RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6819
(135 letters)
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 94.5 bits (235), Expect = 1e-24
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 25 SYIIENNEQFIKHVMNN--PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDV 81
I+ NE ++ V+ PV+ F +E + C LTP L+ + + LA +D
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDC 66
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
+ + F ++A+P V +NG +D F G E I ++ +LP+
Sbjct: 67 DAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPR 115
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 81.9 bits (203), Expect = 1e-21
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
+ E+ + V++ E C C ++ ++ +L N + ++ I ++ E
Sbjct: 4 TFKTIEEL-ATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQE 62
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ + V P VL NG I + I E +E +
Sbjct: 63 IAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE 104
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 77.8 bits (192), Expect = 7e-20
Identities = 20/104 (19%), Positives = 42/104 (40%)
Query: 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84
S I + + IV FH C C + L K + + ++ +D E
Sbjct: 2 SAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEAR 61
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
EL+ + VP ++ +++G V F G++ ++ + + +
Sbjct: 62 PELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASIH 105
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 75.5 bits (186), Expect = 7e-19
Identities = 41/102 (40%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAE 86
I++ F V+N+ PV+V+FHA+WC PC +L P+L+KM+ + +A +D++ + +
Sbjct: 17 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD 76
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
L +EV AVP VLA+KNG V+DKF+G+ + + +E + KL+
Sbjct: 77 LAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 72.5 bits (178), Expect = 1e-17
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 26 YIIENNEQF---IKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82
++I E++ + + V+ NF A WC P + P ++ N S+ +IDV+
Sbjct: 27 HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVD 86
Query: 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
+ ++ ++E+KA P +++G +DK +G + E + ++ +L +
Sbjct: 87 ELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPE-LHKKITAILDSLPPS 137
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 72.1 bits (177), Expect = 2e-17
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 17 HFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSID 75
H + +F + + + + P IV+F+A+WC PC ++ P L ++ I
Sbjct: 13 HLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIV 72
Query: 76 LAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
+ +D EK EL F ++++P++L + + G + + + + L K + +
Sbjct: 73 IYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEGH 131
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 71.6 bits (176), Expect = 2e-17
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 28 IENNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
IE+ F + + V+V+F A WC P ++ P + ++ +DV+ +
Sbjct: 16 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 75
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ EVK++P K G + +F G + + +E +++L+
Sbjct: 76 VASECEVKSMPTFQFFKKGQKVGEFSGANKEK-LEATINELV 116
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 70.8 bits (174), Expect = 4e-17
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL 87
++ ++ + + ++V+F A WC PC ++ P ++ ++ +DV++ +
Sbjct: 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAV 71
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+ V+A+P + +K+G ++DK +G ++ + +V+K
Sbjct: 72 AEEWNVEAMPTFIFLKDGKLVDKTVGADKDG-LPTLVAK 109
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 70.8 bits (174), Expect = 4e-17
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 YIIENNEQFIKHVMNN---PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82
++F H+ N VI++F A WC PC ++ P + +DV+
Sbjct: 9 IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVD 68
Query: 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++ + V+A+P L +K+G +D +G +++ I + L+
Sbjct: 69 ELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDD-IHTKIVALM 113
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 70.9 bits (174), Expect = 5e-17
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 26 YIIENNEQFIKHVM---NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE 82
N ++F + VI++F A WC PC + P + +DV+
Sbjct: 17 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVD 76
Query: 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
+ E+ + V+A+P L +K+G DK +G +++ ++N + K + +
Sbjct: 77 ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDD-LQNTIVKHVGATAASA 128
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 71.4 bits (175), Expect = 5e-17
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Query: 28 IENNEQFIKHV-MNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
+ + QF + + + ++V+F A W C + + ++ + ++ E E
Sbjct: 17 VGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPE 76
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
+ +E+ +VP L KN ID+ G E + V + P
Sbjct: 77 VSEKYEISSVPTFLFFKNSQKIDRLDGAHAPE-LTKKVQRHASSGSFLP 124
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 70.0 bits (172), Expect = 7e-17
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 28 IENNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
IE+ F + + V+V+F A WC PC ++ P + ++ +DV+ +
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ EVK++P K G + +F G + + +E +++L+
Sbjct: 65 VASESEVKSMPTFQFFKKGQKVGEFSGANKEK-LEATINELV 105
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 70.0 bits (172), Expect = 8e-17
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH 89
N ++++ ++++F+A WC PC ++ P L K++ + DV+++ ++
Sbjct: 18 TNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAK 77
Query: 90 TFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127
EV A+P + K+G +I K IG +E + L
Sbjct: 78 ECEVTAMPTFVLGKDGQLIGKIIGANPTA-LEKGIKDL 114
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 69.7 bits (171), Expect = 1e-16
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85
I+ + +F +++ VIV+F AEWC PC + P ++ + +DV++ +
Sbjct: 11 KIVTSQAEF-DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS 69
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
E+ + ++P KNG +D +G ++ ++ ++ K
Sbjct: 70 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSA-LKQLIEKYA 111
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 69.3 bits (170), Expect = 1e-16
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 26 YIIENNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84
+ ++ F + +V F C PC + P M +DV +
Sbjct: 4 KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC 63
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
T + A P +N + ID++ G +E + + L
Sbjct: 64 QGTAATNNISATPTFQFFRNKVRIDQYQGADAVG-LEEKIKQHL 106
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 69.7 bits (171), Expect = 1e-16
Identities = 18/102 (17%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVH 89
+ + +++M+ + + F A WC PC + ++K+ ++ A +D + N+E+V
Sbjct: 25 YSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVS 84
Query: 90 TFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131
V +P + ++G ++ IG + + ++ +
Sbjct: 85 KCRVLQLPTFIIARSGKMLGHVIGANPGM-LRQKLRDIIKDN 125
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 69.7 bits (171), Expect = 1e-16
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 28 IENNEQF---IKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84
+ + EQ+ I+ V+++F A WC PC ++ P + + +DV++
Sbjct: 17 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDEL 76
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+ F V+A+P L +K G V D+ +G I+ E + V
Sbjct: 77 KPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEE-LTAKVGL 117
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 70.6 bits (173), Expect = 1e-16
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNA 85
+ + + + +P++V+F A WC PC + PQ + + + LA ID + +
Sbjct: 49 VAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHP 108
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
+ ++ +PA + G + + G + V L
Sbjct: 109 AVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKLG 152
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 69.3 bits (170), Expect = 2e-16
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 28 IENNEQF--IKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI--IDVEK 83
I + EQF + +++ FH W EPC L + + + +++ ID ++
Sbjct: 5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE 64
Query: 84 NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127
N+E+ FE+ AVP + + G ++ + G E +++
Sbjct: 65 NSEISELFEISAVPYFIIIHKGTILKELSGADPKE-YVSLLEDC 107
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 69.4 bits (170), Expect = 2e-16
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSIDLAIIDVEK 83
N +P I+ F + C C + + K +I A ++ EK
Sbjct: 11 FQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK 70
Query: 84 NAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
N +L + ++ VP + + K G GL+ IE +++ L K+ +
Sbjct: 71 NIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKEGHHH 123
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 68.8 bits (169), Expect = 2e-16
Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 26 YIIENNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKN 84
++ K + N ++V+F A+WC PC + P+++ + ++ A +DV++N
Sbjct: 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQN 61
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
E + V A+P + +K+G +D+F G E + + +++
Sbjct: 62 EEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETK-LRETITR 102
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 69.3 bits (170), Expect = 2e-16
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL 87
+E + ++ + V+V+F A WC PC + P + ++ +D ++ +
Sbjct: 24 VETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSV 83
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++A+P + +K G ++DK +G ++E +++ ++K L
Sbjct: 84 ASDWAIQAMPTFMFLKEGKILDKVVGAKKDE-LQSTIAKHL 123
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 68.9 bits (169), Expect = 2e-16
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 28 IENNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI--IDVEKN 84
++ + + + V+V+F A WC PC + P K++ S+ D +DV+K
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKEL---SEKYDAIFVKVDVDKL 74
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
E + + A+P +A+KNG + +G + +E+M+ K +
Sbjct: 75 EETARKYNISAMPTFIAIKNGEKVGDVVGASIAK-VEDMIKKFI 117
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 68.5 bits (168), Expect = 2e-16
Identities = 25/102 (24%), Positives = 54/102 (52%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
+I + + + + +V+F AEWC PC +L P ++++ + + ++ ++N +
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPD 60
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ + V ++P V+ K+G +D+ IG + E IE + LL
Sbjct: 61 IAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 68.1 bits (167), Expect = 4e-16
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
+ F + + + +V F + C C +TP L+++ N +S +DVE+ L
Sbjct: 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLF 69
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
F +K VP +L K+G K G +E++ +E M++ +L
Sbjct: 70 QRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 68.2 bits (167), Expect = 7e-16
Identities = 22/113 (19%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 23 FKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDV 81
F +I + + ++ + +P++++F A WC PC P + + + ++
Sbjct: 36 FDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
E L F ++++P ++ +NG +ID G + +N + + L +D +
Sbjct: 96 EAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPNS 148
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 66.6 bits (163), Expect = 1e-15
Identities = 21/105 (20%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 26 YIIENNEQFIKHVM---NNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDV 81
+I++ + + P++V+F A WC PC ++ P + + + + +DV
Sbjct: 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDV 64
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+ A + + A+P K+G+ D +G +++ ++ +V+K
Sbjct: 65 DAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDK-LKALVAK 108
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 67.6 bits (165), Expect = 1e-15
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 23 FKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDV 81
F I + + P IV+F+A+WC PC ++ P L+++ + I + ++V
Sbjct: 32 FLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNV 91
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
+K EL F ++++P + V +G + E ++ + K+L K
Sbjct: 92 DKEPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLK 140
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 66.6 bits (163), Expect = 2e-15
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL 87
+ +F + V+V+F+A WC PC ++ P ++K D +DV++ ++
Sbjct: 11 FKTASEF-DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDV 69
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
EV A+P +L KNG + K +G I+ ++
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVGANPAA-IKQAIAA 107
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 66.8 bits (163), Expect = 3e-15
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 44 PVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVL 100
++++ +L + D +A+ D+E++ + F V+ PA L
Sbjct: 38 VILLSSDPRRTPEVSDNPVMIAELLREFPQFD-WQVAVADLEQSEAIGDRFNVRRFPATL 96
Query: 101 AVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
+G + G+ + ++ ++
Sbjct: 97 VFTDGKLRGALSGIHPWAELLTLMRSIVDT 126
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 65.9 bits (161), Expect = 5e-15
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 2 SVKQFQSTLFKRCFNHFLERKFKSYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLL 60
S T R ++L K ++ N I V +++ F A+WC+ C +
Sbjct: 1 STNDDPLTPLNRFDKYYLRMFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQ 60
Query: 61 TPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEM 119
+ ++ K+ I L +D++KN L F VK++P ++ +KN ++ + + +
Sbjct: 61 STEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSND 120
Query: 120 IENMVSK 126
+ ++ K
Sbjct: 121 LIALIKK 127
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 65.1 bits (159), Expect = 7e-15
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85
+ +E + + P V+V+F A WC PC L L + + + +DV+KN
Sbjct: 7 HFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNG 66
Query: 86 ELVHTFEVKAVPAVLAVKNGL----VIDKFIGLIENEMIENMVSKLLPK 130
+ V ++PA+ VK +D+F+G + I+ + K
Sbjct: 67 NAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSR-IKADIEKFKHH 114
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 64.7 bits (158), Expect = 1e-14
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 13 RCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSD 72
+H L + +I + +QF K V V+++F A WC PC ++ P +K+
Sbjct: 5 HHHHHHLVPRGSVQVISSYDQF-KQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPA 63
Query: 73 SIDLAI--IDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+ +DV++ +++ ++A+P + KNG ID +G ++ ++ +++
Sbjct: 64 GDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSK-LQAAITQ 118
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 63.4 bits (155), Expect = 2e-14
Identities = 19/103 (18%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 28 IENNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNA 85
+++ + V+++F A WC PC +++P+L ++ +D++ + +DV++
Sbjct: 5 VKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE 64
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
++ + + ++P + +KNG+ +++F G +E+++ +
Sbjct: 65 DIAMEYNISSMPTFVFLKNGVKVEEFAGANAKR-LEDVIKANI 106
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 64.1 bits (156), Expect = 2e-14
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 21 RKFKSYIIENNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI 78
KF + Q++ V N + V+++ + C ++ L +
Sbjct: 7 GKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVK 66
Query: 79 IDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE-------NEMIENMVSK 126
V E + +P + KNG + KFIG+IE E +E +S+
Sbjct: 67 AIVNSCIE---HYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSE 118
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 64.0 bits (156), Expect = 2e-14
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 28 IENNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
++N + + +++ F A WC+PC+ + K N + L IDV+ + +
Sbjct: 25 LKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKN-QLNYYYVTLVDIDVDIHPK 83
Query: 87 LVHTFEVKAVPAVLAVKNG----LVIDKFIGLIENEMIENMVSKL 127
L +KA+P N +++ G +N+ IE K
Sbjct: 84 LNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQND-IEKAFQKY 127
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 63.1 bits (154), Expect = 3e-14
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 22 KFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIID 80
K + + E+ V+ N V+V+ AEWC PCHL P KK+ ++
Sbjct: 1 KKEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLN 60
Query: 81 VEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
V++N ++ + V +P L NG ++D +G ++ + +E+ V+K L
Sbjct: 61 VDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 63.2 bits (154), Expect = 3e-14
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELV 88
+ F V+++ PV+V+F A WC PC ++ P L+++ + + +A +DV+ N E
Sbjct: 18 TDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETA 77
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
F+V ++P ++ K+G + + +G + +S ++P
Sbjct: 78 RNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 119
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 62.4 bits (152), Expect = 7e-14
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 22 KFKSYIIENNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII 79
KF + Q++ V N V VI++ + C L+ L +
Sbjct: 1 KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60
Query: 80 DVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE-------NEMIENMVSK 126
V + + +P + KNG + KFIG+IE E +E +++
Sbjct: 61 IVN---SCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE 111
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 63.1 bits (153), Expect = 8e-14
Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 28 IENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNA 85
+ + ++ + + + +++ F + C L L K + S + ++DV++ A
Sbjct: 8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA 67
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124
F++ +P+ + NG + G ++
Sbjct: 68 VYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSF 106
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 61.9 bits (151), Expect = 9e-14
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 19 LERKFKSYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDL 76
+E +I + +F V+ PV+V F A WC PC L++P + SD + +
Sbjct: 1 METAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKV 60
Query: 77 AIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131
++++ N V ++V+ VPA+ VK ++D G+I + + + + L +
Sbjct: 61 VKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNNN 115
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 62.8 bits (153), Expect = 9e-14
Identities = 22/101 (21%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELV 88
+ + F + V P +V+F A WC PC L++P L+++ ++ + + ++V+++ L
Sbjct: 39 DEKGFAQEVAGAP-LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLA 97
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
+ V++VP ++ + G + ++G ++E + L
Sbjct: 98 ARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE 138
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 62.4 bits (152), Expect = 1e-13
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 25 SYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVE 82
S IIE + + + V ++ PV+V F++ C C + P ++ S I++
Sbjct: 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIA 65
Query: 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
N + V+ P +G + + +G I +++N V +L
Sbjct: 66 TNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQH 113
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 61.1 bits (149), Expect = 2e-13
Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
+E F + V+ + PV+V+F A WC PC ++ P ++++ + + ++V++N
Sbjct: 7 TDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTA 66
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++++P +L KNG V+D+ +G E ++ + K L
Sbjct: 67 AQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 61.2 bits (149), Expect = 2e-13
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
++ F + V+ N PV+V+F A WC PC + P L+ + D I++ +++++N
Sbjct: 11 TDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTA 70
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ V ++P + + G V +G I + +
Sbjct: 71 AKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 61.2 bits (149), Expect = 2e-13
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEK 83
+ IE +Q + V+V+F AEWC PC ++ P L+++ + +A +DV++
Sbjct: 1 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE 60
Query: 84 NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
N + + V ++P V+ K+G ++ +G + + K LP
Sbjct: 61 NPKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLP 106
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 60.5 bits (147), Expect = 4e-13
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
++ F V+ ++V+F AEWC P ++ P L ++ + +A +++++N
Sbjct: 28 TDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 87
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++ +P +L KNG V +G + ++ + L
Sbjct: 88 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 62.8 bits (152), Expect = 5e-13
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
Query: 21 RKFKSYI-IENNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLA 77
++ +E+ EQF++ + ++V+ + + + C L L + +
Sbjct: 109 PRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFC 168
Query: 78 IIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE---NEMIENMVSKLLPK 130
I N F +P +L K G ++ FI + E E V L +
Sbjct: 169 KIKAS-NTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNE 223
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 60.0 bits (146), Expect = 5e-13
Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELV 88
++ F + V+ V+V+F AEWC PC ++ P L ++ + + +A ++++ N E
Sbjct: 8 SDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETP 67
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+ ++V+++P ++ V++G VIDK +G + ++ V
Sbjct: 68 NAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVES 105
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 59.6 bits (145), Expect = 6e-13
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELV 88
N++ F V+ + VPV+V+F A WC PC ++ P + ++ G D + ++ +++ +
Sbjct: 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVA 66
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++++P ++ K G + IG + I V K L
Sbjct: 67 SEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 60.6 bits (147), Expect = 6e-13
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLK--------KMLGNSDSIDLAIIDVEKNAELVHTFEVKA 95
I+ +++ C CH PQL ++ + ++ ++ V+
Sbjct: 33 DAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEG 92
Query: 96 VPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
P ++ K G ++DK +G + ++
Sbjct: 93 TPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 62.2 bits (151), Expect = 6e-13
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
++ F V+ ++V+F AEWC PC ++ P L ++ + +A +++++N
Sbjct: 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 77
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
+ ++ +P +L KNG V +G + ++ + L
Sbjct: 78 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 118
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 59.6 bits (145), Expect = 6e-13
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
++ F V+ ++V+F AEWC PC ++ P L ++ + +A +++++N
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++ +P +L KNG V +G + ++ + L
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 59.6 bits (145), Expect = 6e-13
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 38 VMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELVHTFEVKAV 96
+ PV+V+F A WC PC ++ P L++ ++D + +A ++V++N E F + ++
Sbjct: 13 AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSI 72
Query: 97 PAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
P ++ K G + + IG E +E ++ +L
Sbjct: 73 PTLILFKGGRPVKQLIGYQPKEQLEAQLADVL 104
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 59.6 bits (145), Expect = 6e-13
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
N+ + + V+ + VPV+V+F A WC PC L+ P + ++ S I + ++ ++ +
Sbjct: 6 NDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIA 65
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++++P VL KNG + IG + + + + K L
Sbjct: 66 TQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 60.0 bits (145), Expect = 3e-12
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 21 RKFKSYI-IENNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLA 77
++ +E EQF++ + ++VN + + C L L+ + +
Sbjct: 96 PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC 155
Query: 78 IIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIE---NEMIENMVSKLLPK 130
I N F +P +L K G +I FI + E + V L +
Sbjct: 156 KIRAS-NTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE 210
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 57.8 bits (140), Expect = 5e-12
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 30 NNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-EKNAEL 87
N + F V PV+++ +WC PC + P+ +K+ + +D ++N L
Sbjct: 24 NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL 83
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121
++ VP +K V+ + G ++++E
Sbjct: 84 AKELGIRVVPTFKILKENSVVGEVTGAKYDKLLE 117
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 56.9 bits (138), Expect = 7e-12
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 30 NNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-EKNAEL 87
N + F V PV+++ +WC P + P+ +K+ + +D ++N L
Sbjct: 11 NKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL 70
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121
++ VP +K V+ + G ++++E
Sbjct: 71 AKELGIRVVPTFKILKENSVVGEVTGAKYDKLLE 104
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 56.6 bits (137), Expect = 1e-11
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102
+V+F A C PC ++ P L+++ + D+ +DV++N +EV ++P ++
Sbjct: 21 VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF 80
Query: 103 KNGLVIDKFIGLIENEMIENMVSKLL 128
K+G +DK +G E + ++ K L
Sbjct: 81 KDGQPVDKVVGFQPKENLAEVLDKHL 106
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 55.8 bits (135), Expect = 2e-11
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 43 VPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101
V+ +F A WC P ++ P L+++ D + + IDV++N E + V ++P +L
Sbjct: 18 GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 102 VKNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
+K+G V++ +G E ++ +V+K L + +
Sbjct: 78 LKDGEVVETSVGFKPKEALQELVNKHLLEHHHH 110
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 55.8 bits (135), Expect = 2e-11
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
+ F + V+ +V+F+A WC PC P+ + + + +D + +
Sbjct: 9 TPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTC 68
Query: 89 HTFEVKAVPAVLAVKNG----LVIDKFIGLIENEMIENMVSKLLPKDKTN 134
+KA P+V + + ++ I + + I ++ L ++
Sbjct: 69 QKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 56.3 bits (135), Expect = 1e-10
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM-----LGNSDSIDLAIIDV 81
+++ +Q I+++ + V ++V F C C L K I +++
Sbjct: 121 LMDETKQAIRNI-DQDVRILV-FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 178
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ E + V AVP ++ NG +F G +M + L
Sbjct: 179 IEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
Score = 30.4 bits (68), Expect = 0.11
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 39 MNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI--IDVEKNAELVHTFEVKAV 96
M NPV +IV + C+ C L ++++ +D + I D + EL + +
Sbjct: 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRA 79
Query: 97 PAVLAVKNGLVID-KFIGLIENEMIENMVSKLLPKDKTNP 135
PA ++G ++ GL + ++ +
Sbjct: 80 PATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREET 119
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 54.0 bits (130), Expect = 1e-10
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII----DVEK- 83
+ + +K + V+ WC PC L+ + K +D + + D+EK
Sbjct: 14 LSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKG 73
Query: 84 -NAELVHTFEVKAVPAVLAVK-NGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
EL + V A P +L + +G V+ + +G + + V + + +
Sbjct: 74 EGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGHH 126
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 51.9 bits (125), Expect = 4e-10
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102
I F + C C ++++ D++++ I+V +N + + + AVP ++
Sbjct: 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63
Query: 103 KNGLVIDKFIGLIENEMIENMVSKLL 128
+ +FIG E + + K L
Sbjct: 64 GDV----EFIGAPTKEALVEAIKKRL 85
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 53.7 bits (129), Expect = 7e-10
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 1/116 (0%)
Query: 15 FNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDS- 73
F II + +N+ VNF++ C CH L P ++ D
Sbjct: 87 RYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL 146
Query: 74 IDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
+ + ++ + L V + P++ ++G+ K+ G E + + +
Sbjct: 147 LRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 53.7 bits (129), Expect = 1e-09
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 12 KRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKK----M 67
+ + ++ E F + V + + ++V F+A WC C L P+ +K +
Sbjct: 118 REVSQPDWTPPPEVTLVLTKENFDEVVNDADI-ILVEFYAPWCGHCKKLAPEYEKAAKEL 176
Query: 68 LGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127
S I LA +D +L F+V P + + G D + +++ M+ +
Sbjct: 177 SKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQS 236
Query: 128 LPK 130
Sbjct: 237 GAA 239
Score = 51.8 bits (124), Expect = 4e-09
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKK----MLGNSDSIDLAIIDVEKNA 85
N+ F V + V++ F+A WC C P+ +K + I +A ID +
Sbjct: 21 NDANFDNFVADKD-TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS 79
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
L F+V P + +K G +D + G E I V ++ D T P
Sbjct: 80 VLASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKVREVSQPDWTPP 128
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 51.7 bits (124), Expect = 1e-09
Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLK------KMLG---------NSDSI 74
++ F V+ ++V+F AEWC P + KM+ +
Sbjct: 9 TDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKL 68
Query: 75 DLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+A +++++N + ++ +P +L KNG V +G + ++ + L
Sbjct: 69 TVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 51.4 bits (123), Expect = 2e-09
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 40 NNPVPVIVNFHAEWCEPCHLLTPQLKKMLG--NSDSIDLAIIDVEKNAELVHTFEV---- 93
+ V IV F A W C P + N ++ +DV + ++ ++V
Sbjct: 24 DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSP 83
Query: 94 --KAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124
K +P ++ + G + + + +
Sbjct: 84 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 116
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 50.1 bits (120), Expect = 4e-09
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELV 88
F + V+ + +V F+A WC C LTP+ KK D + + ++ +K+ L
Sbjct: 23 TPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLG 82
Query: 89 HTFEVKAVPAVLAVKNG 105
+ V+ P +
Sbjct: 83 GQYGVQGFPTIKIFGAN 99
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 49.7 bits (119), Expect = 8e-09
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 34 FIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSIDLAIIDVEKNAELVHT 90
F VM+ V++ F+A WC C L P L K + +A +D N
Sbjct: 17 FDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQ 76
Query: 91 FEVKAVPAVLAVKNG 105
++V+ P + +G
Sbjct: 77 YKVEGFPTIYFAPSG 91
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 49.3 bits (118), Expect = 1e-08
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKK----MLGNSDSIDLAIIDVEKNA 85
N+ F V + V++ F+A WC C P+ +K + N I +A ID +
Sbjct: 23 NDGNFDNFVADKD-TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS 81
Query: 86 ELVHTFEVKAVPAVLAVKNGLVID 109
L F+V P + +K G +D
Sbjct: 82 MLASKFDVSGYPTIKILKKGQAVD 105
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 48.9 bits (117), Expect = 1e-08
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM-----LGNSDSIDLAIIDVEKN 84
++ F K+V+++ +V F+A WC C L P+ + LA +D N
Sbjct: 13 TDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN 72
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
L + ++ P + + G + G I + L + P
Sbjct: 73 QVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPP 123
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 47.7 bits (114), Expect = 1e-08
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKM-LGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103
I F + C C + + + D ID+ ID+ + E + + AVPA+
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI-- 61
Query: 104 NGLVIDKFIGLIENEMIENMVSKLL 128
NG+V +F+G E + ++ +
Sbjct: 62 NGVV--RFVGAPSREELFEAINDEM 84
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 50.1 bits (119), Expect = 2e-08
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 15 FNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSI 74
F + K + E + ++ V + F C C +D I
Sbjct: 111 NGIFHVSQRKPQLSEKTLELLQVVDIPIEIWV--FVTTSCGYCPSAAVMAWDFALANDYI 168
Query: 75 DLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKT 133
+ID +N +L F+V VP + V N V + F+G + + K K
Sbjct: 169 TSKVIDASENQDLAEQFQVVGVPKI--VINKGVAE-FVGAQPENAFLGYIMAVYEKLKR 224
Score = 47.0 bits (111), Expect = 2e-07
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 39 MNNPVPVIVNFHAEWCEPCHLLTPQLKKM------LGNSDSIDLAIIDVEKNAELVHTFE 92
PV + + A CE C LK+ D I L I + E +
Sbjct: 19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYG 78
Query: 93 VKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
V VP ++ + ++IGL +++ + + P
Sbjct: 79 VDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKP 121
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 50.3 bits (119), Expect = 2e-08
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKK----MLGNSDSIDLAIID--VEK 83
+ + V+ + V F A WC P K+ + +++LA++D E
Sbjct: 18 DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET 77
Query: 84 NAELVHTFEVKAVPAVLAVKNGL-----VIDKFIGLIENEMIENMVSKLLPKDKTNP 135
N+ + F + P V + G + ++ L T P
Sbjct: 78 NSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWP 134
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 49.9 bits (118), Expect = 3e-08
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 11 FKRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKM 67
E + E F + V N V++ F+A WC C L P +L +
Sbjct: 339 RYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEK 398
Query: 68 LGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105
L +I +A +D N ++ +EV+ P +
Sbjct: 399 LSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPAN 435
Score = 49.1 bits (116), Expect = 7e-08
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAEL 87
+N E I + + ++V F A WC L P+ + + LA +D N
Sbjct: 9 DNFESRISDTGSAGL-MLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNT 67
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMI 120
+ + V P + ++G + G + I
Sbjct: 68 CNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGI 100
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 49.8 bits (118), Expect = 3e-08
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 15 FNHFLERKFKSYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SD 72
+ I+ + F + V+ +V+F+A W P P+ + +
Sbjct: 647 LRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG 706
Query: 73 SIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105
+ +D + + +KA P+V +
Sbjct: 707 KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYE 739
Score = 47.8 bits (113), Expect = 2e-07
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 9/125 (7%)
Query: 18 FLERKFKSYIIE-NNEQFIKHVMNNP--VPVIVNFHAEWCEPCHLLTPQLKKM-LGNSDS 73
F+E ++ F + V +V+F++ W P +L P+ K+M +
Sbjct: 536 FIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL 595
Query: 74 IDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG-----LVIDKFIGLIENEMIENMVSKLL 128
I++ +D + V+ P + + + + L
Sbjct: 596 INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL 655
Query: 129 PKDKT 133
P+
Sbjct: 656 PQASI 660
Score = 47.4 bits (112), Expect = 2e-07
Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM-LGNSDSIDLAIIDVE 82
II + +N+ VNF++ H L P ++ + + ++
Sbjct: 115 DPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCG 174
Query: 83 KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131
+ L V + P++ ++G+ K+ G E + + +
Sbjct: 175 DDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST 223
Score = 47.1 bits (111), Expect = 3e-07
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNS--DSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101
P +V+F A W P L P+L+K + + +D + L + + ++A P +
Sbjct: 457 PWLVDFFAPWSPPSRALLPELRK-ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVV 515
Query: 102 VKNGLVIDKFIGLIENEMIENMVSKLLPKD 131
+ + + G E I + L
Sbjct: 516 FNQSSIHE-YEGHHSAEQILEFIEDLRNPS 544
Score = 42.8 bits (100), Expect = 9e-06
Identities = 12/122 (9%), Positives = 34/122 (27%), Gaps = 5/122 (4%)
Query: 18 FLERKFKSYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDS 73
F + +S + E + F+ + V + +C +L+
Sbjct: 215 FAMQHVRSTVTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGL 273
Query: 74 IDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKT 133
+++ +D + L + + A + D+ + + +
Sbjct: 274 VNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHN 333
Query: 134 NP 135
P
Sbjct: 334 LP 335
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 48.2 bits (114), Expect = 1e-07
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 24 KSYIIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSIDLAII 79
+I E + F K + N +V F+A WC C L+ + K L +
Sbjct: 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNC 75
Query: 80 DVEKNAELVHTFEVKAVPAVLAVKNG 105
D+ KN L ++V P ++ +
Sbjct: 76 DLNKNKALCAKYDVNGFPTLMVFRPP 101
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 45.4 bits (108), Expect = 2e-07
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKK----MLGNSDSIDLAII 79
+ +++ + + ++V F+A WC C L P+ K + I LA +
Sbjct: 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
Query: 80 DVEKNAELVHTFEVKAVPAVLAVKNG 105
D + ++L + V+ P + +NG
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNG 91
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 46.6 bits (110), Expect = 4e-07
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 34 FIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSIDLAIIDVEKNAELVHT 90
F + V V F+A WC C L P +L + + ++I +A +D N V
Sbjct: 259 FEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN--EVEA 316
Query: 91 FEVKAVPAVLAVKNG 105
+V + P +
Sbjct: 317 VKVHSFPTLKFFPAS 331
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 45.4 bits (107), Expect = 5e-07
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 19 LERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI 78
+K +S + + + ++V WC C + L +I+LAI
Sbjct: 32 FRQKLESNGLPSALTERLQRIERRYRLLV-AGEMWCPDCQINLAALDFAQRLQPNIELAI 90
Query: 79 IDVEKNAELVH---TFEVKAVPAVLAV-KNGLVIDKFI 112
I + + + E A+P VL + + ++ +F+
Sbjct: 91 ISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFV 128
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 44.2 bits (104), Expect = 6e-07
Identities = 9/106 (8%), Positives = 31/106 (29%), Gaps = 7/106 (6%)
Query: 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK- 83
+ + ++ + C C L ++ + + I+ E+
Sbjct: 12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-AHIYFINSEEP 70
Query: 84 -----NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124
+ + VP + + +G + + + + I++
Sbjct: 71 SQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 46.0 bits (108), Expect = 6e-07
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM--LGNSDSIDLAIIDV 81
S +++ + + V+ F A WC C + P+ K +I LA ID
Sbjct: 13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDC 72
Query: 82 EKNAELVHTFEVKAVPAVLAVKNG 105
+N +L + P++ KN
Sbjct: 73 TENQDLCMEHNIPGFPSLKIFKNS 96
Score = 45.2 bits (106), Expect = 1e-06
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 15 FNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQL----KKMLGN 70
E + S + + V + V+V ++A WC C L P
Sbjct: 349 SQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANA 408
Query: 71 SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105
+ + +A +D +N V ++ P ++ G
Sbjct: 409 TSDVLIAKLDHTEN--DVRGVVIEGYPTIVLYPGG 441
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 45.4 bits (107), Expect = 7e-07
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QL-KKMLGNSDSIDLAIID--VEK 83
+ V+ + V F A WC C P L + + ++ LA +D E
Sbjct: 18 QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET 77
Query: 84 NAELVHTFEVKAVPAVL-----AVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
N+ + F + P V + G + E ++ L T P
Sbjct: 78 NSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWP 134
Score = 30.0 bits (67), Expect = 0.22
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 22 KFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV 81
+ +E + F NN + + F + L + + + +
Sbjct: 139 PLEPAXLEEIDGFFAR--NNEEYLALIFEXGGSYLAREVALDLSQ----HKGVAVRRVL- 191
Query: 82 EKNAELVHTFEVKAVPAVLAVKNG 105
A +V F V P+ +
Sbjct: 192 NTEANVVRKFGVTDFPSCYLLFRN 215
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 44.2 bits (105), Expect = 8e-07
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM--LGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLA 101
++ F+A WC C L P+ + G +++A +DV + L F + A+P +
Sbjct: 24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYH 83
Query: 102 VKNGLVID 109
K+G
Sbjct: 84 CKDGEFRR 91
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 45.7 bits (108), Expect = 9e-07
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 30/119 (25%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-------EKNAELV-------- 88
V+++F A C C P + LA+I V EK V
Sbjct: 84 VVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLG 143
Query: 89 --------------HTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDK 132
+ + PA + G V G + + E +V +LL K
Sbjct: 144 ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAK 202
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 43.4 bits (103), Expect = 1e-06
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQL----KKMLGNSDSIDLAIIDVEKNA 85
F + + F+A WC C L P KK + +A +D
Sbjct: 11 TENNFDDTIAEGIT--FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER 68
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIG 113
+ + V+ P +L + G + + G
Sbjct: 69 NICSKYSVRGYPTLLLFRGGKKVSEHSG 96
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 44.4 bits (105), Expect = 1e-06
Identities = 16/122 (13%), Positives = 41/122 (33%), Gaps = 35/122 (28%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM------LGNSDSIDLAIIDV---EKNAELVHTF--- 91
VI+N +WC PC + L+ + GN D+ ++ + + + ++ F
Sbjct: 61 VVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTD 120
Query: 92 ----------------------EVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLL 128
+P + + K F+ + ++ + ++ L+
Sbjct: 121 NGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180
Query: 129 PK 130
+
Sbjct: 181 DE 182
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 44.3 bits (105), Expect = 1e-06
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 30/122 (24%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI--IDVEKNAELVHTF---------- 91
IVNF A WC PC P + ++ S I V + V +
Sbjct: 36 AYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPV 95
Query: 92 -----------------EVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDKT 133
+ +P + +G V +G + +V L
Sbjct: 96 MMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA 155
Query: 134 NP 135
Sbjct: 156 TK 157
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 45.0 bits (106), Expect = 1e-06
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 25 SYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP-------QLKKMLGNSDSIDLA 77
S I + + I ++NN +VNF+A+WC +L P +K+ N + + A
Sbjct: 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 78 IIDVEKNAELVHTFEVKAVPAVLAVKNG 105
+D ++++++ + + P + +NG
Sbjct: 65 RVDCDQHSDIAQRYRISKYPTLKLFRNG 92
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 43.9 bits (104), Expect = 2e-06
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 31/116 (26%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM----------------------------LGNSDSID 75
P ++ F A WC C P L ++ +
Sbjct: 32 PAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLL 91
Query: 76 LAIIDVEKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130
+ D + E+ F+V P V + G V+ F G E + + +
Sbjct: 92 ASDRD--RPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGAD 145
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 43.8 bits (104), Expect = 2e-06
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 25/115 (21%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---------------------- 81
V +NF WCEPC P + + S + I+ V
Sbjct: 28 GVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPV 87
Query: 82 --EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDKT 133
+ + +++ ++V +P + G V+ G + MI + ++ + P + +
Sbjct: 88 VLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGETS 142
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 43.2 bits (102), Expect = 2e-06
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 44 PVIVNFHAEWCEPCHLL------TPQLKKMLGNSDSIDLAI-IDVEKNAELVHTFEVKAV 96
PV+++ +A+WC C PQ++K L ++ + + + ++ L+ V +
Sbjct: 33 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGL 92
Query: 97 PAVLAV-KNG--LVIDKFIGLIENEMIENMVSKLLPKD 131
P +L G + G ++ E + P
Sbjct: 93 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHH 130
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 43.1 bits (102), Expect = 2e-06
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 25/110 (22%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTF------------ 91
P ++ F WC C+ P L ++ + ++ I + + +F
Sbjct: 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLN 85
Query: 92 ----------EVKAVPAVLAV-KNGLV--IDKFIGLIENEMIENMVSKLL 128
V PA + +G ++ + + + V+ L
Sbjct: 86 DADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 43.8 bits (102), Expect = 3e-06
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 30 NNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKM---------LGNSDSIDLAII 79
+ + F + P P IV F+ + C C K A +
Sbjct: 29 SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAV 88
Query: 80 DVEKNAELVHTFEVKAVPAVLAVKNG 105
+ +L +++ VP +
Sbjct: 89 NCASEVDLCRKYDINFVPRLFFFYPR 114
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 43.8 bits (103), Expect = 4e-06
Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPC------HLLTPQLKKM--LGNSDSID 75
+I N + K+V + + +H + + L+ + +
Sbjct: 12 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71
Query: 76 LAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
++D EK+A + + ++ K VI+ + ++E ++ L
Sbjct: 72 FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLED 125
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 42.3 bits (100), Expect = 6e-06
Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 29/118 (24%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM----------LG---NSDSIDLAIIDVEK------- 83
P +++F + C C PQ+ + + DL +++
Sbjct: 31 PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDI 90
Query: 84 --------NAELVHTFEVKAVPA-VLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDK 132
+ L FE + VPA + K G + G +M+E V+++L + +
Sbjct: 91 TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAETE 148
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 41.9 bits (99), Expect = 8e-06
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 26/115 (22%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---EKNAELVHTF--------- 91
++NF C C P++ K + + + ++ V E V +
Sbjct: 30 VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFT 89
Query: 92 -------------EVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDK 132
+ P + + K G ++ ++G + + +
Sbjct: 90 VMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSD 144
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 42.8 bits (100), Expect = 8e-06
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM---------LGNSDSI 74
K ++ E+ K V+ V+ ++ E + Q + + I
Sbjct: 10 KDRVVSLTEKNFKQVLKKY-DVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDI 68
Query: 75 DLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
++D +K A+L ++ +K I+ + ++E ++ +
Sbjct: 69 GFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLLDLIED 123
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 42.0 bits (98), Expect = 9e-06
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 19 LERKFKSYII-ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSI 74
L + F +I E K + +P++V H WC C L P + ++ S +
Sbjct: 22 LGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF 81
Query: 75 DLAIIDVEKNAELVH-TFEVKAVPAVLAV-KNGLVIDKFIG 113
+ ++ E+ + + + +P +L + +G V + I
Sbjct: 82 VMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIIN 122
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 41.7 bits (98), Expect = 1e-05
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 31/116 (26%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVE--------------------- 82
P ++ F A WC C Q +K ++ +I V
Sbjct: 40 PTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLN 99
Query: 83 ---------KNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLL 128
+ + P+ + K+G V G I ++
Sbjct: 100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN 155
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 40.8 bits (96), Expect = 1e-05
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 34 FIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM------LGNSDSIDLAIIDVEKNAEL 87
F VM+ V V ++ W + N + A ID EK ++
Sbjct: 25 FDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDV 84
Query: 88 VHTFEVKAVPAVLAVKNG 105
+ V P +
Sbjct: 85 IERMRVSGFPTMRYYTRI 102
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 41.1 bits (97), Expect = 1e-05
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 27/118 (22%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI--IDVEKNAELVHTF---------- 91
V ++F A WC PC P + +M + + ++++ F
Sbjct: 30 VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTV 89
Query: 92 ------------EVKAVPAVLAV-KNGLVIDKFIGLIEN--EMIENMVSKLLPKDKTN 134
VK +P + +NG V+ + +G E +E + L ++ +
Sbjct: 90 AFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEGH 147
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 41.0 bits (96), Expect = 1e-05
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLL------TPQLKKMLGNSDSIDLAIIDVEKNA 85
++ + P ++ F A WC C L + + + + + + + ++N
Sbjct: 19 KKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNL 78
Query: 86 ELVHTF---EVKAVPAVLAV-KNGLVIDKFIG 113
EL + +PAV+ V +G V G
Sbjct: 79 ELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKG 110
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 40.7 bits (96), Expect = 1e-05
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM-----------LGNSDSIDLAIIDVEK--------- 83
P ++ F A WC C P + ++ + D + V K
Sbjct: 27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL 86
Query: 84 ---NAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130
+ + F V PA V +G +D G + + + V+ L +
Sbjct: 87 ADTDGSVWANFGVTQQPAYAFVDPHG-NVDVVRGRMSQDELTRRVTALTSR 136
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 41.2 bits (97), Expect = 2e-05
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 24/112 (21%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI--IDVEKNA---------------- 85
V+VNF A WC C P + +++ + DL + ++VEK
Sbjct: 43 IVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSD 102
Query: 86 ---ELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEM--IENMVSKLLPKD 131
++ + +P V + G++ + G IE + + + + L
Sbjct: 103 ATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHH 154
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 40.8 bits (96), Expect = 2e-05
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 31/117 (26%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII------------------------- 79
I+ F C C TP+L + + + +
Sbjct: 34 TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLN 93
Query: 80 --DVEKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDKT 133
D + + + T+++ A P + + KN ++I K IG E +++ + + KT
Sbjct: 94 VRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIG---YENLDDFLVQYEKSLKT 147
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 40.1 bits (94), Expect = 2e-05
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 34 FIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM------LGNSDSIDLAIIDVEKNAEL 87
+ + V+++ V++ F+A WC C L P+ +++ D + +A +D N
Sbjct: 17 YNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-- 74
Query: 88 VHTFEVKAVPAVLAVKNG 105
E++ P + G
Sbjct: 75 -VPDEIQGFPTIKLYPAG 91
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 39.2 bits (91), Expect = 4e-05
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSD---SIDLAIIDV--EKNAELVHTFEVKAVPAV 99
++ F C C ++ +D + + + + L V P
Sbjct: 21 RLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTF 80
Query: 100 LAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
+ + + + G + M+++L+ +
Sbjct: 81 VLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 39.2 bits (92), Expect = 6e-05
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 26/110 (23%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV----------------------- 81
+ ++ A WC PC P LK++ D+ + +
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQL 92
Query: 82 --EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLL 128
+ + + + +P + + ++G +I + + ++LL
Sbjct: 93 HMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 39.2 bits (92), Expect = 6e-05
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 28/109 (25%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM-----------LG-NSDSIDLAIIDVEK-------- 83
I++F WC PC PQ + + N + + VE
Sbjct: 36 KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLT 95
Query: 84 -------NAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMV 124
EL+ + + +P + + G + IG + E ++
Sbjct: 96 FPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 39.2 bits (92), Expect = 7e-05
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 30/114 (26%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM-----------LGNS--DSIDLAIIDVEK------- 83
V + F A WC C P ++ S + + D +
Sbjct: 24 KVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDY 83
Query: 84 ---------NAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKL 127
+ +L+ T+ V++ P + K G ++ G +E + I + +L
Sbjct: 84 KNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 39.3 bits (92), Expect = 8e-05
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 29/118 (24%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-EKNAELVHTF----------- 91
IVN A WC PC P + K + ++ + ++ + F
Sbjct: 26 VRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW 85
Query: 92 ----------------EVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDK 132
V +P + G + + + + V K +
Sbjct: 86 RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR 143
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 38.9 bits (90), Expect = 8e-05
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 31 NEQFIKHVMNNPVPVIVNFHAE---WCEPCHLLT---PQLKKMLGNSDSIDLAIIDVEKN 84
+E + + + ++V F L P+L + A + E
Sbjct: 21 DEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR--LVAAEVAAEAE 78
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
L+ F V P++ V+ + + + + +L +
Sbjct: 79 RGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQPG 129
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 38.3 bits (89), Expect = 2e-04
Identities = 14/127 (11%), Positives = 39/127 (30%), Gaps = 38/127 (29%)
Query: 44 PVIVNFHAEWCEPCHLLT-PQLKKMLGNSDSIDLAII----------------------- 79
V+V C C PQ +K+ D + +I
Sbjct: 32 VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDE 91
Query: 80 -------------DVEKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVS 125
+ ++ + + ++ P+++ + G + G +++ ++ ++
Sbjct: 92 FGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLG 151
Query: 126 KLLPKDK 132
LL +
Sbjct: 152 SLLSETD 158
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 38.4 bits (90), Expect = 2e-04
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 28/117 (23%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---------------------- 81
VIVNF A WC PC P + ++ ++ V
Sbjct: 30 VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLP 89
Query: 82 ---EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIE--NMVSKLLPKDK 132
+ + + + VP + ++G+++ K +G +E + E ++ L K +
Sbjct: 90 VLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAR 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 2e-04
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 33/110 (30%)
Query: 18 FLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLA 77
F ERK K N +F +PV FH HLL P + DL
Sbjct: 409 FSERKLK---FSN--RF--------LPVASPFH------SHLLVPASDLINK-----DLV 444
Query: 78 IIDVE-KNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+V ++ +P V +G + G I +++ ++
Sbjct: 445 KNNVSFNAKDI-------QIP-VYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 36.6 bits (84), Expect = 0.002
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 35/128 (27%)
Query: 10 LFKRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEW------------CEPC 57
++ R NHF + S I++ I V+NNPV + ++F E E
Sbjct: 1645 VWNRADNHFKDTYGFS-ILD-----I--VINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 58 HLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHT-FEVKAVPAVLAV---------KNGLV 107
+ +K+ + + + L T F PA+ + GL+
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---TQPALTLMEKAAFEDLKSKGLI 1753
Query: 108 IDK--FIG 113
F G
Sbjct: 1754 PADATFAG 1761
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 37.7 bits (88), Expect = 2e-04
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 31/120 (25%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---------------------- 81
V+V+F C C TP L K I V
Sbjct: 31 YVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQ 90
Query: 82 -----EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDKTNP 135
+ +++ ++ + P ++ V G ++ K + + + N V K + K
Sbjct: 91 VLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR---GDDLYNTVEKFVNGAKEGH 147
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 37.0 bits (86), Expect = 5e-04
Identities = 13/126 (10%), Positives = 37/126 (29%), Gaps = 37/126 (29%)
Query: 44 PVIVNFHAEWCEPCHL-LTPQLKKM-----------LG-NSDSIDLAIIDVEK------- 83
+++ C C + P +K+ LG ++ +
Sbjct: 30 VIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHE 89
Query: 84 ----------------NAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSK 126
+ ++++ P++L + K G + G + ++ ++
Sbjct: 90 YRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIAT 149
Query: 127 LLPKDK 132
LL +
Sbjct: 150 LLGEAA 155
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB:
1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 37.0 bits (86), Expect = 5e-04
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM 67
V F A WC P TPQL +
Sbjct: 30 LVFFYFSASWCPPARGFTPQLIEF 53
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 36.6 bits (85), Expect = 7e-04
Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 29/116 (25%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV----------------------- 81
V+++F L+++ S I +
Sbjct: 38 VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRD 97
Query: 82 --EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
+ + + V +P+V V +N + + + + ++ + KLL +
Sbjct: 98 ANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENI---KDLDEAIKKLLEGHHHH 150
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 44 PVIVNFHAEWCEPCHLL------TPQLKKMLGNSDSIDLAIIDVEK--NAELVHTFEVKA 95
V+V FH+E C C + P + ++L +A + V+ EL + V
Sbjct: 21 MVMVYFHSEHCPYCQQMNTFVLSDPGVSRLL--EARFVVASVSVDTPEGQELARRYRVPG 78
Query: 96 VPAVL 100
P +
Sbjct: 79 TPTFV 83
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 35.5 bits (81), Expect = 0.002
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103
V + F ++ C + L K+ + + + ++D+ + + +E+ +V+
Sbjct: 44 VCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFY 103
Query: 104 NGLVIDKFIGLIENEMI 120
+ +G N I
Sbjct: 104 RNKHMMIDLGTGNNNKI 120
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 35.1 bits (80), Expect = 0.002
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 22 KFKSYIIENNEQFIKHV-MNNPVPVIVNFHAE-------WCEPCHLLTPQLKKMLGN-SD 72
+++ + E+F + V +N + F WC C P +++ L + S+
Sbjct: 3 RYEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE 62
Query: 73 SIDLAIIDVE-------KNAELVHTFEVKAVPAVLAVKNG 105
V N + +V AVP +L
Sbjct: 63 GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTP 102
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 35.4 bits (82), Expect = 0.002
Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 32/117 (27%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDV--------------------- 81
+++NF A WC+P +LK++ + + A++ +
Sbjct: 35 YLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWD 94
Query: 82 ------EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPKD 131
++E + + +P + + G ++ + I E + + +LL +
Sbjct: 95 QVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQ---GEALTGKLKELLKTE 148
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 35.1 bits (81), Expect = 0.002
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKM---LGNSDSIDLAIIDVEKNAELVHTF 91
V F A WC P TPQL + ++ +I +++AE +
Sbjct: 31 VFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY 80
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 35.3 bits (81), Expect = 0.002
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 44 PVIVNFHAEWCEPCHLL------TPQLKKMLGNSDSIDLAI-IDVEKNAELVHTFEVKAV 96
+++N C L +K ++ I + D E+ + +++
Sbjct: 44 WLMINIQNVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEEGQRYIQFYKLGDF 102
Query: 97 PAVLAV--KNGLVIDKFIGLIENEMIE 121
P V + + G + ++ L + ++
Sbjct: 103 PYVSILDPRTGQKLVEWHQLDVSSFLD 129
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 35.6 bits (81), Expect = 0.002
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 32 EQFIKHVMNNPVPV-IVNFHAEWCEPCHLLTPQLKKM-----LGNSDSIDLAIIDVEKNA 85
+ + + + V I C C + I ++ +N
Sbjct: 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP 186
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKDKTN 134
++ + V +VP++ NG ++ F+G+ E + V T
Sbjct: 187 DIADKYGVMSVPSI--AINGYLV--FVGVPYEEDFLDYVKSAAEGRLTV 231
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 34.7 bits (80), Expect = 0.003
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 30/96 (31%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLG--NSDSIDLAIIDV--------------------- 81
+ F A WC PC TP L M DS II V
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88
Query: 82 ------EKNAELVHTFEVKAVPAVLAV-KNGLVIDK 110
+ + + + +PA++ V K+G +I
Sbjct: 89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISM 124
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/116 (9%), Positives = 33/116 (28%), Gaps = 33/116 (28%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSI---DLAII---------------------- 79
++ F+ C C ++ + + L ++
Sbjct: 30 TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGW 89
Query: 80 ----DVEKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130
+ + ++++A P + + VI K + E + + ++ K
Sbjct: 90 IVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTSM---EQLIDYLATQAGK 142
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 34.8 bits (80), Expect = 0.003
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKM---LGNSDSIDLAIIDVEKNAELVHTFEVK 94
V F A WC PC TPQL + +S + ++ + ++ + + + K
Sbjct: 51 VFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAK 103
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 35.0 bits (81), Expect = 0.003
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 31/118 (26%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAI--IDVEKNAELVHTF-------- 91
V++ F A WC C P ++K + D+ D A+ ID ++ E V F
Sbjct: 35 VVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTY 94
Query: 92 ----------------EVKAVPAVLAV-KNGLVIDKFIGLIENEM--IENMVSKLLPK 130
+ + + + G ++ E E + ++++L +
Sbjct: 95 PLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINEMLKE 152
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 33.8 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKM 67
V + F A WC PC TP L +
Sbjct: 31 VFLYFSASWCPPCRGFTPVLAEF 53
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 33.5 bits (77), Expect = 0.008
Identities = 12/118 (10%), Positives = 42/118 (35%), Gaps = 34/118 (28%)
Query: 44 PVIVNFHAEWCEPCHLLT--PQLKKMLGN-SDSIDLAIIDV------------------- 81
+++NF A W + +L+++ + + ++ +
Sbjct: 35 SLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLD 94
Query: 82 --------EKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130
N+E+ + + +PA + + +G ++ K + E ++ + ++ +
Sbjct: 95 WEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLR---GEELKKKIENIVEE 149
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 33.1 bits (75), Expect = 0.012
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 44 PVIVNFHAEWCEPCHLLTPQ 63
P++V H E C+ L
Sbjct: 46 PLMVIHHLEDCQYSQALKKV 65
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 32.7 bits (75), Expect = 0.012
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM 67
++ + C C + LK
Sbjct: 33 YTLLFINNPGCHACAEMIEGLKAS 56
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 32.0 bits (73), Expect = 0.025
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLG--NSDSIDLAIIDVEKNAELVHTF 91
++NF A + QL + D I + I +++ +
Sbjct: 35 TLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTET 83
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 32.4 bits (74), Expect = 0.026
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 33/120 (27%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV---EKNAELVHTF--------- 91
++VN A WC PC P L ++ G + ++ + ++ E TF
Sbjct: 62 TLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRL 121
Query: 92 ------------EVKAVPAVLAV-------KNGLVIDKFIGLIE--NEMIENMVSKLLPK 130
++KA+ L + G I G E +E ++ K
Sbjct: 122 GYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK 181
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 31.9 bits (73), Expect = 0.034
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 23 FKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSID-LAIIDV 81
F +++ + + P +VN WC C + P+L ++ I + D
Sbjct: 39 FDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDD 98
Query: 82 EKNA-----ELVHTFE---------------VKAVPAVLAV-KNGLVIDKFIGLIENEMI 120
A EL + + V P + K G++ K +G+++ ++
Sbjct: 99 NAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVW 158
Query: 121 ENMVSKLLPK 130
++ L +
Sbjct: 159 REQLAPLYQQ 168
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 31.3 bits (71), Expect = 0.047
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKM 67
VI+ F A WC C + L ++
Sbjct: 39 VVILWFMAAWCPSCVYMADLLDRL 62
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 30.7 bits (70), Expect = 0.081
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 29/113 (25%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII-----DVEKNA-----ELVHTFE- 92
+VN A WC PCH P L ++ ++ D NA + F
Sbjct: 44 VSLVNVWASWCVPCHDEAPLLTEL---GKDKRFQLVGINYKDAADNARRFLGRYGNPFGR 100
Query: 93 --------------VKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLLPK 130
V VP V + G ++ K +G I + + +++ + K
Sbjct: 101 VGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.085
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 37/138 (26%)
Query: 27 IIENNEQFIKHVMNN-------PVPVIVNFHAEWCEPCHLL-TPQLKKMLGNSDSIDLAI 78
++E ++ + + N + + H+ E LL + + L + L
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLL- 251
Query: 79 IDVEKNAELVHTFEV----------KAVPAVLAVKNGLVI---DKFIGLIENEMIE---- 121
+V +NA+ + F + K V L+ I + L +E+
Sbjct: 252 -NV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 122 --NMVSKLLPKD--KTNP 135
+ + LP++ TNP
Sbjct: 310 YLDCRPQDLPREVLTTNP 327
Score = 27.1 bits (59), Expect = 2.0
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 38/106 (35%)
Query: 9 TLFKRCF-N-HFLERK-----------------------FKSYIIENNEQF------IKH 37
TLF+ F + FLE+K +K YI +N+ ++ I
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 38 VMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK 83
+ ++ + LL ++ M + + A V++
Sbjct: 551 FLPKIEENLIC-----SKYTDLL--RIALMAEDEAIFEEAHKQVQR 589
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 30.7 bits (70), Expect = 0.094
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 26/126 (20%)
Query: 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII---DVEKNA 85
+ + V+ PV++N A WC C L ++ ++ I + + D + A
Sbjct: 38 NPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQL--SAQGIRVVGMNYKDDRQKA 95
Query: 86 -----ELVHTFE---------------VKAVPAVLAV-KNGLVIDKFIGLIENEMIENMV 124
EL + + V P + NG++ + G + + E +
Sbjct: 96 ISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEI 155
Query: 125 SKLLPK 130
L K
Sbjct: 156 KPLWEK 161
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 30.3 bits (68), Expect = 0.10
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 44 PVIVNFH-AEWCEPCHLL------TPQLKKMLGNS---------DSIDLAIIDVEKNAEL 87
P+ + F ++WC C + + + K G +KN EL
Sbjct: 49 PIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQEL 108
Query: 88 VHTFEVKAVPAVL 100
++V P ++
Sbjct: 109 KAQYKVTGFPELV 121
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.4 bits (69), Expect = 0.17
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 49 FHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108
+++ C C + L M + I ID + V VPAV NG
Sbjct: 124 YYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAV--FVNGKEF 181
Query: 109 DKFIGLIENEMIENMVSKL 127
G + + +V+K+
Sbjct: 182 G--QGRMT---LTEIVAKV 195
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 28.9 bits (65), Expect = 0.38
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 6/79 (7%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLK-KMLGNSDSIDLAIIDVE 82
K+ I+ N H+ + A ++ DLAI+ V
Sbjct: 31 KNTIVTNK-----HIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVHVH 85
Query: 83 KNAELVHTFEVKAVPAVLA 101
+ + F A
Sbjct: 86 ETSTEGLNFNKNVSYTKFA 104
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 28.4 bits (63), Expect = 0.66
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 36 KHVMNNPVPVIVNFHAEWCEPCHLLTP-QLKKMLGNSDSIDLAIIDVEKNAELVHT 90
V+ V+V F ++ +L + +SD + +A + + + ++
Sbjct: 16 YKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNM 71
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 27.6 bits (60), Expect = 1.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 26 YIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCH 58
Y+ E+ ++ H M +P+ + C CH
Sbjct: 324 YVREDGKKISSHWMTSPMK---DPEMRACRQCH 353
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A
2qke_A 1vgl_A
Length = 105
Score = 26.7 bits (59), Expect = 1.5
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 75 DLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIG--------LIENEMIENMVSK 126
L +IDV KN +L ++ A P LA + K IG LI +++ + + +
Sbjct: 41 ALKVIDVLKNPQLAEEDKILATPT-LAKILPPPVRKIIGDLSDREKVLIGLDLLYDEIRE 99
Query: 127 LLPKDK 132
+D+
Sbjct: 100 REAEDQ 105
>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein,
thioredoxin fold, transferase; NMR {Synechococcus
elongatus} SCOP: c.47.1.15 PDB: 1t4z_A
Length = 105
Score = 26.5 bits (58), Expect = 1.8
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 63 QLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102
+ + + I L +I+V +LV + + PA++ +
Sbjct: 34 NILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKI 73
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 27.3 bits (60), Expect = 1.9
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 6 FQSTLFKRCFNHFLERKFKSYIIENNEQFIKHVMNNP-------VPVIVNFHAEWC-EPC 57
++ +R LE+KF +++ N ++ + P V + H C
Sbjct: 206 IRTLCHRR--LVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQK 263
Query: 58 HLLTPQLKKMLGNSDSI 74
HLL K+ D +
Sbjct: 264 HLLRFIKSKLRKEPDEV 280
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 25.4 bits (55), Expect = 5.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 44 PVIVNFHAEWCEPCHLL 60
PV+++F C C +
Sbjct: 49 PVMLDFTGYGCVNCRKM 65
>2j7a_A Cytochrome C nitrite reductase NRFA; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_A*
Length = 500
Score = 25.7 bits (55), Expect = 6.0
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCH 58
++ ++ H +P+ + C CH
Sbjct: 303 DDKKKISSHWWTSPMK---DPEMRACRQCH 329
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 25.5 bits (56), Expect = 6.6
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 68 LGNSDSI---------DLAIIDVEKNAELVHTFEVKAVPAVLAVKNG-LVIDK 110
+G + DL I + + + V V V +KNG +V+++
Sbjct: 365 IGKGEEAGQLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQV--MKNGTIVVNR 415
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 25.4 bits (56), Expect = 7.9
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 99 VLAVKNGLVIDKFIGLIENEMIENM 123
A+ NG F GL +E + ++
Sbjct: 604 PYAIHNG-----FSGLARHESVRSI 623
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 25.3 bits (56), Expect = 7.9
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 99 VLAVKNGLVIDKFIGLIENEMIENM 123
A+ NG + GL +E + ++
Sbjct: 426 PYAIYNG-----WSGLARHESVRSL 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,015,987
Number of extensions: 111002
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 178
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)