6 5.2 61 42-109 130-203 (281)
350 PF11317 DUF3119: Protein of u 32.3 1.2E+02 0.0026 18.5 4.1 34 94-127 81-114 (116)
351 PF11072 DUF2859: Protein of u 31.8 84 0.0018 19.9 3.2 17 84-100 120-136 (142)
352 cd03058 GST_N_Tau GST_N family 31.8 85 0.0018 16.5 8.5 55 48-107 3-59 (74)
353 PF14097 SpoVAE: Stage V sporu 31.4 1E+02 0.0023 20.2 3.6 45 8-52 17-62 (180)
354 PRK10387 glutaredoxin 2; Provi 31.3 1.5E+02 0.0033 19.2 8.4 56 49-108 4-59 (210)
355 PF07351 DUF1480: Protein of u 29.6 99 0.0022 17.3 2.9 39 72-113 24-66 (80)
356 COG2761 FrnE Predicted dithiol 29.4 1.7E+02 0.0038 20.1 4.6 27 44-70 6-32 (225)
357 PF08348 PAS_6: YheO-like PAS 27.9 1.5E+02 0.0032 18.0 5.9 56 60-126 5-61 (118)
358 COG4097 Predicted ferric reduc 27.8 1.7E+02 0.0036 22.1 4.6 47 42-88 342-388 (438)
359 COG3054 Predicted transcriptio 27.2 1.8E+02 0.0039 18.8 5.0 39 87-125 136-177 (184)
360 PF10865 DUF2703: Domain of un 27.0 1.6E+02 0.0034 18.1 4.8 52 52-108 13-72 (120)
361 TIGR03439 methyl_EasF probable 26.7 1.4E+02 0.0031 21.5 4.1 38 44-84 78-115 (319)
362 TIGR02652 conserved hypothetic 26.6 25 0.00054 22.1 0.3 13 53-65 11-23 (163)
363 PF09654 DUF2396: Protein of u 26.5 25 0.00053 22.1 0.2 13 53-65 8-20 (161)
364 PF06279 DUF1033: Protein of u 26.3 48 0.0011 20.3 1.4 29 42-70 57-89 (120)
365 KOG0868|consensus 26.3 1.8E+02 0.0039 19.5 4.1 61 42-109 4-69 (217)
366 COG1519 KdtA 3-deoxy-D-manno-o 26.2 2.6E+02 0.0055 21.3 5.3 36 45-80 50-85 (419)
367 cd06538 CIDE_N_FSP27 CIDE_N do 25.7 1.1E+02 0.0024 17.3 2.7 23 87-109 30-52 (79)
368 cd03054 GST_N_Metaxin GST_N fa 25.7 1.1E+02 0.0024 15.9 6.8 46 52-108 14-59 (72)
369 PF10589 NADH_4Fe-4S: NADH-ubi 25.4 30 0.00065 17.1 0.4 18 53-70 18-35 (46)
370 PF02645 DegV: Uncharacterised 25.3 63 0.0014 22.6 2.1 42 83-127 12-54 (280)
371 PF05626 DUF790: Protein of un 24.7 2.4E+02 0.0053 21.1 5.0 36 96-131 303-339 (379)
372 cd06537 CIDE_N_B CIDE_N domain 24.6 1.1E+02 0.0024 17.3 2.6 23 87-109 30-52 (81)
373 COG1307 DegV Uncharacterized p 24.4 2.2E+02 0.0049 20.1 4.7 39 81-121 11-49 (282)
374 PF02591 DUF164: Putative zinc 24.0 86 0.0019 16.0 2.0 36 33-68 4-41 (56)
375 COG2077 Tpx Peroxiredoxin [Pos 23.9 2.1E+02 0.0046 18.5 4.9 39 44-82 47-85 (158)
376 PLN02402 cytidine deaminase 23.6 1.3E+02 0.0029 21.6 3.4 22 43-64 93-114 (303)
377 COG2999 GrxB Glutaredoxin 2 [P 23.6 1E+02 0.0022 20.5 2.6 53 52-108 7-59 (215)
378 PHA02513 V1 structural protein 23.6 44 0.00095 20.1 0.9 28 48-75 33-60 (135)
379 PF07293 DUF1450: Protein of u 23.4 1.5E+02 0.0033 16.6 3.5 60 61-132 17-76 (78)
380 PF00708 Acylphosphatase: Acyl 23.3 1.5E+02 0.0033 16.6 3.4 40 86-129 25-64 (91)
381 COG4312 Uncharacterized protei 22.8 2.7E+02 0.0058 19.3 5.3 49 33-81 65-120 (247)
382 COG4699 Uncharacterized protei 22.5 56 0.0012 19.7 1.2 28 43-70 58-89 (120)
383 KOG0854|consensus 22.0 1.9E+02 0.0041 19.3 3.6 41 43-83 32-76 (224)
384 PF14424 Toxin-deaminase: The 21.6 2.1E+02 0.0047 17.7 4.3 27 51-80 105-131 (133)
385 PF06220 zf-U1: U1 zinc finger 21.5 26 0.00057 16.6 -0.3 9 53-61 5-13 (38)
386 PF02702 KdpD: Osmosensitive K 21.2 2.8E+02 0.0061 18.9 7.3 68 42-109 4-72 (211)
387 TIGR03765 ICE_PFL_4695 integra 21.2 93 0.002 18.6 1.9 17 84-100 82-98 (105)
388 TIGR02182 GRXB Glutaredoxin, G 21.0 2.6E+02 0.0056 18.4 8.6 54 49-108 3-58 (209)
389 KOG1371|consensus 20.7 3.4E+02 0.0074 20.0 4.9 63 37-102 22-84 (343)
390 cd05855 Ig_TrkB_d5 Fifth domai 20.6 78 0.0017 17.5 1.5 14 96-109 12-25 (79)
391 COG1062 AdhC Zn-dependent alco 20.4 47 0.001 24.4 0.7 16 45-60 82-97 (366)
392 PF10405 BHD_3: Rad4 beta-hair 20.4 1.7E+02 0.0038 16.2 3.7 42 81-122 26-70 (76)
393 cd03021 DsbA_GSTK DsbA family, 20.2 2.7E+02 0.0059 18.3 4.3 35 45-79 2-37 (209)
394 PF02042 RWP-RK: RWP-RK domain 20.2 87 0.0019 16.1 1.5 15 84-98 32-46 (52)
395 KOG2990|consensus 20.1 83 0.0018 22.4 1.8 22 43-64 41-65 (317)
396 cd05863 Ig2_VEGFR-3 Second imm 20.1 98 0.0021 16.4 1.8 14 96-109 12-25 (67)
No 1
>KOG0910|consensus
Probab=99.96 E-value=4.7e-29 Score=153.68 Aligned_cols=107 Identities=35% Similarity=0.776 Sum_probs=101.9
Q ss_pred ccceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 23 FKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
...+...+.++|++.+.+++.|++|.|||+||++|+.+.|.++++..+ .+.++++++|.|++++++.+|+|.++||+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 446777899999999999999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 102 VKNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 102 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
|+||+...++.|..+.+.+.++|++.++
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 2
>PHA02278 thioredoxin-like protein
Probab=99.94 E-value=1.8e-25 Score=132.78 Aligned_cols=93 Identities=13% Similarity=0.333 Sum_probs=82.7
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCC----HhHHHhCCCCccceEEEEeC
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKN----AELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~ 104 (135)
+.++|.+.+ +.+++++|+|||+||++|+.+.|.+++++++ ...+.|+.+|++.+ +.++++|+|.++||+++|++
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 457788766 4577999999999999999999999999887 55688999999986 68999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHH
Q psy6819 105 GLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 105 g~~~~~~~g~~~~~~l~~~ 123 (135)
|+.+.+..|..+.+.+.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999998888887764
No 3
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=3.6e-25 Score=131.61 Aligned_cols=100 Identities=32% Similarity=0.658 Sum_probs=93.7
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
...+.++|.+.+.+.+++++|+||++||++|+.+.|.++++++. .+++.|+.||++.++.++++|+|+++|++++|++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 45678899998888788999999999999999999999999998 44999999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHHHHHHh
Q psy6819 106 LVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+...++.|..+.++|.+||++
T Consensus 82 ~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 82 KEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEEEEEESSSSHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHc
Confidence 999999999999999999986
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=2e-25 Score=133.72 Aligned_cols=86 Identities=14% Similarity=0.278 Sum_probs=77.6
Q ss_pred hhHHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 31 NEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 31 ~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.+++.+.+.. +++++||.|||+||++|+.+.|.+++++++ .+.+.|++||+|++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4677777764 578999999999999999999999999999 44579999999999999999999999999999999999
Q ss_pred EEEecCCC
Q psy6819 109 DKFIGLIE 116 (135)
Q Consensus 109 ~~~~g~~~ 116 (135)
.+..|..+
T Consensus 82 ~~~~G~~~ 89 (114)
T cd02954 82 KIDLGTGN 89 (114)
T ss_pred EEEcCCCC
Confidence 99988654
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.93 E-value=2.9e-25 Score=132.57 Aligned_cols=98 Identities=24% Similarity=0.487 Sum_probs=88.8
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
...+.++|.+.+.+.+++++|.||++||++|+.+.|.+++++++ .+.+.|+.+|++.++.++++|+|+++||+++|.+|
T Consensus 4 ~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 4 ITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 34578899998888788999999999999999999999999998 66799999999999999999999999999999777
Q ss_pred -eEEEEEecCCC-HHHHHHHH
Q psy6819 106 -LVIDKFIGLIE-NEMIENMV 124 (135)
Q Consensus 106 -~~~~~~~g~~~-~~~l~~~i 124 (135)
+.+.++.|..+ .+++.+||
T Consensus 84 ~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 84 ASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCceEccCCCCCHHHHHhhC
Confidence 88899999887 88888764
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.93 E-value=4.9e-25 Score=130.98 Aligned_cols=97 Identities=19% Similarity=0.340 Sum_probs=87.3
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 104 (135)
+...+.++|.+.+. .+++++|.||++||++|+.+.|.++++++. .+.+.|+.||++.++.++++|+|+++||+++|++
T Consensus 3 ~~~l~~~~f~~~v~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAVN-SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHhc-CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 44557888988774 458999999999999999999999999998 6679999999999999999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHH
Q psy6819 105 GLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 105 g~~~~~~~g~~~~~~l~~~ 123 (135)
|+.+.++.|..+.+.|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9988899999999988775
No 7
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.93 E-value=1.7e-24 Score=129.05 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=85.3
Q ss_pred ChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH---hHHHhCCCCccceEEEEeCC
Q psy6819 30 NNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA---ELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 30 ~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~g 105 (135)
+.++|.+.+.+. +++++|.||++||++|+.+.|.+++++++.+++.|+.||.++++ .++++|+|+++||+++|++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 567888888754 78999999999999999999999999988778999999999874 79999999999999999999
Q ss_pred eEEEEEecCCCHHHHHHHHHh
Q psy6819 106 LVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+.+.++.|. ..+++.+.+..
T Consensus 82 ~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 82 EKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eEEEEEeCC-CHHHHHHHHHh
Confidence 999999997 67777776653
No 8
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.93 E-value=1.2e-24 Score=132.08 Aligned_cols=103 Identities=12% Similarity=0.238 Sum_probs=93.4
Q ss_pred ceEecChhHHHHHHhcCCCcEEEEEEcCCChh--hh--hhhHHHHHHHhc---CCCcEEEEEeCCCCHhHHHhCCCCccc
Q psy6819 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEP--CH--LLTPQLKKMLGN---SDSIDLAIIDVEKNAELVHTFEVKAVP 97 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~--C~--~~~~~~~~l~~~---~~~v~~~~vd~~~~~~~~~~~~v~~~P 97 (135)
.+...|.++|.+.+.+++.++|++||+.||++ |+ .+.|.+.+++.+ .++++|++||++.++.++++|+|+++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 44555789999999999999999999999977 99 888888888777 567999999999999999999999999
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
|+++|++|+.+. +.|..+.+.+.++|++++
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999887 999999999999999875
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=9.1e-25 Score=131.69 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=88.2
Q ss_pred cceEecChhHHHHH--HhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHH-HhCCCCccceE
Q psy6819 24 KSYIIENNEQFIKH--VMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV-HTFEVKAVPAV 99 (135)
Q Consensus 24 ~~~~~~~~~~~~~~--~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~-~~~~v~~~Pt~ 99 (135)
+.+...+.++|.+. +...+++++|.||++||++|+.+.|.++++++. .+.+.|++||++.+..++ ++|+|.++||+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 34556677888875 346688999999999999999999999999998 667999999999999999 58999999999
Q ss_pred EEEeCCeEEEEEecCCCHHHHHHH
Q psy6819 100 LAVKNGLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 100 ~~~~~g~~~~~~~g~~~~~~l~~~ 123 (135)
++|++|+...++.|..+.+.+..|
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhh
Confidence 999999988899999999998876
No 10
>PRK09381 trxA thioredoxin; Provisional
Probab=99.93 E-value=3.6e-24 Score=128.89 Aligned_cols=102 Identities=23% Similarity=0.571 Sum_probs=93.3
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
...+.++|.+.+.+.+++++|.||++||++|+.+.|.++++++. .+++.++.+|++.++.++++|+|+++|++++|++|
T Consensus 6 ~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G 85 (109)
T PRK09381 6 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 85 (109)
T ss_pred eeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCC
Confidence 33466888887777788999999999999999999999999998 66799999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHHHHHHhhC
Q psy6819 106 LVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
+.+.+..|..+.+++..+|+..+
T Consensus 86 ~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 86 EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999998765
No 11
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.93 E-value=1.4e-24 Score=131.07 Aligned_cols=98 Identities=18% Similarity=0.414 Sum_probs=87.6
Q ss_pred ChhHHHHHHhc--CCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 30 NNEQFIKHVMN--NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 30 ~~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
+.++|.+.+.. .+++++|.||++||++|+.+.|.++++++. ..++.++.||++.++.++++|+|+++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 55677765543 578999999999999999999999999988 33699999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHHHHHHhh
Q psy6819 106 LVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
+.+.+..|..+.+++.++|+++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999999999998764
No 12
>KOG0907|consensus
Probab=99.92 E-value=2.9e-24 Score=127.71 Aligned_cols=94 Identities=26% Similarity=0.554 Sum_probs=83.5
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEE
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKF 111 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 111 (135)
+........+++++||+|||+||++|+.+.|.+.+++.+++++.|+++|+|+..++++.++|+++||++++++|+.+.++
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~ 90 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEV 90 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEE
Confidence 34444444557999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHh
Q psy6819 112 IGLIENEMIENMVSK 126 (135)
Q Consensus 112 ~g~~~~~~l~~~i~~ 126 (135)
.|. +.+++++.+..
T Consensus 91 vGa-~~~~l~~~i~~ 104 (106)
T KOG0907|consen 91 VGA-NKAELEKKIAK 104 (106)
T ss_pred ecC-CHHHHHHHHHh
Confidence 998 67788777764
No 13
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=2.2e-24 Score=126.96 Aligned_cols=93 Identities=26% Similarity=0.485 Sum_probs=84.4
Q ss_pred HHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEE
Q psy6819 33 QFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDK 110 (135)
Q Consensus 33 ~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 110 (135)
+|.+.+.++ +++++|+||++||++|+.+.|.++++++. .+.+.++.||++.++.++++|+|.++|++++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 466666554 78999999999999999999999999988 5678999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHH
Q psy6819 111 FIGLIENEMIENMVS 125 (135)
Q Consensus 111 ~~g~~~~~~l~~~i~ 125 (135)
+.|..+.+++..+|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999998873
No 14
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=6.8e-24 Score=126.27 Aligned_cols=98 Identities=22% Similarity=0.483 Sum_probs=86.8
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-C-CCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S-DSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 104 (135)
.+.+.+++.+.+ +++++++|.||++||++|+.+.|.++++++. . ..+.|+.+|++ +++++++|+|+++||+++|++
T Consensus 3 ~i~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 3 EINNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred EccCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEEC
Confidence 457888888865 4578999999999999999999999999887 3 35899999999 788999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHHHhh
Q psy6819 105 GLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 105 g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
|+.+.+..|. +.+.+.++|+.+
T Consensus 81 g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 81 GELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred CEEEEEEecC-ChHHHHHHHhhC
Confidence 9999999996 889999988753
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=146.25 Aligned_cols=107 Identities=30% Similarity=0.614 Sum_probs=97.8
Q ss_pred cceEecChhHHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEE
Q psy6819 24 KSYIIENNEQFIKHVMNN--PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 100 (135)
+.+.-.|..+|...+... .+|++|+||+|||++|+.+.|.+++++.+ .+.+.+++||+|.++.++.+|||+++||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 345556778888877743 55999999999999999999999999999 889999999999999999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 101 AVKNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 101 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.|++|+++.-+.|...++.+++|+++++..
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999998865
No 16
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.91 E-value=6.7e-24 Score=125.78 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=80.5
Q ss_pred HHHHHHh-cCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC-CCHhHHHhCCCCccceEEEEeCCeEEEE
Q psy6819 33 QFIKHVM-NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE-KNAELVHTFEVKAVPAVLAVKNGLVIDK 110 (135)
Q Consensus 33 ~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 110 (135)
.+.+.+. ..+++++|.||++||++|+.+.|.++++++..+++.++.||.+ .++.++++|+|.++||+++|++| .+.+
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 3444444 4578999999999999999999999999988667999999998 88999999999999999999989 7789
Q ss_pred EecCCCHHHHHHHH
Q psy6819 111 FIGLIENEMIENMV 124 (135)
Q Consensus 111 ~~g~~~~~~l~~~i 124 (135)
+.|..+.+++.+||
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999998875
No 17
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=2.3e-23 Score=125.17 Aligned_cols=98 Identities=17% Similarity=0.408 Sum_probs=84.7
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----C---CCcEEEEEeCCCCHhHHHhCCCCccce
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----S---DSIDLAIIDVEKNAELVHTFEVKAVPA 98 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt 98 (135)
+...+.++|.+.+ ..+++++|.||++||++|+.+.|.++++++. . +.+.++.+|++.++.++++|+|+++||
T Consensus 3 v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 3 IVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred eEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 4455788899866 5567899999999999999999999988764 1 258999999999999999999999999
Q ss_pred EEEEeCCe-EEEEEecCCCHHHHHHHH
Q psy6819 99 VLAVKNGL-VIDKFIGLIENEMIENMV 124 (135)
Q Consensus 99 ~~~~~~g~-~~~~~~g~~~~~~l~~~i 124 (135)
+++|++|+ ....+.|..+.++|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999998 447788999999998875
No 18
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=2.9e-23 Score=128.81 Aligned_cols=104 Identities=14% Similarity=0.277 Sum_probs=90.4
Q ss_pred EecChhHHHHHHh-cCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEE-EEe
Q psy6819 27 IIENNEQFIKHVM-NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVL-AVK 103 (135)
Q Consensus 27 ~~~~~~~~~~~~~-~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~ 103 (135)
.+.+.+++++.+. .+++++||.||++||++|+.+.|.+++++++ .+.+.|++||+|+++++++.|+|++.|+++ +|+
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 4568899999887 4478999999999999999999999999999 445888999999999999999999887776 779
Q ss_pred CCe-EEEEEec--------CCCHHHHHHHHHhhCCC
Q psy6819 104 NGL-VIDKFIG--------LIENEMIENMVSKLLPK 130 (135)
Q Consensus 104 ~g~-~~~~~~g--------~~~~~~l~~~i~~~~~~ 130 (135)
+|+ .+.+..| ..+.++|.+.++.++..
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 999 8889999 56788888888776543
No 19
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=9e-23 Score=127.63 Aligned_cols=99 Identities=24% Similarity=0.609 Sum_probs=90.2
Q ss_pred cChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeE
Q psy6819 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 29 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
.+.+++.+.+ +.+++++|+||++||++|+.+.+.+++++++ .+++.++.+|++.++.++++|+|.++|++++|++|+.
T Consensus 40 ~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 40 ATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred cCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence 4667788755 4578999999999999999999999999988 6789999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHhhC
Q psy6819 108 IDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 108 ~~~~~g~~~~~~l~~~i~~~~ 128 (135)
+.++.|..+.+.+.+++++++
T Consensus 119 v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 119 VDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999998764
No 20
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.91 E-value=3.6e-23 Score=123.26 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=86.9
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEE
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEW--CEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 100 (135)
..+.-.+.++|.+.+ ..+.++||.||++| |+.|+.+.|.+++++++ .+.+.|+++|++.+++++.+|+|+++||++
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 456667778888655 66678999999997 99999999999999999 556899999999999999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHHHH
Q psy6819 101 AVKNGLVIDKFIGLIENEMIE 121 (135)
Q Consensus 101 ~~~~g~~~~~~~g~~~~~~l~ 121 (135)
+|++|+.+.+..|..+.+++.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 999999999999998888875
No 21
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.91 E-value=1e-22 Score=123.16 Aligned_cols=90 Identities=20% Similarity=0.379 Sum_probs=80.9
Q ss_pred ceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC
Q psy6819 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 104 (135)
...+.+.++|.+.+.+ +++++|+||++||+.|+.+.|.+++++++.++++|++||.+..+.++++|+|.++||+++|++
T Consensus 6 v~~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~ 84 (113)
T cd02989 6 YREVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKN 84 (113)
T ss_pred eEEeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEEC
Confidence 4456677888887765 468999999999999999999999999887789999999999999999999999999999999
Q ss_pred CeEEEEEecCC
Q psy6819 105 GLVIDKFIGLI 115 (135)
Q Consensus 105 g~~~~~~~g~~ 115 (135)
|+.+.++.|..
T Consensus 85 G~~v~~~~g~~ 95 (113)
T cd02989 85 GKTVDRIVGFE 95 (113)
T ss_pred CEEEEEEECcc
Confidence 99999887764
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.91 E-value=3.1e-23 Score=124.65 Aligned_cols=99 Identities=22% Similarity=0.412 Sum_probs=87.7
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCC--CHhHHHhCCCCccceEEEEe
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEK--NAELVHTFEVKAVPAVLAVK 103 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~ 103 (135)
...+.++|.+.+.+.+++++|.||++||++|+.+.|.++++++. .+.+.++.+|++. ++.++++|+|+++|++++|.
T Consensus 3 ~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 3 YELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred EEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 34577889988888888999999999999999999999999988 6679999999998 88999999999999999997
Q ss_pred CCe-----EEEEEecCCCHHHHHHHHH
Q psy6819 104 NGL-----VIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 104 ~g~-----~~~~~~g~~~~~~l~~~i~ 125 (135)
+|+ ....+.|..+.+.|.+||.
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHhC
Confidence 775 4567889999999998873
No 23
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.91 E-value=5.5e-23 Score=136.97 Aligned_cols=108 Identities=20% Similarity=0.397 Sum_probs=95.5
Q ss_pred cceEecChhHHHHHHhcC----CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccce
Q psy6819 24 KSYIIENNEQFIKHVMNN----PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPA 98 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~----~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt 98 (135)
..+...+.++|.+.+... +++++|.||++||++|+.+.|.+++++++ .+.+.++.+|++.++.++++|+|+++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 445666888999876532 57899999999999999999999999988 6679999999999999999999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 99 VLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 99 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
+++|++|+.+....|..+.+++.+|+.+.+...
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999888889899999999998876544
No 24
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.91 E-value=9.2e-23 Score=120.70 Aligned_cols=99 Identities=23% Similarity=0.665 Sum_probs=90.2
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
+.+++.+.+.+++++++|+||++||+.|+.+.+.++++++. .+++.|+.+|++.++.++++|+|.++|++++|.+|+..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45678887777778999999999999999999999999977 66799999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHhhC
Q psy6819 109 DKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~ 128 (135)
.+..|..+.+.+.++|++.+
T Consensus 82 ~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeecCCCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=7.9e-23 Score=121.41 Aligned_cols=96 Identities=21% Similarity=0.459 Sum_probs=83.7
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 104 (135)
...+.++|.+.+ . ++ ++|.||++||++|+.+.|.++++++. ..++.++.+|++.++.++++|+|+++||++++++
T Consensus 4 ~~l~~~~f~~~~-~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02994 4 VELTDSNWTLVL-E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKD 80 (101)
T ss_pred EEcChhhHHHHh-C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCC
Confidence 345778888755 3 23 79999999999999999999999987 3469999999999999999999999999999999
Q ss_pred CeEEEEEecCCCHHHHHHHHHh
Q psy6819 105 GLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 105 g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
|+. .++.|..+.++|.+++++
T Consensus 81 g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 81 GVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCE-EEecCCCCHHHHHHHHhC
Confidence 985 788999999999998863
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.90 E-value=2.4e-22 Score=119.59 Aligned_cols=98 Identities=21% Similarity=0.406 Sum_probs=87.7
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
...+.+++.+.+.+.+++++|.||++||++|+.+.|.+.++++. .+.+.++.+|++.++.++++|+|+++|++++|.+|
T Consensus 3 ~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 3 VELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred EEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 44577889888877777899999999999999999999999988 67899999999999999999999999999999877
Q ss_pred -eEEEEEecCCCHHHHHHHH
Q psy6819 106 -LVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 106 -~~~~~~~g~~~~~~l~~~i 124 (135)
+....+.|..+.+++.+|+
T Consensus 83 ~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CcceeecCCCCCHHHHHHHh
Confidence 5556788999999998886
No 27
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.90 E-value=2.5e-22 Score=125.98 Aligned_cols=100 Identities=19% Similarity=0.481 Sum_probs=86.7
Q ss_pred HHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCC--HhHHHhCCCCccceEEEE-eCCeEE
Q psy6819 33 QFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKN--AELVHTFEVKAVPAVLAV-KNGLVI 108 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~g~~~ 108 (135)
++.. ....+++++|+||++||++|+.+.|.+.++++. .+.+.|+.||++.. ..++++|+|.++|++++| ++|+.+
T Consensus 12 ~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 12 PPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3444 335578999999999999999999999999988 55688999988864 578999999999999999 689999
Q ss_pred EEEecCCCHHHHHHHHHhhCCCCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPKDKT 133 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~~~~ 133 (135)
.++.|..+.+++.++|++++...+.
T Consensus 91 ~~~~G~~~~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 91 GQSIGLQPKQVLAQNLDALVAGEPL 115 (142)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999876644
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.90 E-value=1.9e-22 Score=119.83 Aligned_cols=95 Identities=26% Similarity=0.571 Sum_probs=84.1
Q ss_pred ecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CC---CcEEEEEeCCCCHhHHHhCCCCccceEEEEe
Q psy6819 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SD---SIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103 (135)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 103 (135)
..+.++|...+.+ + +++|.||++||++|+.+.|.++++++. .+ .+.++.+|++.++.++++|+|.++||+++|+
T Consensus 4 ~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 4 ELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred ECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEe
Confidence 3467788887754 3 599999999999999999999999887 33 7999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCHHHHHHHH
Q psy6819 104 NGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 104 ~g~~~~~~~g~~~~~~l~~~i 124 (135)
+|+.+.++.|..+.+++.+||
T Consensus 82 ~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 82 DGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CCCeeeEeeCCCCHHHHHhhC
Confidence 999888999999999888764
No 29
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.90 E-value=2.5e-22 Score=118.35 Aligned_cols=93 Identities=24% Similarity=0.518 Sum_probs=83.8
Q ss_pred hhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 31 NEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 31 ~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.+++.+.+... +++++|+||++||+.|+.+.+.++++++. .+++.++.+|.+..++++++|++.++||+++|.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46777777655 68999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHH
Q psy6819 109 DKFIGLIENEMIENMV 124 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i 124 (135)
.+..|. +.+++.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 999997 677777655
No 30
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.89 E-value=1.5e-22 Score=122.60 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=78.8
Q ss_pred ecChhHHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 28 IENNEQFIKHVMNN--PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 28 ~~~~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
..+.++|.+.+.+. +++++|+||++||++|+.+.|.+++++++.++++|++||++.+ .++++|+|.++||+++|++|
T Consensus 8 ~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G 86 (113)
T cd02957 8 EISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNG 86 (113)
T ss_pred EEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECC
Confidence 34458998888766 3799999999999999999999999999977899999999998 99999999999999999999
Q ss_pred eEEEEEecCC
Q psy6819 106 LVIDKFIGLI 115 (135)
Q Consensus 106 ~~~~~~~g~~ 115 (135)
+.+.+..|..
T Consensus 87 ~~v~~~~G~~ 96 (113)
T cd02957 87 ELIDNIVGFE 96 (113)
T ss_pred EEEEEEecHH
Confidence 9999998853
No 31
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.89 E-value=5.6e-22 Score=116.98 Aligned_cols=93 Identities=17% Similarity=0.390 Sum_probs=84.8
Q ss_pred HHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEE
Q psy6819 33 QFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKF 111 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 111 (135)
.+...+.+.+++++++||++||+.|+.+.+.++++++. .+++.++.+|++.+++++++++|.++|++++|++|+.+.++
T Consensus 4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEE
Confidence 35566677889999999999999999999999999888 56799999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHH
Q psy6819 112 IGLIENEMIENMVS 125 (135)
Q Consensus 112 ~g~~~~~~l~~~i~ 125 (135)
.|..+.+++.++++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 99999999888763
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=7.5e-22 Score=117.08 Aligned_cols=97 Identities=26% Similarity=0.430 Sum_probs=85.9
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CC--CcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCe
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SD--SIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGL 106 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 106 (135)
+.++|.+.+. .+++++|.||++||+.|+.+.+.++++++. .+ ++.++.+|++.++.++++|+|.++|++++|.+|+
T Consensus 2 ~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 2 TASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred chhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 4567777665 678999999999999999999999999887 33 6999999999999999999999999999997777
Q ss_pred EEEEEecCCCHHHHHHHHHhh
Q psy6819 107 VIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 107 ~~~~~~g~~~~~~l~~~i~~~ 127 (135)
...++.|..+.++|..+|++.
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 677899999999999999875
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=2.7e-21 Score=122.01 Aligned_cols=91 Identities=13% Similarity=0.327 Sum_probs=80.5
Q ss_pred cceEecChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc-C-CCcEEEEEeCCCCHhHHHhCCCCc-----
Q psy6819 24 KSYIIENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S-DSIDLAIIDVEKNAELVHTFEVKA----- 95 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~-~~v~~~~vd~~~~~~~~~~~~v~~----- 95 (135)
..+...+.++|.+.+..+ +++++|.||++||++|+.+.|.+++++++ . .++.|+.||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 455666788898877544 57899999999999999999999999988 3 469999999999999999999988
Q ss_pred -cceEEEEeCCeEEEEEecC
Q psy6819 96 -VPAVLAVKNGLVIDKFIGL 114 (135)
Q Consensus 96 -~Pt~~~~~~g~~~~~~~g~ 114 (135)
+||+++|++|+.+.+..|.
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 108 QLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CCCEEEEEECCEEEEEEecc
Confidence 9999999999999999973
No 34
>PTZ00051 thioredoxin; Provisional
Probab=99.88 E-value=1.7e-21 Score=115.05 Aligned_cols=94 Identities=26% Similarity=0.545 Sum_probs=82.9
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
..+.+.+++...+ +.+++++|+||++||++|+.+.+.++++++..+++.|+.+|++.+..++++|+|.++||+++|++|
T Consensus 3 ~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 3 HIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred EEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 4566777777654 557789999999999999999999999999877899999999999999999999999999999999
Q ss_pred eEEEEEecCCCHHHHH
Q psy6819 106 LVIDKFIGLIENEMIE 121 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~ 121 (135)
+.+.++.|. ..+++.
T Consensus 82 ~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 82 SVVDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCC-CHHHhh
Confidence 999999997 566654
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=1.3e-21 Score=116.53 Aligned_cols=96 Identities=27% Similarity=0.450 Sum_probs=83.9
Q ss_pred ecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-C--CCcEEEEEeCCC--CHhHHHhCCCCccceEEEE
Q psy6819 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S--DSIDLAIIDVEK--NAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~--~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 102 (135)
..+..++...+.+ +++++|.||++||++|+.+.|.++++++. . +.+.++.+|++. ++.++++|+|+++|++++|
T Consensus 4 ~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~ 82 (104)
T cd02997 4 HLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYF 82 (104)
T ss_pred EechHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEE
Confidence 3456678776655 45899999999999999999999999877 3 668999999998 8999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHH
Q psy6819 103 KNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 103 ~~g~~~~~~~g~~~~~~l~~~i 124 (135)
++|+.+.++.|..+.+++.+||
T Consensus 83 ~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 83 ENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eCCCeeEEeCCCCCHHHHHhhC
Confidence 9999889999999999988764
No 36
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.88 E-value=2.2e-21 Score=115.60 Aligned_cols=98 Identities=13% Similarity=0.228 Sum_probs=81.7
Q ss_pred hhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCC-cEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 31 NEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDS-IDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 31 ~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.+++++.+.++ ++++||.|+++||++|+.+.|.+++++++.++ +.|+.||+|+.+++++.|+|++.||+++|++|+-+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 35677777755 89999999999999999999999999999666 99999999999999999999999999999999877
Q ss_pred EEEecC----------CCHHHHHHHHHhhC
Q psy6819 109 DKFIGL----------IENEMIENMVSKLL 128 (135)
Q Consensus 109 ~~~~g~----------~~~~~l~~~i~~~~ 128 (135)
.--.|. .+.+++...++-+.
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 533332 23477777766554
No 37
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.88 E-value=1.9e-21 Score=125.75 Aligned_cols=100 Identities=21% Similarity=0.388 Sum_probs=84.8
Q ss_pred ceEecChhHHHHHHhcCC--CcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEE
Q psy6819 25 SYIIENNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~--~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 102 (135)
.+.+.+.++|.+.+..++ .++||+||++||+.|+.+.|.++++++.++.++|++||++.. .++.+|+|.++||+++|
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTllly 142 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVY 142 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEE
Confidence 345555599998887654 489999999999999999999999999988899999999987 89999999999999999
Q ss_pred eCCeEEEEEecCC-------CHHHHHHHHH
Q psy6819 103 KNGLVIDKFIGLI-------ENEMIENMVS 125 (135)
Q Consensus 103 ~~g~~~~~~~g~~-------~~~~l~~~i~ 125 (135)
++|+.+.++.|.. +.+.|+.++.
T Consensus 143 k~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 143 KGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred ECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 9999999888753 3455655554
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.87 E-value=2e-21 Score=115.81 Aligned_cols=98 Identities=26% Similarity=0.450 Sum_probs=85.0
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-C--CCcEEEEEeCCC-CHhHHHhCCCCccceEEEE
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S--DSIDLAIIDVEK-NAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~--~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~ 102 (135)
...+.+++.+.+.+.+++++|.||++||++|+.+.|.++++++. . +++.++.+|++. ++.++++|+|+++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 34466788887766677999999999999999999999999988 3 579999999999 9999999999999999999
Q ss_pred eCC-eEEEEEecCCCHHHHHHHH
Q psy6819 103 KNG-LVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 103 ~~g-~~~~~~~g~~~~~~l~~~i 124 (135)
.+| +....+.|..+.+++.+||
T Consensus 83 ~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCHHHHHhhC
Confidence 655 6667888988999988874
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.86 E-value=4e-21 Score=114.37 Aligned_cols=97 Identities=24% Similarity=0.416 Sum_probs=84.5
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-C--CCcEEEEEeCCCCHhHHHhCCCCccceEEEEe
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S--DSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~--~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 103 (135)
...+.++|.+.+.+.+++++|.||++||++|+.+.|.++++++. . .++.++.+|++.+ +++..+++.++|++++|.
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 34567889888888778999999999999999999999999987 2 4699999999987 588899999999999998
Q ss_pred CCe--EEEEEecCCCHHHHHHHH
Q psy6819 104 NGL--VIDKFIGLIENEMIENMV 124 (135)
Q Consensus 104 ~g~--~~~~~~g~~~~~~l~~~i 124 (135)
+|+ ...++.|..+.+.+.+||
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 777 566789999999988875
No 40
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.86 E-value=2.8e-20 Score=121.70 Aligned_cols=100 Identities=20% Similarity=0.357 Sum_probs=84.1
Q ss_pred ccceEecChhHHHHHHhcCC--CcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEE
Q psy6819 23 FKSYIIENNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~--~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 100 (135)
...+...+.++|...+..++ .++||+||++||+.|+.+.+.|+++++.++.++|++||++.. ...|++.++||++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 34555557888988777553 589999999999999999999999999988899999999864 6899999999999
Q ss_pred EEeCCeEEEEEecC-------CCHHHHHHHHH
Q psy6819 101 AVKNGLVIDKFIGL-------IENEMIENMVS 125 (135)
Q Consensus 101 ~~~~g~~~~~~~g~-------~~~~~l~~~i~ 125 (135)
+|++|+.+.++.|. .+.+.|+.++.
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 99999999999885 34566666654
No 41
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.86 E-value=6.2e-21 Score=115.38 Aligned_cols=95 Identities=23% Similarity=0.448 Sum_probs=82.0
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEE--EE
Q psy6819 34 FIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVID--KF 111 (135)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~ 111 (135)
+.+.+. ++..++|+||++||++|+.+.|.++++++..+.+.+..+|.+.+++++++|+|.++||+++|++|.... ++
T Consensus 15 ~~~~l~-~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 15 FFKEMK-NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHhC-CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 444443 355688999999999999999999999987778999999999999999999999999999998765544 68
Q ss_pred ecCCCHHHHHHHHHhhCC
Q psy6819 112 IGLIENEMIENMVSKLLP 129 (135)
Q Consensus 112 ~g~~~~~~l~~~i~~~~~ 129 (135)
.|..+.+++.++|..++.
T Consensus 94 ~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EecCchHHHHHHHHHHHh
Confidence 899899999999998764
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.86 E-value=8.7e-21 Score=114.14 Aligned_cols=99 Identities=12% Similarity=0.268 Sum_probs=80.9
Q ss_pred eEecChhHHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-C-CCcEEEEEeCCC-CHhHHH-hCCCCccceE
Q psy6819 26 YIIENNEQFIKHVM--NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S-DSIDLAIIDVEK-NAELVH-TFEVKAVPAV 99 (135)
Q Consensus 26 ~~~~~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~-~~v~~~~vd~~~-~~~~~~-~~~v~~~Pt~ 99 (135)
+...+.++|...+. ..+++++|.||++||++|+.+.|.++++++. . .++.++.||++. +..+++ .|+|+++||+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE
Confidence 45567788887764 3478999999999999999999999999987 3 359999999997 567776 5999999999
Q ss_pred EEEeC-CeEEEEEecC-CCHHHHHHHH
Q psy6819 100 LAVKN-GLVIDKFIGL-IENEMIENMV 124 (135)
Q Consensus 100 ~~~~~-g~~~~~~~g~-~~~~~l~~~i 124 (135)
++|.+ +.....+.|. .+.+.|..||
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99955 4556678885 7888887764
No 43
>KOG0908|consensus
Probab=99.86 E-value=6.6e-21 Score=125.79 Aligned_cols=107 Identities=22% Similarity=0.464 Sum_probs=98.6
Q ss_pred cceEecChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEE
Q psy6819 24 KSYIIENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 102 (135)
+++.+.+..+|...+..+ .+.++|.|+++||++|+...|.+..++.+++...|.+||+|+...++..+||.+.||+++|
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 567888899999888755 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 103 KNGLVIDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 103 ~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
.||..+..+.|. ++..|++.+.+++...
T Consensus 82 ~ng~kid~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 82 RNGVKIDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred ecCeEeeeecCC-CHHHHHHHHHHHhccC
Confidence 999999999998 9999999998876543
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.86 E-value=2.7e-20 Score=113.86 Aligned_cols=100 Identities=12% Similarity=0.233 Sum_probs=81.3
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH-----------hHHHhCC
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA-----------ELVHTFE 92 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----------~~~~~~~ 92 (135)
+.+...+.+++.+.+.+ ++.++|+|+++||++|+.+.|.+.+++++ .++.++.+|++.+. ++.+.|+
T Consensus 6 ~~~~~it~~~~~~~i~~-~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 6 KGLEVTTVVRALEALDK-KETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ccceecCHHHHHHHHHc-CCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 45566788888887755 55699999999999999999999999988 45789999988543 4556665
Q ss_pred ----CCccceEEEEeCCeEEEEEec-CCCHHHHHHHHH
Q psy6819 93 ----VKAVPAVLAVKNGLVIDKFIG-LIENEMIENMVS 125 (135)
Q Consensus 93 ----v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 125 (135)
|.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999999 456889988764
No 45
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.86 E-value=1.5e-20 Score=112.17 Aligned_cols=93 Identities=19% Similarity=0.422 Sum_probs=79.5
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeE
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
++|.+ +.+ +++++|.||++||++|+.+.|.++++++. ..++.++.+|++..+.++++|+|.++||+++|++|..
T Consensus 7 ~~~~~-~~~-~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKD-VRK-EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhh-hcc-CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 44554 333 56899999999999999999999999887 2358999999999999999999999999999977754
Q ss_pred EEEEecCCCHHHHHHHHHhh
Q psy6819 108 IDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 108 ~~~~~g~~~~~~l~~~i~~~ 127 (135)
.++.|..+.+++.+++++.
T Consensus 85 -~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 -YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -eeecCCCCHHHHHHHHHhh
Confidence 6688999999999998864
No 46
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=3.9e-21 Score=114.73 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=79.0
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEeCCC----CHhHHHhCCCCccceEEEEe
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIIDVEK----NAELVHTFEVKAVPAVLAVK 103 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~ 103 (135)
+++.+.+ +.+++++|.||++||++|+.+.+.+ +++++. .+++.++.+|++. .+.++++|+|.++||+++|.
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 3455544 5568999999999999999999887 566666 4489999999987 57899999999999999996
Q ss_pred --CCeEEEEEecCCCHHHHHHHHH
Q psy6819 104 --NGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 104 --~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
+|+.+.++.|..+.+++.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 8999999999999999988763
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.84 E-value=3e-20 Score=109.50 Aligned_cols=94 Identities=24% Similarity=0.472 Sum_probs=82.5
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcC---CCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC-
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNS---DSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG- 105 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 105 (135)
+..+|.+.+.+.+ +++|.||++||+.|+.+.+.++++++.. +.+.++.+|++.++.++++|+|+++|++++|.+|
T Consensus 4 ~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 4 TDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred cHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 5567887666654 8999999999999999999999988773 7899999999999999999999999999999666
Q ss_pred eEEEEEecCCCHHHHHHHH
Q psy6819 106 LVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i 124 (135)
+...++.|..+.+++.+|+
T Consensus 83 ~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 83 KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccccCCCCcCHHHHHhhC
Confidence 7778899988888887764
No 48
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=5e-20 Score=113.34 Aligned_cols=98 Identities=16% Similarity=0.332 Sum_probs=80.1
Q ss_pred hHHHHHHhcCC-CcEEEEEEcCCChhhhhhhHHHH---HHHhc-CCCcEEEEEeCCCC-------------HhHHHhCCC
Q psy6819 32 EQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLK---KMLGN-SDSIDLAIIDVEKN-------------AELVHTFEV 93 (135)
Q Consensus 32 ~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~~~---~l~~~-~~~v~~~~vd~~~~-------------~~~~~~~~v 93 (135)
+++.... ..+ ++++|.||++||++|+.+.+.+. .+.+. ..++.++.+|++.+ ..++++|+|
T Consensus 4 ~~~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 4 EDLAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 3444434 445 89999999999999999998874 44444 45788999998864 688999999
Q ss_pred CccceEEEE-eC-CeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 94 KAVPAVLAV-KN-GLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 94 ~~~Pt~~~~-~~-g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.++||+++| .+ |+.+.+..|..+.+++.++|+.+++.
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999 55 79999999999999999999887653
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.84 E-value=9.7e-20 Score=105.55 Aligned_cols=91 Identities=30% Similarity=0.679 Sum_probs=81.7
Q ss_pred HHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEe
Q psy6819 33 QFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFI 112 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 112 (135)
++...+... ++++|+||++||+.|+.+.+.++++.+..+++.++.+|++.+..+++.|++.++|+++++.+|+.+..+.
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 345545444 7899999999999999999999999888778999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHH
Q psy6819 113 GLIENEMIENMV 124 (135)
Q Consensus 113 g~~~~~~l~~~i 124 (135)
|..+.+.+.++|
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 998888888876
No 50
>PTZ00062 glutaredoxin; Provisional
Probab=99.83 E-value=1.3e-19 Score=119.08 Aligned_cols=93 Identities=10% Similarity=0.103 Sum_probs=82.7
Q ss_pred cChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 29 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.+.+++.+.+.++.+.+|++|+++||+.|+.+.+.+.+++++++++.|+.||.+ |+|.++||+++|++|+.+
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 456788887765546799999999999999999999999999889999999987 999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHhhCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.++.|. ++.++...+.++...
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcCC
Confidence 999998 788888888776654
No 51
>KOG0190|consensus
Probab=99.82 E-value=7.2e-20 Score=132.43 Aligned_cols=109 Identities=22% Similarity=0.426 Sum_probs=96.6
Q ss_pred cccceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCHhHHHhCCCCccc
Q psy6819 22 KFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNAELVHTFEVKAVP 97 (135)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~~~~~~~~v~~~P 97 (135)
....+...+.++|...+.. +..++|.||||||++|+.+.|.+++.+.. .+.+.+++||+..+..+|.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~-~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETING-HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHhcc-CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4567777788999986655 45799999999999999999999988876 458999999999999999999999999
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
|+-+|+||+....+.|.++.+.+..|+++...+.
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccCCC
Confidence 9999999998778999999999999999876554
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.82 E-value=1.1e-18 Score=128.51 Aligned_cols=105 Identities=26% Similarity=0.422 Sum_probs=91.5
Q ss_pred ceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCHhHHHhCCCCccceEE
Q psy6819 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 100 (135)
.+...+.++|...+.+ +++++|.||++||++|+.+.|.+.++++. ..++.++.||++.+..++++|+|.++||++
T Consensus 33 ~v~~l~~~~f~~~i~~-~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 33 HVTVLTDSTFDKFITE-NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CcEEcchhhHHHHHhc-CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 3455577888886654 56899999999999999999999988755 457999999999999999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 101 AVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 101 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
+|++|+.+ ++.|..+.+.+.+|+.+.+.+.
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCC
Confidence 99999877 8899999999999999987654
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.81 E-value=6.6e-19 Score=128.85 Aligned_cols=105 Identities=22% Similarity=0.427 Sum_probs=91.7
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
+...+.++|...+.+ +++++|.||++||++|+.+.|.+.++++. ..++.|+.||++.+..++++|+|.++||+++
T Consensus 3 v~~l~~~~~~~~i~~-~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 3 VLVLTKDNFDDFIKS-HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred ceECCHHHHHHHHhc-CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 345577888876654 56899999999999999999999988776 3459999999999999999999999999999
Q ss_pred EeCCeE-EEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 102 VKNGLV-IDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 102 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
|++|+. +..+.|..+.+.+.+|+.+.+...
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 999987 788999999999999999887643
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=9.2e-19 Score=106.06 Aligned_cols=81 Identities=23% Similarity=0.470 Sum_probs=70.2
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCC--CCHhHHHhCCCCccceEE
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVE--KNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~ 100 (135)
...+.++|...+.+++++++|.||++||++|+.+.|.|+++++. .+.+.|+.+|++ .++.++++|+|+++||++
T Consensus 4 ~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 4 IVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 44577899998888788999999999999999999999999886 235899999975 467899999999999999
Q ss_pred EEeCCeE
Q psy6819 101 AVKNGLV 107 (135)
Q Consensus 101 ~~~~g~~ 107 (135)
+|++|..
T Consensus 84 lf~~~~~ 90 (114)
T cd02992 84 YFPPFSK 90 (114)
T ss_pred EECCCCc
Confidence 9987763
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=1.1e-18 Score=128.40 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=92.1
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc---CCCcEEEEEeCCCCHhHHHhCCCCccceEEEE
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN---SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 102 (135)
+...+.++|.+.+.+.+++++|.||++||++|+.+.|.++++++. .+.+.++.+|++.+...++.|+++++||+++|
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~ 438 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFV 438 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEE
Confidence 444567889988888889999999999999999999999999877 24689999999999999999999999999999
Q ss_pred eCCeEE-EEEecCCCHHHHHHHHHhhCCC
Q psy6819 103 KNGLVI-DKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 103 ~~g~~~-~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
++|+.+ .++.|..+.+.+.++|++....
T Consensus 439 ~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 439 KAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred ECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 766544 4789999999999999998764
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.78 E-value=4.7e-18 Score=123.28 Aligned_cols=104 Identities=13% Similarity=0.298 Sum_probs=85.9
Q ss_pred cceEecChhHHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC-CCHhHHH-hCCCCccc
Q psy6819 24 KSYIIENNEQFIKHVM--NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE-KNAELVH-TFEVKAVP 97 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~-~~~~~~~-~~~v~~~P 97 (135)
..+...+.++|.+.+. +.+++++|.||++||++|+.+.|.++++++. ..++.|+.+|++ .+..+++ .|+|.++|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 3555668888888764 5578999999999999999999999999988 446999999999 7788886 69999999
Q ss_pred eEEEEeCCeE-EEEEe-cCCCHHHHHHHHHhh
Q psy6819 98 AVLAVKNGLV-IDKFI-GLIENEMIENMVSKL 127 (135)
Q Consensus 98 t~~~~~~g~~-~~~~~-g~~~~~~l~~~i~~~ 127 (135)
|+++|++|.. ...+. |..+.+.|..||..+
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999976642 23454 568999999999865
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.78 E-value=4.9e-18 Score=123.26 Aligned_cols=104 Identities=12% Similarity=0.230 Sum_probs=84.8
Q ss_pred cceEecChhHHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-C-CCcEEEEEeCCCCH-hH-HHhCCCCccc
Q psy6819 24 KSYIIENNEQFIKHVM--NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S-DSIDLAIIDVEKNA-EL-VHTFEVKAVP 97 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~-~~v~~~~vd~~~~~-~~-~~~~~v~~~P 97 (135)
+.+...+.++|...+. ..+++++|.||++||++|+.+.|.+++++++ . .++.|+.||++.+. .+ ++.|+|.++|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 4566678889998774 4578999999999999999999999999988 3 35899999999764 44 4789999999
Q ss_pred eEEEEeCCe-EEEEEe-cCCCHHHHHHHHHhh
Q psy6819 98 AVLAVKNGL-VIDKFI-GLIENEMIENMVSKL 127 (135)
Q Consensus 98 t~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~~ 127 (135)
|+++|++|. ....+. |..+.+.|..||..+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999998775 223454 578999999998754
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.78 E-value=7.7e-18 Score=96.15 Aligned_cols=80 Identities=26% Similarity=0.442 Sum_probs=71.3
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHH
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 123 (135)
.|..||++||++|+.+.+.+++++++ ...+.+..||.+.+++++++|++.++|++++ +|+. ++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 47789999999999999999999887 5679999999999999999999999999986 7763 67898899999999
Q ss_pred HHhhC
Q psy6819 124 VSKLL 128 (135)
Q Consensus 124 i~~~~ 128 (135)
+++.+
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 88753
No 59
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=6.9e-18 Score=101.53 Aligned_cols=98 Identities=13% Similarity=0.194 Sum_probs=80.2
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEc--CCCh---hhhhhhHHHHHHHhcCCCcEEEEEeCC-----CCHhHHHhCCCC-
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHA--EWCE---PCHLLTPQLKKMLGNSDSIDLAIIDVE-----KNAELVHTFEVK- 94 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~--~~C~---~C~~~~~~~~~l~~~~~~v~~~~vd~~-----~~~~~~~~~~v~- 94 (135)
....+.++|.+.+.+ ++.++|.||+ |||+ +|+.+.|.+.+.+. .+.++.||++ .+..+|++|+|+
T Consensus 3 ~v~L~~~nF~~~v~~-~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLDTVTFYKVIPK-FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECChhhHHHHHhc-CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCc
Confidence 345688899986654 5679999999 9999 88888877766543 4999999994 567899999999
Q ss_pred -ccceEEEEeCCe--EEEEEecC-CCHHHHHHHHHhh
Q psy6819 95 -AVPAVLAVKNGL--VIDKFIGL-IENEMIENMVSKL 127 (135)
Q Consensus 95 -~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 127 (135)
++||+.+|++|. ....+.|. ++.+.|.+||.+.
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999885 33468896 9999999999764
No 60
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.76 E-value=1.5e-18 Score=105.43 Aligned_cols=100 Identities=18% Similarity=0.337 Sum_probs=74.8
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCH-hHHHhCCCCc--cceEEEE-eC
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNA-ELVHTFEVKA--VPAVLAV-KN 104 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~-~~ 104 (135)
+.++..+.....+++++|.||++||++|+.+.|.+.+.... .....|+.+|++.+. ...+.|++.+ +||++++ .+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 44555555666788999999999999999999999887664 344567778877664 4567899986 9999999 69
Q ss_pred CeEEEE---EecCCCHHHHHHHHHhhCC
Q psy6819 105 GLVIDK---FIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 105 g~~~~~---~~g~~~~~~l~~~i~~~~~ 129 (135)
|+.+.+ ..|..+...+...++.+++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 999874 4455566666666655544
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.76 E-value=1.7e-17 Score=100.57 Aligned_cols=95 Identities=19% Similarity=0.415 Sum_probs=76.0
Q ss_pred EecChhHHHHHHhcC-CCcEEEEEEc-------CCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCC-------CHhHHHh
Q psy6819 27 IIENNEQFIKHVMNN-PVPVIVNFHA-------EWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEK-------NAELVHT 90 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~vv~f~~-------~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~-------~~~~~~~ 90 (135)
.+.+.++|.+.+... +++++|.||| +||++|+.+.|.+++++++ .++++|+.||++. +..+.+.
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 456778888877754 6799999999 9999999999999999988 4479999999976 4589999
Q ss_pred CCCC-ccceEEEEeCCeEEEEEecC--CCHHHHHHHH
Q psy6819 91 FEVK-AVPAVLAVKNGLVIDKFIGL--IENEMIENMV 124 (135)
Q Consensus 91 ~~v~-~~Pt~~~~~~g~~~~~~~g~--~~~~~l~~~i 124 (135)
++|. ++||+++|++|+.+ .|. .+...+..++
T Consensus 85 ~~I~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred cCcccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 9998 99999999877543 333 2455554443
No 62
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.76 E-value=7.8e-17 Score=98.73 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=100.9
Q ss_pred CchhHHHHHHHHHHHhhhhhhcccceEecChhHHHHHHhcCCCcEEEEEEcC--CChhhhhhhHHHHHHHhc-C-CCcEE
Q psy6819 1 MSVKQFQSTLFKRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAE--WCEPCHLLTPQLKKMLGN-S-DSIDL 76 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~~~~l~~~-~-~~v~~ 76 (135)
|+....++.|.+|... ..+...+..++...+...+ ..+++|-++ .++.+....=.+++++++ . .++++
T Consensus 1 ~~~~~~~~~l~~rl~~-------~g~~~~~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~ 72 (132)
T PRK11509 1 MSNDTPFDALWQRMLA-------RGWTPVSESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQV 72 (132)
T ss_pred CCCCCccHHHHHHHHH-------cCCCccccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEE
Confidence 5666778888888655 1333344455555554433 466666653 578888888899999999 3 35999
Q ss_pred EEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCCCCC
Q psy6819 77 AIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134 (135)
Q Consensus 77 ~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 134 (135)
++||+|.++.++.+|+|.++||+++|++|+.+.+..|..+.+++.++|++++....++
T Consensus 73 akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~~ 130 (132)
T PRK11509 73 AIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 (132)
T ss_pred EEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCcc
Confidence 9999999999999999999999999999999999999999999999999999877653
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.75 E-value=1.3e-17 Score=99.11 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCC--ccceEEEEeC--CeEEEEEecCCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVK--AVPAVLAVKN--GLVIDKFIGLIE 116 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~~~ 116 (135)
++++++.|+++||+.|+.+.+.+++++++ .+.+.|+.+|++.++.+++.|++. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 57899999999999999999999999999 678999999999999999999999 9999999977 766555556668
Q ss_pred HHHHHHHHHhhC
Q psy6819 117 NEMIENMVSKLL 128 (135)
Q Consensus 117 ~~~l~~~i~~~~ 128 (135)
.+.+.+|+.+++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 64
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.74 E-value=1.9e-17 Score=99.85 Aligned_cols=85 Identities=22% Similarity=0.550 Sum_probs=66.6
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHH---HHhc-CCCcEEEEEeCCCC--------------------HhHHHhCCCCc
Q psy6819 40 NNPVPVIVNFHAEWCEPCHLLTPQLKK---MLGN-SDSIDLAIIDVEKN--------------------AELVHTFEVKA 95 (135)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~---l~~~-~~~v~~~~vd~~~~--------------------~~~~~~~~v~~ 95 (135)
.++++++++|+++||++|+.+.+.+.+ +.+. ..++.++.++++.. .++++.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 457899999999999999999988875 4444 55788999988753 35899999999
Q ss_pred cceEEEE-eCCeEEEEEecCCCHHHHHHHH
Q psy6819 96 VPAVLAV-KNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 96 ~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 124 (135)
+||++++ .+|+.+.++.|..+.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 6899999999999999998764
No 65
>KOG4277|consensus
Probab=99.73 E-value=3.3e-17 Score=111.54 Aligned_cols=96 Identities=20% Similarity=0.367 Sum_probs=81.0
Q ss_pred hHHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 32 EQFIKHVM--NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 32 ~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
+++.+... .++..|+|.||+|||++|+++.|.|.++.-+ +..+++.++|+...+.++..|+|+++||+.+|++|
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC
Confidence 34444444 3366899999999999999999999998655 66799999999999999999999999999999988
Q ss_pred eEEEEEecCCCHHHHHHHHHhhC
Q psy6819 106 LVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
..+. +.|.++.+.+.+|-.+..
T Consensus 111 ~a~d-YRG~R~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 111 HAID-YRGGREKDAIIEFAHRCA 132 (468)
T ss_pred eeee-cCCCccHHHHHHHHHhcc
Confidence 8765 778888888888877654
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=1.2e-16 Score=106.66 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=74.2
Q ss_pred CcEEEEEEc---CCChhhhhhhHHHHHHHhcCCCcE--EEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEE-EEecCCC
Q psy6819 43 VPVIVNFHA---EWCEPCHLLTPQLKKMLGNSDSID--LAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVID-KFIGLIE 116 (135)
Q Consensus 43 ~~~vv~f~~---~~C~~C~~~~~~~~~l~~~~~~v~--~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~~~ 116 (135)
...++.|++ +||++|+.+.|.++++++..+++. ++.+|.+.+++++++|+|.++||+++|++|+.+. ++.|..+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 345777888 999999999999999998855554 6666666999999999999999999999999874 8999999
Q ss_pred HHHHHHHHHhhC
Q psy6819 117 NEMIENMVSKLL 128 (135)
Q Consensus 117 ~~~l~~~i~~~~ 128 (135)
.+++.++|+.++
T Consensus 100 ~~~l~~~i~~~~ 111 (215)
T TIGR02187 100 GYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 67
>KOG0190|consensus
Probab=99.72 E-value=3e-17 Score=118.98 Aligned_cols=102 Identities=22% Similarity=0.384 Sum_probs=85.4
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc---CCCcEEEEEeCCCCHhHHHhCCCCccceEEEE
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN---SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 102 (135)
+.+.-..+|++.+.+.++-++|.||||||++|+++.|.+++|++. .+++.++++|...|. ...+.+.++||++++
T Consensus 368 VkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~ 445 (493)
T KOG0190|consen 368 VKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFF 445 (493)
T ss_pred eEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEe
Confidence 444556789998999999999999999999999999999999998 568999999998886 445567779999999
Q ss_pred eCCe--EEEEEecCCCHHHHHHHHHhhCC
Q psy6819 103 KNGL--VIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 103 ~~g~--~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+.|. ..-.+.|.++.+.+..++.+.-.
T Consensus 446 pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 446 PAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 6665 23467899999999999987543
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.71 E-value=2e-16 Score=105.62 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=74.2
Q ss_pred HhcCCCc-EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCC
Q psy6819 38 VMNNPVP-VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE 116 (135)
Q Consensus 38 ~~~~~~~-~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 116 (135)
+...+++ .++.||++||++|+.+.+.+++++...+++.+..+|.+.+++++++|+|.++||++++.+|+. +.|..+
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~ 204 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYP 204 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCC
Confidence 3334444 455599999999999999999998887789999999999999999999999999999888863 789889
Q ss_pred HHHHHHHHHh
Q psy6819 117 NEMIENMVSK 126 (135)
Q Consensus 117 ~~~l~~~i~~ 126 (135)
.+++.+++.+
T Consensus 205 ~~~l~~~l~~ 214 (215)
T TIGR02187 205 EEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 69
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.71 E-value=1.9e-16 Score=96.87 Aligned_cols=92 Identities=9% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHhc-CCCcEEEEEeCCCCHhHHH--------hCCCCccceEEEE-
Q psy6819 36 KHVMNNPVPVIVNFHAEWCEPCHLLTPQ-L--KKMLGN-SDSIDLAIIDVEKNAELVH--------TFEVKAVPAVLAV- 102 (135)
Q Consensus 36 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~-~~~v~~~~vd~~~~~~~~~--------~~~v~~~Pt~~~~- 102 (135)
+...+.+|+++|+|+++||+.|+.+.+. + .++.+. ..++.++.+|.++.+++.+ .|++.++|+++++
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~ 88 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLT 88 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 3455668899999999999999999874 3 356655 6689999999998887765 3589999999999
Q ss_pred eCCeEEEEEecC-----CCHHHHHHHHHhh
Q psy6819 103 KNGLVIDKFIGL-----IENEMIENMVSKL 127 (135)
Q Consensus 103 ~~g~~~~~~~g~-----~~~~~l~~~i~~~ 127 (135)
.+|+++....+. .+...+..+++++
T Consensus 89 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 89 PDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 889999766554 3344566665554
No 70
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.71 E-value=2.1e-16 Score=118.34 Aligned_cols=104 Identities=18% Similarity=0.360 Sum_probs=84.8
Q ss_pred ceEecChhHHHHHHh---cCCCcEEEEEEcCCChhhhhhhHHH---HHHHhcCCCcEEEEEeCCCC----HhHHHhCCCC
Q psy6819 25 SYIIENNEQFIKHVM---NNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGNSDSIDLAIIDVEKN----AELVHTFEVK 94 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~~v~~~~vd~~~~----~~~~~~~~v~ 94 (135)
...+.+.+++++.+. ..+|+++|+||++||++|+.+.+.+ +++.+..+++.++++|++++ .+++++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 345557778877665 3468999999999999999998865 56666655799999999753 6789999999
Q ss_pred ccceEEEE-eCCeEE--EEEecCCCHHHHHHHHHhhC
Q psy6819 95 AVPAVLAV-KNGLVI--DKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 95 ~~Pt~~~~-~~g~~~--~~~~g~~~~~~l~~~i~~~~ 128 (135)
++|++++| ++|+.+ .++.|..+.+++.+++++..
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99999999 589884 68889999999999998753
No 71
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=2e-16 Score=115.82 Aligned_cols=104 Identities=23% Similarity=0.368 Sum_probs=87.2
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CC---CcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SD---SIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
+...+..+|.+.+.+.+++++|.||++||++|+.+.|.++++++. .+ .+.|+.+|++.+. +.. ++++++|++++
T Consensus 348 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 348 VKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKF 425 (462)
T ss_pred cEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEE
Confidence 344567888888877788999999999999999999999999988 43 6999999999875 333 99999999999
Q ss_pred EeCCeEE--EEEecCCCHHHHHHHHHhhCCCC
Q psy6819 102 VKNGLVI--DKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 102 ~~~g~~~--~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
|++|... .++.|..+.+.+.++|.+....+
T Consensus 426 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 426 VPAGKKSEPVPYDGDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred EeCCCCcCceEecCcCCHHHHHHHHHhcCCCC
Confidence 9777643 56789899999999998876543
No 72
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.69 E-value=5.4e-16 Score=101.39 Aligned_cols=87 Identities=20% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH-----------------------hHHHhCCCCccc
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA-----------------------ELVHTFEVKAVP 97 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v~~~P 97 (135)
.+++++|+||++||++|+...|.+.++.+. ++.++.|+.+++. .+.+.|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 478999999999999999999999998753 6888888865432 245578999999
Q ss_pred eEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 98 AVLAV-KNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 98 t~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+.+++ ++|+++.++.|..+.+++++.|+.+++
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 88777 899999999999999999998888764
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.69 E-value=3e-16 Score=115.37 Aligned_cols=87 Identities=18% Similarity=0.374 Sum_probs=74.9
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEe----------------------------CCCCHhHHH
Q psy6819 40 NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIID----------------------------VEKNAELVH 89 (135)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd----------------------------~~~~~~~~~ 89 (135)
+.++++||.|||+||++|+...|.++++.++ .+++.++.|+ .|.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 3578999999999999999999999999887 3467776654 344567889
Q ss_pred hCCCCccceEEEE-eCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 90 TFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 90 ~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
.|+|.++|+++++ ++|+++.++.|..+.+++.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999777 899999999999999999999984
No 74
>PHA02125 thioredoxin-like protein
Probab=99.68 E-value=1.1e-15 Score=86.00 Aligned_cols=70 Identities=24% Similarity=0.581 Sum_probs=59.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecC-CCHHHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGL-IENEMIENM 123 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 123 (135)
++.||++||++|+.+.|.++++. +.++.||.+.+++++++|+|.++||++ +|+.+.+..|. .+..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998763 568999999999999999999999987 68888888886 233555554
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.67 E-value=1.3e-15 Score=98.58 Aligned_cols=87 Identities=24% Similarity=0.492 Sum_probs=73.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC-----------------------CCHhHHHhCCCCccc
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE-----------------------KNAELVHTFEVKAVP 97 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-----------------------~~~~~~~~~~v~~~P 97 (135)
.+++++|+||++||+.|+...|.++++.+. ++.++.|+.+ .+..+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 468999999999999999999999988754 4777777653 233467788999999
Q ss_pred eEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 98 AVLAV-KNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 98 t~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+++++ ++|+++.++.|..+.+++.+++.+++.
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 87777 899999999999999999999998874
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.67 E-value=1.3e-15 Score=96.44 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=68.5
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC------------HhHH-HhC---CCCccceEEEE-eC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN------------AELV-HTF---EVKAVPAVLAV-KN 104 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~------------~~~~-~~~---~v~~~Pt~~~~-~~ 104 (135)
++..+|+||++||++|+...|.++++.+++ ++.++.|+.+.. .... ..| ++.++|+++++ ++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 556899999999999999999999998885 366777776642 2233 445 78999999999 66
Q ss_pred CeE-EEEEecCCCHHHHHHHHHhhC
Q psy6819 105 GLV-IDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 105 g~~-~~~~~g~~~~~~l~~~i~~~~ 128 (135)
|.. .....|..+.+++++.|.+++
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHhC
Confidence 664 557899999999999888764
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.66 E-value=2e-15 Score=103.74 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=74.2
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC-----------CHhHHHhCCCCccceEEEEeC-Ce-EE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK-----------NAELVHTFEVKAVPAVLAVKN-GL-VI 108 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~-~~ 108 (135)
++++||+||++||++|+.+.|.+++++++++ +.++.|++|. +..++++|+|.++|+++++.. |+ ..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 6789999999999999999999999998863 7787788765 356889999999999999953 54 44
Q ss_pred EEEecCCCHHHHHHHHHhhCCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
....|..+.++|.+.+.......
T Consensus 245 ~v~~G~~s~~eL~~~i~~~a~~~ 267 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLAAHPA 267 (271)
T ss_pred EEEeCCCCHHHHHHHHHHHhccc
Confidence 45669999999999998876643
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.66 E-value=1.8e-15 Score=93.20 Aligned_cols=78 Identities=22% Similarity=0.471 Sum_probs=65.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeC-----------------------CCCHhHHHhCCCCccce
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-----------------------EKNAELVHTFEVKAVPA 98 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~v~~~Pt 98 (135)
+++++|+||++||+.|+...|.++++.+.. ++.++.|+. |.+..+++.|++.++|+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 678999999999999999999999998775 377777764 34456788899999997
Q ss_pred EEEE-eCCeEEEEEecCCCHHHH
Q psy6819 99 VLAV-KNGLVIDKFIGLIENEMI 120 (135)
Q Consensus 99 ~~~~-~~g~~~~~~~g~~~~~~l 120 (135)
.+++ ++|+++.++.|..+.+.+
T Consensus 104 ~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred EEEECCCceEEEEEeccCChHhc
Confidence 7777 899999999999887654
No 79
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.65 E-value=2.2e-15 Score=84.91 Aligned_cols=72 Identities=17% Similarity=0.355 Sum_probs=58.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecC-CCHHHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGL-IENEMIENM 123 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 123 (135)
.|.||++||++|+.+.|.+++++++ ...+.++.+| +...+.+|++.++|++++ +|+.+ +.|. .+.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 3789999999999999999999998 5668887777 344578899999999998 99877 6664 355777766
Q ss_pred H
Q psy6819 124 V 124 (135)
Q Consensus 124 i 124 (135)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 80
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.63 E-value=2.7e-15 Score=82.50 Aligned_cols=62 Identities=24% Similarity=0.371 Sum_probs=56.1
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.+..|+++||++|+.+.+.++++++..+++.+..+|.+++++++++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 478899999999999999999998777789999999999999999999999999876 67654
No 81
>KOG0191|consensus
Probab=99.63 E-value=1.9e-15 Score=108.72 Aligned_cols=102 Identities=20% Similarity=0.477 Sum_probs=87.9
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
....+.......+++++|.||++||++|+.+.|.+.++++. .+.+.++.||++.+..+|+.|+|.++||+.+|..|...
T Consensus 35 ~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~ 114 (383)
T KOG0191|consen 35 TLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKP 114 (383)
T ss_pred hccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCce
Confidence 35566666667778999999999999999999999999888 66799999999999999999999999999999888555
Q ss_pred EEEecCCCHHHHHHHHHhhCCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
..+.|..+.+.+..++...++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred eeccCcccHHHHHHHHHHhhccc
Confidence 56778888999998888766543
No 82
>KOG0912|consensus
Probab=99.63 E-value=1.4e-15 Score=103.49 Aligned_cols=97 Identities=20% Similarity=0.468 Sum_probs=83.7
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc------CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN------SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~------~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
++++. +.+....++|.|||+||+.++.+.|.+++.++. .+.+.++.|||+.+..++.+|.|..+||+-+|.||
T Consensus 4 ~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 4 ENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred ccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence 44554 334466899999999999999999999887654 46799999999999999999999999999999999
Q ss_pred eEEE-EEecCCCHHHHHHHHHhhCC
Q psy6819 106 LVID-KFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 106 ~~~~-~~~g~~~~~~l~~~i~~~~~ 129 (135)
.++. .+.|.++.+.|.++|++.++
T Consensus 83 ~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 83 EMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred chhhhhhccchhHHHHHHHHHHHhc
Confidence 9988 67799999999999987654
No 83
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.62 E-value=7.3e-15 Score=85.05 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHH
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 121 (135)
+...+..|+++||++|....+.++++++.++++++..+|.+..++++++|+|.++|++++ +|+.+. .|..+.+++.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~~ 87 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEIL 87 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHHh
Confidence 345788899999999999999999999888899999999999999999999999999975 898766 4765666543
No 84
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.62 E-value=1.1e-14 Score=88.12 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=80.2
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHhc-CCCcEEEEEeCC--CCHhHHHhCCCCccceEEEE-
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQ-L--KKMLGN-SDSIDLAIIDVE--KNAELVHTFEVKAVPAVLAV- 102 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~-~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~- 102 (135)
+.++..+.....+|+++|+|+++||++|+.+... | +.+.+. ..+..++.+|.+ +...+++.|++.++|+++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 3345555556668999999999999999999764 3 344444 557888888886 35578999999999999999
Q ss_pred e-CCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 103 K-NGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 103 ~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
. +|+.+.+..|..+++++.+.+++.+.
T Consensus 85 ~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5 79999999999999999998887643
No 85
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.61 E-value=2e-14 Score=92.85 Aligned_cols=87 Identities=21% Similarity=0.596 Sum_probs=75.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC----------------------CHhHHHhCCCCcc
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK----------------------NAELVHTFEVKAV 96 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~----------------------~~~~~~~~~v~~~ 96 (135)
.+++++|+||++||+.|+...+.+.++.++ ..++.++.|+.+. +..+.+.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 367899999999999999999999999987 3458899998753 3467899999999
Q ss_pred ceEEEE-eCCeEEEEEecCCCHHHHHHHHHhh
Q psy6819 97 PAVLAV-KNGLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 97 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
|+++++ ++|+.+....|..+.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999888 7999998999999999999988764
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.56 E-value=3.5e-14 Score=89.07 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=57.5
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc---------CCCcEEEEEeCCCCH-------------------------hH
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN---------SDSIDLAIIDVEKNA-------------------------EL 87 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---------~~~v~~~~vd~~~~~-------------------------~~ 87 (135)
+++++|+|||+||++|+...|.+.++.++ ..++.++.|+.+.+. .+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 68999999999999999999999987653 125889999876421 46
Q ss_pred HHhCCCCccceEEEE-eCCeEEEE
Q psy6819 88 VHTFEVKAVPAVLAV-KNGLVIDK 110 (135)
Q Consensus 88 ~~~~~v~~~Pt~~~~-~~g~~~~~ 110 (135)
+++|++.++|+++++ ++|+++.+
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEee
Confidence 788999999999999 78998864
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.56 E-value=3.2e-14 Score=88.03 Aligned_cols=69 Identities=25% Similarity=0.652 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc-C---CCcEEEEEeCCCC------------------------HhHHHhCCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S---DSIDLAIIDVEKN------------------------AELVHTFEV 93 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~---~~v~~~~vd~~~~------------------------~~~~~~~~v 93 (135)
+++++|+||++||+.|+...|.+.++.++ . +++.++.|+.+.. ..+++.|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 67899999999999999999999888766 2 3688888887644 357789999
Q ss_pred CccceEEEE-eCCeEEEE
Q psy6819 94 KAVPAVLAV-KNGLVIDK 110 (135)
Q Consensus 94 ~~~Pt~~~~-~~g~~~~~ 110 (135)
.++|+++++ ++|+++.+
T Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 98 EGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCEEEEECCCCCEEcc
Confidence 999999999 68988764
No 88
>KOG0191|consensus
Probab=99.56 E-value=7.3e-14 Score=100.61 Aligned_cols=106 Identities=24% Similarity=0.426 Sum_probs=93.7
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc---CCCcEEEEEeCCCCHhHHHhCCCCccceEEEE
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN---SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 102 (135)
+...+.+++...+...+..++|.||+|||++|+.+.|.|++++.. ...+.+..+|++.+..++++++|+++|++.+|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 666677888887888888899999999999999999999999986 37899999999999999999999999999999
Q ss_pred eCCeE-EEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 103 KNGLV-IDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 103 ~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
+.|.. ...+.|.++.+.+.+|+.......
T Consensus 226 ~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 77777 667888899999999999877664
No 89
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.55 E-value=1.1e-13 Score=89.38 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=70.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-------------HhHHHhCCC--CccceEEEE-eCCeEE-
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-------------AELVHTFEV--KAVPAVLAV-KNGLVI- 108 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 108 (135)
+|.||++||++|+...|.+.++.+++ ++.++.|+++.. ..+.+.|++ .++|+.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 88899999999999999999999886 378888876633 235678885 699999999 899885
Q ss_pred EEEecCCCHHHHHHHHHhhCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
..+.|..+.+++.+.|..+++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 5799999999999999888754
No 90
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.55 E-value=4e-14 Score=87.80 Aligned_cols=69 Identities=23% Similarity=0.608 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc-C---CCcEEEEEeCCCCH-------------------------hHHHhCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S---DSIDLAIIDVEKNA-------------------------ELVHTFE 92 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~---~~v~~~~vd~~~~~-------------------------~~~~~~~ 92 (135)
+++++|+||++||+.|+...|.++++.+. . .++.++.|+.+... .+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 68999999999999999999999988776 2 36888888877542 3567799
Q ss_pred CCccceEEEE-eCCeEEEE
Q psy6819 93 VKAVPAVLAV-KNGLVIDK 110 (135)
Q Consensus 93 v~~~Pt~~~~-~~g~~~~~ 110 (135)
|.++|+++++ ++|+++.+
T Consensus 97 v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 97 VEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCEEEEECCCCCEEch
Confidence 9999999999 68887754
No 91
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.54 E-value=6.8e-14 Score=81.92 Aligned_cols=66 Identities=24% Similarity=0.751 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc-C--CCcEEEEEeCCCC-------------------------HhHHHhCCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-S--DSIDLAIIDVEKN-------------------------AELVHTFEV 93 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~--~~v~~~~vd~~~~-------------------------~~~~~~~~v 93 (135)
+|+++|+||++||+.|+...|.+.++.+. . +++.++.|+.|.+ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 57899999999999999999999999888 4 6999999998753 246888999
Q ss_pred CccceEEEE-eCCeE
Q psy6819 94 KAVPAVLAV-KNGLV 107 (135)
Q Consensus 94 ~~~Pt~~~~-~~g~~ 107 (135)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999 77763
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.53 E-value=9e-14 Score=110.36 Aligned_cols=89 Identities=19% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeC---------------------------CCCHhHHHhC
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDV---------------------------EKNAELVHTF 91 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~---------------------------~~~~~~~~~~ 91 (135)
.++++||.||++||++|+...|.++++.++ ..++.++.|.. |....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 368999999999999999999999999988 33477777742 2244577899
Q ss_pred CCCccceEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 92 EVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 92 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+|.++|+++++ ++|+++.+..|....+++.++++..+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 899999999999999999999988754
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.53 E-value=1.1e-13 Score=82.95 Aligned_cols=72 Identities=26% Similarity=0.704 Sum_probs=64.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC-----------------------HhHHHhCCCCcc
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN-----------------------AELVHTFEVKAV 96 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~-----------------------~~~~~~~~v~~~ 96 (135)
+++++|.||++||+.|+...+.+.++.++ .+++.++.|+++.. ..+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 67899999999999999999999999888 37899999999986 678999999999
Q ss_pred ceEEEE-eCCeEEEEEec
Q psy6819 97 PAVLAV-KNGLVIDKFIG 113 (135)
Q Consensus 97 Pt~~~~-~~g~~~~~~~g 113 (135)
|+++++ ++|+++.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999999 78999887765
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.53 E-value=1.7e-13 Score=83.82 Aligned_cols=79 Identities=19% Similarity=0.441 Sum_probs=63.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeC-----------------------CCCHhHHHhCCCCccce
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-----------------------EKNAELVHTFEVKAVPA 98 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~v~~~Pt 98 (135)
+++++|+||++||+.|+.+.|.+.++.+. +.++.|.. +.+..++++|+|.++|+
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAAD---YPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhh---CCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 57899999999999999999999988766 23333332 34457899999999999
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHH
Q psy6819 99 VLAVKNGLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 99 ~~~~~~g~~~~~~~g~~~~~~l~~~ 123 (135)
++++.+|+++.+..|..+.+++.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999444488899999999888654
No 95
>smart00594 UAS UAS domain.
Probab=99.51 E-value=5.8e-13 Score=81.54 Aligned_cols=101 Identities=10% Similarity=0.132 Sum_probs=78.7
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEeCCC--CHhHHHhCCCCccc
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIIDVEK--NAELVHTFEVKAVP 97 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd~~~--~~~~~~~~~v~~~P 97 (135)
+.....+.++..+.....+|+++|+|+++||+.|+.+...+ .++.+. ..++.++.+|++. ...+++.|+++++|
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P 88 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFP 88 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCC
Confidence 34445566777776777789999999999999999987654 344444 5578888888764 45689999999999
Q ss_pred eEEEE-eCC-----eEEEEEecCCCHHHHHHHH
Q psy6819 98 AVLAV-KNG-----LVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 98 t~~~~-~~g-----~~~~~~~g~~~~~~l~~~i 124 (135)
+++++ .+| +.+.++.|..+.+++...+
T Consensus 89 ~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 89 YVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999 665 4577889999999998765
No 96
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.50 E-value=1.2e-13 Score=84.65 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=60.8
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEE-eC
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV-KN 104 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~ 104 (135)
+.++..+.....+|+++|.|+++||++|+.+...+ .++.+. ..++..+.++.+....-....+ .++||++|+ .+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 56666666777789999999999999999998765 344444 4456655666553211111233 689999999 88
Q ss_pred CeEEEEEecCCC
Q psy6819 105 GLVIDKFIGLIE 116 (135)
Q Consensus 105 g~~~~~~~g~~~ 116 (135)
|+.+.++.|..+
T Consensus 90 g~vi~~i~Gy~~ 101 (130)
T cd02960 90 LTVRADITGRYS 101 (130)
T ss_pred CCCccccccccc
Confidence 999988887654
No 97
>KOG1731|consensus
Probab=99.49 E-value=1.7e-14 Score=105.25 Aligned_cols=105 Identities=20% Similarity=0.365 Sum_probs=82.4
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCC--CCHhHHHhCCCCccc
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVE--KNAELVHTFEVKAVP 97 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~--~~~~~~~~~~v~~~P 97 (135)
..+...+.+.|...+....+..+|.||++||++|+.+.|.+.++++. .+-+.++.|||. .|..+|+.|+|+++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 55666788999998888777899999999999999999999999987 556899999986 577899999999999
Q ss_pred eEEEEeCC-eE---EEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNG-LV---IDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g-~~---~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++-+|+.+ +. -..+.|.....++...+.+.+
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 99998322 11 123445555666666665543
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.48 E-value=4.6e-13 Score=82.40 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=61.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC---------------------------CCHhHHHhC
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE---------------------------KNAELVHTF 91 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~---------------------------~~~~~~~~~ 91 (135)
.++++||+||+.||+.|....|.++++.++ ..++.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 368999999999999999999999999988 356888888541 123467789
Q ss_pred CCCccceEEEE-eCCeEEEEEecC
Q psy6819 92 EVKAVPAVLAV-KNGLVIDKFIGL 114 (135)
Q Consensus 92 ~v~~~Pt~~~~-~~g~~~~~~~g~ 114 (135)
++.++|+++++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 789999988875
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.48 E-value=4.5e-13 Score=80.85 Aligned_cols=69 Identities=22% Similarity=0.456 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCC--------------------CHhHHHhCCCCccceEE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEK--------------------NAELVHTFEVKAVPAVL 100 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~--------------------~~~~~~~~~v~~~Pt~~ 100 (135)
+++++|+||++||+.|+...|.++++.+. .+++.++.+.-+. +..+.++|++..+|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 68999999999999999999999998877 5567777663111 23467788899999998
Q ss_pred EE-eCCeEEEE
Q psy6819 101 AV-KNGLVIDK 110 (135)
Q Consensus 101 ~~-~~g~~~~~ 110 (135)
++ ++|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 88 68887653
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.48 E-value=8.1e-13 Score=83.14 Aligned_cols=76 Identities=26% Similarity=0.612 Sum_probs=65.3
Q ss_pred CCCcEEEEEEcC-CChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------CHhHHHhCCCC--
Q psy6819 41 NPVPVIVNFHAE-WCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------NAELVHTFEVK-- 94 (135)
Q Consensus 41 ~~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------~~~~~~~~~v~-- 94 (135)
.+++++|.||+. ||++|+...|.+.++.+. ..++.++.|..+. +..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 368899999999 999999999999999877 6678888887554 33578889988
Q ss_pred -------ccceEEEE-eCCeEEEEEecCCC
Q psy6819 95 -------AVPAVLAV-KNGLVIDKFIGLIE 116 (135)
Q Consensus 95 -------~~Pt~~~~-~~g~~~~~~~g~~~ 116 (135)
++|+++++ ++|+++++..|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99999888 99999999999876
No 101
>KOG1672|consensus
Probab=99.47 E-value=8.9e-13 Score=84.53 Aligned_cols=97 Identities=21% Similarity=0.370 Sum_probs=85.6
Q ss_pred hhhhcccceEec-ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCcc
Q psy6819 18 FLERKFKSYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAV 96 (135)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~ 96 (135)
|.......+... +..+|.+....+.+ +|++||-+.-..|+.+...++.+++.+-..+|++||++..|-++.+++|+.+
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVL 138 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVL 138 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEe
Confidence 455555555444 57888887777655 9999999999999999999999999988999999999999999999999999
Q ss_pred ceEEEEeCCeEEEEEecCC
Q psy6819 97 PAVLAVKNGLVIDKFIGLI 115 (135)
Q Consensus 97 Pt~~~~~~g~~~~~~~g~~ 115 (135)
|++++|++|+.+.++.|+.
T Consensus 139 P~v~l~k~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 139 PTVALFKNGKTVDYVVGFT 157 (211)
T ss_pred eeEEEEEcCEEEEEEeeHh
Confidence 9999999999999999874
No 102
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.45 E-value=2.2e-12 Score=88.29 Aligned_cols=103 Identities=22% Similarity=0.385 Sum_probs=81.1
Q ss_pred cceEecChhHHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 24 KSYIIENNEQFIKHVMNN--PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
..+.+.+.++|.+.+... +..+||+||.+.++.|..+...|..|+.+++.++|++|..+..+ +...|.+..+||+++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllv 204 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLV 204 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEEE
Confidence 455676778898877654 34689999999999999999999999999999999999988766 788999999999999
Q ss_pred EeCCeEEEEEecCC-------CHHHHHHHHHhh
Q psy6819 102 VKNGLVIDKFIGLI-------ENEMIENMVSKL 127 (135)
Q Consensus 102 ~~~g~~~~~~~g~~-------~~~~l~~~i~~~ 127 (135)
|++|..+..+.|.. +...|+.++.+.
T Consensus 205 Yk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 205 YKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999888752 356777777653
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.42 E-value=1.4e-12 Score=86.20 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC-------CCH----hHHHhCCC---------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE-------KNA----ELVHTFEV--------------- 93 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~-------~~~----~~~~~~~v--------------- 93 (135)
++++||.||++||+.|+...|.++++.++ ..++.++.|+++ .++ .+++++++
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~ 118 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENT 118 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCcc
Confidence 68999999999999999999999999888 456999999863 111 22333332
Q ss_pred ---------------------Cccc---eEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCCCCC
Q psy6819 94 ---------------------KAVP---AVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDK 132 (135)
Q Consensus 94 ---------------------~~~P---t~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 132 (135)
..+| +.+++ ++|+++.++.|..+.+++.+.|+.+++.+.
T Consensus 119 ~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~ 182 (199)
T PTZ00056 119 HELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVKD 182 (199)
T ss_pred CHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1122 45556 999999999999899999999998877654
No 104
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.41 E-value=3.9e-12 Score=83.44 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=63.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC--------------------CCHhHHHhCCCCccceEE
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE--------------------KNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~--------------------~~~~~~~~~~v~~~Pt~~ 100 (135)
.+++++|+||++||+.|+...|.+.++.+.. ++.++.|+.+ ...++++.|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4678999999999999999999999987662 3445554421 134678899999999988
Q ss_pred EE-eCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 101 AV-KNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 101 ~~-~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++ ++|+++.+.. ....+.+++.++.+-
T Consensus 152 lID~~G~I~~~g~-~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 152 LLDQDGKIRAKGL-TNTREHLESLLEADR 179 (189)
T ss_pred EECCCCeEEEccC-CCCHHHHHHHHHHHH
Confidence 87 7898887532 235677777776553
No 105
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.41 E-value=4.5e-12 Score=85.40 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-------C-H---hHH-HhCC---------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-------N-A---ELV-HTFE--------------- 92 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-------~-~---~~~-~~~~--------------- 92 (135)
++++||.||++||+.|....|.++++.++ ..++.++.|+++. . . .++ ++++
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~ 178 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPS 178 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcch
Confidence 68999999999999999999999999887 4569999998641 1 1 121 2221
Q ss_pred -------------------CCccceEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 93 -------------------VKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 93 -------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+...|+.+++ ++|+++.++.|..+.+++++.|+++++
T Consensus 179 ~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 179 TAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1235888888 999999999999999999999998874
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.40 E-value=4.8e-12 Score=82.13 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=65.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEE------EEEeCCC-----------------------------CHh
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDL------AIIDVEK-----------------------------NAE 86 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~------~~vd~~~-----------------------------~~~ 86 (135)
+|+.+|.|||.||+.|+...|.++++.+. ++.+ ..||.++ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 78999999999999999999999999755 3444 5566543 223
Q ss_pred HHHhCCCCccceE-EEE-eCCeEEEEEecCCCHHHHHHHH
Q psy6819 87 LVHTFEVKAVPAV-LAV-KNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 87 ~~~~~~v~~~Pt~-~~~-~~g~~~~~~~g~~~~~~l~~~i 124 (135)
+..+|++.++|+. +++ ++|+++.++.|..+.+++.+.+
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 5678899999887 566 9999999999999988887633
No 107
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.39 E-value=2.1e-12 Score=95.05 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=81.6
Q ss_pred EecChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHH---HHHhcCCCcEEEEEeCCCC----HhHHHhCCCCccce
Q psy6819 27 IIENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLK---KMLGNSDSIDLAIIDVEKN----AELVHTFEVKAVPA 98 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~---~l~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt 98 (135)
.+.+..++++.+.++ +||+++.|||+||-.||.+++..- +......++...++|...+ .++.++|++-++|+
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~ 537 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT 537 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE
Confidence 344555777777665 469999999999999999998752 3333477899999998754 35789999999999
Q ss_pred EEEE-eCCeEEEEEecCCCHHHHHHHHHhh
Q psy6819 99 VLAV-KNGLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 99 ~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
+++| .+|++.....|.++.+.+.+++++.
T Consensus 538 ~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999 5888777789999999999999875
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.38 E-value=1.6e-11 Score=79.26 Aligned_cols=93 Identities=11% Similarity=0.267 Sum_probs=74.7
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-----------------------------CHhHHH
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-----------------------------NAELVH 89 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-----------------------------~~~~~~ 89 (135)
.++++||+||++||+.|....+.+.++.++ ..++.++.|+.+. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 467899999999999999999999999888 3579999998753 123577
Q ss_pred hCCCCccceEEEE-eCCeEEEEEe---------cCCCHHHHHHHHHhhCCCCCC
Q psy6819 90 TFEVKAVPAVLAV-KNGLVIDKFI---------GLIENEMIENMVSKLLPKDKT 133 (135)
Q Consensus 90 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~l~~~i~~~~~~~~~ 133 (135)
.|++..+|+++++ ++|+++.... +..+..++.+.|..++.....
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 8899999999999 7998886531 234678899999998877654
No 109
>PLN02412 probable glutathione peroxidase
Probab=99.37 E-value=9.7e-12 Score=80.07 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=70.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-------C-HhH----HHhCC---------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-------N-AEL----VHTFE--------------- 92 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-------~-~~~----~~~~~--------------- 92 (135)
++++||.||++||+.|+...|.++++.++ ..++.++.|+++. . .++ .++++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~ 108 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKN 108 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCC
Confidence 68899999999999999999999999888 4569999998642 1 111 12211
Q ss_pred -------------------CCccceEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 93 -------------------VKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 93 -------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
+...|+.+++ ++|+++.++.|..+.++++..|+.++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 109 TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3345888888 9999999999999999999999988764
No 110
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6e-11 Score=73.81 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=74.1
Q ss_pred HHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEeCCC----------------CHhHHHhCCCCcc
Q psy6819 37 HVMNNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIIDVEK----------------NAELVHTFEVKAV 96 (135)
Q Consensus 37 ~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd~~~----------------~~~~~~~~~v~~~ 96 (135)
.+..+++..++.|.++.|.+|..+...+ .++.+- .+++.++.+++.. ..++++.|+|+++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3445688999999999999999998766 334433 6678888888642 3479999999999
Q ss_pred ceEEEE-eCCeEEEEEecCCCHHHHHHHHHhh
Q psy6819 97 PAVLAV-KNGLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 97 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
|++++| ++|+.+....|.++++++...+.-.
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 999999 8899999999999999998776544
No 111
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.31 E-value=6.7e-12 Score=71.61 Aligned_cols=73 Identities=21% Similarity=0.470 Sum_probs=54.8
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEe
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 103 (135)
+.++..+...+.+++++|+|+++||+.|+.+...+ .++.+. ..++.++.+|.+......+..+ .++|+++++.
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 45555666667789999999999999999998776 445553 5689999999986655433222 6799999873
No 112
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.29 E-value=2.7e-11 Score=74.69 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=56.6
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhC---CCCccceEEEE-eCCeEEEEEecCCC
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTF---EVKAVPAVLAV-KNGLVIDKFIGLIE 116 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~-~~g~~~~~~~g~~~ 116 (135)
..+..++.|..+|||.|....|.+.++++..+++.+-.+..|.++++.++| +...+|+++++ .+|+.+.++...
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger-- 117 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER-- 117 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS--
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC--
Confidence 355689999999999999999999999999888999999989888887765 57889999999 668888865543
Q ss_pred HHHHHHHHH
Q psy6819 117 NEMIENMVS 125 (135)
Q Consensus 117 ~~~l~~~i~ 125 (135)
++.+.+++.
T Consensus 118 P~~~~~~~~ 126 (129)
T PF14595_consen 118 PKEVQELVD 126 (129)
T ss_dssp -HHHH----
T ss_pred CHHHhhccc
Confidence 555555544
No 113
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.28 E-value=5.7e-11 Score=75.43 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC--------CC---HhHHHh-CC---------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE--------KN---AELVHT-FE--------------- 92 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~--------~~---~~~~~~-~~--------------- 92 (135)
++++||.||++||+.|+...|.++++.++ ..++.++.|++. .. ..++++ ++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 67899999999999999999999999888 457999999851 11 122221 21
Q ss_pred -----------CCccce----EEEE-eCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 93 -----------VKAVPA----VLAV-KNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 93 -----------v~~~Pt----~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
....|+ .+++ ++|+++.++.|..+.+++.+.|+.++
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 124675 5555 99999999999999999999888764
No 114
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.26 E-value=3.5e-11 Score=76.31 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=61.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-------CH----hHHHh-CC---------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-------NA----ELVHT-FE--------------- 92 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-------~~----~~~~~-~~--------------- 92 (135)
+++++|.||++||+ |....|.++++.++ ..++.++.|+++. .+ .+++. ++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 68899999999999 99999999999888 4578999987532 11 22222 22
Q ss_pred --------CCccc-----------eEEEE-eCCeEEEEEecCCCHHHHHHH
Q psy6819 93 --------VKAVP-----------AVLAV-KNGLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 93 --------v~~~P-----------t~~~~-~~g~~~~~~~g~~~~~~l~~~ 123 (135)
+.++| +.+++ ++|+++.++.|..+.+++++.
T Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 56666 999999999999988887654
No 115
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.25 E-value=1.2e-10 Score=77.74 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=69.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC-----------CCHhHHHhCCCCccceEEEE-eCC-eEE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE-----------KNAELVHTFEVKAVPAVLAV-KNG-LVI 108 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~-~~g-~~~ 108 (135)
++..+++||.+.|++|+.+.|.+..+++++ ++.+..|++| .+..++++|+|..+|+++++ .++ +..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 567899999999999999999999999996 5788888877 35789999999999999988 444 666
Q ss_pred EEEecCCCHHHHHHHH
Q psy6819 109 DKFIGLIENEMIENMV 124 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i 124 (135)
....|.++..+|.+-|
T Consensus 199 pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 199 PVSQGFMSLDELEDRI 214 (215)
T ss_pred EEeeecCCHHHHHHhh
Confidence 6777999999987654
No 116
>KOG0914|consensus
Probab=99.24 E-value=1.3e-11 Score=80.64 Aligned_cols=83 Identities=13% Similarity=0.333 Sum_probs=70.5
Q ss_pred ChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCC------CccceEE
Q psy6819 30 NNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEV------KAVPAVL 100 (135)
Q Consensus 30 ~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v------~~~Pt~~ 100 (135)
+.+.++..+..+ .+.|+|.||+.|.+.|+.+.|.+.++..+ .+.++|.+||+...+..+++|+| +..||++
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~i 210 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYI 210 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEE
Confidence 444455545433 56899999999999999999999999888 77899999999999999999987 5689999
Q ss_pred EEeCCeEEEEEe
Q psy6819 101 AVKNGLVIDKFI 112 (135)
Q Consensus 101 ~~~~g~~~~~~~ 112 (135)
+|++|+.+.|..
T Consensus 211 lFq~gkE~~RrP 222 (265)
T KOG0914|consen 211 LFQKGKEVSRRP 222 (265)
T ss_pred EEccchhhhcCc
Confidence 999999887654
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.22 E-value=1.6e-10 Score=72.08 Aligned_cols=83 Identities=10% Similarity=0.205 Sum_probs=67.6
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------CHhHHHhCCCCcc-
Q psy6819 42 PVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------NAELVHTFEVKAV- 96 (135)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------~~~~~~~~~v~~~- 96 (135)
+++++|.|| +.||+.|....+.+.++.+. ..++.++.|..+. +..+.+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678999999 58999999999999888776 4578888887543 3356888899888
Q ss_pred --------ceEEEE-eCCeEEEEEecCCCHHHHHHHH
Q psy6819 97 --------PAVLAV-KNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 97 --------Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 124 (135)
|+++++ ++|+++..+.|....+++.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 898888 7899999999998777776644
No 118
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.22 E-value=1.7e-10 Score=64.01 Aligned_cols=68 Identities=22% Similarity=0.598 Sum_probs=54.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh----HHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE----LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 121 (135)
+..|+++||++|+...+.+++. ++.+..+|++.++. +.+.+++.++|++++ +|+. ..|. +.+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~--~~~~---~~g~-~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI--GHKI---IVGF-DPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE--CCEE---EeeC-CHHHHH
Confidence 5689999999999998888663 58899999987765 456799999999987 3654 5665 778887
Q ss_pred HHH
Q psy6819 122 NMV 124 (135)
Q Consensus 122 ~~i 124 (135)
++|
T Consensus 71 ~~i 73 (74)
T TIGR02196 71 QLL 73 (74)
T ss_pred HHh
Confidence 776
No 119
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.20 E-value=3e-10 Score=63.82 Aligned_cols=72 Identities=29% Similarity=0.549 Sum_probs=57.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEec-CCCHHHHHHHHH
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIG-LIENEMIENMVS 125 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 125 (135)
.+++++|++|..+...+++++...+ +.+-.+|....+.+ .+|+|.++|++++ ||+.. +.| ..+.+++.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 3478889999999999999888864 88888888666666 9999999999976 89865 677 668889988874
No 120
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.20 E-value=1.5e-10 Score=69.02 Aligned_cols=85 Identities=27% Similarity=0.717 Sum_probs=68.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCC-CCHhHHHhCC--CCccceEEEEeCCeEEEEEec--CC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVE-KNAELVHTFE--VKAVPAVLAVKNGLVIDKFIG--LI 115 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~~ 115 (135)
++++++.||++||++|+.+.|.+.++++. ...+.+..+|.. ........|+ +..+|+++++.+|..+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 66889999999999999999999999988 436999999997 8899999999 999999998887776555555 44
Q ss_pred CHHHHHHHHHh
Q psy6819 116 ENEMIENMVSK 126 (135)
Q Consensus 116 ~~~~l~~~i~~ 126 (135)
....+......
T Consensus 112 ~~~~~~~~~~~ 122 (127)
T COG0526 112 PKEALIDALGE 122 (127)
T ss_pred CHHHHHHHhcc
Confidence 55555544433
No 121
>KOG0913|consensus
Probab=99.16 E-value=2e-11 Score=80.59 Aligned_cols=99 Identities=22% Similarity=0.416 Sum_probs=85.6
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
..+...+.++....+. .-+++.|+++||+.|+...+.|+.++.- .-++.+++||+..++.+.=+|-+...|||+-
T Consensus 24 s~~~~~~eenw~~~l~---gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT---GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred ceeEEecccchhhhhc---hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEE
Confidence 3556667777776442 2389999999999999999999999987 6689999999999999999999999999998
Q ss_pred EeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 102 VKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 102 ~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
.++|.. .++.|.++...+..++..
T Consensus 101 vkDGeF-rrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 101 VKDGEF-RRYSGARDKNDFISFEEH 124 (248)
T ss_pred eecccc-ccccCcccchhHHHHHHh
Confidence 899987 579999999999999865
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.15 E-value=6.1e-10 Score=62.42 Aligned_cols=70 Identities=19% Similarity=0.375 Sum_probs=51.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHh-----CCCCccceEEEEeCCeEEEEEecCCCHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHT-----FEVKAVPAVLAVKNGLVIDKFIGLIENEMI 120 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 120 (135)
++.||++||++|+.+.+.+.++ ++.+-.+|++.++..... +++.++|++ ++.+|+.+. ..+..++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~~ 71 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQV 71 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHHH
Confidence 6789999999999999988776 355677888877766555 489999997 467786543 3355566
Q ss_pred HHHHH
Q psy6819 121 ENMVS 125 (135)
Q Consensus 121 ~~~i~ 125 (135)
.+.++
T Consensus 72 ~~~l~ 76 (77)
T TIGR02200 72 KAKLQ 76 (77)
T ss_pred HHHhh
Confidence 55543
No 123
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.14 E-value=1.7e-09 Score=65.49 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=75.7
Q ss_pred hhHHHHHHhcCCCcEEEEEEcC----CChhhhhhh--HHHHHHHhcCCCcEEEEEeCCCC--HhHHHhCCCCccceEEEE
Q psy6819 31 NEQFIKHVMNNPVPVIVNFHAE----WCEPCHLLT--PQLKKMLGNSDSIDLAIIDVEKN--AELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 31 ~~~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~--~~~~~l~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 102 (135)
.++..+...+..|..+|++|++ ||..|+... |.+.++. ..++.++..|++.. ..++..++++++|+++++
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l--n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI--NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH--HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 3455555667789999999999 889997653 4444444 44788899998754 458899999999999988
Q ss_pred --eC--CeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 103 --KN--GLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 103 --~~--g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
++ .+++.+..|..+++++...+...++.
T Consensus 84 ~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 84 MLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23 44688999999999999998877643
No 124
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.13 E-value=9e-10 Score=71.94 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=65.0
Q ss_pred CCcE-EEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-------C-Hh---H-HHh----------------
Q psy6819 42 PVPV-IVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-------N-AE---L-VHT---------------- 90 (135)
Q Consensus 42 ~~~~-vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-------~-~~---~-~~~---------------- 90 (135)
++++ ++.+|++||++|+...|.++++.++ ..++.++.|+++. + .. . .++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 5654 4566999999999999999999887 4469999998631 0 10 0 111
Q ss_pred --------------------CCCCccce---EEEE-eCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 91 --------------------FEVKAVPA---VLAV-KNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 91 --------------------~~v~~~Pt---~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+++.++|+ .+++ ++|+++.++.|..+.+++.+.|.++++
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13446784 3555 999999999999999999999988764
No 125
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.10 E-value=6.1e-10 Score=70.71 Aligned_cols=79 Identities=13% Similarity=0.330 Sum_probs=54.8
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHhc-CCCcEEEEEeCCCCHhHHHhC--------CCCccceE
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQ-L--KKMLGN-SDSIDLAIIDVEKNAELVHTF--------EVKAVPAV 99 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~-~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 99 (135)
++..+.....+|+++|.++.+||+.|+.|... + .++++. +.++.-++||.++.|++.+.| +..++|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 34444456668999999999999999998753 3 445555 667888999999999998888 78999999
Q ss_pred EEE-eCCeEEEE
Q psy6819 100 LAV-KNGLVIDK 110 (135)
Q Consensus 100 ~~~-~~g~~~~~ 110 (135)
+|+ .+|+++..
T Consensus 107 vfltPdg~p~~~ 118 (163)
T PF03190_consen 107 VFLTPDGKPFFG 118 (163)
T ss_dssp EEE-TTS-EEEE
T ss_pred EEECCCCCeeee
Confidence 998 89998864
No 126
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.09 E-value=1.7e-09 Score=66.01 Aligned_cols=69 Identities=25% Similarity=0.583 Sum_probs=58.4
Q ss_pred CCCcEEEEEEcC-CChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------CHhHHHhCCCC--
Q psy6819 41 NPVPVIVNFHAE-WCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------NAELVHTFEVK-- 94 (135)
Q Consensus 41 ~~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------~~~~~~~~~v~-- 94 (135)
.+++++|.||+. ||+.|....+.++++.++ ..++.++.|+.+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 368999999999 999999999999998877 5589999998754 33578889998
Q ss_pred ----ccceEEEE-eCCeEEE
Q psy6819 95 ----AVPAVLAV-KNGLVID 109 (135)
Q Consensus 95 ----~~Pt~~~~-~~g~~~~ 109 (135)
.+|+++++ ++|++++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89999999 7887765
No 127
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.08 E-value=3e-09 Score=72.47 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-----------HhHHHhCCCCccceEEEE-eC-CeEE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-----------AELVHTFEVKAVPAVLAV-KN-GLVI 108 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~-~~-g~~~ 108 (135)
++..+++||...|++|+.+.|.+..++++++ +.+..|++|.. ...+++++|..+|+++++ .+ ++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence 4578999999999999999999999999963 77888887754 457899999999999988 44 6666
Q ss_pred EEEecCCCHHHHHHHHHhhCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
....|.++.++|.+-|...+..
T Consensus 229 pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEeeccCCHHHHHHHHHHHHhc
Confidence 6777999999999888776544
No 128
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.07 E-value=1.2e-09 Score=58.22 Aligned_cols=60 Identities=27% Similarity=0.587 Sum_probs=51.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHH---hCCCCccceEEEEeCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH---TFEVKAVPAVLAVKNG 105 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 105 (135)
++.||++||++|+.+.+.+.++.....++.+..++++......+ .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999983337789999999998877655 8899999999998766
No 129
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.07 E-value=2.4e-09 Score=60.98 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=46.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH-----hHHHhCCCCccceEEEEeCCeEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA-----ELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
|+.|+++||++|+.+.+.++++. ..+.+.++.+|.+.+. .+.+.+++..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~-i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN-VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC-CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 57899999999999999999976 2234778888876544 2667789999999854 77654
No 130
>KOG2501|consensus
Probab=99.06 E-value=5.3e-10 Score=70.11 Aligned_cols=68 Identities=28% Similarity=0.657 Sum_probs=55.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCH-------------------------hHHHhCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNA-------------------------ELVHTFE 92 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~-------------------------~~~~~~~ 92 (135)
+|.+.++|.+.||++|+.+.|.+.++.++ +..+.++.|+.|.+. .+.++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 58899999999999999999988776655 445888888876532 4688999
Q ss_pred CCccceEEEE-eCCeEEE
Q psy6819 93 VKAVPAVLAV-KNGLVID 109 (135)
Q Consensus 93 v~~~Pt~~~~-~~g~~~~ 109 (135)
|.++|++++. .+|..+.
T Consensus 113 v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVT 130 (157)
T ss_pred cCcCceeEEecCCCCEeh
Confidence 9999999988 8887765
No 131
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.06 E-value=3.5e-09 Score=68.54 Aligned_cols=86 Identities=8% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC----------------------------HhHHHh
Q psy6819 42 PVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN----------------------------AELVHT 90 (135)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~----------------------------~~~~~~ 90 (135)
++++||+|| +.||+.|....+.++++.++ ..++.++.|+.+.. ..+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 578999999 89999999999999998887 55788888876532 234667
Q ss_pred CCCC------ccceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 91 FEVK------AVPAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 91 ~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
|++. ..|+++++ ++|+++..+.+. .+.+++.+.|+.+
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7776 56788888 799999888554 2567788877665
No 132
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.04 E-value=5e-09 Score=70.99 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=71.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC-----------CHhHHHhCCCCccceEEEE--eCCeEE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK-----------NAELVHTFEVKAVPAVLAV--KNGLVI 108 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~--~~g~~~ 108 (135)
++..+++||.+.|++|+.+.|.+..+++++ ++.+..|++|. +...+++++|..+|+++++ ..++..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 446899999999999999999999999985 36666666653 2346789999999999988 446777
Q ss_pred EEEecCCCHHHHHHHHHhhCCCC
Q psy6819 109 DKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 109 ~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
....|.++.++|.+-|......-
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHhcc
Confidence 77889999999998887765543
No 133
>KOG3414|consensus
Probab=99.03 E-value=1.1e-08 Score=61.54 Aligned_cols=103 Identities=13% Similarity=0.302 Sum_probs=82.2
Q ss_pred EecChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC
Q psy6819 27 IIENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 104 (135)
.+.+..+.++.+.+. ++.+||-|..+|-+.|..+...+.+.++. ..-..++.+|+++.+.+.+.|++...|++++|-+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEc
Confidence 345667788877755 78999999999999999999999999998 6678899999999999999999999999999966
Q ss_pred CeEEEEEec--C--------CCHHHHHHHHHhhCC
Q psy6819 105 GLVIDKFIG--L--------IENEMIENMVSKLLP 129 (135)
Q Consensus 105 g~~~~~~~g--~--------~~~~~l~~~i~~~~~ 129 (135)
++-+..-.| . .+.+++.+.++-+..
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred CceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 665442222 2 246777777765543
No 134
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.03 E-value=6.1e-09 Score=68.25 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-------------------------CHhHHHhCCC
Q psy6819 42 PVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-------------------------NAELVHTFEV 93 (135)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-------------------------~~~~~~~~~v 93 (135)
++++||+|| +.||+.|....+.+.++.++ ..++.++.|+.+. +..+++.|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 578999999 99999999999999888776 4577888877653 2246778888
Q ss_pred C------ccceEEEE-eCCeEEEEEecC----CCHHHHHHHHHh
Q psy6819 94 K------AVPAVLAV-KNGLVIDKFIGL----IENEMIENMVSK 126 (135)
Q Consensus 94 ~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 126 (135)
. ..|+.+++ ++|+++....+. .+.+++.+.|+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 6 46888888 799998866432 256677666643
No 135
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.02 E-value=3.9e-09 Score=66.13 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCcEEEEEEcCC-ChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-----------------------HhHHHhCCCCc--
Q psy6819 42 PVPVIVNFHAEW-CEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-----------------------AELVHTFEVKA-- 95 (135)
Q Consensus 42 ~~~~vv~f~~~~-C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v~~-- 95 (135)
++++||+||+.| |+.|+...+.+.++.++..++.++.|+.+.. ..+++.|++..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 678999999988 6999999999999988866899999987521 34567788753
Q ss_pred ----cceEEEE-eCCeEEEEEecC--CCHHHHHHHH
Q psy6819 96 ----VPAVLAV-KNGLVIDKFIGL--IENEMIENMV 124 (135)
Q Consensus 96 ----~Pt~~~~-~~g~~~~~~~g~--~~~~~l~~~i 124 (135)
.|+.+++ ++|+++....|. .+..++.+.+
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6888888 799999988765 3344555443
No 136
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.02 E-value=4.5e-09 Score=67.70 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=58.9
Q ss_pred CCcEEEEEEcCC-ChhhhhhhHHHHHHHhcCCCcEEEEEeCCC-----------------------CHhHHHhCCCCccc
Q psy6819 42 PVPVIVNFHAEW-CEPCHLLTPQLKKMLGNSDSIDLAIIDVEK-----------------------NAELVHTFEVKAVP 97 (135)
Q Consensus 42 ~~~~vv~f~~~~-C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-----------------------~~~~~~~~~v~~~P 97 (135)
++++||.||+.| |+.|....+.++++.++..++.++.|+.|. ...+++.|++...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 678999999999 999999999999988875578888887542 22578889998777
Q ss_pred ---------eEEEE-eCCeEEEEEec
Q psy6819 98 ---------AVLAV-KNGLVIDKFIG 113 (135)
Q Consensus 98 ---------t~~~~-~~g~~~~~~~g 113 (135)
+.+++ ++|+++....+
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEEC
Confidence 77777 79999887754
No 137
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.01 E-value=7.9e-09 Score=65.56 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=62.4
Q ss_pred CCcEEEEEEcC-CChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------CHhHHHhCCCCcc-
Q psy6819 42 PVPVIVNFHAE-WCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------NAELVHTFEVKAV- 96 (135)
Q Consensus 42 ~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------~~~~~~~~~v~~~- 96 (135)
++++||+||+. ||+.|....+.+.++.+. ..++.++.|+.+. ...+.+.|++...
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 57899999975 788999988888888776 5578888888653 2346778887654
Q ss_pred -----------ceEEEE-eCCeEEEEEecCCCHHHHHHHH
Q psy6819 97 -----------PAVLAV-KNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 97 -----------Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i 124 (135)
|+.+++ ++|+++..+.|....+.+.+.+
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~ 149 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVL 149 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHH
Confidence 566667 7999999999876665554433
No 138
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.99 E-value=1.8e-08 Score=59.43 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=66.7
Q ss_pred eEecChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCH----hHHHhCCCC-ccce
Q psy6819 26 YIIENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNA----ELVHTFEVK-AVPA 98 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~----~~~~~~~v~-~~Pt 98 (135)
..+.+.+++.+.+..+ +++++|+=.+.+|+.+......+++.... .+++.++.+|+-.+. .++++|||. .-|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 3567888998877653 67888888999999999999999999888 445999999987654 578999997 5799
Q ss_pred EEEEeCCeEEEEEec-CCCHHHH
Q psy6819 99 VLAVKNGLVIDKFIG-LIENEMI 120 (135)
Q Consensus 99 ~~~~~~g~~~~~~~g-~~~~~~l 120 (135)
++++++|+.+..-+. .++.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 999999999986553 3455554
No 139
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.99 E-value=1.4e-08 Score=58.24 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=57.5
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH----hHHHhCC--CCccceEEEEeCCeEEEEEecCCCHH
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA----ELVHTFE--VKAVPAVLAVKNGLVIDKFIGLIENE 118 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~ 118 (135)
-|+.|+.+||++|+.....|+++..+..++.+..+|++.++ ++.+..+ +..+|++++ +|+.+. ..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CHH
Confidence 47889999999999999999999876568999999998753 4554444 588999764 786543 456
Q ss_pred HHHHHHHhhC
Q psy6819 119 MIENMVSKLL 128 (135)
Q Consensus 119 ~l~~~i~~~~ 128 (135)
++.++++..+
T Consensus 74 ~~~~~~~~~~ 83 (85)
T PRK11200 74 DFEAYVKENL 83 (85)
T ss_pred HHHHHHHHhc
Confidence 6777666543
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.97 E-value=7.6e-09 Score=62.65 Aligned_cols=77 Identities=19% Similarity=0.500 Sum_probs=53.6
Q ss_pred cChhHHHHHHhc---CCCcEEEEEEc-------CCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCH-------hHHH-
Q psy6819 29 ENNEQFIKHVMN---NPVPVIVNFHA-------EWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNA-------ELVH- 89 (135)
Q Consensus 29 ~~~~~~~~~~~~---~~~~~vv~f~~-------~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~-------~~~~- 89 (135)
...++|.+.+.. .+++++|+|++ +|||.|....|.+++.... ..+..++.+.+...+ .+.+
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 355677776653 45788888885 6999999999999887766 557899988875322 2344
Q ss_pred -hCCCCccceEEEEeCC
Q psy6819 90 -TFEVKAVPAVLAVKNG 105 (135)
Q Consensus 90 -~~~v~~~Pt~~~~~~g 105 (135)
+++++++||++-+..+
T Consensus 83 p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG 99 (119)
T ss_dssp -CC---SSSEEEECTSS
T ss_pred ceeeeeecceEEEECCC
Confidence 5999999999998666
No 141
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.97 E-value=9.7e-09 Score=64.48 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=32.7
Q ss_pred CcEEEE-EEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC
Q psy6819 43 VPVIVN-FHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK 83 (135)
Q Consensus 43 ~~~vv~-f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~ 83 (135)
++++|. |++.||+.|+...+.+.++.++ ..++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 445544 5699999999999999998887 4679999888654
No 142
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.97 E-value=5.1e-09 Score=70.76 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeC---------------------------------------
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV--------------------------------------- 81 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~--------------------------------------- 81 (135)
+++..++.|..+.|++|+++.+.+.++.+. ++++..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 356789999999999999999999887643 344443321
Q ss_pred -----CCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Q psy6819 82 -----EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 82 -----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
+.+..+++++||+++|+++ +.+|+. ..|..+.++|.++|+..
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1234578999999999988 688965 47999999999988753
No 143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.96 E-value=1.1e-08 Score=77.15 Aligned_cols=88 Identities=16% Similarity=0.328 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCcE-EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEE
Q psy6819 33 QFIKHVMNNPVPV-IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKF 111 (135)
Q Consensus 33 ~~~~~~~~~~~~~-vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 111 (135)
+..+.+..-++++ +-.|.+++|++|......+++++.+.+++..-.+|....++++++|+|.++|++++ ||+.+ +
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~ 541 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--Y 541 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--E
Confidence 3344444445565 55668999999999999999999998899999999999999999999999999987 88765 4
Q ss_pred ecCCCHHHHHHHH
Q psy6819 112 IGLIENEMIENMV 124 (135)
Q Consensus 112 ~g~~~~~~l~~~i 124 (135)
.|..+.+++..+|
T Consensus 542 ~G~~~~~~~~~~~ 554 (555)
T TIGR03143 542 FGKKTIEEMLELI 554 (555)
T ss_pred eeCCCHHHHHHhh
Confidence 5877999998876
No 144
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.94 E-value=1.9e-08 Score=63.27 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=60.8
Q ss_pred CcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------C--HhHHHhCCCCc-
Q psy6819 43 VPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------N--AELVHTFEVKA- 95 (135)
Q Consensus 43 ~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------~--~~~~~~~~v~~- 95 (135)
++++|.|| +.||+.|....+.+.++.++ ..++.++.|+.+. . ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 67888887 89999999999999998877 4578888887542 2 45677888873
Q ss_pred ---c--ceEEEE-eCCeEEEEEecCC----CHHHHHHHH
Q psy6819 96 ---V--PAVLAV-KNGLVIDKFIGLI----ENEMIENMV 124 (135)
Q Consensus 96 ---~--Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~i 124 (135)
. |+++++ ++|+++..+.|.. +..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 3 367777 7999999888864 344554443
No 145
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.87 E-value=3.6e-08 Score=65.36 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCcEEE-EEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------------CHhHHHhC
Q psy6819 42 PVPVIV-NFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------------NAELVHTF 91 (135)
Q Consensus 42 ~~~~vv-~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------------~~~~~~~~ 91 (135)
++.++| +|+++||+.|....+.+.++.++ ..++.++.|+++. +..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 455554 68899999999999999887776 4567888777653 23457778
Q ss_pred CCC------ccceEEEE-eCCeEEEEE----ecCCCHHHHHHHHHhhCC
Q psy6819 92 EVK------AVPAVLAV-KNGLVIDKF----IGLIENEMIENMVSKLLP 129 (135)
Q Consensus 92 ~v~------~~Pt~~~~-~~g~~~~~~----~g~~~~~~l~~~i~~~~~ 129 (135)
++. .+|+++++ ++|++.... .+..+.+++.+.++.+..
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 874 58999988 789887755 334588899888887643
No 146
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.87 E-value=6.7e-08 Score=63.31 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC-------------------------CHhHHHhCCC
Q psy6819 42 PVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK-------------------------NAELVHTFEV 93 (135)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~-------------------------~~~~~~~~~v 93 (135)
++++|++|| +.||+.|....+.+.++.++ ..++.++.|+.|. +..++++|++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 568999999 99999999999999888777 4567788777553 3356888888
Q ss_pred ----Ccc--ceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 94 ----KAV--PAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 94 ----~~~--Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
.++ |+.+++ ++|+++...... .+.+++.+.++.+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 356 998888 799988765432 4678888877654
No 147
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.87 E-value=3e-08 Score=61.68 Aligned_cols=76 Identities=11% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC----------------------CHhHHHhCCCCc
Q psy6819 41 NPVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK----------------------NAELVHTFEVKA 95 (135)
Q Consensus 41 ~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~----------------------~~~~~~~~~v~~ 95 (135)
.+++++|+|| +.||+.|....+.+.++.++ ..++.++.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4678999999 78999999999999988877 5678888888643 234677788876
Q ss_pred cc---------eEEEE-eCCeEEEEEecCCC
Q psy6819 96 VP---------AVLAV-KNGLVIDKFIGLIE 116 (135)
Q Consensus 96 ~P---------t~~~~-~~g~~~~~~~g~~~ 116 (135)
.| +++++ ++|+++..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 66777 68999998888754
No 148
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.87 E-value=6.2e-08 Score=55.68 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=55.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH----hHHHhCC--CCccceEEEEeCCeEEEEEecCCCHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA----ELVHTFE--VKAVPAVLAVKNGLVIDKFIGLIENEM 119 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 119 (135)
|+.|+.+||++|......|+++..+..++.+..+|++.+. ++.+..+ +..+|++++ +|+.+ | ...+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g--G~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G--GCTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c--CHHH
Confidence 6789999999999999999998766556888888887533 4556666 378999864 77653 2 3567
Q ss_pred HHHHHHhhC
Q psy6819 120 IENMVSKLL 128 (135)
Q Consensus 120 l~~~i~~~~ 128 (135)
+.+++++..
T Consensus 74 l~~~~~~~~ 82 (86)
T TIGR02183 74 FEQLVKENF 82 (86)
T ss_pred HHHHHHhcc
Confidence 777766543
No 149
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.86 E-value=4.4e-08 Score=73.38 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=74.7
Q ss_pred HHHHHHhcCCC-cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEE
Q psy6819 33 QFIKHVMNNPV-PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKF 111 (135)
Q Consensus 33 ~~~~~~~~~~~-~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 111 (135)
+..+.+..-++ ..+-.|.+++|++|......+++++..+++|.+-.+|....++++++|++.++|++++ +|+.+ +
T Consensus 106 ~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~ 181 (517)
T PRK15317 106 EVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--G 181 (517)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--E
Confidence 33334444344 4588999999999999999999999998899999999999999999999999999975 77644 5
Q ss_pred ecCCCHHHHHHHHHhh
Q psy6819 112 IGLIENEMIENMVSKL 127 (135)
Q Consensus 112 ~g~~~~~~l~~~i~~~ 127 (135)
.|..+.+++.+.+.+.
T Consensus 182 ~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 182 QGRMTLEEILAKLDTG 197 (517)
T ss_pred ecCCCHHHHHHHHhcc
Confidence 6888888888877654
No 150
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.83 E-value=9.8e-08 Score=56.63 Aligned_cols=95 Identities=11% Similarity=0.156 Sum_probs=68.9
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcC--CChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEE
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAE--WCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 100 (135)
..+...+.+++.+.+... ...+++|.++ .++.+....=.+.++.+. .+.+..+.++-+....+..+|++..+|+++
T Consensus 9 ~g~~~vd~~~ld~~l~~~-~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAP-GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHHHHHHCC-SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHHHHHhCC-CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 345555666666655553 3455555543 245555555578888888 667788888878888999999999999999
Q ss_pred EEeCCeEEEEEecCCCHHH
Q psy6819 101 AVKNGLVIDKFIGLIENEM 119 (135)
Q Consensus 101 ~~~~g~~~~~~~g~~~~~~ 119 (135)
++++|+.++...|..+..+
T Consensus 88 f~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEETTEEEEEEESSSTHHH
T ss_pred EEECCEEEEEecCeecccc
Confidence 9999999999999887765
No 151
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.81 E-value=3.3e-07 Score=59.44 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=82.6
Q ss_pred hcccceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCC--ccc
Q psy6819 21 RKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVK--AVP 97 (135)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~--~~P 97 (135)
...+.+...+.+.+.........++++.|..........+...++.+++. .+.+.|+.+|++..+.+++.|++. .+|
T Consensus 74 ~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 74 NSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLP 153 (184)
T ss_dssp HSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSS
T ss_pred hccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCC
Confidence 34466677777777765444333477888777788888999999999988 777999999999999999999998 899
Q ss_pred eEEEEe--CCeEEEEEecCCCHHHHHHHHHh
Q psy6819 98 AVLAVK--NGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 98 t~~~~~--~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+++++. .++......|..+.+.+.+|+++
T Consensus 154 ~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 ALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 999884 45433334788999999999864
No 152
>PRK15000 peroxidase; Provisional
Probab=98.81 E-value=1.2e-07 Score=62.74 Aligned_cols=87 Identities=14% Similarity=0.268 Sum_probs=67.6
Q ss_pred CCCcEEEEEEc-CCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC----------------------------HhHHH
Q psy6819 41 NPVPVIVNFHA-EWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN----------------------------AELVH 89 (135)
Q Consensus 41 ~~~~~vv~f~~-~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~----------------------------~~~~~ 89 (135)
.++++||+||. .||+.|....+.+.++.++ ..++.++.|++|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 36789999998 5999999999999988877 45788888887631 23567
Q ss_pred hCCCC------ccceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 90 TFEVK------AVPAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 90 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
.|++. .+|+.+++ ++|++.....+. .+.+++.+.++.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 68999988 799998877664 3567787777654
No 153
>KOG0911|consensus
Probab=98.81 E-value=3.8e-09 Score=69.57 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=77.0
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCe
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGL 106 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 106 (135)
.+...++| +.+.++..+++||++||..|+.+...++.+++...++.+++++.+..++++..+.+..+|.++++..|+
T Consensus 5 ~i~~~~~f---~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~ 81 (227)
T KOG0911|consen 5 FIVFQEQF---LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGE 81 (227)
T ss_pred eehhHHHH---HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecch
Confidence 34455666 233678899999999999999999999999988788999999999999999999999999999999999
Q ss_pred EEEEEecCCCHH
Q psy6819 107 VIDKFIGLIENE 118 (135)
Q Consensus 107 ~~~~~~g~~~~~ 118 (135)
.+.+..|.....
T Consensus 82 ~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 82 KVDRLSGADPPF 93 (227)
T ss_pred hhhhhhccCcHH
Confidence 998888885443
No 154
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.80 E-value=7.4e-08 Score=53.04 Aligned_cols=67 Identities=16% Similarity=0.378 Sum_probs=48.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhC----CCCccceEEEEeCCeEEEEEecCCCHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTF----EVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 121 (135)
++.|+++||++|..+...+.+. ++.+..+|++.++...+.+ ++..+|++++ +|+ ...|. +.+.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHHHHH
Confidence 5789999999999988887763 5777888888766554443 6889999875 553 34554 677776
Q ss_pred HH
Q psy6819 122 NM 123 (135)
Q Consensus 122 ~~ 123 (135)
++
T Consensus 71 ~~ 72 (73)
T cd02976 71 AL 72 (73)
T ss_pred hh
Confidence 65
No 155
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.77 E-value=9.2e-08 Score=51.11 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=44.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHh----CCCCccceEEEEeCCeE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHT----FEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~ 107 (135)
|+.|+.+||++|+.....|++. ++.+-.+|++.++...+. .+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5789999999999999888665 588999999988654433 49999999886 7765
No 156
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.76 E-value=5.1e-08 Score=64.36 Aligned_cols=76 Identities=25% Similarity=0.415 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeC----------------------------------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---------------------------------------- 81 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~---------------------------------------- 81 (135)
.+..++.|+.+.|++|+.+.+.+.+ ..+++++..+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 5689999999999999999998876 222344443321
Q ss_pred -----CCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy6819 82 -----EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 82 -----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 124 (135)
+.+..+++.++|+++|+++ +.+|+. ..|..+.++|.++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1233578899999999997 788865 56888888887653
No 157
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.74 E-value=2e-07 Score=69.82 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=73.2
Q ss_pred HHHhcCC-CcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecC
Q psy6819 36 KHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGL 114 (135)
Q Consensus 36 ~~~~~~~-~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 114 (135)
+.+..-+ ...+-.|.++.|++|......+++++..+++|..-.+|....++++++|++.++|++++ ||+.. +.|.
T Consensus 110 ~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~ 185 (515)
T TIGR03140 110 DRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGR 185 (515)
T ss_pred HHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecC
Confidence 3344333 34688999999999999999999999998899999999999999999999999999986 77644 5688
Q ss_pred CCHHHHHHHHHhh
Q psy6819 115 IENEMIENMVSKL 127 (135)
Q Consensus 115 ~~~~~l~~~i~~~ 127 (135)
.+.+++.+.+...
T Consensus 186 ~~~~~~~~~l~~~ 198 (515)
T TIGR03140 186 MDLAELLEKLEET 198 (515)
T ss_pred CCHHHHHHHHhhc
Confidence 8888887777654
No 158
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.74 E-value=1.3e-07 Score=64.64 Aligned_cols=82 Identities=18% Similarity=0.383 Sum_probs=59.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeC----------------------------------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---------------------------------------- 81 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~---------------------------------------- 81 (135)
.+.+|+.|..+.|++|+++.+.+.++.+. +++++..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 45689999999999999999888876654 2355544431
Q ss_pred ----------CCCHhHHHhCCCCccceEEEEe-CCeEEEEEecCCCHHHHHHHHH
Q psy6819 82 ----------EKNAELVHTFEVKAVPAVLAVK-NGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 82 ----------~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
+.+..+++++||+++|++++-. +|+. ....|..+.++|.+.+.
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence 0022367889999999998763 4643 45789989999988764
No 159
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.73 E-value=8.1e-07 Score=54.13 Aligned_cols=100 Identities=10% Similarity=0.247 Sum_probs=75.6
Q ss_pred EecChhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEE-e
Q psy6819 27 IIENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV-K 103 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~ 103 (135)
.+.+.-+.++.+.+. ++.++|-|..+|-+.|..+...+.+.++. ..-..++.+|.++-+.+.+.|.+. -|..++| -
T Consensus 4 ~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 4 HLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFF 82 (133)
T ss_dssp EE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEE
T ss_pred ccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEe
Confidence 345667788877754 78999999999999999999999999998 778899999999999999999999 7865554 5
Q ss_pred CCeEEEEEecC----------CCHHHHHHHHHhh
Q psy6819 104 NGLVIDKFIGL----------IENEMIENMVSKL 127 (135)
Q Consensus 104 ~g~~~~~~~g~----------~~~~~l~~~i~~~ 127 (135)
+++.+.--.|. .+.+++...++.+
T Consensus 83 rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 83 RNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp TTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred cCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 77766533332 1356777766543
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.73 E-value=1.3e-07 Score=59.50 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=31.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEe
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIID 80 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 80 (135)
.++.|+.|+.++|++|+.+.+.+.++....+++++...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 567899999999999999999999987665566666544
No 161
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.72 E-value=2.8e-07 Score=52.15 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=44.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH-----hHHHhCCCCccceEEEEeCCeEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA-----ELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
|+.|+++||++|+.+.+.++++.. ...++.++.+.+. .+.+..+..++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 578999999999999999998854 4667777776552 355667889999974 477654
No 162
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.72 E-value=2.7e-07 Score=52.12 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC---HhHHHhCCCCccceEEEEeCCeEE
Q psy6819 43 VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN---AELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
+.-|+.|+.+||++|+..+..|++. ++.+-.+|++.+ ..+.+..+...+|.+++ +|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 3458889999999999999888764 577778888766 34555668899999864 78654
No 163
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.72 E-value=7.1e-08 Score=60.17 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=35.3
Q ss_pred CCCcEEEEEEcCCChh-hhhhhHHHHHHHhc-C----CCcEEEEEeCC
Q psy6819 41 NPVPVIVNFHAEWCEP-CHLLTPQLKKMLGN-S----DSIDLAIIDVE 82 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~-C~~~~~~~~~l~~~-~----~~v~~~~vd~~ 82 (135)
.+++++|.||++||+. |....+.++++.++ . .++.++.|+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 3678999999999997 99999999998876 2 25899988865
No 164
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.72 E-value=1.1e-07 Score=62.13 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE 82 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~ 82 (135)
++++||.|||+||+.|++ .+.|+++.++ ..++.++.+.++
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 689999999999999975 7789999887 457999999874
No 165
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.67 E-value=4.7e-07 Score=60.10 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=62.3
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC---------------------------CHhHHHhCCCC
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK---------------------------NAELVHTFEVK 94 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~---------------------------~~~~~~~~~v~ 94 (135)
.+++.|+++||+.|....+.+.++.++ ..++.++.|+++. +..+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 345578899999999999999998877 5678888888664 22467788875
Q ss_pred ----c----cceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 95 ----A----VPAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 95 ----~----~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
+ +|+++++ ++|++.....+. .+.+++.+.|+.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 3456767 789988776653 3577888888765
No 166
>KOG3425|consensus
Probab=98.66 E-value=2.4e-07 Score=55.39 Aligned_cols=76 Identities=22% Similarity=0.433 Sum_probs=56.8
Q ss_pred cChhHHHHHHhc--CCCcEEEEEEc--------CCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCH-------hHHHh
Q psy6819 29 ENNEQFIKHVMN--NPVPVIVNFHA--------EWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNA-------ELVHT 90 (135)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~vv~f~~--------~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~-------~~~~~ 90 (135)
.-.++|.+.+.+ +++.++|+|++ +|||.|....|.+.+..+. ..++.|+.+++...+ .+...
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 344556555542 34458889986 7999999999999888776 778999999986543 35566
Q ss_pred CCC-CccceEEEEeC
Q psy6819 91 FEV-KAVPAVLAVKN 104 (135)
Q Consensus 91 ~~v-~~~Pt~~~~~~ 104 (135)
.++ .++||++-+.+
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 666 89999998863
No 167
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.65 E-value=6.8e-07 Score=62.70 Aligned_cols=102 Identities=17% Similarity=0.292 Sum_probs=72.1
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhh------HHHHHHHhc---CCCcEEEEEeCCCCHhHHHhCCCCcc
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLT------PQLKKMLGN---SDSIDLAIIDVEKNAELVHTFEVKAV 96 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~~~~l~~~---~~~v~~~~vd~~~~~~~~~~~~v~~~ 96 (135)
+...+..+|.+.+... +..+|+||.+-- ..+... ..+-+|+.+ ..++.|+.||..++..+++++|+...
T Consensus 36 Vi~LneKNfk~~lKky-d~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~ 113 (383)
T PF01216_consen 36 VIDLNEKNFKRALKKY-DVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEE 113 (383)
T ss_dssp CEEE-TTTHHHHHHH--SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--ST
T ss_pred eEEcchhHHHHHHHhh-cEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcccc
Confidence 4455778898866654 467788887752 333322 223344444 67899999999999999999999999
Q ss_pred ceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 97 PAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 97 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
+++.+|++|+.+. +.|..++..|..||.++++.
T Consensus 114 ~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 114 GSIYVFKDGEVIE-YDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp TEEEEEETTEEEE-E-S--SHHHHHHHHHHHHSS
T ss_pred CcEEEEECCcEEE-ecCccCHHHHHHHHHHhccc
Confidence 9999999999986 67999999999999998764
No 168
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.64 E-value=8.8e-07 Score=60.77 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=64.9
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC----------------------------CHhHHHh
Q psy6819 42 PVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK----------------------------NAELVHT 90 (135)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~----------------------------~~~~~~~ 90 (135)
++++|++|| +.||+.|....+.+.++.++ ..++.++.|++|. +..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 467788887 89999999999999888777 4567788777654 2346788
Q ss_pred CCCC-----ccceEEEE-eCCeEEEEEec----CCCHHHHHHHHHhh
Q psy6819 91 FEVK-----AVPAVLAV-KNGLVIDKFIG----LIENEMIENMVSKL 127 (135)
Q Consensus 91 ~~v~-----~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~ 127 (135)
||+. ..|+.+++ ++|+++..... ..+.+++.+.|+.+
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8885 57999988 69998886532 24678888877655
No 169
>PRK13189 peroxiredoxin; Provisional
Probab=98.63 E-value=7.9e-07 Score=59.83 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=63.2
Q ss_pred CCcE-EEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC---------------------------HhHHHhC
Q psy6819 42 PVPV-IVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN---------------------------AELVHTF 91 (135)
Q Consensus 42 ~~~~-vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~---------------------------~~~~~~~ 91 (135)
++.+ |++|+++||+.|....+.+.++.++ ..++.++.|++|.. ..+++.|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 4544 4567799999999999999888777 56788888876632 2357777
Q ss_pred CCC-------ccceEEEE-eCCeEEEEEec----CCCHHHHHHHHHhh
Q psy6819 92 EVK-------AVPAVLAV-KNGLVIDKFIG----LIENEMIENMVSKL 127 (135)
Q Consensus 92 ~v~-------~~Pt~~~~-~~g~~~~~~~g----~~~~~~l~~~i~~~ 127 (135)
++. .+|+++++ ++|++.+...+ ..+.+++.+.|+.+
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 865 46888888 79998876553 33577888888765
No 170
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.58 E-value=6.1e-07 Score=49.73 Aligned_cols=66 Identities=17% Similarity=0.458 Sum_probs=49.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhC---CCCccceEEEEeCCeEEEEEecCCCHHHHHH
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTF---EVKAVPAVLAVKNGLVIDKFIGLIENEMIEN 122 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 122 (135)
..|..++|++|+.....|++. ++.+-.+|++.++...+.+ +...+|++++ +|.. ...|. +.+.+.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~-~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGF-RPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEecc-CHHHHHh
Confidence 567889999999999888764 6788889998887665544 8889999765 5542 34554 6776654
No 171
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.58 E-value=1.3e-06 Score=48.32 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=47.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh---HHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE---LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIEN 122 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 122 (135)
++.|..+||++|...+..|++. ++.+..+|++.+.. +.+..+...+|.+++ +|+.+. ..+++.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig------g~~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG------GSDDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe------CHHHHHH
Confidence 6789999999999999888864 57777888776653 334458889999753 776542 3556665
Q ss_pred HH
Q psy6819 123 MV 124 (135)
Q Consensus 123 ~i 124 (135)
++
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 54
No 172
>PHA03050 glutaredoxin; Provisional
Probab=98.58 E-value=1.1e-06 Score=52.51 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=46.8
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC---C----HhHHHhCCCCccceEEEEeCCe
Q psy6819 34 FIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK---N----AELVHTFEVKAVPAVLAVKNGL 106 (135)
Q Consensus 34 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~ 106 (135)
+.+.+.+.++ |+.|..+|||+|+.....|++..-.... +-.+|++. . ..+.+..+-+.+|++++ +|+
T Consensus 5 ~v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 5 FVQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred HHHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcCC--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 3333444443 7889999999999999999887543333 44555543 2 23556668889999865 786
Q ss_pred EEE
Q psy6819 107 VID 109 (135)
Q Consensus 107 ~~~ 109 (135)
.+.
T Consensus 79 ~iG 81 (108)
T PHA03050 79 SIG 81 (108)
T ss_pred EEe
Confidence 553
No 173
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.58 E-value=2.4e-06 Score=48.45 Aligned_cols=76 Identities=13% Similarity=0.332 Sum_probs=60.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC----eEEEEEecCCCHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG----LVIDKFIGLIENEMIE 121 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g----~~~~~~~g~~~~~~l~ 121 (135)
|++|..+.|+-|......+.++.... .+.+-.||++.++++..+|+. .+|.+.+ +| .......+..+.+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHHH
Confidence 78899999999999999999876554 499999999999999999995 7999765 33 1123456788999999
Q ss_pred HHHH
Q psy6819 122 NMVS 125 (135)
Q Consensus 122 ~~i~ 125 (135)
++|+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 174
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.57 E-value=1.5e-06 Score=58.18 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCc-EEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC---------------------------HhHHHhC
Q psy6819 42 PVP-VIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN---------------------------AELVHTF 91 (135)
Q Consensus 42 ~~~-~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~---------------------------~~~~~~~ 91 (135)
++. +++.|+++||+.|....+.+.++.++ ..++.++.|++|.. ..+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 444 45788899999999999999988877 45788888887642 2357778
Q ss_pred CCC-------ccceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 92 EVK-------AVPAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 92 ~v~-------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
++. .+|+++++ ++|++....... .+.+++.+.++.+
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 773 57999988 789988765422 3578888888765
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.54 E-value=1.5e-06 Score=65.77 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCc-EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEE-eCCeEE-E
Q psy6819 33 QFIKHVMNNPVP-VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV-KNGLVI-D 109 (135)
Q Consensus 33 ~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~-~ 109 (135)
++...+..-.++ .++.|+++.|.+|.++...++++++..+.+++...|..++...+++|+++..|++.++ .+|+.. -
T Consensus 356 ~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 356 QLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 344444443444 5678888899999999999999998888999999999999999999999999999998 466433 4
Q ss_pred EEecCCCHHHHHHHHHhhCCCC
Q psy6819 110 KFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 110 ~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
++.|...-.++..+|..++.-.
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred EEEecCccHhHHHHHHHHHHhc
Confidence 7889989999999999886544
No 176
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.54 E-value=2.1e-06 Score=57.46 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCcEEE-EEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC---------------------------HhHHHhC
Q psy6819 42 PVPVIV-NFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN---------------------------AELVHTF 91 (135)
Q Consensus 42 ~~~~vv-~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~---------------------------~~~~~~~ 91 (135)
++.++| +|+++||+.|....+.+.++.++ ..++.++.+++|.. ..+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 455554 77899999999999999988877 56788888887632 2456677
Q ss_pred CCC-------ccceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 92 EVK-------AVPAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 92 ~v~-------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
++. ..|+.+++ ++|++.....+. .+.+++.+.|+.+
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 763 36888888 789988865433 3678888888765
No 177
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.52 E-value=1.2e-06 Score=49.26 Aligned_cols=56 Identities=14% Similarity=0.350 Sum_probs=42.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHH----hCCCCccceEEEEeCCeEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH----TFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~ 108 (135)
|+.|+.+||++|+.....+++. ++.+-.+|++.++...+ ..+...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4578899999999999999875 46777778887765543 347789999754 77654
No 178
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.51 E-value=1.9e-06 Score=47.82 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=44.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh----HHHhCCCCccceEEEEeCCeEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE----LVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
++.|+.+||++|+.....|++. ++.+..+|++.++. +.+..+-..+|++++ +|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 6778999999999999888875 57788889987765 455557788999865 776554
No 179
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.49 E-value=4.3e-06 Score=47.44 Aligned_cols=71 Identities=21% Similarity=0.455 Sum_probs=53.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHH---HhCCCCccceEEEEeCCeEEEEEecCCCHHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELV---HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIEN 122 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 122 (135)
+..|..+||++|+..+..|.+. ++.|-.+|++.+++.. +..+...+|++++ ++. ...|+ +.+.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-RPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-CHHHHHH
Confidence 6778899999999999888653 6889999999877643 3457789999865 453 34566 7888887
Q ss_pred HHHhh
Q psy6819 123 MVSKL 127 (135)
Q Consensus 123 ~i~~~ 127 (135)
++-..
T Consensus 72 ~~~~~ 76 (81)
T PRK10329 72 LHPAP 76 (81)
T ss_pred HHHhh
Confidence 76543
No 180
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.49 E-value=3.2e-06 Score=46.96 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHH----hCCCC-ccceEEEEeCCeEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH----TFEVK-AVPAVLAVKNGLVI 108 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~-~~Pt~~~~~~g~~~ 108 (135)
++.|+.++|++|......|++. ++.+-.+|++.+++..+ ..+.. .+|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5678899999999999888774 57788888887755443 35666 8998764 77654
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.48 E-value=9.2e-07 Score=52.14 Aligned_cols=57 Identities=26% Similarity=0.456 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh-------HHHhCCCCccceEEEEeCCeEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE-------LVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
|+.|..+||++|++....|.+. ++.+..+|++.++. +.+..+.+.+|.++ -+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEEc
Confidence 7789999999999999888776 35566677765533 33445678999975 4786543
No 182
>KOG3171|consensus
Probab=98.48 E-value=7.1e-07 Score=58.68 Aligned_cols=106 Identities=18% Similarity=0.330 Sum_probs=85.1
Q ss_pred hhcccceEecChhHHHHHHhcCCC--cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccc
Q psy6819 20 ERKFKSYIIENNEQFIKHVMNNPV--PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVP 97 (135)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 97 (135)
.+.-.++++.+..+|.+.+...-+ .++|++|-+.-.-|..+...+.-|+.+++.++|+++-.. +....++|...++|
T Consensus 135 p~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss-~~gas~~F~~n~lP 213 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSS-NTGASDRFSLNVLP 213 (273)
T ss_pred CccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeec-cccchhhhcccCCc
Confidence 344468899999999998876533 577999999999999999999999999999999999844 44678899999999
Q ss_pred eEEEEeCCeEEEEEecC-------CCHHHHHHHHHh
Q psy6819 98 AVLAVKNGLVIDKFIGL-------IENEMIENMVSK 126 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~-------~~~~~l~~~i~~ 126 (135)
++++|++|+.+..+... .....+..|+..
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 99999999998754421 234556666654
No 183
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.46 E-value=2.2e-06 Score=46.78 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=43.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhH----HHhCCCCccceEEEEeCCeEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL----VHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
++.|+++||++|+.....+.+.. +.+..+|++.+++. .+..+...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56789999999999999988763 77888998877654 3345777889775 3786654
No 184
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.46 E-value=7.6e-06 Score=48.04 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHH----HhCCCCccceEEEEeCCeEEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELV----HTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
+||++|+.....|.+. ++.+..+|++.+++.. +..+-..+|.+++ +|+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 8999999999998876 4678888988776543 4456778999864 786543
No 185
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.44 E-value=1.2e-05 Score=49.67 Aligned_cols=107 Identities=13% Similarity=0.197 Sum_probs=74.2
Q ss_pred ceEecChhHHHHHHhcCCCcEEEEEEcC--CC-hhh-hhhhHHHHHHHhc-CCC-cEEEEEeCCCCHhHHHhCCCC--cc
Q psy6819 25 SYIIENNEQFIKHVMNNPVPVIVNFHAE--WC-EPC-HLLTPQLKKMLGN-SDS-IDLAIIDVEKNAELVHTFEVK--AV 96 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C-~~C-~~~~~~~~~l~~~-~~~-v~~~~vd~~~~~~~~~~~~v~--~~ 96 (135)
.+++++.+.+.. .-...+.-+|.|.-. .| ..+ ..+...+.++++. .++ +.|+.+|.+....+.+.||+. .+
T Consensus 4 ~~~l~~~~~~~~-~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 4 IIELTSEDVFEE-TCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred eEEecCHHHHHh-hccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 445555555554 333345555555432 12 223 3567788999988 566 999999999999999999995 49
Q ss_pred ceEEEEeCCeEEEE-EecCCCHHHHHHHHHhhCCCCC
Q psy6819 97 PAVLAVKNGLVIDK-FIGLIENEMIENMVSKLLPKDK 132 (135)
Q Consensus 97 Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~~~~ 132 (135)
|+++++...+..+. ..|..+.+.+.+|+++.+...-
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 99998833221232 6688999999999999987654
No 186
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.42 E-value=5.9e-06 Score=54.70 Aligned_cols=86 Identities=9% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCcEEEEEEc-CCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCC----------------------------HhHHHh
Q psy6819 42 PVPVIVNFHA-EWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKN----------------------------AELVHT 90 (135)
Q Consensus 42 ~~~~vv~f~~-~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~----------------------------~~~~~~ 90 (135)
++.++|+||. .||+.|....+.+.++.++ ..++.++.|+++.. .++++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 5688889994 7899999888888888777 55788888887632 246778
Q ss_pred CCCC------ccceEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 91 FEVK------AVPAVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 91 ~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
|++. .+|+.+++ ++|+++....+. .+.+++.+.|+.+
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8875 36888888 789988766553 2455666666544
No 187
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.40 E-value=3.7e-06 Score=53.42 Aligned_cols=80 Identities=18% Similarity=0.387 Sum_probs=61.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc---CCCcEEEEEeCCC-----------------------------------
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN---SDSIDLAIIDVEK----------------------------------- 83 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~~v~~~~vd~~~----------------------------------- 83 (135)
.+++|+.|++..|++|..+.+.+.++.+. .+.+.+...++-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 46789999999999999999998877766 5788888887421
Q ss_pred ---------------------------------CHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 84 ---------------------------------NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 84 ---------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
....+++++|.++||+++ ||+. ..|..+.+++.+.|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 001355668999999998 9976 4778899999998874
No 188
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.37 E-value=2.8e-06 Score=56.56 Aligned_cols=39 Identities=10% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEe
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIID 80 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd 80 (135)
+++.||.|++-.|++|..+.+.+ +.+.+. .+++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 46789999999999999999865 666666 5566666544
No 189
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8e-06 Score=46.22 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=46.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH-----hHHHhC-CCCccceEEEEeCCeEEEEEecCCCHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA-----ELVHTF-EVKAVPAVLAVKNGLVIDKFIGLIENEM 119 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 119 (135)
++.|..++||+|+.....|.+. ++.+..++++.++ +..++. +.+.+|++++ +|+. ..|..+..+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~---igg~~d~~~ 72 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH---VGGCDDLDA 72 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE---EeCcccHHH
Confidence 6778899999999999888854 5777777777655 334444 7899999876 6653 334445555
Q ss_pred HHH
Q psy6819 120 IEN 122 (135)
Q Consensus 120 l~~ 122 (135)
+..
T Consensus 73 ~~~ 75 (80)
T COG0695 73 LEA 75 (80)
T ss_pred HHh
Confidence 543
No 190
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.31 E-value=2.8e-06 Score=54.85 Aligned_cols=39 Identities=15% Similarity=0.418 Sum_probs=31.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEE
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAII 79 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~v 79 (135)
..++.|+.|+...|++|+.+.+.+.++.++ .+++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 467899999999999999999999888776 445666543
No 191
>KOG2603|consensus
Probab=98.31 E-value=1.4e-05 Score=55.49 Aligned_cols=105 Identities=21% Similarity=0.371 Sum_probs=75.9
Q ss_pred ccceEecChhHHHHHHhcCCC--cEEEEEEc----CCChhhhhhhHHHHHHHhc----CC-----CcEEEEEeCCCCHhH
Q psy6819 23 FKSYIIENNEQFIKHVMNNPV--PVIVNFHA----EWCEPCHLLTPQLKKMLGN----SD-----SIDLAIIDVEKNAEL 87 (135)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~vv~f~~----~~C~~C~~~~~~~~~l~~~----~~-----~v~~~~vd~~~~~~~ 87 (135)
...+--.+.+.+...++...+ ..++.|.| ..|.-|+.....++-++.. ++ .+-|+.||.++.++.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 344444477888887775543 25666665 4799999999999888765 11 467999999999999
Q ss_pred HHhCCCCccceEEEE--eCCeEEE------EEecCCCHHHHHHHHHhhC
Q psy6819 88 VHTFEVKAVPAVLAV--KNGLVID------KFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 88 ~~~~~v~~~Pt~~~~--~~g~~~~------~~~g~~~~~~l~~~i~~~~ 128 (135)
.+.++++.+|++++| ..|.... ...|. .++++.+|+++..
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRT 166 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhh
Confidence 999999999999999 2333221 11233 3788888888753
No 192
>KOG3170|consensus
Probab=98.26 E-value=1.3e-05 Score=52.26 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=75.2
Q ss_pred cceEecChhHHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 24 KSYIIENNEQFIKHVMNN--PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
..+...+..+|...++.+ +--+||+.|...-+.|..+...++.++..++.++|+++-.... ...|--...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEE
Confidence 344455666676666644 3457799999999999999999999999999999999875443 34556678899999
Q ss_pred EeCCeEEEEEecC-------CCHHHHHHHHHh
Q psy6819 102 VKNGLVIDKFIGL-------IENEMIENMVSK 126 (135)
Q Consensus 102 ~~~g~~~~~~~g~-------~~~~~l~~~i~~ 126 (135)
|..|.+...+.|. .+.+++..++-+
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9988877666654 246677766654
No 193
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.24 E-value=2.7e-05 Score=45.04 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=38.1
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhH----HHhCCCCccceEEEEeCCeEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL----VHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
+||++|+.....|++. ++.+..+|++.++++ .+..+-+.+|+++ .+|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence 7999999999888876 477888888877654 3445778899974 378654
No 194
>PRK10824 glutaredoxin-4; Provisional
Probab=98.23 E-value=1.4e-05 Score=48.28 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=36.8
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHH----HhCCCCccceEEEEeCCeEEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELV----HTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
|||++|+.....|..+ ++.+..+|++.++++. +.-+-+.+|.+++ +|+.++
T Consensus 28 p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 6999999999988886 3555667777666543 3346677888765 887664
No 195
>PRK10638 glutaredoxin 3; Provisional
Probab=98.15 E-value=2.6e-05 Score=44.34 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=42.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh----HHHhCCCCccceEEEEeCCeEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE----LVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
++.|..+||++|+.....+++. ++.+..+|++.++. +.+..+...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 6678889999999999888875 46777888877654 345557788998754 776553
No 196
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.14 E-value=8.2e-05 Score=43.29 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=65.6
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 105 (135)
.+.+.+++.. +...++++||-|+.+++. .....+.+++.. .+.+.|+.++ +..+.+.+++.. |++++|+..
T Consensus 3 ~i~s~~~l~~-~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 3 ELTSKEELEK-FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred ecCCHHHHHH-HhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 4456666666 345567788899998887 456677888877 5678887776 567788787754 888888543
Q ss_pred -eEEEEEecCCCHHHHHHHHHh
Q psy6819 106 -LVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 106 -~~~~~~~g~~~~~~l~~~i~~ 126 (135)
.....+.|..+.+.|.+||..
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHh
Confidence 333457787788899999864
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.99 E-value=3.9e-05 Score=44.12 Aligned_cols=56 Identities=23% Similarity=0.472 Sum_probs=42.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCC--CC------------------------------HhHHHhCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVE--KN------------------------------AELVHTFE 92 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~--~~------------------------------~~~~~~~~ 92 (135)
|..|+++.|++|..+.+.+.++... .+++.+....+. .. ...++.++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999998644 556777666542 11 23467789
Q ss_pred CCccceEEE
Q psy6819 93 VKAVPAVLA 101 (135)
Q Consensus 93 v~~~Pt~~~ 101 (135)
+.++|++++
T Consensus 81 ~~g~Pt~v~ 89 (98)
T cd02972 81 VTGTPTFVV 89 (98)
T ss_pred CCCCCEEEE
Confidence 999999987
No 198
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.98 E-value=9.9e-05 Score=44.38 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=56.8
Q ss_pred hhhhhhhHHHHHHHhc-C-CCcEEEEEeCCCCHhHHHhCCCCc----cceEEEEe-CCeEEEEEecCC-CHHHHHHHHHh
Q psy6819 55 EPCHLLTPQLKKMLGN-S-DSIDLAIIDVEKNAELVHTFEVKA----VPAVLAVK-NGLVIDKFIGLI-ENEMIENMVSK 126 (135)
Q Consensus 55 ~~C~~~~~~~~~l~~~-~-~~v~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~-~g~~~~~~~g~~-~~~~l~~~i~~ 126 (135)
..-..+...+.++++. . +.+.|+.+|.+......+.||+.. +|++.++. ++ .-....+.. +.+.|.+|+++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHH
Confidence 4446778889999999 6 589999999998888999999984 99999884 34 222245667 88999999987
Q ss_pred h
Q psy6819 127 L 127 (135)
Q Consensus 127 ~ 127 (135)
.
T Consensus 110 f 110 (111)
T cd03073 110 F 110 (111)
T ss_pred h
Confidence 5
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.94 E-value=0.00017 Score=43.36 Aligned_cols=91 Identities=12% Similarity=0.160 Sum_probs=64.8
Q ss_pred HhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc----CCCcEEEEEeCCCCHhHHHhCCCCc--cceEEEEeCCe-EEEE
Q psy6819 38 VMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN----SDSIDLAIIDVEKNAELVHTFEVKA--VPAVLAVKNGL-VIDK 110 (135)
Q Consensus 38 ~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~~g~-~~~~ 110 (135)
+.+.+.+..+.|+++ ..-..+...+.++++. .+.+.|+.+|.+......+.||++. +|.+.+..... .-..
T Consensus 12 ~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~ 89 (111)
T cd03072 12 LTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFP 89 (111)
T ss_pred HhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCC
Confidence 334444555555532 2335667778887776 4569999999998888999999997 89999873322 1122
Q ss_pred -EecCCCHHHHHHHHHhhCCC
Q psy6819 111 -FIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 111 -~~g~~~~~~l~~~i~~~~~~ 130 (135)
..+..+.+.+.+|+++.++.
T Consensus 90 ~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 90 DFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred CCccccCHHHHHHHHHHHhcC
Confidence 45778899999999998765
No 200
>KOG1752|consensus
Probab=97.90 E-value=0.00029 Score=41.78 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH-hH----HHhCCCCccceEEEEeCCeEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA-EL----VHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-~~----~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
+|.|..+||++|+.+...|..+ ....+++.+|-+.+. ++ .+.-+-+.+|.+++ +|+.++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 7789999999999988888773 445566777665443 33 33335678898776 887663
No 201
>PTZ00062 glutaredoxin; Provisional
Probab=97.82 E-value=0.00025 Score=47.15 Aligned_cols=51 Identities=14% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHH----hCCCCccceEEEEeCCeEEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH----TFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 109 (135)
|+|++|+.....|.+. ++.+..+|++.+++..+ ..+-..+|.+++ +|+.++
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 7999999998888865 57788889887776533 335667888765 786653
No 202
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.75 E-value=0.00018 Score=52.79 Aligned_cols=56 Identities=14% Similarity=0.327 Sum_probs=43.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHH---Hh---------CCCCccceEEEEeCCeEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELV---HT---------FEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~---~~---------~~v~~~Pt~~~~~~g~~~ 108 (135)
|+.|..+||++|+..+..|.+. ++.+-.+|+++++... ++ .|.+.+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 7789999999999999888875 5888889998776422 22 46788999865 67544
No 203
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.64 E-value=0.0025 Score=37.13 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCcEEE-EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE-EE
Q psy6819 33 QFIKHVMNNPVPVIV-NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI-DK 110 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv-~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~ 110 (135)
++......-.+++.+ .|..+. .+|..+...++++++..+.+++-..+.+. ..|++.+..+|+.. -+
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIr 76 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIR 76 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEE
Confidence 333333333445544 555544 99999999999999987788776544322 46999988666332 47
Q ss_pred EecCCCHHHHHHHHHhhC
Q psy6819 111 FIGLIENEMIENMVSKLL 128 (135)
Q Consensus 111 ~~g~~~~~~l~~~i~~~~ 128 (135)
+.|...-.++..+|..++
T Consensus 77 F~GiP~GhEf~Slilai~ 94 (94)
T cd02974 77 FAGIPMGHEFTSLVLALL 94 (94)
T ss_pred EEecCCchhHHHHHHHhC
Confidence 889988999999987653
No 204
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00031 Score=53.74 Aligned_cols=79 Identities=14% Similarity=0.300 Sum_probs=62.4
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHhc-CCCcEEEEEeCCCCHhHHHhCC--------CCccc
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQ-L--KKMLGN-SDSIDLAIIDVEKNAELVHTFE--------VKAVP 97 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~-~~~v~~~~vd~~~~~~~~~~~~--------v~~~P 97 (135)
..+.|.. ....+||+++-+..+||+.|+.|... + .++++- +.++.-++||-++-|++-+.|. --++|
T Consensus 32 ~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 32 GEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred CHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 5566665 55668999999999999999998754 3 456655 7789999999999888766653 56899
Q ss_pred eEEEE-eCCeEEE
Q psy6819 98 AVLAV-KNGLVID 109 (135)
Q Consensus 98 t~~~~-~~g~~~~ 109 (135)
-.+|. ++|++..
T Consensus 111 LtVfLTPd~kPFf 123 (667)
T COG1331 111 LTVFLTPDGKPFF 123 (667)
T ss_pred eeEEECCCCceee
Confidence 88887 9999875
No 205
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0016 Score=41.46 Aligned_cols=107 Identities=11% Similarity=0.187 Sum_probs=67.4
Q ss_pred hcccceEecChhHH-HHHHhcCCCcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC--------------
Q psy6819 21 RKFKSYIIENNEQF-IKHVMNNPVPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE-------------- 82 (135)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~-------------- 82 (135)
...+++...+.+.- ...-.-.++++|++|| .++++-|-...-.++....+ ..++.++.|..|
T Consensus 8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L 87 (157)
T COG1225 8 DKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL 87 (157)
T ss_pred CcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 34455555544331 1111122567899999 67888898877777776655 447888888754
Q ss_pred -------CCHhHHHhCCCCc------------cceEEEE-eCCeEEEEEecCCC---HHHHHHHHHhh
Q psy6819 83 -------KNAELVHTFEVKA------------VPAVLAV-KNGLVIDKFIGLIE---NEMIENMVSKL 127 (135)
Q Consensus 83 -------~~~~~~~~~~v~~------------~Pt~~~~-~~g~~~~~~~g~~~---~~~l~~~i~~~ 127 (135)
.+..+++.|+|.. .++.+++ ++|++...+..... .+++.+.++++
T Consensus 88 ~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 88 TFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 3556788888733 3556666 78998887644322 45666665554
No 206
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00084 Score=45.68 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=29.2
Q ss_pred HHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 87 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
+++.++|.++|++++ +|+ .+.|..+.+++.+.|....
T Consensus 207 ~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 567789999999886 554 5778888899998887643
No 207
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.48 E-value=0.0022 Score=37.57 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=70.4
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCC--CHhHHHhCCCC----ccceE
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEK--NAELVHTFEVK----AVPAV 99 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~--~~~~~~~~~v~----~~Pt~ 99 (135)
.+.+..+|...+.-. ..++|.|..+--.. ......+.++++. .+.-+++.|||.. ...+|+++.|. --|..
T Consensus 5 ~i~d~KdfKKLLRTr-~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 5 DISDHKDFKKLLRTR-NNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred cccchHHHHHHHhhc-CcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 345667888766543 34666666554333 3334577888877 7788999999987 66799999998 55544
Q ss_pred E-EEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 100 L-AVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 100 ~-~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+ -|++|..-..+....+..++..|+++
T Consensus 83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCccccccchhhHHHHHHHhhC
Confidence 4 35999888888888888899888864
No 208
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.40 E-value=0.0035 Score=39.57 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=41.6
Q ss_pred EEEEEcC------CChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhH----HHhCCC----CccceEEEEeCCeEEE
Q psy6819 46 IVNFHAE------WCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL----VHTFEV----KAVPAVLAVKNGLVID 109 (135)
Q Consensus 46 vv~f~~~------~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v----~~~Pt~~~~~~g~~~~ 109 (135)
|+.+.++ +|++|+..+..|+.+ ++.+..+|++.++++ .+.++- ..+|.+++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 4455556 899999999999876 588999999877654 344454 67888765 776554
No 209
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.35 E-value=0.0035 Score=47.39 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=63.7
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE-EE
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI-DK 110 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~ 110 (135)
+++...+..-.+++-+.++.+.|.+|.++...++++++..+.+++-..+.+ ...|++.+..+|+.. -+
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~ 76 (517)
T PRK15317 8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVR 76 (517)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEE
Confidence 344444444456666666666899999999999999998778887553322 347999888766543 47
Q ss_pred EecCCCHHHHHHHHHhhCC
Q psy6819 111 FIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 111 ~~g~~~~~~l~~~i~~~~~ 129 (135)
+.|...-.|+..||..++.
T Consensus 77 f~g~P~g~Ef~s~i~~i~~ 95 (517)
T PRK15317 77 FAGIPMGHEFTSLVLALLQ 95 (517)
T ss_pred EEecCccHHHHHHHHHHHH
Confidence 8899899999999988764
No 210
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.27 E-value=0.011 Score=34.77 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=61.7
Q ss_pred eEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC
Q psy6819 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN 104 (135)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 104 (135)
..+.+.+++...+...+.+++|-|+..--. .....+.++++. .++..|+... ++.+.+.+++. .|++++++.
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCC
Confidence 456677778776651445566666655333 344567777777 4778886543 55677888765 688888844
Q ss_pred -CeEEEEE-ecCCCHHHHHHHHHh
Q psy6819 105 -GLVIDKF-IGLIENEMIENMVSK 126 (135)
Q Consensus 105 -g~~~~~~-~g~~~~~~l~~~i~~ 126 (135)
......+ .|..+.+.|.+||..
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHH
Confidence 3333345 677789999999874
No 211
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.26 E-value=0.0051 Score=46.50 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE-EEE
Q psy6819 33 QFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI-DKF 111 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~ 111 (135)
++...+..-.+++.+.++.+.|.+|.++...++++++..+.+++...+.+. ...|++.+..+|+.. -++
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f 78 (515)
T TIGR03140 9 QLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGIRF 78 (515)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccceEE
Confidence 344444333556666555557999999999999999988888886554332 356999888776532 478
Q ss_pred ecCCCHHHHHHHHHhhCCCC
Q psy6819 112 IGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 112 ~g~~~~~~l~~~i~~~~~~~ 131 (135)
.|...-.|+..||..++.-.
T Consensus 79 ~g~P~g~Ef~s~i~~i~~~~ 98 (515)
T TIGR03140 79 AGIPGGHEFTSLVLAILQVG 98 (515)
T ss_pred EecCCcHHHHHHHHHHHHhc
Confidence 89989999999998876443
No 212
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.15 E-value=0.021 Score=34.75 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=62.8
Q ss_pred ecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHH----hcCCCcEEEEEeCC-----CCHhHHHhCCC--Ccc
Q psy6819 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKML----GNSDSIDLAIIDVE-----KNAELVHTFEV--KAV 96 (135)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~----~~~~~v~~~~vd~~-----~~~~~~~~~~v--~~~ 96 (135)
..+.-.|+..+.. .+.++|.|=... |+-.. ...+.+++ ...+++-++.|-+. .|.+++++|++ +.+
T Consensus 8 ~LD~~tFdKvi~k-f~~~LVKFD~ay-PyGeK-hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 8 PLDELTFDKVIPK-FKYVLVKFDVAY-PYGEK-HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp EESTTHHHHHGGG-SSEEEEEEEESS---CHH-HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred eccceehhheecc-CceEEEEEeccC-CCcch-HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 3455678876655 477889887542 22111 23444444 33778999999875 57899999999 568
Q ss_pred ceEEEEe-CCeEEEEE--ecCCCHHHHHHHHHhh
Q psy6819 97 PAVLAVK-NGLVIDKF--IGLIENEMIENMVSKL 127 (135)
Q Consensus 97 Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~ 127 (135)
|.+.+|. +....-++ .|..+.+.|++|+...
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 9999995 44444456 7888999999999875
No 213
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.13 E-value=0.025 Score=35.25 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=62.9
Q ss_pred hcCCCcEEEEEEcCCChhhhhhhHHH---HHHHhc-CCCcEEEEEeCCCCH------------------hHHHhCCCCcc
Q psy6819 39 MNNPVPVIVNFHAEWCEPCHLLTPQL---KKMLGN-SDSIDLAIIDVEKNA------------------ELVHTFEVKAV 96 (135)
Q Consensus 39 ~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~-~~~v~~~~vd~~~~~------------------~~~~~~~v~~~ 96 (135)
.+..|+.+|+.+++.-..+..+...+ +.+.+- ..++.++.-|+.... ...+.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 44578999999998764444443322 222222 457888888876542 24566789999
Q ss_pred ceEEEE-eCC---eEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 97 PAVLAV-KNG---LVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 97 Pt~~~~-~~g---~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
|.+.++ +.. .++.+..|..+++++...+...++
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 999888 332 677899999999999988876543
No 214
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.12 E-value=0.0085 Score=38.66 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=51.4
Q ss_pred hhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCC-eEEEEEecC-CCHHHHHHHHHhhC
Q psy6819 60 LTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG-LVIDKFIGL-IENEMIENMVSKLL 128 (135)
Q Consensus 60 ~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~ 128 (135)
....+.++++. .+.+.|+.+. ++++++.+++.. |++++|+.+ +....+.|. .+.++|.+||....
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 45677888888 6679999988 777999999999 999999663 333457786 79999999998754
No 215
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.06 E-value=0.0063 Score=39.64 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy6819 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 87 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
.+.+++|.++|++++ +|+ ..+.|....+.+++.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 367789999999998 787 56789988999888763
No 216
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.00 E-value=0.0042 Score=40.40 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=24.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAII 79 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~v 79 (135)
+|..|.|+.|-...|.+.++..+ ...+.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 68999999999999999999988 555665544
No 217
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.83 E-value=0.0061 Score=33.60 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=47.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 101 (135)
+..|-+...+.+......+.++.++ .+...+-.||+.++|++++.++|-.+||++-
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 4445555568899988899988887 7789999999999999999999999999764
No 218
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.66 E-value=0.011 Score=33.82 Aligned_cols=72 Identities=24% Similarity=0.237 Sum_probs=57.9
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCC
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE 116 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 116 (135)
.++=.|.+..-+.++.....+.++.++ .+...+-.||+.++|++++.+++-++||++-. .-.+..++.|.++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeecccc
Confidence 344556677788999988899998887 66689999999999999999999999997643 3456677888764
No 219
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.66 E-value=0.054 Score=31.97 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=59.2
Q ss_pred EecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEe--
Q psy6819 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK-- 103 (135)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-- 103 (135)
.+.+.+++...+. .++++||-|+..--. .....+.++++. .++..|+... +..+.+.+++ .|++++|+
T Consensus 4 ~i~s~~~l~~f~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 4 ELRTEAEFEKFLS-DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred ccCCHHHHHHHhc-cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEech
Confidence 4556677776554 455666666655333 345667777777 4678886644 4567888888 67888882
Q ss_pred ----C-CeEEEEEecCCCHHHHHHHHHh
Q psy6819 104 ----N-GLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 104 ----~-g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+ ......+.|..+.+.|.+||..
T Consensus 75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 75 RLSNKFEDSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred hhhcccCcccccccCcCCHHHHHHHHHh
Confidence 1 1111246787788899999875
No 220
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.014 Score=34.14 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=40.8
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCC-CccceE-EEEeCCeEEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEV-KAVPAV-LAVKNGLVID 109 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~-~~~~~g~~~~ 109 (135)
|.|+.+......+.... -+.|..+|+-.++++.+.+.- ..+||+ -+|-+|+.+.
T Consensus 28 P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 28 PQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred CCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 78999888777776653 288999999999999887653 457776 3557898765
No 221
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=96.62 E-value=0.011 Score=36.47 Aligned_cols=64 Identities=19% Similarity=0.356 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCe-----------EEEEEecCCCHHHHHHHHHh
Q psy6819 58 HLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGL-----------VIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 58 ~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~ 126 (135)
+.....+.++....+. .++.-+|.+.++|+|+.+|++++.+++. ......|..+.+...+.+.+
T Consensus 39 ~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 39 KATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred HHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 4555556666555333 3444589999999999999999987664 35677888877766666653
No 222
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.59 E-value=0.014 Score=34.45 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCC
Q psy6819 43 VPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE 116 (135)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 116 (135)
..++=.|.+..-+.++.....+.++.++ .+...+-.||+.++|++++.++|-++||++-. .-.++.++.|.++
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDls 80 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDLS 80 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeecccc
Confidence 4456667788888999999999998887 66688999999999999999999999997643 3456677888754
No 223
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.018 Score=41.57 Aligned_cols=92 Identities=20% Similarity=0.179 Sum_probs=70.5
Q ss_pred hhHHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEE
Q psy6819 31 NEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 31 ~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
.++..+.+..- +...+=-+++-.|..|-.....++-.+-.+++++...||-....+-.+.-+|.++||+++ ||+..
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f- 180 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF- 180 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhh-
Confidence 34555555543 345666777889999999888888777669999999999877666677779999999875 88865
Q ss_pred EEecCCCHHHHHHHHHh
Q psy6819 110 KFIGLIENEMIENMVSK 126 (135)
Q Consensus 110 ~~~g~~~~~~l~~~i~~ 126 (135)
..|.++.+++...|..
T Consensus 181 -g~GRmtleeilaki~~ 196 (520)
T COG3634 181 -GQGRMTLEEILAKIDT 196 (520)
T ss_pred -cccceeHHHHHHHhcC
Confidence 4678888888877754
No 224
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.47 E-value=0.03 Score=38.03 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=34.7
Q ss_pred hcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeC
Q psy6819 39 MNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDV 81 (135)
Q Consensus 39 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~ 81 (135)
.++++|.|+.|.+-.||+=..-.+.+++++++ .+.+.|..|.+
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 35678999999999999999999999999998 43456665553
No 225
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.39 E-value=0.081 Score=32.91 Aligned_cols=73 Identities=14% Similarity=0.328 Sum_probs=55.4
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCc----cceEEEEeCCeEEEEEecCCCHHH
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKA----VPAVLAVKNGLVIDKFIGLIENEM 119 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~g~~~~~~ 119 (135)
.-++.+++|.|+=|..+...++.. ++.+-.+..++-..+.++|+|.. ==|.++ +|.. +.|-...+.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~---vEGHVPa~a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYY---VEGHVPAEA 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEE---EeccCCHHH
Confidence 357889999999999998887743 68888888888889999998843 224443 7844 557777888
Q ss_pred HHHHHHh
Q psy6819 120 IENMVSK 126 (135)
Q Consensus 120 l~~~i~~ 126 (135)
+..++.+
T Consensus 96 I~~ll~~ 102 (149)
T COG3019 96 IARLLAE 102 (149)
T ss_pred HHHHHhC
Confidence 8877765
No 226
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.34 E-value=0.012 Score=37.47 Aligned_cols=41 Identities=10% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCcEEEEEE-cCCChhhhhh-hHHHHHHHhc--CCCc-EEEEEeCC
Q psy6819 42 PVPVIVNFH-AEWCEPCHLL-TPQLKKMLGN--SDSI-DLAIIDVE 82 (135)
Q Consensus 42 ~~~~vv~f~-~~~C~~C~~~-~~~~~~l~~~--~~~v-~~~~vd~~ 82 (135)
++++||+|| +.||+.|... .+.+.+..++ ..++ .++.|..+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 345555555 8999999987 8888776666 4455 47766644
No 227
>KOG2640|consensus
Probab=96.32 E-value=0.0015 Score=45.55 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=66.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEe-CCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHH
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIID-VEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMI 120 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 120 (135)
..++-+.||+.||+..+...|.++-.......+....++ ...-+.+..+|++.+.|++.+. +-..-.++-|..+..++
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHHH
Confidence 346889999999999999999987766665555555543 2245678899999999998865 34444567788899999
Q ss_pred HHHHHhhCC
Q psy6819 121 ENMVSKLLP 129 (135)
Q Consensus 121 ~~~i~~~~~ 129 (135)
..+..++++
T Consensus 155 v~fy~~i~~ 163 (319)
T KOG2640|consen 155 VNFYTEITP 163 (319)
T ss_pred HHHHHhhcc
Confidence 999988775
No 228
>KOG2507|consensus
Probab=96.20 E-value=0.072 Score=39.07 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCcEEEEEEcCCChhhhhhhH-HH-HHHHhc--CCCcEEEEEeCCC--CHhHHHhCCCCccceEEEE-eCCeEEEEEecC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTP-QL-KKMLGN--SDSIDLAIIDVEK--NAELVHTFEVKAVPAVLAV-KNGLVIDKFIGL 114 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~-~~-~~l~~~--~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~ 114 (135)
.+.++|.|-+-.......+.. .| ...... ...+..++|+... ...+..-|.+-.+|+++++ .+|.++....|.
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeecc
Confidence 344555555555566666652 23 333222 3344444555432 3456778899999999999 899999999999
Q ss_pred CCHHHHHHHHHhhC
Q psy6819 115 IENEMIENMVSKLL 128 (135)
Q Consensus 115 ~~~~~l~~~i~~~~ 128 (135)
.+.++|..-|++.+
T Consensus 98 v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 98 VTADELASSIEKVW 111 (506)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999888887653
No 229
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.01 E-value=0.024 Score=38.25 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=36.0
Q ss_pred hHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCCCC
Q psy6819 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKT 133 (135)
Q Consensus 86 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 133 (135)
..+++.+|+++|+|++ +|+ ....|..+.+.+...|++++...+.
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhcccc
Confidence 3578899999999997 443 4578999999999999999876664
No 230
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=95.85 E-value=0.047 Score=32.89 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=42.9
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeC------------CeEEEEEe
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKN------------GLVIDKFI 112 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~------------g~~~~~~~ 112 (135)
+.+.|-.---+.=+.....+.++....+.. .++.-+|.+.++|+|+.+|++++.++ ........
T Consensus 25 ~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~ 100 (113)
T PF09673_consen 25 VVVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVY 100 (113)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEE
Confidence 334444433334444455556666553222 44455899999999999999998765 13334566
Q ss_pred cCCCHHHH
Q psy6819 113 GLIENEMI 120 (135)
Q Consensus 113 g~~~~~~l 120 (135)
|..+...-
T Consensus 101 Gdvsl~~a 108 (113)
T PF09673_consen 101 GDVSLDYA 108 (113)
T ss_pred ccccHHHH
Confidence 66655443
No 231
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.80 E-value=0.19 Score=29.90 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=70.0
Q ss_pred ChhHHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHhc---CCCcEEEEEeCCCCHhHHH----hCCCCc-cceEE
Q psy6819 30 NNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN---SDSIDLAIIDVEKNAELVH----TFEVKA-VPAVL 100 (135)
Q Consensus 30 ~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~~v~~~~vd~~~~~~~~~----~~~v~~-~Pt~~ 100 (135)
+++++.....+ -++..++.|--+.-+.-.++.+.+.++|+. ++++.|+-||-+.-|-+.. .|+|.- -|.+-
T Consensus 7 ~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIG 86 (120)
T cd03074 7 KPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIG 86 (120)
T ss_pred cHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCcee
Confidence 34444443432 256688889889999999999999999998 7889999999998876644 456542 48887
Q ss_pred EE--e-CCeEEEEEecC---CCHHHHHHHHHhhC
Q psy6819 101 AV--K-NGLVIDKFIGL---IENEMIENMVSKLL 128 (135)
Q Consensus 101 ~~--~-~g~~~~~~~g~---~~~~~l~~~i~~~~ 128 (135)
++ . +...-....+. .+.++|..||+..+
T Consensus 87 VV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 87 VVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 66 2 22232333333 57899999998764
No 232
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.76 E-value=0.013 Score=34.64 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH----hHHHhCCCCccceEEEE-eCCeEEEEE----ecCCCH
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA----ELVHTFEVKAVPAVLAV-KNGLVIDKF----IGLIEN 117 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~-~~g~~~~~~----~g~~~~ 117 (135)
..|+.++|+.|+.....+++. ++.|-.+|+.+++ ++.+-++-.+.+.--++ .+|...... ....+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~ 76 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSD 76 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCH
Confidence 568899999999998777764 5667777776533 23333333332222223 333332211 234567
Q ss_pred HHHHHHHHh
Q psy6819 118 EMIENMVSK 126 (135)
Q Consensus 118 ~~l~~~i~~ 126 (135)
+++.++|.+
T Consensus 77 ~e~~~~l~~ 85 (105)
T cd02977 77 EEALELMAE 85 (105)
T ss_pred HHHHHHHHh
Confidence 777777765
No 233
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.40 E-value=0.19 Score=27.18 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=37.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC-CHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK-NAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
+.|+.+||++|.+..-.+.+. +-.+.+..+|... .+++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~---gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA---GITVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc---CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 357789999999887666554 2345566666543 345656556678999863 346554
No 234
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.07 Score=29.54 Aligned_cols=57 Identities=21% Similarity=0.480 Sum_probs=39.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC--------------CHhH--HHhCCCCccceEEEEeCCeEEE
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK--------------NAEL--VHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~--------------~~~~--~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
+.|++.-||.|..+...++++ ++.+-.|++.. .+++ .+..+--++|+++. .+|+.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-----~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-----NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-----CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 679999999999988888777 35555555432 2322 45566678899775 6676653
No 235
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=95.24 E-value=0.071 Score=36.61 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=36.9
Q ss_pred HhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCC-CCccceEEEE
Q psy6819 38 VMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFE-VKAVPAVLAV 102 (135)
Q Consensus 38 ~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~~~~ 102 (135)
+..++|+.+++..+.||++|....=.+--...+.+++.+.....+. .+ -..+|+++|.
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEEe
Confidence 4466899999999999999998763333333335556444443333 12 1467887765
No 236
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.24 E-value=0.33 Score=28.88 Aligned_cols=95 Identities=6% Similarity=0.058 Sum_probs=58.0
Q ss_pred ceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEe
Q psy6819 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103 (135)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 103 (135)
...+.+.+++...+...++.+||-|+...-. .....+.++++. .++..|+... +..+.+++++.. |.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEEC
Confidence 3456677888876666535666666655333 345567778877 5778886544 456778888764 5566662
Q ss_pred -------CCeEEEEEecC-CCHHH-HHHHHHh
Q psy6819 104 -------NGLVIDKFIGL-IENEM-IENMVSK 126 (135)
Q Consensus 104 -------~g~~~~~~~g~-~~~~~-l~~~i~~ 126 (135)
-..-...+.|. .+.++ |.+||+.
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 11111234555 45545 9998864
No 237
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.99 E-value=0.06 Score=33.31 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=26.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~ 85 (135)
+..|+.++|+.|+.....+++. ++.+-.+|+..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 4577899999999988777664 5667777765443
No 238
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=94.97 E-value=0.015 Score=32.94 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=44.0
Q ss_pred EEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEE
Q psy6819 49 FHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100 (135)
Q Consensus 49 f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 100 (135)
|-+..-+.+......++.+.+. ..+..+-.||+..+|++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 3344456677788888888888 778999999999999999999999999976
No 239
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.94 E-value=0.06 Score=32.53 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=27.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~ 86 (135)
..|+.++|+.|+.....+++- ++.+-.+|+..++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCChh
Confidence 467899999999988777773 57788888876553
No 240
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.81 E-value=0.05 Score=32.61 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=26.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~ 85 (135)
..|+.++|+.|+.....|++. ++.|-.+|+..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCc
Confidence 467889999999988777764 5778888876544
No 241
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.77 E-value=0.34 Score=26.71 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC----HhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHH
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN----AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIEN 122 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 122 (135)
..++.++|++|.+..-.+.+. ++.+-.++++.. +++.+.-+-..+|+++.-.+|..+. +...+.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~------es~~I~~ 71 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF------ESADIVK 71 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE------cHHHHHH
Confidence 456678999999888777665 344444555433 2333333456789875322354332 3444555
Q ss_pred HHHh
Q psy6819 123 MVSK 126 (135)
Q Consensus 123 ~i~~ 126 (135)
++.+
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 5543
No 242
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=94.47 E-value=0.92 Score=30.35 Aligned_cols=90 Identities=21% Similarity=0.329 Sum_probs=56.9
Q ss_pred CCCcEEEEEEcCCCh-hhhhhhHHHHHHHhc-----CCCcEEEEEeCCCC-----------------------------H
Q psy6819 41 NPVPVIVNFHAEWCE-PCHLLTPQLKKMLGN-----SDSIDLAIIDVEKN-----------------------------A 85 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~-~C~~~~~~~~~l~~~-----~~~v~~~~vd~~~~-----------------------------~ 85 (135)
.+++++|+|.=..|+ .|-.....+..+.++ ..++.++.|.+|.. .
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 367888888866664 466555544443332 55676666665421 1
Q ss_pred hHHHhCCCCc---------------cceEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 86 ELVHTFEVKA---------------VPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 86 ~~~~~~~v~~---------------~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.++++|+|.. ...++++ .+|+.+..+.+..+++++.+.+++++.+
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 2455555542 1234444 7999998888777789999988887754
No 243
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.46 E-value=0.061 Score=31.94 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~ 85 (135)
..|+.++|+.|+.....|++- ++.+-.+|+.+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCC
Confidence 568899999999988777764 5777777776554
No 244
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.42 E-value=0.11 Score=31.21 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEe
Q psy6819 43 VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIID 80 (135)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 80 (135)
|.++|.|..|-|+-|+.....+.++..++ .+.+||
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVN 36 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVN 36 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEE
Confidence 45899999999999999999997776553 355555
No 245
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.11 Score=34.24 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=35.7
Q ss_pred HhHHHhCCCCccceEEEEeCCeEEEEEec--CCCHHHHHHHHHhhCC
Q psy6819 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIG--LIENEMIENMVSKLLP 129 (135)
Q Consensus 85 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~~ 129 (135)
..+++++++.++||+++-.||++.-.-.| ..+.+.+..++...+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 35789999999999999999998776667 4567788877776543
No 246
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.28 E-value=0.42 Score=25.71 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=31.7
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
.++.++|++|.+.+-.+.... -.+....++.+......+..+-..+|++.. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~g---l~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKN---IPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcC---CCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE
Confidence 466789999998876666542 123333444333333334444566888753 33644
No 247
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.04 E-value=0.52 Score=25.79 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=40.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC--CHhHHHhCCCCccceEEEEe--CCeEEEEEecCCCHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK--NAELVHTFEVKAVPAVLAVK--NGLVIDKFIGLIENEMIE 121 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~ 121 (135)
+..|+.+.|++|+..+-.+... ++.+-.++.+. .+.+ +.-+...+|++..-. +|..+. +...+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cHHHHH
Confidence 4567889999999988766665 23343444432 2233 333456799887532 254432 344455
Q ss_pred HHHHhhC
Q psy6819 122 NMVSKLL 128 (135)
Q Consensus 122 ~~i~~~~ 128 (135)
+.+.+.+
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 5665543
No 248
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=93.94 E-value=1.2 Score=29.84 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=51.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC------------------HhHHHhCCCC--ccceEEEEeCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN------------------AELVHTFEVK--AVPAVLAVKNG 105 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~------------------~~~~~~~~v~--~~Pt~~~~~~g 105 (135)
|=.|.+..|..|-.....|.+++.+. ++......+|-. ...++.++.. .+|.+++ ||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARP-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHT-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCC-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 44677889999999999999999885 676666655421 2345666655 4788887 88
Q ss_pred eEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 106 LVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
..- ..|. +...+...|......
T Consensus 79 ~~~--~~g~-~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RVGS-DRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EETT--HHHHHHHHHHHHHT
T ss_pred eee--eecc-CHHHHHHHHHHhhcc
Confidence 753 4565 788888888776544
No 249
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.83 E-value=0.18 Score=30.39 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=25.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
+..|+.++|+.|+.....+++. ++.+-.+|+..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4467789999999988777764 466777777554
No 250
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.54 E-value=0.16 Score=31.48 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=24.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK 83 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~ 83 (135)
+..|+.++|+.|+.....|++- ++.+-.+|+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 5678899999999988777664 46666666543
No 251
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=93.15 E-value=0.25 Score=32.87 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy6819 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 83 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
-+|.+.++|+|+.+|++++. .+....+..|..+...-.+.+.
T Consensus 150 IDP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred ECHHHHHhcCCccccEEEEE-cCCCCCEEEecccHHHHHHHHH
Confidence 37899999999999999986 3444567888887766555554
No 252
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.01 E-value=0.69 Score=24.03 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=35.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH--hHHHhCCCCccceEEEEeCCeEE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA--ELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.|+.++|+.|....-.++... -.+....++..... .+.+..+...+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG---LPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC---CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 577889999998777666652 23444555543322 2455667778998764 46543
No 253
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=92.98 E-value=0.15 Score=33.45 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=28.3
Q ss_pred HhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy6819 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 85 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 124 (135)
...+.+.||.++|++++ +|+. ...|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 44577889999999987 6653 367888888888765
No 254
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.59 E-value=0.9 Score=24.30 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=35.8
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC----CCHhHHHhCCCCccceEEEEeCCeE
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE----KNAELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
..|+.++|++|+...-.+.... -......++.. ..+++.+......+|++.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~---l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG---IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC---CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCE
Confidence 3577789999999887766552 23444555542 2345555556678899864 34544
No 255
>KOG2792|consensus
Probab=92.42 E-value=0.5 Score=32.63 Aligned_cols=89 Identities=11% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCcEEEEEEcCCChh-hhhhhHHHHHHHhc---CCCc----EEEEEeCCCC--------------------------HhH
Q psy6819 42 PVPVIVNFHAEWCEP-CHLLTPQLKKMLGN---SDSI----DLAIIDVEKN--------------------------AEL 87 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~-C~~~~~~~~~l~~~---~~~v----~~~~vd~~~~--------------------------~~~ 87 (135)
++-++++|.=+.||. |-.....+..+.++ ..++ .|+.+|-+.+ ..+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 566889999888863 65544444433332 2222 4566663221 235
Q ss_pred HHhCCCCcc--c-----------eEEEE---eCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 88 VHTFEVKAV--P-----------AVLAV---KNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 88 ~~~~~v~~~--P-----------t~~~~---~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
|+.|.|.-- | ++++| .+|+.+..+--..+.+++.+.|.+.+.+
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 777776432 2 34444 7899888666677899998888776544
No 256
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=92.11 E-value=1.1 Score=24.39 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=49.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC-CHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK-NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
.++.++|++|.+..-.++... -...+..++... .+.+.+...-..+|++. .+|..+. +-..+.+++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~---i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG---IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT---EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcC---CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHHHH
Confidence 367899999999876665542 245566666554 35666666777899987 5687554 56677777777
Q ss_pred hCCC
Q psy6819 127 LLPK 130 (135)
Q Consensus 127 ~~~~ 130 (135)
....
T Consensus 70 ~~~~ 73 (75)
T PF13417_consen 70 RYPG 73 (75)
T ss_dssp HSTS
T ss_pred HcCC
Confidence 6654
No 257
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=91.93 E-value=0.46 Score=32.31 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=34.3
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHH----hc-CCCcEEEEEeCC
Q psy6819 40 NNPVPVIVNFHAEWCEPCHLLTPQLKKML----GN-SDSIDLAIIDVE 82 (135)
Q Consensus 40 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~----~~-~~~v~~~~vd~~ 82 (135)
..+.++||.+...+|..|..-...++.|. ++ ..+|.|..||--
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 44788999999999999998777776554 44 778999999943
No 258
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=91.82 E-value=0.38 Score=29.82 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=24.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
+..|+.++|+.|+.....+++- ++.|-.+|+..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 4567889999999987666653 566777776543
No 259
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=91.06 E-value=1.5 Score=23.61 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=35.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC----CHhHHHhCCCCccceEEEEeCCeE
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK----NAELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
..|+.+.|+.|+...-.+... +-.+....+|... .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~---gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL---GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc---CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 357889999999877666654 2335555565432 355666656678999863 4543
No 260
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=91.05 E-value=1.2 Score=28.78 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=30.8
Q ss_pred CCCcEEEEEEcCCC-hhhhhhhHHHHHHHhc----CCCcEEEEEeCCC
Q psy6819 41 NPVPVIVNFHAEWC-EPCHLLTPQLKKMLGN----SDSIDLAIIDVEK 83 (135)
Q Consensus 41 ~~~~~vv~f~~~~C-~~C~~~~~~~~~l~~~----~~~v~~~~vd~~~ 83 (135)
.+++++|.|.=..| ..|-.....+.++.+. ..++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 36888999988888 5687766666555544 4578898888873
No 261
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=90.75 E-value=0.56 Score=27.90 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=38.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCC--ccceEEE-EeCCe
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVK--AVPAVLA-VKNGL 106 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~-~~~g~ 106 (135)
.||..+|+.|......+.+.. ....+.|+.+......++.+.+++. ..-+.+. ..+|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 389999999999988887772 2445666666434444455666654 3444454 47786
No 262
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=90.71 E-value=2 Score=28.86 Aligned_cols=78 Identities=13% Similarity=0.272 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCcEEEEEE-----cCCChhhhhhhHHHHHHHh-c-CCCcEEEEEeCCC---------------------C
Q psy6819 33 QFIKHVMNNPVPVIVNFH-----AEWCEPCHLLTPQLKKMLG-N-SDSIDLAIIDVEK---------------------N 84 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~-----~~~C~~C~~~~~~~~~l~~-~-~~~v~~~~vd~~~---------------------~ 84 (135)
.+.+.....+..+|.+|. ..-|+-|..+...++.... . ..++.|+.|.-.. .
T Consensus 59 ~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~g 138 (211)
T PF05988_consen 59 SLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYG 138 (211)
T ss_pred cHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCC
Confidence 345545555666777777 5679999999888844333 3 5569999888432 2
Q ss_pred HhHHHhCCC-----CccceEEEE-eCCeEEEE
Q psy6819 85 AELVHTFEV-----KAVPAVLAV-KNGLVIDK 110 (135)
Q Consensus 85 ~~~~~~~~v-----~~~Pt~~~~-~~g~~~~~ 110 (135)
..+...|++ ...|.+-+| ++|..+.+
T Consensus 139 s~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 139 SDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred CcccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 234455666 567888777 66555543
No 263
>KOG0911|consensus
Probab=90.30 E-value=1.8 Score=29.36 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=39.6
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCC-CccceE-EEEeCCeEEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEV-KAVPAV-LAVKNGLVID 109 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~-~~~~~g~~~~ 109 (135)
|.|+.++.....++.. ++.+...|+-.+.++.+.+.. ..+||+ -+|-+|+.++
T Consensus 152 P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred ccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 6788888888777776 577999999999988776653 456776 3456887654
No 264
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=90.17 E-value=0.35 Score=31.35 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=25.3
Q ss_pred hHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy6819 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 86 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 124 (135)
..++++||.++|++++ +|+ .+.|....+.+...+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4577889999999997 785 346776677666554
No 265
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.15 E-value=3 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=34.3
Q ss_pred CCCcEEEEEeCCCCHh----------HHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 71 SDSIDLAIIDVEKNAE----------LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 71 ~~~v~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
..++.+.+.|+..+|. +.+.-|...+|-+++ +|+++. .-.+.+.++|.+|+.-
T Consensus 38 ~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 38 EQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWLGI 100 (123)
T ss_dssp HTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHHT-
T ss_pred hCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHhCC
Confidence 4589999999987764 234457889998887 999875 3445689999998853
No 266
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=90.10 E-value=3.1 Score=25.77 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=51.3
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCCChhhh-hhhHHHHH-HHhcCCCcEEEEEeCCCCHhH---HHhCC---CCc
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCH-LLTPQLKK-MLGNSDSIDLAIIDVEKNAEL---VHTFE---VKA 95 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~-~~~~~~~~-l~~~~~~v~~~~vd~~~~~~~---~~~~~---v~~ 95 (135)
.-.++.+.++.+..+.+..+.++|.. .+-|+=-. ..+|.... +......=.++.|=...+.+. ++.|= -.+
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPS 95 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPS 95 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS---
T ss_pred CccccCCHHHHHHHHhCCCCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCC
Confidence 44577789999988885555555544 45575333 33555543 332321223333333333322 33332 356
Q ss_pred cceEEEEeCCeEEEEEe----cCCCHHHHHHHHHhh
Q psy6819 96 VPAVLAVKNGLVIDKFI----GLIENEMIENMVSKL 127 (135)
Q Consensus 96 ~Pt~~~~~~g~~~~~~~----g~~~~~~l~~~i~~~ 127 (135)
-|++.+|++|++++-.. ...+.+++.+-|...
T Consensus 96 SPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 96 SPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 78999999999998433 224677776666544
No 267
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=88.81 E-value=2.9 Score=23.67 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=37.3
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-HhHHHhCCCCccceEEEEeCCeEE
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-AELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.+..++.+.|++|....-.+... +-.+.+..++.... +.+.+......+|++.. .+|..+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~---gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~~l 78 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAK---NIPHEVININLKDKPDWFLEKNPQGKVPALEI-DEGKVV 78 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHc---CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCCEE
Confidence 45567788899999877665554 22355556665443 33555556678999874 325443
No 268
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=88.00 E-value=5.2 Score=25.67 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHhCCCCcc-ceEEEE-eCCeEEEEEecCCCHHHHHHHHH
Q psy6819 87 LVHTFEVKAV-PAVLAV-KNGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 87 ~~~~~~v~~~-Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
+...|+...- -+++++ ++|++.+...|.++.+++.+.|.
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 4455555433 345555 99999999999999999988775
No 269
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=87.63 E-value=9 Score=27.95 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=65.7
Q ss_pred cceEecChhHHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHhc---CCCcEEEEEeCCCCHhHH----HhCCCCc
Q psy6819 24 KSYIIENNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN---SDSIDLAIIDVEKNAELV----HTFEVKA 95 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~~v~~~~vd~~~~~~~~----~~~~v~~ 95 (135)
+...-.+.+++.....+ -++..+|.|-...-+.-.++...+.++++. ++++.++.||-+.-|-+. +.|+|.-
T Consensus 249 ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl 328 (383)
T PF01216_consen 249 PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDL 328 (383)
T ss_dssp -SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-T
T ss_pred hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccc
Confidence 44444566665554443 366788888888999999999999999987 778999999999888664 4456652
Q ss_pred -cceEEEE--eCCeEEE-EEec---CCCHHHHHHHHHhhCCCC
Q psy6819 96 -VPAVLAV--KNGLVID-KFIG---LIENEMIENMVSKLLPKD 131 (135)
Q Consensus 96 -~Pt~~~~--~~g~~~~-~~~g---~~~~~~l~~~i~~~~~~~ 131 (135)
-|.+-+. ....-+. ...+ ..+.+++..||+..++.+
T Consensus 329 ~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~ 371 (383)
T PF01216_consen 329 SRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGK 371 (383)
T ss_dssp TS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTC
T ss_pred cCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCC
Confidence 4988776 3333222 2222 236899999999988654
No 270
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=87.38 E-value=3 Score=22.22 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=34.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-HhHHHhCCCCccceEEEEeCCeE
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-AELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
..++.++|+.|+...-.++... -......+|.... +++.+......+|++. .+|..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 58 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG---VSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV 58 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC---CccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 4577899999999877665542 2344444554433 4455555567899764 34543
No 271
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=86.72 E-value=1.4 Score=26.45 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=24.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
+..|+.+.|..|+.....+++- ++.+-.+|+-.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC
Confidence 4568889999999987666654 466777776543
No 272
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=84.63 E-value=11 Score=26.12 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=37.9
Q ss_pred hcCCCcEEEEEEcCC------ChhhhhhhHHHHHHHhcCC-CcEEEEEeCCCCHhHHHh----CCCCc
Q psy6819 39 MNNPVPVIVNFHAEW------CEPCHLLTPQLKKMLGNSD-SIDLAIIDVEKNAELVHT----FEVKA 95 (135)
Q Consensus 39 ~~~~~~~vv~f~~~~------C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~----~~v~~ 95 (135)
.+-++++-|.+|.+. -..-+.....|++.+...+ ++++-.+|.+.++...++ +|+..
T Consensus 21 ~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 21 KSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 333556665555543 4444555666677776644 899999999887777666 77766
No 273
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=84.42 E-value=8.5 Score=24.68 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.0
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 99 VLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 99 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+++-++|+++.|+.-...++++...|+.+++
T Consensus 131 FLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 131 FLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred EEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 3444899999999998889999999988875
No 274
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=84.36 E-value=7.9 Score=24.25 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=48.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCcc--ceEEEEeCCeEEE
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAV--PAVLAVKNGLVID 109 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~--Pt~~~~~~g~~~~ 109 (135)
-+++-.|.+|.-.|+.|-.....+.+. .....+.|+.+..+....+.+..++..- =++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~-D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRR-DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHh-ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 356778999999999999966555443 1255789999888887777777776532 3555558887653
No 275
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=84.14 E-value=1.8 Score=26.02 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
..|+.+.|..|++....+++. ++.+-.+|+-++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC
Confidence 468889999999988777764 566777776544
No 276
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=83.65 E-value=2 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcC-CCcEEE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNS-DSIDLA 77 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~-~~v~~~ 77 (135)
|.+|+.+.|++|-...+.++++.++. .++.+-
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEE
Confidence 67889999999999999999998873 344433
No 277
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=83.08 E-value=2.1 Score=25.59 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=24.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
..|+.+.|..|++....+++- ++.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC
Confidence 468889999999987666654 566777776543
No 278
>KOG1422|consensus
Probab=80.97 E-value=14 Score=24.90 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=47.3
Q ss_pred CChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhC-CCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 53 WCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTF-EVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 53 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
.|+.|+.+.-.+. .....+++-.||+...++..+.. .-...|.+.+ +|+.+ .+...++++|++.+...
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~------tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWV------TDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCcee------ccHHHHHHHHHHhcCCC
Confidence 4778877765555 33447889999999887776544 4455676654 45332 36778888888887765
Q ss_pred CC
Q psy6819 132 KT 133 (135)
Q Consensus 132 ~~ 133 (135)
+.
T Consensus 89 ~~ 90 (221)
T KOG1422|consen 89 KL 90 (221)
T ss_pred CC
Confidence 53
No 279
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.09 E-value=3.9 Score=26.48 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=17.4
Q ss_pred HhHHHhCCCCccceEEEEeCCe
Q psy6819 85 AELVHTFEVKAVPAVLAVKNGL 106 (135)
Q Consensus 85 ~~~~~~~~v~~~Pt~~~~~~g~ 106 (135)
...+.+++|.++||+++...+.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3457788999999999886554
No 280
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=79.00 E-value=8.9 Score=26.37 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=54.1
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEE--EEeCCC----------------CHhHHHhCCCCccceEEEEeCCe
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLA--IIDVEK----------------NAELVHTFEVKAVPAVLAVKNGL 106 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~--~vd~~~----------------~~~~~~~~~v~~~Pt~~~~~~g~ 106 (135)
+|=.|.+.-|..|-.....+.+++.+.+ +.-. -||+.+ ...+.+.|+-++++|--.+-||+
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~~~-vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADDPG-VLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccCCC-EEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 5556667889999999999999988744 3333 344332 23467788888876666666886
Q ss_pred EEEEEecCCCHHHHHHHHHhhC
Q psy6819 107 VIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 107 ~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
.. ..|. +..++.+.|...-
T Consensus 123 ~~--~~Ga-d~~~i~~~i~a~~ 141 (261)
T COG5429 123 VH--ANGA-DPGAIEDAIAAMA 141 (261)
T ss_pred hh--hcCC-CHHHHHHHHHHhh
Confidence 53 3454 7788888776543
No 281
>KOG1364|consensus
Probab=78.68 E-value=3.9 Score=29.58 Aligned_cols=59 Identities=14% Similarity=0.310 Sum_probs=45.4
Q ss_pred CCCcEEEEEeCCCCHhHHHhCCCCccceEEEE--eCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 71 SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV--KNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 71 ~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
....-.+..|......+..-|.+..+|.+.++ ..|+.+++..|...++++...+.+.+.
T Consensus 130 k~~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 130 KQRWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred cceEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 33444556666677778889999999988877 789999999898888888777776654
No 282
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=77.72 E-value=5.2 Score=24.25 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=22.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV 81 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 81 (135)
+-.|+.+.|..|+.....+++.. +.+-.+|+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g-----i~~~~~~y 33 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG-----IEYTFIDY 33 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC-----CCcEEEEe
Confidence 56788999999999888777753 44444544
No 283
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=77.09 E-value=6.1 Score=22.13 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=22.1
Q ss_pred ccceEEEE-eCCeEEEEEe-cCCCHHHHHHHHHhhC
Q psy6819 95 AVPAVLAV-KNGLVIDKFI-GLIENEMIENMVSKLL 128 (135)
Q Consensus 95 ~~Pt~~~~-~~g~~~~~~~-g~~~~~~l~~~i~~~~ 128 (135)
.-|+++++ .+|+...++. ..++.+++.+++.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 34899998 6888666444 5579999999998653
No 284
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=76.29 E-value=9.7 Score=25.04 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=55.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCC-----CCccceEEEE-eCCeEEEEEecCCCHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFE-----VKAVPAVLAV-KNGLVIDKFIGLIENEM 119 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~-----v~~~Pt~~~~-~~g~~~~~~~g~~~~~~ 119 (135)
.|..++. =+.-+.|...|+.++.....++.+.|.|...+.+.+.+. +...|...+. -+|+++.--.|.-+...
T Consensus 10 AiEIHT~-~gr~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~a 88 (183)
T PF12617_consen 10 AIEIHTQ-VGRLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRA 88 (183)
T ss_pred EEEEecC-CCccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHH
Confidence 3444443 345567788888888887789999999998877655543 3446665555 78998876666655555
Q ss_pred HHHHHHhhCCC
Q psy6819 120 IENMVSKLLPK 130 (135)
Q Consensus 120 l~~~i~~~~~~ 130 (135)
-.++-++++..
T Consensus 89 aV~l~~~v~~~ 99 (183)
T PF12617_consen 89 AVKLAQKVLSA 99 (183)
T ss_pred HHHHHHHHhhc
Confidence 55555555533
No 285
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=74.02 E-value=17 Score=21.97 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCChhhhhhhHHHHHHHhc--CCCcEEEEEeCC-CCH-----------hHHHhCCCCccc-eEEEE-eCCeEEEEEecCC
Q psy6819 52 EWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVE-KNA-----------ELVHTFEVKAVP-AVLAV-KNGLVIDKFIGLI 115 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~-~~~-----------~~~~~~~v~~~P-t~~~~-~~g~~~~~~~g~~ 115 (135)
+..+.-+.....+..-... ..++.++.+--+ ... .+.++|++..-. +++++ ++|.+-.+...+.
T Consensus 20 ~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~ 99 (118)
T PF13778_consen 20 ADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPI 99 (118)
T ss_pred CCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCC
Confidence 4555566666666653222 446666666322 222 678888865322 34444 9999988899999
Q ss_pred CHHHHHHHHHhh
Q psy6819 116 ENEMIENMVSKL 127 (135)
Q Consensus 116 ~~~~l~~~i~~~ 127 (135)
+.+++-..|+..
T Consensus 100 ~~~~lf~~ID~M 111 (118)
T PF13778_consen 100 DPEELFDTIDAM 111 (118)
T ss_pred CHHHHHHHHhCC
Confidence 999999988764
No 286
>PRK10853 putative reductase; Provisional
Probab=72.27 E-value=7.1 Score=23.66 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=24.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
+..|+.+.|..|+.....|++- ++.+-.+|+-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC
Confidence 4567789999999988777754 566777776543
No 287
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=72.26 E-value=9.4 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=23.7
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 82 (135)
.+..++.+.|..|+.....|++- ++.+-.+|+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS-----GHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEecc
Confidence 35667789999999988777664 4555666643
No 288
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=72.14 E-value=9.6 Score=22.54 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCH
Q psy6819 49 FHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85 (135)
Q Consensus 49 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~ 85 (135)
|+.+.|..|+.....+++- ++.+-.+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCC
Confidence 5678999999988877764 5778888887654
No 289
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=71.98 E-value=17 Score=21.01 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCHhHHHhC--------CCCccceEEEEeCCeEEE
Q psy6819 71 SDSIDLAIIDVEKNAELVHTF--------EVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 71 ~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g~~~~ 109 (135)
..+|.|-.+|++.+++..+.+ +-..+|.+++ +|+.++
T Consensus 28 ~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 28 AKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred HCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 336899999998877654332 2356677653 665443
No 290
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=71.96 E-value=8 Score=21.89 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=23.6
Q ss_pred ceEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 97 PAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 97 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
.++.+|.+|+.+ ..|..+.+++.+.+++++
T Consensus 50 ~t~~IF~sGki~--itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 50 ATVLIFSSGKIV--ITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp EEEEEETTSEEE--EEEESSHHHHHHHHHHHH
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 578888999986 568888888888777653
No 291
>KOG2244|consensus
Probab=71.81 E-value=8 Score=30.05 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=49.7
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHhc-CCCcEEEEEeCCCCHhHHH--------hCCCCccc
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQ-L--KKMLGN-SDSIDLAIIDVEKNAELVH--------TFEVKAVP 97 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~-~~~v~~~~vd~~~~~~~~~--------~~~v~~~P 97 (135)
..+.|+ ...++++|+++-..-+.|..|..|... | ++.++. ..++.-++||-++.|++-+ ..+--++|
T Consensus 101 gqeaf~-kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFN-KARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHH-HHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 334455 466678899999999999999988653 3 334544 5567777788777776544 34667788
Q ss_pred eEEEE
Q psy6819 98 AVLAV 102 (135)
Q Consensus 98 t~~~~ 102 (135)
.-++.
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 76665
No 292
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=71.79 E-value=29 Score=23.63 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=48.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENM 123 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 123 (135)
+=.|....|..|-.+...++ ++ -++++| ++....+.++-+-+|=++|.+++ +|+.+ +.++.++++++..
T Consensus 13 VkI~~HktC~ssy~Lf~~L~---nkgll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~ 83 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLE---NKGLLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESI 83 (265)
T ss_pred EEEEEecchHHHHHHHHHHH---hcCCCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHH
Confidence 44455667888877655444 33 445665 45555666666667889998764 89876 4677788888887
Q ss_pred HHhh
Q psy6819 124 VSKL 127 (135)
Q Consensus 124 i~~~ 127 (135)
+...
T Consensus 84 ~~G~ 87 (265)
T COG5494 84 LSGQ 87 (265)
T ss_pred HcCc
Confidence 7653
No 293
>PRK10026 arsenate reductase; Provisional
Probab=70.18 E-value=10 Score=23.88 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=23.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 82 (135)
+..++.+.|..|+.....|++- ++.|-.+|+-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 5567789999999988777664 4666666653
No 294
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=68.94 E-value=16 Score=19.69 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=35.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC----CHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK----NAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
..++.+.|+.|....-.+.+. +-...+..+|... .+++.+.-.-..+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~---gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK---GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc---CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 457778899997776444444 3346666776532 23455544556789986 367654
No 295
>KOG0912|consensus
Probab=68.75 E-value=36 Score=24.64 Aligned_cols=106 Identities=8% Similarity=0.097 Sum_probs=59.1
Q ss_pred cceEecChhHHHHHHhcCCCcEEEEEEcCCChhhhh-hhHHH-HHHHhcCCCcEEEEEeCCCCHhHHHhCC--CCccceE
Q psy6819 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHL-LTPQL-KKMLGNSDSIDLAIIDVEKNAELVHTFE--VKAVPAV 99 (135)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~-~~~~~-~~l~~~~~~v~~~~vd~~~~~~~~~~~~--v~~~Pt~ 99 (135)
+.+...|.++..+ +...+.|.+|+|+.+......+ +...+ +++..+...+.+...|...-..-...+| -...|.+
T Consensus 210 pLVREiTFeN~EE-LtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPvi 288 (375)
T KOG0912|consen 210 PLVREITFENAEE-LTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVI 288 (375)
T ss_pred hhhhhhhhccHHH-HhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEE
Confidence 4444556566555 4456789999999887655543 34333 3454444458888888775444344443 2345665
Q ss_pred EEE--eCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 100 LAV--KNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 100 ~~~--~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.+- +..-+-..+.....+..|++|+.++.+.
T Consensus 289 aIDsF~Hmylfp~f~di~~pGkLkqFv~DL~sg 321 (375)
T KOG0912|consen 289 AIDSFRHMYLFPDFNDINIPGKLKQFVADLHSG 321 (375)
T ss_pred EeeccceeeecCchhhhcCccHHHHHHHHHhCc
Confidence 532 1111111222223455788888877543
No 296
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=68.70 E-value=15 Score=19.27 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=34.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC----CHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK----NAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.|+.+.|+.|....-.+.... -......++... .+.+.+......+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~---~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLG---IPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcC---CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 577889999998776665542 234455555432 234444444567899864 46543
No 297
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=67.73 E-value=11 Score=22.74 Aligned_cols=49 Identities=12% Similarity=0.362 Sum_probs=35.8
Q ss_pred ChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-HhHHHhCC--CCccceEEEE
Q psy6819 54 CEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-AELVHTFE--VKAVPAVLAV 102 (135)
Q Consensus 54 C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-~~~~~~~~--v~~~Pt~~~~ 102 (135)
|++|..+...+...-.....+.+.+|+...- ..+....| -++.|.+++-
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 9999999888877666666788999997654 33444444 3688998864
No 298
>COG3411 Ferredoxin [Energy production and conversion]
Probab=66.84 E-value=18 Score=19.44 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=23.6
Q ss_pred cceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 96 VPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 96 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
=|++++|.+|. ..+..+.+...+.+++.+..
T Consensus 17 gPvl~vYpegv----WY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEGV----WYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCCe----eEeccCHHHHHHHHHHHHhC
Confidence 39999999992 34456888888888887654
No 299
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=65.67 E-value=37 Score=22.63 Aligned_cols=85 Identities=12% Similarity=0.224 Sum_probs=49.1
Q ss_pred CcEEEEEE-cCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC----------------------------CHhHHHhC
Q psy6819 43 VPVIVNFH-AEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK----------------------------NAELVHTF 91 (135)
Q Consensus 43 ~~~vv~f~-~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~----------------------------~~~~~~~~ 91 (135)
+-+|++|| ++.-.-|--....+.+...+ ..++.++.+++|. +.++++.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 65666666 34444454444444444444 4467777777553 44678888
Q ss_pred CCCccc------eEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Q psy6819 92 EVKAVP------AVLAV-KNGLVIDKFIGL----IENEMIENMVSKL 127 (135)
Q Consensus 92 ~v~~~P------t~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~~ 127 (135)
++-.-. .++++ ++|.+.+..... ++..++.+.++.+
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 875322 23334 788877644432 3677887777654
No 300
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=64.45 E-value=45 Score=23.17 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=52.3
Q ss_pred CCc-EEEEEEcCCChhhhh-h-hHHHHHHHhc-CCCcEEEEEeCCC----------------------------------
Q psy6819 42 PVP-VIVNFHAEWCEPCHL-L-TPQLKKMLGN-SDSIDLAIIDVEK---------------------------------- 83 (135)
Q Consensus 42 ~~~-~vv~f~~~~C~~C~~-~-~~~~~~l~~~-~~~v~~~~vd~~~---------------------------------- 83 (135)
+++ +|..|+..|-..|.. + .|..+++... .+.+.++.||+.+
T Consensus 122 gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~ 201 (252)
T PF05176_consen 122 GKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQ 201 (252)
T ss_pred CceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhhhhccCCHHHCceEEEEeCCc
Confidence 344 445555555444432 2 2444555554 4478888888543
Q ss_pred -CHhHHHhCCCCccce--EEEE-eCCeEEEEEecCCCHHHHHHHHH
Q psy6819 84 -NAELVHTFEVKAVPA--VLAV-KNGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 84 -~~~~~~~~~v~~~Pt--~~~~-~~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
...+.+.+++...-+ ++++ .+|++.....|..+++++..+..
T Consensus 202 ~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 202 LSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred ccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 224566677765443 3344 78999999999999999887654
No 301
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=63.77 E-value=26 Score=20.19 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=42.1
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhH-HHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL-VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~-~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.+|++|++.+=.+.+. +-...+..+|....++. .+.--...+|++. .+|..+. +...+.+.|++...+
T Consensus 20 g~cpf~~rvrl~L~eK---gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~------eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLK---GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT------DNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHC---CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec------CHHHHHHHHHHHccC
Confidence 5799999877555543 33455666776655544 4444456789655 3565442 456677777776554
Q ss_pred C
Q psy6819 131 D 131 (135)
Q Consensus 131 ~ 131 (135)
.
T Consensus 89 ~ 89 (91)
T cd03061 89 P 89 (91)
T ss_pred C
Confidence 3
No 302
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=63.23 E-value=8.4 Score=25.58 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=22.8
Q ss_pred hHHHhCCCCccceEEEEe-CCeEEEEEecCCCHHHHHHHH
Q psy6819 86 ELVHTFEVKAVPAVLAVK-NGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 86 ~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 124 (135)
..+.+.||.++|++++=. +|. ...+.|.--.+.+++.+
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGK-TEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCC-ccceecCCcHHHHHHHh
Confidence 346677999999998743 232 12456664455555443
No 303
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=62.31 E-value=30 Score=20.35 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=24.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCCCHhH
Q psy6819 47 VNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEKNAEL 87 (135)
Q Consensus 47 v~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~ 87 (135)
|.+|.+.+.-...++..-+++..- ..+|.|-.||+..+++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~ 45 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA 45 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH
Confidence 445555566666666666665554 56899999999987654
No 304
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=61.26 E-value=10 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.641 Sum_probs=21.3
Q ss_pred CCCHhHHHhCCCCccceEEEEeCCeEEE
Q psy6819 82 EKNAELVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 82 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
|....+.++|+|+.+|+++. .+|..+.
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l~ 198 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRLR 198 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEEE
Confidence 45677999999999999884 6776543
No 305
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.23 E-value=70 Score=23.92 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEE-EEecCCCHHHH
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVID-KFIGLIENEMI 120 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~~~~~~l 120 (135)
..++.+.-..+....++.+...+++++...+.+.+-..+. + ..-|+|.+-+.|.-.. ++.|..--.++
T Consensus 18 ~~~i~l~asldds~~s~~~~~ll~eia~~S~kis~~~~~~-----~------~RkpSF~i~r~g~~~gv~FAglPlGHEf 86 (520)
T COG3634 18 EQPIELVASLDDSEKSKEIKELLDEIASLSDKISLEEDSD-----L------VRKPSFSINRPGEDQGVRFAGLPLGHEF 86 (520)
T ss_pred cCCeEEEEecCcccccHHHHHHHHHHHhhccceeeeecCc-----c------ccCCceeecCCCcccceEEecCcccchH
Confidence 5677888888888999999999999998866666554421 1 3348888766665443 77787667778
Q ss_pred HHHHHhhCCCCC
Q psy6819 121 ENMVSKLLPKDK 132 (135)
Q Consensus 121 ~~~i~~~~~~~~ 132 (135)
-.++..++.-..
T Consensus 87 tSlVLaLlqv~G 98 (520)
T COG3634 87 TSLVLALLQVGG 98 (520)
T ss_pred HHHHHHHHHhcC
Confidence 777776654333
No 306
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=58.81 E-value=47 Score=23.11 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=55.1
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC---CCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHH
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE---KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMI 120 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~---~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 120 (135)
.-++...+..|+.+-..+..+.+++.. +++++.|+-+ .-+.+.+.+.-...+.++|+.+ +..-.+..+...|
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~--GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD---LsFe~~d~~yk~L 127 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQ--GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD---LSFEEGDTEYKAL 127 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhc--CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC---CCCCCCcHHHHHH
Confidence 356667888999999988888888855 4788888755 3455666666556666665543 2222334456677
Q ss_pred HHHHHhhCCCCC
Q psy6819 121 ENMVSKLLPKDK 132 (135)
Q Consensus 121 ~~~i~~~~~~~~ 132 (135)
+..++.-++..+
T Consensus 128 Ks~LeGgle~~P 139 (249)
T PF05673_consen 128 KSVLEGGLEARP 139 (249)
T ss_pred HHHhcCccccCC
Confidence 777776665544
No 307
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=56.79 E-value=41 Score=20.23 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCC-hhhhhhhHHHHHHHhc---------CCC--cEEEEEeCCCCHhHHHhCCC-CccceEEEE---eCC
Q psy6819 42 PVPVIVNFHAEWC-EPCHLLTPQLKKMLGN---------SDS--IDLAIIDVEKNAELVHTFEV-KAVPAVLAV---KNG 105 (135)
Q Consensus 42 ~~~~vv~f~~~~C-~~C~~~~~~~~~l~~~---------~~~--v~~~~vd~~~~~~~~~~~~v-~~~Pt~~~~---~~g 105 (135)
..|.+|+|-...- +.-+...+.++.++++ ++. +-|+..+-+....+..-.+. ...|.++++ ..+
T Consensus 14 ~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r~ 93 (116)
T cd03071 14 EGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARA 93 (116)
T ss_pred CCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEeccccc
Confidence 4578888875443 3566666666655433 122 22333332223333333344 357888776 344
Q ss_pred eEEEEEecCCCHHHHHHHHHhhC
Q psy6819 106 LVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 106 ~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
+.+... ..++.+.+.+|+.+.+
T Consensus 94 ~~v~~~-eeIT~e~~~~fv~~yl 115 (116)
T cd03071 94 KYVMDV-EEITPAIVEAFVSDFL 115 (116)
T ss_pred eEeCch-HhcCHHHHHHHHHHhh
Confidence 444332 5578999999998765
No 308
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=55.97 E-value=21 Score=23.37 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=22.7
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++++|+.|+++ ..|..+.+++...++.++
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~ 83 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLA 83 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHH
Confidence 56778999986 678889888887777654
No 309
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=54.53 E-value=63 Score=21.68 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=28.0
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~ 86 (135)
-.+.+|-...|+.|......+.. ....+.++.|+...+..
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs~~dD~ 149 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGSQGDDE 149 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecCCCCHH
Confidence 46777888999999987766532 35567888888544443
No 310
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=54.34 E-value=16 Score=24.59 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCCHhHHHhCCCCccceEEEE-eCCeEEE
Q psy6819 82 EKNAELVHTFEVKAVPAVLAV-KNGLVID 109 (135)
Q Consensus 82 ~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~ 109 (135)
|....+.++|+|+.+|+++.- .+|..+.
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 456678999999999998852 6777654
No 311
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=54.16 E-value=61 Score=21.36 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-HhHHHhCCCCccceEEEEeCCeEE
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-AELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
++...+-.++.+.|+.|....=.+++. +-.+....+|.+.. +++.+.--...+|++. .+|..+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~---gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEK---GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHC---CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 344455566678899999987655554 33456667776543 3455544456789986 356544
No 312
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=54.04 E-value=33 Score=18.23 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=34.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC----CCHhHHHhCCCCccceEEEEeCCeE
Q psy6819 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE----KNAELVHTFEVKAVPAVLAVKNGLV 107 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 107 (135)
+-.|+.+.|+.|....-.+.... -.+....++.. ..+.+.+......+|++. .+|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~---i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG---VDYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC---CCcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 34455677999988776665542 23455555543 234556666667899875 35644
No 313
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=53.85 E-value=25 Score=22.96 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=22.2
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++++|..|+++ ..|..+.+++...++.+.
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 45567888876 578889999988887664
No 314
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=53.56 E-value=33 Score=25.21 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=34.8
Q ss_pred CcEEEEEeCC-CC--HhHHHhCCCCcc-ceEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Q psy6819 73 SIDLAIIDVE-KN--AELVHTFEVKAV-PAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 73 ~v~~~~vd~~-~~--~~~~~~~~v~~~-Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
.++++.+-|- .. ..-...+|+-+- +..++|.+|+.+....+..-.++|.+.|+++
T Consensus 298 PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 298 PLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred CcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 4777777774 22 233456777654 4567789999998776654445555555544
No 315
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=53.23 E-value=43 Score=19.38 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.1
Q ss_pred ccceEEEEe--CCeEEEEEecCCCHHHHHHHHHhhCCCCC
Q psy6819 95 AVPAVLAVK--NGLVIDKFIGLIENEMIENMVSKLLPKDK 132 (135)
Q Consensus 95 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 132 (135)
.-|++++|. +|. ..|..+++++...+++.+....
T Consensus 52 ~gp~vvvyP~~~g~----wy~~v~p~~v~~Iv~~hl~~g~ 87 (97)
T cd03062 52 FAGNVIIYPKGDGI----WYGRVTPEHVPPIVDRLILGGK 87 (97)
T ss_pred cCCEEEEEeCCCee----EEeecCHHHHHHHHHHHhcCCc
Confidence 349999998 663 3455689999999988776543
No 316
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=53.14 E-value=25 Score=22.88 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++++|..|+++ ..|..+.+++.+.++.++
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~ 169 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 34566888876 678888998888877654
No 317
>PLN00062 TATA-box-binding protein; Provisional
Probab=53.02 E-value=25 Score=23.05 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++++|..|+.+ ..|..+.+++.+.++.++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i~ 168 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENIY 168 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 34566788876 578888888888777653
No 318
>PRK00394 transcription factor; Reviewed
Probab=52.84 E-value=26 Score=22.95 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++++|..|+++ ..|..+.+++.+.++.+.
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHH
Confidence 45567888876 678889988888777653
No 319
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=52.27 E-value=27 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=21.5
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 99 VLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 99 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
+++|..|+.+ ..|..+.+++.+.++.++
T Consensus 141 ~liF~sGkvv--itGaks~~~~~~a~~~i~ 168 (174)
T cd04516 141 LLIFVSGKIV--LTGAKSREEIYQAFENIY 168 (174)
T ss_pred EEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 4566888876 578888999988887664
No 320
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=51.01 E-value=45 Score=20.24 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=20.8
Q ss_pred HHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHH
Q psy6819 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 88 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
+-.|||+.+|.++| +++- ...|..+...-...+.
T Consensus 76 Aw~lgi~k~PAVVf--D~~~--VVYG~tDV~~A~~~~~ 109 (114)
T PF07511_consen 76 AWSLGITKYPAVVF--DDRY--VVYGETDVARALARIE 109 (114)
T ss_pred HHHhCccccCEEEE--cCCe--EEecccHHHHHHHHHH
Confidence 45679999999987 3443 2446655554444443
No 321
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=49.75 E-value=31 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.4
Q ss_pred eEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Q psy6819 98 AVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128 (135)
Q Consensus 98 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 128 (135)
++++|..|+.+ ..|..+.+++.+.++.++
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 169 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKIY 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHH
Confidence 34556778765 578889999998887764
No 322
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=48.83 E-value=57 Score=19.47 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK 83 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~ 83 (135)
+++++|.=-|+.|+.-. --..|+++.++ ..++.+...-+..
T Consensus 21 Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 21 GKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 68888888999999998 56688888887 4578888887753
No 323
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.44 E-value=67 Score=22.01 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEE
Q psy6819 55 EPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 55 ~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
.+|..+...+++++++ +..+.++.-|+.-.. .|. -.++.+++|+.+.
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINfAS----~Ys----D~IVAlK~G~vv~ 216 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINFAS----CYS----DHIVALKNGKVVK 216 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccHHH----hhh----hheeeecCCEEEe
Confidence 7899999999999999 655666555554332 222 2567789999876
No 324
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.38 E-value=35 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=26.8
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEE
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLA 77 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~ 77 (135)
..|.+++.|-|+.|=-..|.++++.... .+.+.
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~-gl~~~ 34 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP-GLEVV 34 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC-CceEE
Confidence 4688999999999999999999998662 34444
No 325
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=46.36 E-value=65 Score=23.60 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=46.7
Q ss_pred Chhhhhhh----HHHHHHHhc----CCCcEEEEEeCCCC---HhHHHhCCCCc--cceEEEEeCCeEEEEEecCCCHHHH
Q psy6819 54 CEPCHLLT----PQLKKMLGN----SDSIDLAIIDVEKN---AELVHTFEVKA--VPAVLAVKNGLVIDKFIGLIENEMI 120 (135)
Q Consensus 54 C~~C~~~~----~~~~~l~~~----~~~v~~~~vd~~~~---~~~~~~~~v~~--~Pt~~~~~~g~~~~~~~g~~~~~~l 120 (135)
||.|-+.. ..+.++.+. ...+++..+-|--| ...-..+++.+ -|...+|..|+.+.+..+..-.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 66665443 233333332 33467766665322 12223455543 5888899999999988888667888
Q ss_pred HHHHHhhCC
Q psy6819 121 ENMVSKLLP 129 (135)
Q Consensus 121 ~~~i~~~~~ 129 (135)
...+++..+
T Consensus 344 ~~~i~~~~~ 352 (361)
T COG0821 344 EALIEAYAE 352 (361)
T ss_pred HHHHHHHHH
Confidence 888877653
No 326
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=45.83 E-value=15 Score=20.00 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=16.1
Q ss_pred EEEEeCCeEEEEE---ecCCCHHHHHHHH
Q psy6819 99 VLAVKNGLVIDKF---IGLIENEMIENMV 124 (135)
Q Consensus 99 ~~~~~~g~~~~~~---~g~~~~~~l~~~i 124 (135)
|-+.-+|+.++.. .|..+.+++.+.|
T Consensus 43 Fev~~~g~~v~sk~~~~~fp~~~~~~~~i 71 (72)
T TIGR02174 43 FEVTVNGQLVWSKLRGGGFPEPEELKQLI 71 (72)
T ss_pred EEEEECCEEEEEeccCCCCCCHHHHHHhh
Confidence 3333588877633 2566777777665
No 327
>KOG4277|consensus
Probab=45.74 E-value=1.2e+02 Score=22.13 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=48.6
Q ss_pred cceEecChhHHH-HHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEEeCCCCHhHHH-hCCCCccceEE
Q psy6819 24 KSYIIENNEQFI-KHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVH-TFEVKAVPAVL 100 (135)
Q Consensus 24 ~~~~~~~~~~~~-~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~-~~~v~~~Pt~~ 100 (135)
+.+...+.++.. ..+...+.|..|+|.+..-|- ...+...+.+ ..-.+|+... .+++. .-.....|.+.
T Consensus 134 aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL----~d~fidAASe~~~~a~FfSas----eeVaPe~~~~kempaV~ 205 (468)
T KOG4277|consen 134 AIIEPINENQIEFEHLQARHQPFFVFFGTGEGPL----FDAFIDAASEKFSVARFFSAS----EEVAPEENDAKEMPAVA 205 (468)
T ss_pred ceeeecChhHHHHHHHhhccCceEEEEeCCCCcH----HHHHHHHhhhheeeeeeeccc----cccCCcccchhhccceE
Confidence 455666654443 334455778888888665432 2223333332 2222333322 22222 22345679999
Q ss_pred EEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 101 AVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 101 ~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+|++...--...| +.+.|-+||.+
T Consensus 206 VFKDetf~i~de~--dd~dLseWinR 229 (468)
T KOG4277|consen 206 VFKDETFEIEDEG--DDEDLSEWINR 229 (468)
T ss_pred EEccceeEEEecC--chhHHHHHHhH
Confidence 9987754333333 56778888765
No 328
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=45.67 E-value=27 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=13.0
Q ss_pred ChhHHHHHHhcCCCcEEEEEEcCC
Q psy6819 30 NNEQFIKHVMNNPVPVIVNFHAEW 53 (135)
Q Consensus 30 ~~~~~~~~~~~~~~~~vv~f~~~~ 53 (135)
+..++.+.+...++|+++.|.+-|
T Consensus 120 s~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 120 SYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp -HHHHHHHHHH--S-EEEEE--TT
T ss_pred CHHHHHHHHhccCCeEEEEecCCC
Confidence 445666666667788888888888
No 329
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=44.58 E-value=70 Score=19.38 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHH
Q psy6819 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124 (135)
Q Consensus 88 ~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 124 (135)
+-.|||+.+|.++| +++- ...|..+...-...+
T Consensus 77 Aw~lGi~k~PAVV~--D~~~--VVYG~~DV~~A~~~~ 109 (113)
T TIGR03757 77 AWQLGVTKIPAVVV--DRRY--VVYGETDVARALALI 109 (113)
T ss_pred HHHcCCccCCEEEE--cCCe--EEecCccHHHHHHHH
Confidence 34679999999987 4442 345665555444433
No 330
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.06 E-value=34 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=19.6
Q ss_pred hHHHHHHhcCCCcEEEEEEcCCChhh
Q psy6819 32 EQFIKHVMNNPVPVIVNFHAEWCEPC 57 (135)
Q Consensus 32 ~~~~~~~~~~~~~~vv~f~~~~C~~C 57 (135)
..+...+...+||+++.|.+-|--+-
T Consensus 123 ~~lr~~I~e~dkp~LilfGTGwGlpd 148 (190)
T COG4752 123 SWLRNEIQERDKPWLILFGTGWGLPD 148 (190)
T ss_pred HHHHHHHhhcCCcEEEEecCCCCCCH
Confidence 45555666778999999999996443
No 331
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=43.64 E-value=34 Score=25.12 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCCcEEEEEeCCCC-HhHH--HhCCCC-ccc-eEEEEeCCeEEEEE-ecCCCHHHHHHHHHhh
Q psy6819 71 SDSIDLAIIDVEKN-AELV--HTFEVK-AVP-AVLAVKNGLVIDKF-IGLIENEMIENMVSKL 127 (135)
Q Consensus 71 ~~~v~~~~vd~~~~-~~~~--~~~~v~-~~P-t~~~~~~g~~~~~~-~g~~~~~~l~~~i~~~ 127 (135)
..+++++.+-|--| |.=+ ..|++- +-| ...+|+.|+.+.+. ....-.++|.+.|++.
T Consensus 296 ~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 296 KKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp HCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHHHHHHH
T ss_pred CCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHHHHHhh
Confidence 44788998888644 2222 245554 333 47788999999987 5655566777776653
No 332
>KOG3445|consensus
Probab=40.49 E-value=94 Score=19.57 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=53.7
Q ss_pred EEEEEcCCChhhhhhhHH----HHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEE-eCCeEEEEEecCCCHHHH
Q psy6819 46 IVNFHAEWCEPCHLLTPQ----LKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMI 120 (135)
Q Consensus 46 vv~f~~~~C~~C~~~~~~----~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l 120 (135)
+.+=|-.|-+.++.+... +.+++++++++.|+.-.... ..|.+... .||...-...-.++.+++
T Consensus 26 it~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg-----------~hP~lraeY~NGre~vicvrnms~eev 94 (145)
T KOG3445|consen 26 ITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRRG-----------QHPLLRAEYLNGRERVICVRNMSQEEV 94 (145)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccCC-----------CCceEEEEecCCceEEEeeccCCHHHH
Confidence 444566778888877654 56777888888888755322 25877654 899877767678899999
Q ss_pred HHHHHhhCCCCC
Q psy6819 121 ENMVSKLLPKDK 132 (135)
Q Consensus 121 ~~~i~~~~~~~~ 132 (135)
..++..+..+.+
T Consensus 95 s~~~~lL~ds~G 106 (145)
T KOG3445|consen 95 SKKATLLRDSSG 106 (145)
T ss_pred HHHHHHHhccCC
Confidence 998887765543
No 333
>KOG1731|consensus
Probab=40.30 E-value=59 Score=25.61 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=36.3
Q ss_pred CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 71 SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 71 ~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.+++.+..+-..+.-.+.+ ++++..|..+++++|+.-.......+-+.+.+.|.+++..
T Consensus 213 ~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 213 SKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred CCCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 4455555444444444455 9999999999999997654444444554555556655543
No 334
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=40.09 E-value=58 Score=17.10 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=33.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCC-CHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK-NAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.++.+.|+.|.+..-.+.... .+-.+....+|... .+++.+......+|++.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG-LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC-CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 466788999998765555421 12234455555332 345555555667897753 456443
No 335
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=40.03 E-value=64 Score=23.41 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=31.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHhc--CCCcEEEEEeC
Q psy6819 41 NPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDV 81 (135)
Q Consensus 41 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~ 81 (135)
++||+++.|-...=+..+.+...|++.+++ .+++.++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 467877766666668888999999998887 66677776663
No 336
>PRK13669 hypothetical protein; Provisional
Probab=38.84 E-value=74 Score=17.90 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 64 LKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 64 ~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
++.+ ++.+++.+...++-..=..|+ .-|.. +-||+.+. |. +++++.+.|.+.++.
T Consensus 20 ~~~L-e~dP~~dVie~gCls~CG~C~-----~~~FA--lVng~~V~---a~-t~eeL~~kI~~~i~e 74 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYCGICS-----EGLFA--LVNGEVVE---GE-TPEELVENIYAHLEE 74 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhCcCcc-----cCceE--EECCeEee---cC-CHHHHHHHHHHHHhh
Confidence 4444 457888888887654422222 12333 34897654 44 899999988887765
No 337
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=38.76 E-value=86 Score=20.86 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhhhhhhcccceEecChhHHHHHHhcCCCcEEEEEEcCCCh--hhh
Q psy6819 4 KQFQSTLFKRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCE--PCH 58 (135)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~--~C~ 58 (135)
+++++.|+++-..... ....+.+.++|...+.+ ++. ..++||+ .|.
T Consensus 111 ~~i~~~l~~~A~~~~~----~~~~~~~~~e~~~~~~~-~~~----v~~~wcg~~~~e 158 (202)
T cd00862 111 DEIQEDLYERALEFRD----ATRIVDTWEEFKEALNE-KGI----VLAPWCGEEECE 158 (202)
T ss_pred HHHHHHHHHHHHHHHh----ceEeeCCHHHHHHHHhc-CCE----EEEEecCCHHHH
Confidence 3455555555333221 16667788999887755 332 3457885 554
No 338
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.63 E-value=1e+02 Score=23.20 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=33.0
Q ss_pred hhHHHHHHhcC--CCcEEEEEEcCCChhhhh--hhHHHHHHHhc--CCCcEEEEEeCC
Q psy6819 31 NEQFIKHVMNN--PVPVIVNFHAEWCEPCHL--LTPQLKKMLGN--SDSIDLAIIDVE 82 (135)
Q Consensus 31 ~~~~~~~~~~~--~~~~vv~f~~~~C~~C~~--~~~~~~~l~~~--~~~v~~~~vd~~ 82 (135)
.-++.+.+.++ +--....|....|+.|+. ....++++.+. ..++.++.+|.+
T Consensus 56 iG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e 113 (420)
T COG3581 56 IGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSE 113 (420)
T ss_pred HHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeecc
Confidence 34555555543 112344455669999995 45666666555 579999999943
No 339
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=38.59 E-value=79 Score=23.16 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=36.2
Q ss_pred EEcCCChhhhhh-hHHHHHHHhc----CCCcEEEEEeCCCC-H--hHHHhCCCCcc--ceEEEEeCCeEEEEEec
Q psy6819 49 FHAEWCEPCHLL-TPQLKKMLGN----SDSIDLAIIDVEKN-A--ELVHTFEVKAV--PAVLAVKNGLVIDKFIG 113 (135)
Q Consensus 49 f~~~~C~~C~~~-~~~~~~l~~~----~~~v~~~~vd~~~~-~--~~~~~~~v~~~--Pt~~~~~~g~~~~~~~g 113 (135)
..=|.|+.|.-- .+...++.+. ...++++.+-|--| | .--.+++|-+- -..++|++|+.+....+
T Consensus 260 iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 260 VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 445677766632 2333333332 55688888877532 1 12234565543 34677899998775443
No 340
>KOG4079|consensus
Probab=38.19 E-value=85 Score=19.76 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=22.8
Q ss_pred CccceEEEE-eCCeEEEEEecCCCHHHHHHHHHhhCCC
Q psy6819 94 KAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130 (135)
Q Consensus 94 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 130 (135)
.-.|..-+| .+|+.+-.-...++.+++.+.+.+.+..
T Consensus 72 tpsPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGK 109 (169)
T KOG4079|consen 72 TPSPFARAYLDDGREVLFDLDGMKREEIEKHLAKTLGK 109 (169)
T ss_pred CCChHHHheecCcceEEEEcccccHHHHHHHHHHHhCc
Confidence 334555555 6776554334445788888888776654
No 341
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=37.82 E-value=90 Score=20.02 Aligned_cols=40 Identities=3% Similarity=0.182 Sum_probs=31.6
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHhc-CC-CcEEEEEeCC
Q psy6819 43 VPVIVNFHAEWCEPCHLLTPQLKKMLGN-SD-SIDLAIIDVE 82 (135)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~-~v~~~~vd~~ 82 (135)
+-..+.++++.++.|.-+...++.+++. ++ ++.+-.+++.
T Consensus 128 ~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 128 NELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 4477888889989999999999999998 55 6666666543
No 342
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=35.56 E-value=58 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=19.6
Q ss_pred CChhhhhhhHHHHHHHhcCCCcEEEEEeCC
Q psy6819 53 WCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82 (135)
Q Consensus 53 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 82 (135)
-|+.|+++...+ ++-+++++++..|-.
T Consensus 156 PCGaC~ewL~KI---Ae~np~f~v~mFd~t 182 (193)
T PF14421_consen 156 PCGACKEWLRKI---AEANPDFRVYMFDDT 182 (193)
T ss_pred cchHHHHHHHHH---HHhCCCeEEEEecCC
Confidence 499999876544 445788888887744
No 343
>KOG1651|consensus
Probab=35.29 E-value=41 Score=21.91 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=23.5
Q ss_pred EEEEeCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 99 VLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 99 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
+++-++|+++.|+.-..++.++..-|+.++.
T Consensus 140 FLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 140 FLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred EeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 4444899999998877777777777777764
No 344
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=35.00 E-value=35 Score=19.69 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=28.5
Q ss_pred hCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCC
Q psy6819 90 TFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 90 ~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
+|.++..-.=++|.+|+.+.+..|..+...+...+..++.++
T Consensus 18 ryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al~ss~ 59 (111)
T PF02484_consen 18 RYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNALISSN 59 (111)
T ss_pred HHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHHHhhH
Confidence 344444444456799999998888877777777666665544
No 345
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=34.32 E-value=78 Score=16.83 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=34.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC---CCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE---KNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~---~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
.|+.+.|+.|....-.++.. +-.+.+..+|.. ..+++.+.--...+|++.. .+|..+
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~l 62 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYN---GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFCL 62 (75)
T ss_pred EecCCCCccHHHHHHHHHHc---CCceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCEE
Confidence 45667788888766555543 334555666654 2345555555677899864 346543
No 346
>PHA02151 hypothetical protein
Probab=33.71 E-value=24 Score=22.73 Aligned_cols=12 Identities=33% Similarity=0.899 Sum_probs=10.1
Q ss_pred cEEEEEEcCCCh
Q psy6819 44 PVIVNFHAEWCE 55 (135)
Q Consensus 44 ~~vv~f~~~~C~ 55 (135)
--.|+||..||.
T Consensus 205 ~~~v~fy~kwct 216 (217)
T PHA02151 205 DRYVHFYKKWCT 216 (217)
T ss_pred ceEEEEehhhcc
Confidence 358999999995
No 347
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=32.79 E-value=1.3e+02 Score=20.94 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 82 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+-.++.+++++|..+|--+.+. |+...... ..+.+++.+.+..
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~-~~~y~D~~-~i~~~~~y~~~~~ 52 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIID-GKTYRDGV-DITPEEFYEKLKE 52 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEEC-CEEeecCC-CCCHHHHHHHHHh
Confidence 3456788999999999887664 55433222 3578888887765
No 348
>KOG0095|consensus
Probab=32.66 E-value=67 Score=20.72 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=25.8
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEE
Q psy6819 43 VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII 79 (135)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~v 79 (135)
..++|..|.-.|.++-.-.|.|-+-.+++.+-++.+|
T Consensus 80 ahalilvydiscqpsfdclpewlreie~yan~kvlki 116 (213)
T KOG0095|consen 80 AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKI 116 (213)
T ss_pred cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEE
Confidence 3489999999999999989988655555223334433
No 349
>KOG2824|consensus
Probab=32.52 E-value=1.9e+02 Score=20.64 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred CCcEEEEEEc-----CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHh----HHHhCCC----CccceEEEEeCCeEE
Q psy6819 42 PVPVIVNFHA-----EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE----LVHTFEV----KAVPAVLAVKNGLVI 108 (135)
Q Consensus 42 ~~~~vv~f~~-----~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~~~~g~~~ 108 (135)
+.-+||||.+ ..-..|......++.+ .|.+..=|+..+.. +.+.++- ...| .+|-.|+.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf-----~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LP--rVFV~GryI 202 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESF-----RVKVDERDVSMDSEFREELQELLGEDEKAVSLP--RVFVKGRYI 202 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhC-----ceEEEEecccccHHHHHHHHHHHhcccccCccC--eEEEccEEe
Confidence 3346666665 3446777777777665 58888777776543 4444444 4578 344567655
Q ss_pred E
Q psy6819 109 D 109 (135)
Q Consensus 109 ~ 109 (135)
+
T Consensus 203 G 203 (281)
T KOG2824|consen 203 G 203 (281)
T ss_pred c
Confidence 4
No 350
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=32.33 E-value=1.2e+02 Score=18.47 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=27.8
Q ss_pred CccceEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Q psy6819 94 KAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127 (135)
Q Consensus 94 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 127 (135)
..+|.++.|++-+-+|-..-..+.+++++-+++.
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 5789999898888888777777899998887764
No 351
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=31.78 E-value=84 Score=19.89 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.4
Q ss_pred CHhHHHhCCCCccceEE
Q psy6819 84 NAELVHTFEVKAVPAVL 100 (135)
Q Consensus 84 ~~~~~~~~~v~~~Pt~~ 100 (135)
..+++++++++.+|.++
T Consensus 120 gddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 120 GDDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHHhCCCcccEEe
Confidence 44689999999999876
No 352
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=31.75 E-value=85 Score=16.52 Aligned_cols=55 Identities=18% Similarity=0.065 Sum_probs=31.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCC--CccceEEEEeCCeE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEV--KAVPAVLAVKNGLV 107 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~~ 107 (135)
.++.+.|+.|....-.+.... -......++....+....+.+- ..+|++.. +|..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g---l~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~ 59 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG---VPYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKP 59 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC---CCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEE
Confidence 456778999998776665542 2344445554433222334443 57998863 5543
No 353
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=31.45 E-value=1e+02 Score=20.19 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhhcccceEecChhHHHHHHhcC-CCcEEEEEEcC
Q psy6819 8 STLFKRCFNHFLERKFKSYIIENNEQFIKHVMNN-PVPVIVNFHAE 52 (135)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~f~~~ 52 (135)
+...++.-..-++.+..+-...+.+++-+.+.+. ..|++|.|=..
T Consensus 17 E~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~ 62 (180)
T PF14097_consen 17 EIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDK 62 (180)
T ss_pred HHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3344444444456666777788889999888866 67899999654
No 354
>PRK10387 glutaredoxin 2; Provisional
Probab=31.30 E-value=1.5e+02 Score=19.24 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=30.3
Q ss_pred EEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 49 FHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 49 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
++.+.|++|....-.++... -......++........+......+|+++. .+|..+
T Consensus 4 y~~~~sp~~~kv~~~L~~~g---i~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~l 59 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKN---IPVELIVLANDDEATPIRMIGQKQVPILQK-DDGSYM 59 (210)
T ss_pred EeCCCCchHHHHHHHHHHcC---CCeEEEEcCCCchhhHHHhcCCcccceEEe-cCCeEe
Confidence 45677999998776655542 233444444333222222333457898753 356543
No 355
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=29.63 E-value=99 Score=17.30 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.0
Q ss_pred CCcEEEEEeCCCCHhHHHhCC----CCccceEEEEeCCeEEEEEec
Q psy6819 72 DSIDLAIIDVEKNAELVHTFE----VKAVPAVLAVKNGLVIDKFIG 113 (135)
Q Consensus 72 ~~v~~~~vd~~~~~~~~~~~~----v~~~Pt~~~~~~g~~~~~~~g 113 (135)
++-.-+.|-|..++++|-++. -+++|+++ +|+.+-.+.+
T Consensus 24 ~~~~tlsIPCksdpdlcmQLDgWDe~TSiPA~l---dgk~~lLyr~ 66 (80)
T PF07351_consen 24 KGEDTLSIPCKSDPDLCMQLDGWDEHTSIPAIL---DGKPSLLYRQ 66 (80)
T ss_pred CCCCeEEeecCCChhheeEecccccCCccceEE---CCceeeeeeh
Confidence 346677888999999987774 46889877 7776554443
No 356
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.39 E-value=1.7e+02 Score=20.08 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=21.7
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhc
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGN 70 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~ 70 (135)
..+-.|...-||.|-...+.|+++...
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~ 32 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAE 32 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHh
Confidence 345555567899999999999998877
No 357
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=27.87 E-value=1.5e+02 Score=17.99 Aligned_cols=56 Identities=13% Similarity=0.283 Sum_probs=38.8
Q ss_pred hhHHHHHHHhc-CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHh
Q psy6819 60 LTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126 (135)
Q Consensus 60 ~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 126 (135)
+.+..+-+++. +++..++.-|++... -+++.+.||..-.|..|....+-..+.+.+
T Consensus 5 y~~l~~~l~~~lG~~~EVVLHDl~~~~-----------~sIv~I~Ng~vsgR~vGdp~t~~~l~~l~~ 61 (118)
T PF08348_consen 5 YIPLVDFLAATLGPNCEVVLHDLSDPE-----------HSIVAIANGHVSGRKVGDPITDLALELLKE 61 (118)
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCCC-----------CEEEEEECCCccCCccCCchhHHHHHHHhc
Confidence 45666777777 778888888876432 367777899998898887554444454544
No 358
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=27.82 E-value=1.7e+02 Score=22.06 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHH
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELV 88 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~ 88 (135)
+.+.|-.||+.....-......++.+++..+++.+-.+|...++.+.
T Consensus 342 s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l~ 388 (438)
T COG4097 342 SDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYLD 388 (438)
T ss_pred cCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccC
Confidence 44566667765555555566678888888788988889988776543
No 359
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=27.22 E-value=1.8e+02 Score=18.83 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHH-hCCCCccceEEE-E-eCCeEEEEEecCCCHHHHHHHHH
Q psy6819 87 LVH-TFEVKAVPAVLA-V-KNGLVIDKFIGLIENEMIENMVS 125 (135)
Q Consensus 87 ~~~-~~~v~~~Pt~~~-~-~~g~~~~~~~g~~~~~~l~~~i~ 125 (135)
.++ .|+...--+.++ . +.|++.+...|..+.+++.+.|.
T Consensus 136 vak~AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 136 VAKNAWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVID 177 (184)
T ss_pred hhhhhhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHH
Confidence 344 777766544433 3 89999999999999888776654
No 360
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=27.05 E-value=1.6e+02 Score=18.07 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=34.2
Q ss_pred CCChhhhhhhHHHHHHHhc--------CCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGN--------SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~--------~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
..|..|...-..++++.++ +-.+.+-.+.++.. ++++.+ -..|++.+ ||+.+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEeh
Confidence 4899998776666544332 33567777776664 566665 56688776 78776
No 361
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=26.74 E-value=1.4e+02 Score=21.55 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=28.6
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 84 (135)
..+|.+. |+.|.+....++.+.+....++++-||++..
T Consensus 78 ~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 78 SMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 3678776 6678887878888775555789999998753
No 362
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=26.65 E-value=25 Score=22.12 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.2
Q ss_pred CChhhhhhhHHHH
Q psy6819 53 WCEPCHLLTPQLK 65 (135)
Q Consensus 53 ~C~~C~~~~~~~~ 65 (135)
.|++|++..|.+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999998873
No 363
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=26.49 E-value=25 Score=22.13 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=11.2
Q ss_pred CChhhhhhhHHHH
Q psy6819 53 WCEPCHLLTPQLK 65 (135)
Q Consensus 53 ~C~~C~~~~~~~~ 65 (135)
.|++|++..|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999998873
No 364
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=26.27 E-value=48 Score=20.28 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCcEEEEEEc----CCChhhhhhhHHHHHHHhc
Q psy6819 42 PVPVIVNFHA----EWCEPCHLLTPQLKKMLGN 70 (135)
Q Consensus 42 ~~~~vv~f~~----~~C~~C~~~~~~~~~l~~~ 70 (135)
++..+..||. .||..|-.....+..++-.
T Consensus 57 ~~~~~~AFWn~~e~~wCEdCdddLQ~yhslilL 89 (120)
T PF06279_consen 57 KKNLMTAFWNECEQRWCEDCDDDLQQYHSLILL 89 (120)
T ss_pred ccccEEEeccccchhhhhcchHHHHHHhheeEe
Confidence 4557889996 5999999988888776533
No 365
>KOG0868|consensus
Probab=26.27 E-value=1.8e+02 Score=19.48 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=33.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCC-H----hHHHhCCCCccceEEEEeCCeEEE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN-A----ELVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-~----~~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
.|+++--+|.+.|..=.+..-.+..+ +....-||+-+. . ++.+---...+|++++ +|..+.
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~ 69 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLT 69 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEee
Confidence 46777677777777665554333333 344444444322 2 2222223567999886 776653
No 366
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=26.22 E-value=2.6e+02 Score=21.30 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=30.5
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEe
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIID 80 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 80 (135)
-+|.|++.+-+.-....|.++++.+.++++.+..-.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt 85 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTT 85 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 588899999999999999999998887777776555
No 367
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=25.75 E-value=1.1e+02 Score=17.27 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=18.0
Q ss_pred HHHhCCCCccceEEEEeCCeEEE
Q psy6819 87 LVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 87 ~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
.++.|++...+++++..+|..+.
T Consensus 30 ~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 30 VLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHcCCCCccEEEEecCCcEEc
Confidence 47888997667788889998774
No 368
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=25.68 E-value=1.1e+02 Score=15.95 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=25.8
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
++|++|....-.+... ++.+-.++++... .-.-..+|++.. +|+.+
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l 59 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI 59 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE--CCEEE
Confidence 5899999987666653 3444444443321 112346888764 56543
No 369
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=25.41 E-value=30 Score=17.08 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=10.9
Q ss_pred CChhhhhhhHHHHHHHhc
Q psy6819 53 WCEPCHLLTPQLKKMLGN 70 (135)
Q Consensus 53 ~C~~C~~~~~~~~~l~~~ 70 (135)
+|.+|+.-.+.+.++.+.
T Consensus 18 kC~PCR~Gt~~l~~~l~~ 35 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEK 35 (46)
T ss_dssp --HHHHCCCCHHHHHHHH
T ss_pred CCCCcHhHHHHHHHHHHH
Confidence 588998777666655443
No 370
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=25.32 E-value=63 Score=22.58 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCHhHHHhCCCCccceEEEEeCCeEEEEEec-CCCHHHHHHHHHhh
Q psy6819 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIG-LIENEMIENMVSKL 127 (135)
Q Consensus 83 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~~~ 127 (135)
-.++..++++|..+|--+.+. |+.. ..| ..+.+++.+.+.+.
T Consensus 12 l~~~~~~~~~i~vvPl~i~~~-~~~y--~D~~~i~~~efy~~l~~~ 54 (280)
T PF02645_consen 12 LPPELAEEYGIYVVPLNIIID-GKEY--RDGVDISPEEFYEKLRES 54 (280)
T ss_dssp --HHHHHHTTEEEE--EEEET-TEEE--ETTTTSCHHHHHHHHHHT
T ss_pred CCHHHHHhCCeEEEeEEEecC-CeEE--ecCCCCCHHHHHHHHHhc
Confidence 346788999999999887665 4432 233 56888888888553
No 371
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=24.72 E-value=2.4e+02 Score=21.07 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=27.7
Q ss_pred cceEEEEeCCeEEE-EEecCCCHHHHHHHHHhhCCCC
Q psy6819 96 VPAVLAVKNGLVID-KFIGLIENEMIENMVSKLLPKD 131 (135)
Q Consensus 96 ~Pt~~~~~~g~~~~-~~~g~~~~~~l~~~i~~~~~~~ 131 (135)
+|-+.+-++|+.+. .+.|+++++-+++.++++-+..
T Consensus 303 IPDF~~~~~g~~vylEIvGfWtpeYL~rKl~kl~~~~ 339 (379)
T PF05626_consen 303 IPDFRFEHDGRRVYLEIVGFWTPEYLERKLEKLRKAG 339 (379)
T ss_pred ccceeEEECCEEEEEEEecCCCHHHHHHHHHHHhhCC
Confidence 57777667777655 6779999999999998875443
No 372
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.60 E-value=1.1e+02 Score=17.33 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.1
Q ss_pred HHHhCCCCccceEEEEeCCeEEE
Q psy6819 87 LVHTFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 87 ~~~~~~v~~~Pt~~~~~~g~~~~ 109 (135)
.++.+++...+++++..+|..+.
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEc
Confidence 47778887777888889998874
No 373
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.36 E-value=2.2e+02 Score=20.13 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=25.5
Q ss_pred CCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHH
Q psy6819 81 VEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121 (135)
Q Consensus 81 ~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 121 (135)
++-.+++.++++|..+|--+.+. |+... -....+.+++.
T Consensus 11 ~dl~~~~~~~~~I~vlPL~V~~~-g~~y~-D~~~l~~~~~~ 49 (282)
T COG1307 11 ADLPPELAEKLDITVLPLSVIID-GESYF-DGVELSPDQFY 49 (282)
T ss_pred CCCCHHHHHhCCeEEEeEEEEEC-CEEee-ccccCCHHHHH
Confidence 45678889999999999877654 44332 23334566533
No 374
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=24.03 E-value=86 Score=15.97 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCcEEEEEEcCCChhhhhhhH--HHHHHH
Q psy6819 33 QFIKHVMNNPVPVIVNFHAEWCEPCHLLTP--QLKKML 68 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~--~~~~l~ 68 (135)
.|+......+.++++.+....|.-|....| .+.++.
T Consensus 4 ~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~~~~~~~i~ 41 (56)
T PF02591_consen 4 EYERLRKRKGGVAVARVEGGTCSGCHMELPPQELNEIR 41 (56)
T ss_pred HHHHHHhhcCCcEEEEeeCCccCCCCEEcCHHHHHHHH
Confidence 344444444678999999999999997654 345553
No 375
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.90 E-value=2.1e+02 Score=18.46 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=29.8
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC
Q psy6819 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82 (135)
Q Consensus 44 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 82 (135)
.++..|=+=.-+-|..-...+++.+.+.+++.+..|..|
T Consensus 47 ~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 47 KVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred EEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 455666677788898888899888888667878877765
No 376
>PLN02402 cytidine deaminase
Probab=23.64 E-value=1.3e+02 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.1
Q ss_pred CcEEEEEEcCCChhhhhhhHHH
Q psy6819 43 VPVIVNFHAEWCEPCHLLTPQL 64 (135)
Q Consensus 43 ~~~vv~f~~~~C~~C~~~~~~~ 64 (135)
+..-|.+..+-|+.|+++...+
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHh
Confidence 3444555667899999986555
No 377
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=1e+02 Score=20.51 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 52 EWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 52 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
+.||+|.+.+- +-.+. +-.+.....+.|+..+-.+--|-+.+|-+.- .+|+.+
T Consensus 7 dHCPfcvrarm-i~Gl~--nipve~~vL~nDDe~Tp~rmiG~KqVPiL~K-edg~~m 59 (215)
T COG2999 7 DHCPFCVRARM-IFGLK--NIPVELHVLLNDDEETPIRMIGQKQVPILQK-EDGRAM 59 (215)
T ss_pred ccChHHHHHHH-Hhhcc--CCChhhheeccCcccChhhhhcccccceEEc-cccccc
Confidence 46999998653 22332 3355666666676666667777788886542 445443
No 378
>PHA02513 V1 structural protein V1; Reviewed
Probab=23.55 E-value=44 Score=20.14 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=23.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHhcCCCcE
Q psy6819 48 NFHAEWCEPCHLLTPQLKKMLGNSDSID 75 (135)
Q Consensus 48 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~ 75 (135)
.||..|.+.-..-...+-++++.++.++
T Consensus 33 if~qtwdgnii~sa~~fveva~~npklt 60 (135)
T PHA02513 33 IFYQTWDGNIISSARRFVEVAKANPKLT 60 (135)
T ss_pred HHHHhcCchHHHHHHHHHHHHhcCCccc
Confidence 4999999999988889999888765544
No 379
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.45 E-value=1.5e+02 Score=16.62 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=36.3
Q ss_pred hHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCCCCC
Q psy6819 61 TPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDK 132 (135)
Q Consensus 61 ~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 132 (135)
...+++|. +.+++.+...++-..=..|. ..|..+ -||+.+. |. +++++.+.|.+.++..+
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~Cg~C~-----~~pFAl--VnG~~V~---A~-t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSYCGPCA-----KKPFAL--VNGEIVA---AE-TAEELLEKIKEKIEENP 76 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhhCcCCC-----CCccEE--ECCEEEe---cC-CHHHHHHHHHHHHhccc
Confidence 33455554 35778888777654322222 224333 4897654 44 89999999988876543
No 380
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=23.27 E-value=1.5e+02 Score=16.65 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=25.1
Q ss_pred hHHHhCCCCccceEEEEeCCeEEEEEecCCCHHHHHHHHHhhCC
Q psy6819 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129 (135)
Q Consensus 86 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 129 (135)
..|.++++.++ +-=..+|.+.....| +.+.+.+++..+..
T Consensus 25 ~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 25 RIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHHHH
T ss_pred HHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHHHh
Confidence 56888898887 222367866666667 46667777766644
No 381
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.76 E-value=2.7e+02 Score=19.28 Aligned_cols=49 Identities=10% Similarity=0.273 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCcEEEEEE-cC----CChhhhhhhHHHHHHHhc--CCCcEEEEEeC
Q psy6819 33 QFIKHVMNNPVPVIVNFH-AE----WCEPCHLLTPQLKKMLGN--SDSIDLAIIDV 81 (135)
Q Consensus 33 ~~~~~~~~~~~~~vv~f~-~~----~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~ 81 (135)
.+.++....+..+|-.|+ .| -|+-|..+...+.....- +.++.++.|.-
T Consensus 65 sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsR 120 (247)
T COG4312 65 SLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSR 120 (247)
T ss_pred hHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEec
Confidence 445544444555554443 33 599999999888654443 66799998873
No 382
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.51 E-value=56 Score=19.73 Aligned_cols=28 Identities=25% Similarity=0.563 Sum_probs=20.5
Q ss_pred CcEEEEEEc----CCChhhhhhhHHHHHHHhc
Q psy6819 43 VPVIVNFHA----EWCEPCHLLTPQLKKMLGN 70 (135)
Q Consensus 43 ~~~vv~f~~----~~C~~C~~~~~~~~~l~~~ 70 (135)
+-.+..||. .||..|......+..++-.
T Consensus 58 k~ll~afwn~eD~~wCEDCeedLQ~fhsliLl 89 (120)
T COG4699 58 KDLLTAFWNNEDMEWCEDCEEDLQQFHSLILL 89 (120)
T ss_pred hhHHHHHhcchhhhHHHHHHHHHHHHHHHhhh
Confidence 334555675 5999999999888877644
No 383
>KOG0854|consensus
Probab=21.99 E-value=1.9e+02 Score=19.28 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=31.8
Q ss_pred CcEEEEEEc--CCChhhhhhhHHHHHHHhc--CCCcEEEEEeCCC
Q psy6819 43 VPVIVNFHA--EWCEPCHLLTPQLKKMLGN--SDSIDLAIIDVEK 83 (135)
Q Consensus 43 ~~~vv~f~~--~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~ 83 (135)
..|.|.|.. +.-+-|--....+.+++-+ ..+++.+...+|.
T Consensus 32 dSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 32 DSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred cceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 458888984 5678898888888888777 6678998888764
No 384
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=21.60 E-value=2.1e+02 Score=17.72 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=18.9
Q ss_pred cCCChhhhhhhHHHHHHHhcCCCcEEEEEe
Q psy6819 51 AEWCEPCHLLTPQLKKMLGNSDSIDLAIID 80 (135)
Q Consensus 51 ~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 80 (135)
-+-|..|.. .++++.+.++++.+..++
T Consensus 105 ~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 105 LPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred CCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 567999987 555666667778776654
No 385
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=21.49 E-value=26 Score=16.57 Aligned_cols=9 Identities=22% Similarity=0.884 Sum_probs=4.0
Q ss_pred CChhhhhhh
Q psy6819 53 WCEPCHLLT 61 (135)
Q Consensus 53 ~C~~C~~~~ 61 (135)
||.+|..+.
T Consensus 5 yCdyC~~~~ 13 (38)
T PF06220_consen 5 YCDYCKKYL 13 (38)
T ss_dssp B-TTT--B-
T ss_pred eccccccee
Confidence 788888765
No 386
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=21.17 E-value=2.8e+02 Score=18.90 Aligned_cols=68 Identities=7% Similarity=0.006 Sum_probs=41.5
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHH-hCCCCccceEEEEeCCeEEE
Q psy6819 42 PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH-TFEVKAVPAVLAVKNGLVID 109 (135)
Q Consensus 42 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~-~~~v~~~Pt~~~~~~g~~~~ 109 (135)
++..+..=|+++.+.--.|...-.++.+++-++.+..+..-..+++.. .-+...+|...+...|....
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~ 72 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLE 72 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEE
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecc
Confidence 444444445789998888888888888888889999999877777655 44678888887777776554
No 387
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=21.15 E-value=93 Score=18.60 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=14.4
Q ss_pred CHhHHHhCCCCccceEE
Q psy6819 84 NAELVHTFEVKAVPAVL 100 (135)
Q Consensus 84 ~~~~~~~~~v~~~Pt~~ 100 (135)
..+++++++++.+|.++
T Consensus 82 gddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 82 GDDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHHhCCCcccEEE
Confidence 44689999999999876
No 388
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=20.98 E-value=2.6e+02 Score=18.41 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=28.4
Q ss_pred EEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCC--CCHhHHHhCCCCccceEEEEeCCeEE
Q psy6819 49 FHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE--KNAELVHTFEVKAVPAVLAVKNGLVI 108 (135)
Q Consensus 49 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~ 108 (135)
++...|++|....-.+.... +.+-.+++. ......+.-....+|++.. .+|..+
T Consensus 3 y~~~~sp~~~kvr~~L~~~g-----l~~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l 58 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKN-----IPVEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRAM 58 (209)
T ss_pred ecCCCCChHHHHHHHHHHcC-----CCeEEEECCCCcchhHHHhcCCCCcceEEe-eCCeEe
Confidence 44667999987766555542 333333432 2222333333467897653 456443
No 389
>KOG1371|consensus
Probab=20.73 E-value=3.4e+02 Score=20.02 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHhcCCCcEEEEEeCCCCHhHHHhCCCCccceEEEE
Q psy6819 37 HVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102 (135)
Q Consensus 37 ~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 102 (135)
.+..+.++++|.=+... +-.-....+++..+...+.|..+|+.+.+.+.+-|....+=.++.|
T Consensus 22 L~~~gy~v~~vDNl~n~---~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hf 84 (343)
T KOG1371|consen 22 LLKRGYGVVIVDNLNNS---YLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHF 84 (343)
T ss_pred HHhCCCcEEEEeccccc---chhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEee
Confidence 34455555555544333 3333334444444457899999999999999999998887777766
No 390
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=20.61 E-value=78 Score=17.51 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.6
Q ss_pred cceEEEEeCCeEEE
Q psy6819 96 VPAVLAVKNGLVID 109 (135)
Q Consensus 96 ~Pt~~~~~~g~~~~ 109 (135)
.|++-.|++|+++.
T Consensus 12 ~Pti~W~kng~~l~ 25 (79)
T cd05855 12 KPTLQWFHEGAILN 25 (79)
T ss_pred CCceEEEECCEECC
Confidence 47899999998874
No 391
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=20.44 E-value=47 Score=24.42 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=10.9
Q ss_pred EEEEEEcCCChhhhhh
Q psy6819 45 VIVNFHAEWCEPCHLL 60 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~ 60 (135)
.||..|.+.|+.|+.-
T Consensus 82 hVI~~f~p~CG~C~~C 97 (366)
T COG1062 82 HVILLFTPECGQCKFC 97 (366)
T ss_pred EEEEcccCCCCCCchh
Confidence 5777788777666643
No 392
>PF10405 BHD_3: Rad4 beta-hairpin domain 3; InterPro: IPR018328 Mutations in the nucleotide excision repair (NER) pathway can cause the xeroderma pigmentosum skin cancer predisposition syndrome. NER lesions are limited to one DNA strand, but otherwise they are chemically and structurally diverse, being caused by a wide variety of genotoxic chemicals and ultraviolet radiation. The xeroderma pigmentosum C (XPC) protein has a central role in initiating global-genome NER by recognising the lesion and recruiting downstream factors. In NER in eukaryotes, DNA is incised on both sides of the lesion, resulting in the removal of a fragment ~25-30 nucleotides long. This is followed by repair synthesis and ligation. This reaction, in yeast, requires the damage binding factors Rad14, RPA, and the Rad4-Rad23 complex, the transcription factor TFIIH which contains the two DNA helicases Rad3 and Rad25, essential for creating a bubble structure, and the two endonucleases, the Rad1-Rad10 complex and Rad2, which incise the damaged DNA strand on the 5'- and 3'-side of the lesion, respectively []. The crystal structure of the yeast XPC orthologue Rad4 bound to DNA containing a cyclobutane pyrimidine dimer lesion has been determined. The structure shows that Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. The expelled nucleotides of the undamaged strand are recognised by Rad4, whereas the two cyclobutane pyrimidine dimer-linked nucleotides become disordered. This indicates that the lesions recognised by Rad4/XPC thermodynamically destabilise the double helix in a manner that facilitates the flipping-out of two base pairs []. Homologues of all the above mentioned yeast genes, except for RAD7, RAD16, and MMS19, have been identified in humans, and mutations in these human genes affect NER in a similar fashion as they do in yeast, with the exception of XPC, the human counterpart of yeast RAD4. Deletion of RAD4 causes the same high level of UV sensitivity as do mutations in the other class 1 genes, and rad4 mutants are completely defective in incision. By contrast, XPC is required for the repair of nontranscribed regions of the genome but not for the repair of the transcribed DNA strand. This entry represents the DNA-binding domain of Rad4, which has a beta-hairpin structure []. Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A.
Probab=20.40 E-value=1.7e+02 Score=16.20 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCCCHhHHHhCCCCccceEEEE---eCCeEEEEEecCCCHHHHHH
Q psy6819 81 VEKNAELVHTFEVKAVPAVLAV---KNGLVIDKFIGLIENEMIEN 122 (135)
Q Consensus 81 ~~~~~~~~~~~~v~~~Pt~~~~---~~g~~~~~~~g~~~~~~l~~ 122 (135)
...-..++++++|+..|.+.=| +.|.....+.|..=.++..+
T Consensus 26 ~~~~~~~a~~l~Idya~AV~GF~f~~~g~~~Pv~~GiVV~~e~~~ 70 (76)
T PF10405_consen 26 LPGIEKVAKKLGIDYAPAVVGFDFQKGGRAVPVIDGIVVAEEDEE 70 (76)
T ss_dssp -TTHHHHHHHTT---EEEEEEEEE-STT-EEEEEEEEEEEGGGHH
T ss_pred cccHHHHHHHcCCcEEeeecceeEccCCCCeEEECeEEEEhhHHH
Confidence 3444567899999999999876 46777777777643333333
No 393
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.20 E-value=2.7e+02 Score=18.34 Aligned_cols=35 Identities=11% Similarity=-0.071 Sum_probs=24.3
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhc-CCCcEEEEE
Q psy6819 45 VIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAII 79 (135)
Q Consensus 45 ~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~v 79 (135)
.|-+|+..-||+|=-....++++.+. .-.|...-+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 34567778899999999999888765 333443343
No 394
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=20.18 E-value=87 Score=16.07 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=11.4
Q ss_pred CHhHHHhCCCCccce
Q psy6819 84 NAELVHTFEVKAVPA 98 (135)
Q Consensus 84 ~~~~~~~~~v~~~Pt 98 (135)
-...|+++||..+|.
T Consensus 32 LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 32 LKRRCRRLGIPRWPY 46 (52)
T ss_pred HHHHHHHcCCCCCCc
Confidence 345788999988884
No 395
>KOG2990|consensus
Probab=20.08 E-value=83 Score=22.43 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=16.4
Q ss_pred CcEEEEEEc---CCChhhhhhhHHH
Q psy6819 43 VPVIVNFHA---EWCEPCHLLTPQL 64 (135)
Q Consensus 43 ~~~vv~f~~---~~C~~C~~~~~~~ 64 (135)
...||-|-- -||.-|+....+=
T Consensus 41 gilvIRFEMPynIWC~gC~nhIgmG 65 (317)
T KOG2990|consen 41 GILVIRFEMPYNIWCDGCKNHIGMG 65 (317)
T ss_pred ceEEEEEecccchhhccHHHhhhcc
Confidence 457788865 4999999876653
No 396
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=20.06 E-value=98 Score=16.39 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.3
Q ss_pred cceEEEEeCCeEEE
Q psy6819 96 VPAVLAVKNGLVID 109 (135)
Q Consensus 96 ~Pt~~~~~~g~~~~ 109 (135)
.|++..+++|+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 47788889998875
Done!