RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6819
(135 letters)
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 68.9 bits (168), Expect = 5e-16
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 21 RKFKSYI-IENNEQFIKHVMN--NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLA 77
++ +E EQF++ + ++VN + + C L L+ + +
Sbjct: 96 PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC 155
Query: 78 IIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIEN-------EMIENMVSK 126
I F +P +L K G +I FI + E +E+ +++
Sbjct: 156 KIRASNT-GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE 210
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 56.3 bits (135), Expect = 5e-12
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Query: 27 IIENNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNA 85
+ ++ F + +V F C PC + P M +DV +
Sbjct: 5 PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ 64
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
T + A P +N + ID++ G +E + + L
Sbjct: 65 GTAATNNISATPTFQFFRNKVRIDQYQGADAVG-LEEKIKQHL 106
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 56.0 bits (134), Expect = 6e-12
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 27 IIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKN 84
+I + +F V+ PV+V F A WC PC L++P + SD + + ++++ N
Sbjct: 4 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN 63
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
V ++V+ VPA+ VK ++D G+I + + + + L
Sbjct: 64 PTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 107
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 56.0 bits (134), Expect = 8e-12
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 27 IIE-NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKN 84
II ++ F V+ ++V+F AEWC PC ++ P L ++ + +A +++++N
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 85 AELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++ +P +L KNG V +G + ++ + L
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 52.8 bits (126), Expect = 9e-11
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 28 IENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
IE+ F + + V+V+F A WC PC ++ P + ++ +DV+ +
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ EVK +P K G + +F G + E +E +++L+
Sbjct: 65 VASECEVKCMPTFQFFKKGQKVGEFSGANK-EKLEATINELV 105
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 52.2 bits (124), Expect = 2e-10
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL 87
+E + ++ + V+V+F A WC PC + P + ++ +D ++ +
Sbjct: 14 VETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSV 73
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++A+P + +K G ++DK +G ++E +++ ++K L
Sbjct: 74 ASDWAIQAMPTFMFLKEGKILDKVVGAKKDE-LQSTIAKHL 113
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 52.1 bits (124), Expect = 3e-10
Identities = 20/99 (20%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 28 IENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAEL 87
++ ++ + + ++V+F A WC PC ++ P ++ ++ +DV++ +
Sbjct: 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAV 71
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSK 126
+ V+A+P + +K+G ++DK +G ++ + +V+K
Sbjct: 72 AEEWNVEAMPTFIFLKDGKLVDKTVGADKDG-LPTLVAK 109
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 51.3 bits (122), Expect = 4e-10
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM-LGNSDSIDLAIIDVEKNA 85
+ + + + PV+V+F A WC PC ++ P L++ ++D + +A ++V++N
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
E F + ++P ++ K G + + IG E +E ++ +L
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL 104
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 51.1 bits (122), Expect = 5e-10
Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 8 STLFKRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM 67
S L++R L R ++ + +IK V + + +++ + ++
Sbjct: 2 SALWQR----LLTRGWQPVEASTVDDWIKRVGDGVI--LLSSDPRRTPEVSDNPVMIAEL 55
Query: 68 LG--NSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVS 125
L +A+ D+E++ + F V+ PA L +G + G+ + ++
Sbjct: 56 LREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMR 115
Query: 126 KLL 128
++
Sbjct: 116 SIV 118
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 50.7 bits (120), Expect = 8e-10
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELV 88
N++ F V+ + VPV+V+F A WC PC ++ P + ++ G D + ++ +++ +
Sbjct: 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVA 66
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++++P ++ K G + IG + I V K L
Sbjct: 67 SEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 51.2 bits (122), Expect = 8e-10
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
Query: 19 LERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG--NSDSIDL 76
L R + + ++ V+++ + + ++L + +
Sbjct: 15 LARGWTPVSESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQV 72
Query: 77 AIIDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLPKD 131
AI D+E++ + F V PA L G G+ + N++ L+
Sbjct: 73 AIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 48.6 bits (115), Expect = 5e-09
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 30 NNEQFIKHVMN-NPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-EKNAEL 87
N + F V PV+++ +WC PC + P+ +K+ + +D ++N L
Sbjct: 12 NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL 71
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121
++ VP +K V+ + G ++++E
Sbjct: 72 AKELGIRVVPTFKILKENSVVGEVTGAKYDKLLE 105
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 47.1 bits (111), Expect = 2e-08
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAE 86
I+ + +F +++ VIV+F AEWC PC + P ++ + +DV++ +E
Sbjct: 4 IVTSQAEF-DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE 62
Query: 87 LVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIE 121
+ + ++P KNG +D +G ++ + +
Sbjct: 63 VTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQ 97
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 47.1 bits (111), Expect = 2e-08
Identities = 19/110 (17%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 19 LERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI 78
+ ++ S + + + +++M+ + + F A WC PC + ++K+ ++ A
Sbjct: 3 MRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAK 62
Query: 79 IDVEKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+D + N+E+V V +P + ++G ++ IG + + ++
Sbjct: 63 VDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGM-LRQKLRDII 111
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 46.4 bits (109), Expect = 3e-08
Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAEL 87
+ + P++V+F A WC PC ++ P + + + + + +DV+ A +
Sbjct: 11 AAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAV 70
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLLP 129
+ A+P K+G+ D +G +++ ++ +V+K
Sbjct: 71 AEAAGITAMPTFHVYKDGVKADDLVGASQDK-LKALVAKHAA 111
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 45.7 bits (107), Expect = 5e-08
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-NSDSIDLAIIDVEKNAELV 88
N+ + + V+ + VPV+V+F A WC PC L+ P + ++ S I + ++ ++ +
Sbjct: 5 NDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIA 64
Query: 89 HTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++++P VL KNG + IG + + + + K L
Sbjct: 65 TQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 104
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 44.4 bits (104), Expect = 2e-07
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM----LGNSDSIDLAII 79
+ +++ + + ++V F+A WC C L P+ K I LA +
Sbjct: 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
Query: 80 DVEKNAELVHTFEVKAVPAVLAVKNGLVID--KFIGLIENEMIENMVSKLL 128
D + ++L + V+ P + +NG ++ E + I N + K
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 42.0 bits (98), Expect = 9e-07
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV-EKNAELVHTFEVKAVPAVLAVK 103
I F + C C + + + + E + + AVPA+
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAING 63
Query: 104 NGLVIDKFIGLIENEMIENMVSKLL 128
+F+G E + ++ +
Sbjct: 64 VV----RFVGAPSREELFEAINDEM 84
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 42.5 bits (99), Expect = 9e-07
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKM---LGNSDSIDLAIIDVEKNAE 86
+ + + V+++ V++ F+A WC C L P+ +++ S+ D +I
Sbjct: 8 VAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA 67
Query: 87 LVHTFEVKAVPAVLAVKNGLVID--KFIGLIENEMIENMVSK 126
E++ P + G + G E + +++
Sbjct: 68 NDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 42.0 bits (98), Expect = 1e-06
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 40 NNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAV 99
N +PV+ F C C L+ + + I + +N+ ++
Sbjct: 13 NRALPVLTLFTKAPCPLCDEAKEVLQP-YKDRFILQEVDITLPENSTWYERYKFDIPVFH 71
Query: 100 LAVKNGLVIDKFIGLIENEMIENMVSKLL 128
L + + + +E + KL
Sbjct: 72 LNGQ-----FLMMHRVNTSKLEKQLRKLS 95
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 42.0 bits (98), Expect = 2e-06
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 28 IENNEQFIKHVMNN-PVPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNA 85
+ N Q + +++ V++ F +W C + L + + + ++D+ +
Sbjct: 7 LHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP 66
Query: 86 ELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMI 120
+ +E+ V+ I +G N I
Sbjct: 67 DFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI 101
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 40.7 bits (94), Expect = 4e-06
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG-----NSDSIDLAIIDV 81
+++ +Q I+++ + V I+ F C C L K I +++
Sbjct: 2 LMDETKQAIRNI-DQDV-RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 59
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ E + V AVP ++ NG +F G +M + L
Sbjct: 60 IEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 106
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 39.9 bits (92), Expect = 1e-05
Identities = 9/104 (8%), Positives = 29/104 (27%), Gaps = 5/104 (4%)
Query: 27 IIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEK--- 83
+ + ++ + C C L ++ + + I E
Sbjct: 11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70
Query: 84 --NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVS 125
+ + VP + + +G + + + + I++
Sbjct: 71 NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG 114
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 111
Score = 38.4 bits (88), Expect = 3e-05
Identities = 19/104 (18%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 26 YIIENNEQFIKHVMNNP-VPVIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEK 83
Y +++ + V+++F A WC PC +++P+L ++ +D++ + +DV++
Sbjct: 8 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67
Query: 84 NAELVHTFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127
++ + + ++P + +KNG+ +++F G + + + + +
Sbjct: 68 CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 111
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 38.5 bits (88), Expect = 4e-05
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 29 ENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELV 88
+ + V+ PV++N A WC L ++ + ++ +
Sbjct: 7 NPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAIS 66
Query: 89 HTFEVKAVPAVLAV----------------------KNGLVIDKFIGLIENEMIENMVSK 126
E+ A+ NG++ + G + + E +
Sbjct: 67 WLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP 126
Query: 127 LLPK 130
L K
Sbjct: 127 LWEK 130
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 37.2 bits (85), Expect = 6e-05
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 45 VIVNFHAEWCEPCHLLTPQLKKMLGN-SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVK 103
I F + C C ++++ D++++ I+V +N + + + AVP ++
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64
Query: 104 NGLVIDKFIGLIENEMIENMVSKLL 128
+ +FIG E + + K L
Sbjct: 65 DV----EFIGAPTKEALVEAIKKRL 85
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
containing protein Txnl5) {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 37.1 bits (85), Expect = 1e-04
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 23 FKSYIIENNEQFIKHVMNNP-VPVIVNFHAE-------WCEPCHLLTPQLKKMLGN-SDS 73
++ + E+F + V + + F WC C P +++ L + S+
Sbjct: 1 YEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG 60
Query: 74 IDLAIIDVEKNAELVH-------TFEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVS 125
V + +V AVP +L + + L + ++E + S
Sbjct: 61 CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECL-QANLVEMLFS 118
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 37.6 bits (86), Expect = 1e-04
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 24/132 (18%)
Query: 19 LERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAI 78
+K +S + + + ++ WC C + L +I+LAI
Sbjct: 32 FRQKLESNGLPSALTERLQRIERRY-RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAI 90
Query: 79 IDVEKNAELVHTFEVKAV-----------------------PAVLAVKNGLVIDKFIGLI 115
I + + + AVL + G
Sbjct: 91 ISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQALAAYKAGDY 150
Query: 116 ENEMIENMVSKL 127
I ++++ +
Sbjct: 151 LEHAIGDVLAII 162
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 36.8 bits (84), Expect = 2e-04
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 29/113 (25%)
Query: 44 PVIVNFHAEWCEPC----HLLTPQLKKMLGNSDSIDLAIIDVE----------------- 82
P +++F + C C + K + + + + E
Sbjct: 31 PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDI 90
Query: 83 -------KNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKL 127
+ L FE + VPA K G + G +M+E V+++
Sbjct: 91 TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 35.1 bits (80), Expect = 6e-04
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 10/93 (10%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP-QLKKMLGNSDS------IDLAIIDVE 82
+ F K V P +V F K + + +
Sbjct: 8 DELSFEKTVERFP-YSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGEL 66
Query: 83 KNAELVHTFE--VKAVPAVLAVKNGLVIDKFIG 113
+N L ++ K P++ K +
Sbjct: 67 ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLP 99
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 35.2 bits (80), Expect = 7e-04
Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLG--NSDSIDLAIIDVEKNAEL 87
+ + V + V+V ++A WC C L P +++ + + D+ I ++
Sbjct: 18 VGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND 77
Query: 88 VHTFEVKAVPAVLAVKNGLVIDKFI--GLIENEMIENMVSKLLPKDKTNP 135
V ++ P ++ G + + G + + + + + D
Sbjct: 78 VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGK 127
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 34.5 bits (78), Expect = 0.001
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 24 KSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGN--SDSIDLAIIDV 81
S +++ + + V+ F A WC C + P+ K +I LA ID
Sbjct: 9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDC 68
Query: 82 EKNAELVHTFEVKAVPAVLAVKNGLVID--KFIGLIENEMIENMVSKLL 128
+N +L + P++ KN V + + G E I + K
Sbjct: 69 TENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS 117
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 34.4 bits (78), Expect = 0.001
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP---QLKKMLGNSDSIDLAIIDVEKNAELV 88
E K + +P++V H WC C L P + ++ S + + ++ E+ +
Sbjct: 15 EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDE 74
Query: 89 HTFEVKAVPAVLAV--KNGLVIDKFIG 113
+ +G V + I
Sbjct: 75 DFSPDGGYIPRILFLDPSGKVHPEIIN 101
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 33.8 bits (77), Expect = 0.002
Identities = 13/107 (12%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 30 NNEQFIKHVMNNPVPVIVNFHAEWC-----EPCHLLTPQLKKMLGN-SDSIDLAIIDVEK 83
+ F K + + V+V F ++ + L + ++ +
Sbjct: 10 DTVTFYKVIPKSK-FVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKL 68
Query: 84 NAELVHTFE--VKAVPAVLAVKNGLVID--KFIGLIENEMIENMVSK 126
N EL ++ ++ P ++G + + G ++ I+ +
Sbjct: 69 NMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG 115
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 33.7 bits (76), Expect = 0.002
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 31/116 (26%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAII------------------------ 79
P ++ F A WC C Q +K ++ +I
Sbjct: 25 PTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLN 84
Query: 80 ------DVEKNAELVHTFEVKAVPAVLAV-KNGLVIDKFIGLIENEMIENMVSKLL 128
+ + + + P+ + K+G V G I ++
Sbjct: 85 YPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN 140
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 32.2 bits (73), Expect = 0.006
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 39 MNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDV--EKNAELVHTFEVKAV 96
M NPV +IV + C+ C L ++++ +D + I+D + EL + +
Sbjct: 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRA 79
Query: 97 PAVLAVKNG 105
PA ++G
Sbjct: 80 PATTITQDG 88
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 31.2 bits (70), Expect = 0.011
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 32 EQFIKHVMNNPVPV-IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHT 90
+ ++ + + +++ C C + L M + I ID +
Sbjct: 4 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITE 63
Query: 91 FEVKAVPAVLAVKNGLVIDKFIGLIENEMIENMV 124
V VPAV NG G + I V
Sbjct: 64 RNVMGVPAV--FVNGKEF--GQGRMTLTEIVAKV 93
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE)
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 144
Score = 29.3 bits (64), Expect = 0.080
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 23/110 (20%)
Query: 44 PVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPA----- 98
+VN A WC PCH P L ++ + + I + P
Sbjct: 33 VSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGV 92
Query: 99 ------------------VLAVKNGLVIDKFIGLIENEMIENMVSKLLPK 130
+ + G ++ K +G I + + +++ + K
Sbjct: 93 DANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK 142
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 29.0 bits (64), Expect = 0.11
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 29/96 (30%)
Query: 44 PVIVNFHAEWCEPCHLLTPQ---------------------------LKKMLGNSDSIDL 76
V F A WC P TPQ K + L
Sbjct: 30 TVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLAL 89
Query: 77 AIIDVEKNAELVHTFEVKAVPAVLAVK--NGLVIDK 110
D + L F+VK++P ++ V+ +G +I
Sbjct: 90 PFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITT 125
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 28.6 bits (63), Expect = 0.15
Identities = 12/97 (12%), Positives = 24/97 (24%)
Query: 32 EQFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTF 91
E + +++N C L + + I I + +
Sbjct: 32 ETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQ 91
Query: 92 EVKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKLL 128
+ ++D G E + VS L
Sbjct: 92 RYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFL 128
>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB
{Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}
Length = 90
Score = 25.8 bits (57), Expect = 1.0
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 63 QLKKMLGN--SDSIDLAIIDVEKNAELVHTFEVKAVPAVLAV 102
LK +L L +IDV KN +L ++ A P + +
Sbjct: 21 TLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLSKI 62
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 134
Score = 26.2 bits (56), Expect = 1.0
Identities = 11/95 (11%), Positives = 23/95 (24%)
Query: 33 QFIKHVMNNPVPVIVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFE 92
+ + L + N + + + + F
Sbjct: 39 TCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFG 98
Query: 93 VKAVPAVLAVKNGLVIDKFIGLIENEMIENMVSKL 127
V PA V +D G + + + V+ L
Sbjct: 99 VTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL 133
>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
N-terminal domain {Synechococcus elongatus [TaxId:
32046]}
Length = 105
Score = 25.5 bits (56), Expect = 1.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 72 DSIDLAIIDVEKNAELVHTFEVKAVPAVL 100
I L +I+V +LV + + PA++
Sbjct: 43 VPISLQVINVADQPQLVEYYRLVVTPALV 71
>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable
4-imidazolone-5-propanoate amidohydrolase GOS_1928421
{Environmental samples}
Length = 103
Score = 25.1 bits (55), Expect = 1.6
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 75 DLAIIDVEKNAELVHTFEVKAVPAVLAVKNGLVI 108
D + + AEL + V + + V NG
Sbjct: 70 DFLVWNCGHPAELSYLIGVDQLVSR--VVNGEET 101
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 24.6 bits (53), Expect = 2.4
Identities = 14/68 (20%), Positives = 20/68 (29%)
Query: 46 IVNFHAEWCEPCHLLTPQLKKMLGNSDSIDLAIIDVEKNAELVHTFEVKAVPAVLAVKNG 105
V F C C +K+ D +D+ + KA V V
Sbjct: 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI 62
Query: 106 LVIDKFIG 113
V + IG
Sbjct: 63 FVDQQHIG 70
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 24.6 bits (53), Expect = 4.2
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 17 HFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPCHLLTP 62
K + + N+ + + V +A + C + P
Sbjct: 57 KLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAP 102
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 24.4 bits (52), Expect = 4.7
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 68 LGNSDSIDLAIIDVEKNAELVHTFEV 93
LG+ ++D+ ++++ K+AE + +
Sbjct: 167 LGSGSNVDVCVMEIGKDAEYLRNYLT 192
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA
{Bacillus subtilis [TaxId: 1423]}
Length = 137
Score = 24.0 bits (50), Expect = 5.4
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 103 KNGLVIDKFIGLIENEMIENMVSKLLP 129
G V+ G + MI + ++ + P
Sbjct: 111 PEGKVVKVVTGTMTESMIHDYMNLIKP 137
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 227
Score = 24.1 bits (51), Expect = 7.6
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 11 FKRCFNHFLERKFKSYIIENNEQFIKHVMNNPVPVIVNFHAEWCEPC 57
F + + + E + +K ++ PV++ + P
Sbjct: 145 FIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPV 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 504,772
Number of extensions: 22471
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 64
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)