BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy682
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 164/269 (60%), Gaps = 20/269 (7%)
Query: 42 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
SPMMFS + +D+C LKF NSP+ H++ANTY L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3201 SPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3260
Query: 102 SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
S+QSPSYAE+P SP N PLT+DP+L H T+NN+ +RHLGDNFSQ L++R NCFVT
Sbjct: 3261 SVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVT 3320
Query: 161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
TVDSRFL+ACGFWDNSFR F T + + F H F ++ ++ TSD +
Sbjct: 3321 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3375
Query: 221 TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
+ D LL +S+ +P + + E +V++ E G + + + NG
Sbjct: 3376 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGP 3435
Query: 268 RLRHESHNDNLQELI-PELFFLPEMLVNS 295
L H + D L+ L P F PE++ S
Sbjct: 3436 VLIHTTFGDLLRSLDPPAEFHSPELITMS 3464
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 56/63 (88%)
Query: 217 VKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHND 276
V +HTTFGDLLRSLDPP+ F SPE + MSREG IV+NY++G++AA+T+NG +LRHE+HND
Sbjct: 3436 VLIHTTFGDLLRSLDPPAEFHSPELITMSREGFIVINYDKGNVAAYTINGKKLRHETHND 3495
Query: 277 NLQ 279
NLQ
Sbjct: 3496 NLQ 3498
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 75/152 (49%), Gaps = 61/152 (40%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFAS 238
EPFTTM+LALQ GKFD+P+RLFSS+SL+WKNCQRDTSDVK +L+ P +
Sbjct: 3024 EPFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVK------ELI-----PEWYFL 3072
Query: 239 PESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGY 298
PE + +G RL H
Sbjct: 3073 PEMF-------------------YNSSGYRLGHR-------------------------- 3087
Query: 299 CLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
ED ++++ELPPWA SPE+FVRINRM
Sbjct: 3088 -----EDGALVDDIELPPWAKSPEEFVRINRM 3114
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST 48
M+ GD+GIVEVWRTFNLA LYAFP+C++ +RSLAL+HDQKY ST
Sbjct: 3510 MTAGDRGIVEVWRTFNLAPLYAFPACNAGIRSLALTHDQKYLLAGLST 3557
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 39/281 (13%)
Query: 40 KYSPMMFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN-- 96
+ SP+MF+ DV M LKFPSNSP+ HV ANT L MP+V+TVTAN FA+N+W+
Sbjct: 2487 QASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNL 2546
Query: 97 PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN 156
P + ++Q Y LP+ +DP++ T + +R + D Q ++V
Sbjct: 2547 PAHQGAVQDQPY---------QLPVEIDPLIACGTGTH-----RRQVTDLLDQSIQVHSQ 2592
Query: 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC---- 210
CFV T D+R++L CGFWD SFR T +Q G +D L S S NC
Sbjct: 2593 CFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILS 2652
Query: 211 -QRDTSDVKVH-----TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAA 261
RD + + + + GD +P A+P +++ + I V E G + +
Sbjct: 2653 GSRDATLLLWYWNGKSSGIGD-----NPGGETATPRAILTGHDYEITCAAVCAELGLVLS 2707
Query: 262 FTMNGNRLRHESHNDNLQELI-PELFFLPEMLVNS-NGYCL 300
+ G L H + D L+ L PE P+++ S G+C+
Sbjct: 2708 GSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2748
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
+++ELIPE ++LPEM VN N Y LG +D +++VELPPWA + E+FVRINR+
Sbjct: 2349 DIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRL 2402
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFTT +L LQ GKFDH +R FSS+S AW+N QRDTSD+K
Sbjct: 2312 EPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIK 2351
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQK 40
++GGD G+V V + +L L+A+P CD+ +R++ALS DQ+
Sbjct: 2788 LTGGDNGVVIVRQVSDLKQLFAYPGCDAGIRAMALSFDQR 2827
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN 267
+H+ GDLLR+L+ P P+ + SREG V+ YE G F++NG
Sbjct: 2716 IHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGCFCTFSVNGK 2764
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 33/278 (11%)
Query: 42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
SP+MF + DV M LKFPSNSP+ HV ANT L +P+VVTVT + FA+NRW+ +
Sbjct: 2565 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWH-NTV 2623
Query: 101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
+P Y+ +LP+ +DP++ NN+ V KR + D Q +++ +CFV
Sbjct: 2624 GLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2675
Query: 161 TVDSRFLLACGFWDNSFREPFTTMYLALQE---GKFDHPNRLFSSISLAWKNC-----QR 212
T D+R++L CGFWD SFR ++T L + G +D L S S +C R
Sbjct: 2676 TADNRYILICGFWDKSFR-VYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSR 2734
Query: 213 DTSDV-----KVHTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTM 264
D + + H GD S D P +P +V+ + +V V E G + +
Sbjct: 2735 DATLLLWYWSGRHHIIGDNPNSSDYP----APRAVLTGHDHEVVCVSVCAELGLVISGAK 2790
Query: 265 NGNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
G L H D L+ L PE P ++ V+S G+C+
Sbjct: 2791 EGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2828
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
+++ELIPE ++LPEM VNSNGY LG ED V +N+V+LPPWA PE FVRINRM
Sbjct: 2420 DVKELIPEFYYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRM 2473
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFTT +L +GKFDHP+R FSSI+ +W+ QRDTSDVK
Sbjct: 2383 EPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVK 2422
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQK 40
++GGD G+VEVW+ + LY +P CD+ +R++ LSHDQ+
Sbjct: 2868 VTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQR 2907
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNL 278
VHT GDLLR+L+ P P + +S EG ++ YERG + F++NG L ND+
Sbjct: 2796 VHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDST 2855
Query: 279 QELI 282
+ ++
Sbjct: 2856 RAIL 2859
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 33/278 (11%)
Query: 42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
SP+MF + DV M LKFPSNSP+ HV ANT L +P+VVTVT + FA+NRW+ +
Sbjct: 2575 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWH-NTV 2633
Query: 101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
+P Y+ +LP+ +DP++ NN+ V KR + D Q +++ +CFV
Sbjct: 2634 GLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2685
Query: 161 TVDSRFLLACGFWDNSFREPFTTMYLALQE---GKFDHPNRLFSSISLAWKNC-----QR 212
T D+R++L CGFWD SFR ++T L + G +D L S S +C R
Sbjct: 2686 TADNRYILICGFWDKSFR-VYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSR 2744
Query: 213 DTSDV-----KVHTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTM 264
D + + H GD S D P +P +V+ + +V V E G + +
Sbjct: 2745 DATLLLWYWSGRHHIIGDNPNSSDYP----APRAVLTGHDHEVVCVSVCAELGLVISGAK 2800
Query: 265 NGNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
G L H D L+ L PE P ++ V+S G+C+
Sbjct: 2801 EGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2838
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
+++ELIPE ++LPEM VNSNGY LG ED V +N+V+LPPWA PE FVRINRM
Sbjct: 2430 DVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRM 2483
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQK 40
++GGD G+VEVW+ + LY +P CD+ +R++ LSHDQ+
Sbjct: 2878 VTGGDNGVVEVWQACDFKQLYIYPGCDAGIRAMDLSHDQR 2917
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNL 278
VHT GDLLR+L+ P P + +S EG ++ YERG + F++NG L ND+
Sbjct: 2806 VHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDST 2865
Query: 279 QELI 282
+ ++
Sbjct: 2866 RAIL 2869
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 39/281 (13%)
Query: 40 KYSPMMFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN-- 96
+ SP+MF+ DV M LKFPSNSP+ HV ANT L P+V+TVTAN FA+N+W+
Sbjct: 2494 QVSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNL 2553
Query: 97 PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN 156
P + ++Q Y LP+ +DP++ +N + +R + D Q ++V
Sbjct: 2554 PAHQGAVQDQPY---------QLPVEIDPLIA-----SNTGMHRRQITDLLDQSIQVHSQ 2599
Query: 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC---- 210
CFV T D+R++L CGFWD SFR T +Q G +D L S S NC
Sbjct: 2600 CFVITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILS 2659
Query: 211 -QRDTSDVKVH-----TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAA 261
RD + + + + GD +P S A+P +++ + + V E G + +
Sbjct: 2660 GSRDATLLLWYWNGKCSGIGD-----NPGSETAAPRAILTGHDYEVTCAAVCAELGLVLS 2714
Query: 262 FTMNGNRLRHESHNDNLQELI-PELFFLPEMLVNS-NGYCL 300
+ G L H + D L+ L PE P+++ S G+C+
Sbjct: 2715 GSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2755
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
+++ELIPE ++LPEM VN N Y LG +D +++VELPPWA + E+FV INR+
Sbjct: 2356 DIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRL 2409
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 33/40 (82%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFTT +L LQ GKFDH +R FSSIS AW+N QRDTSD+K
Sbjct: 2319 EPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIK 2358
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 32/40 (80%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQK 40
++GGD+G+V V + +L L+A+P CD+ +R++ALS+DQ+
Sbjct: 2795 LTGGDRGVVVVRQVSDLKQLFAYPGCDAGIRAMALSYDQR 2834
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNL 278
+H+ GDLLR+L+ P P+ + SREG V+ YE G F++NG +DN+
Sbjct: 2723 IHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLFCTFSVNGKLQATMETDDNI 2782
Query: 279 QEL 281
+ +
Sbjct: 2783 RAI 2785
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 131/255 (51%), Gaps = 17/255 (6%)
Query: 42 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA- 100
+P MF DD+CM +K+ SNSP+ ++ ANT+ L P+VV V N F++N+W+ Y+
Sbjct: 2137 APTMFRRHDDDLCMMMKYISNSPVVYLAANTFHQLPHPTVVGVAQNLVFSLNKWDNSYSY 2196
Query: 101 ASIQSPSYAETPGSPPGN--LPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 158
S Q + + P + G LPLT DP L T+ + P+ +RHLGD F Q+L+V+ + F
Sbjct: 2197 GSTQRSALSMDPSNVEGQVALPLTADPQLA--TAASTTPIARRHLGDAFDQRLQVQCSNF 2254
Query: 159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC-----Q 211
VTT DS+++ ACG+ D SFR T Q G D + S + + +C
Sbjct: 2255 VTTTDSKYIFACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSLFSDCYVVTGS 2314
Query: 212 RDTSDVKVH--TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAAFTMNG 266
D + V H T G + + P SP S++ E I V+ E G + + +G
Sbjct: 2315 MDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDG 2374
Query: 267 NRLRHESHNDNLQEL 281
L H + +D L+ +
Sbjct: 2375 VILIHTTASDLLRRI 2389
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 267 NRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVR 326
+R + +SH+ ++ELIPELF+LPEM NS+ + LG+ D +++V LPPWA SPE FV
Sbjct: 1989 DRCQRDSHD--VKELIPELFYLPEMFRNSSKFNLGRRADGTLVDDVVLPPWAESPEHFVL 2046
Query: 327 INR 329
++R
Sbjct: 2047 MHR 2049
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPF +M++ L +GKFDHP+R+ SI +W CQRD+ DVK
Sbjct: 1960 EPFASMFINLHDGKFDHPDRITHSIKDSWDRCQRDSHDVK 1999
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2
SV=3
Length = 2507
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 128/255 (50%), Gaps = 17/255 (6%)
Query: 42 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA- 100
+P MF +D+CM +K+ SNSP+ ++ ANT+ L P+VV V N F++N+W+ Y+
Sbjct: 2113 APTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQPTVVGVAQNLVFSLNKWDNSYSY 2172
Query: 101 ASIQSPSYAETPGSPPG--NLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 158
+ Q + + P + G +LPLT D L S PV +RHLGD F Q+L V+ + F
Sbjct: 2173 GASQRSALSMDPSNAEGQVSLPLTADAQLASAASTT--PVARRHLGDAFDQRLTVQCSNF 2230
Query: 159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC-----Q 211
VTT DS+F+ ACG+ D SFR T Q G D + S + + +C
Sbjct: 2231 VTTTDSKFIFACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSLFSDCYVVTGS 2290
Query: 212 RDTSDVKVH--TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAAFTMNG 266
D + V H T G + + P SP S++ E I V+ E G + + +G
Sbjct: 2291 MDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDG 2350
Query: 267 NRLRHESHNDNLQEL 281
L H + +D L+ +
Sbjct: 2351 VILIHTTSSDLLRRI 2365
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 267 NRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVR 326
+R + +SH+ ++ELIPELF+LPEM NS+ + LG+ D +++V LPPWA SPE FV
Sbjct: 1965 DRCQRDSHD--VKELIPELFYLPEMFRNSSKFNLGRRADGTPVDDVVLPPWAESPEHFVL 2022
Query: 327 INR 329
++R
Sbjct: 2023 MHR 2025
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPF +M++ L +GKFDHP+R+ SI +W CQRD+ DVK
Sbjct: 1936 EPFASMFINLHDGKFDHPDRITHSIKDSWDRCQRDSHDVK 1975
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
++G G + +WR F L LY + +S+VRS+A+ ++
Sbjct: 2423 VTGAVNGRINIWRMFPLTKLYTYQPLNSAVRSVAVVASHRF 2463
>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum
GN=lvsC PE=4 SV=2
Length = 2491
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR 329
+++ELIPE +++PE L N N G ++ + I +V LPPWASSP F+RINR
Sbjct: 1984 DVKELIPEFYYMPEFLTNHNHINFGIKQNGIGIEDVLLPPWASSPSDFIRINR 2036
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFTT +L LQ G+FDHP+R+F SI+LAW N ++DVK
Sbjct: 1947 EPFTTQFLNLQGGRFDHPDRMFDSIALAWDNSLTSSTDVK 1986
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 26/129 (20%)
Query: 57 LKFPSNSPICHVTA---NTYVTLHMPSVVTVTANHQFAIN-RWNPDYAASIQSPSYAETP 112
LK + +PI +V N ++ + VTV + N +W P TP
Sbjct: 2141 LKITNKNPIVYVYIPEPNPIMSYLVADKVTVIDKSRTTTNHKWFP------------STP 2188
Query: 113 GSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGF 172
LDP + KR +G F+ + + NCF T D R++++C
Sbjct: 2189 NDKISPFTFELDP----------SSTTKRRIGLPFANDVTISPNCFAITSDGRYVISCAH 2238
Query: 173 WDNSFREPF 181
WDNSF+ F
Sbjct: 2239 WDNSFKLSF 2247
>sp|Q55AV3|LVSD_DICDI BEACH domain-containing protein lvsD OS=Dictyostelium discoideum
GN=lvsD PE=4 SV=2
Length = 2967
Score = 62.0 bits (149), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 64/166 (38%), Gaps = 70/166 (42%)
Query: 166 FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGD 225
FL+ C EPFT+ ++ LQ G FDH +R+F SI W+NC +SDVK T
Sbjct: 2315 FLMRC--------EPFTSHFIKLQSGHFDHADRMFDSIIDCWRNCLNSSSDVKELT---- 2362
Query: 226 LLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPEL 285
P F PE F +N NR+
Sbjct: 2363 -------PEFFYLPE---------------------FLINRNRV---------------- 2378
Query: 286 FFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINRM 330
E V NG L +NV LPPWA SP F+ +NRM
Sbjct: 2379 ----EFGVKQNGKAL---------DNVSLPPWAQQSPYHFIMLNRM 2411
>sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1
Length = 2801
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 270 RHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTE-DNVNINNVELPPWASSPEQFVRIN 328
R ES D ++ELIPE F+ PE L N NG+ LG + +NNV LPPWASS E F+R +
Sbjct: 2251 RMESPAD-VKELIPEFFYFPEFLENMNGFDLGCLQISQEKVNNVLLPPWASSREDFIRKH 2309
Query: 329 R 329
R
Sbjct: 2310 R 2310
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFT++++ LQ GKFD +R F SI+ AW+ +DVK
Sbjct: 2220 EPFTSLHIQLQSGKFDCADRQFHSIAAAWQARMESPADVK 2259
>sp|Q6VNB8|WDFY3_MOUSE WD repeat and FYVE domain-containing protein 3 OS=Mus musculus
GN=Wdfy3 PE=1 SV=1
Length = 3508
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASS-PEQFVRINR 329
+++ELIPE F+LPE L NSN + LG ++ + +V LPPWA P +F+R++R
Sbjct: 2824 DVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHR 2877
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQR-DTSDVK 218
EPFT ++L LQ G FD +R+F S+ AW + + + +DVK
Sbjct: 2786 EPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 2826
>sp|Q8IZQ1|WDFY3_HUMAN WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens
GN=WDFY3 PE=1 SV=2
Length = 3526
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASS-PEQFVRINR 329
+++ELIPE F+LPE L NSN + LG ++ + +V LPPWA P +F+R++R
Sbjct: 2842 DVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHR 2895
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQR-DTSDVK 218
EPFT ++L LQ G FD +R+F S+ AW + + + +DVK
Sbjct: 2804 EPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 2844
>sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2
Length = 2754
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 270 RHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTE-DNVNINNVELPPWASSPEQFVRIN 328
R ES D ++ELIPE F+ P+ L N NG+ LG + N + +V LPPWASSPE F++ +
Sbjct: 2205 RLESPAD-VKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQH 2263
Query: 329 R 329
R
Sbjct: 2264 R 2264
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFT++++ LQ G+FD +R F S++ AW+ +DVK
Sbjct: 2174 EPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVK 2213
>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2
Length = 2742
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 270 RHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTE-DNVNINNVELPPWASSPEQFVRIN 328
R ES D ++ELIPE F+ P+ L N NG+ LG + N + +V LPPWA SPE F++ +
Sbjct: 2193 RLESPAD-VKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKH 2251
Query: 329 R 329
R
Sbjct: 2252 R 2252
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFT++++ LQ G+FD +R F S++ AW+ +DVK
Sbjct: 2162 EPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVK 2201
>sp|P25356|BPH1_YEAST Beige protein homolog 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BPH1 PE=4 SV=2
Length = 2167
Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWAS-SPEQFVRINR 329
+++EL PE FFLPE L+N N Y G + +++V LPPWA+ P+ F++ NR
Sbjct: 1705 DVRELTPEFFFLPEFLINVNSYDFGTDQSGKKVDDVVLPPWANGDPKVFIQKNR 1758
>sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3
Length = 3801
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINR 329
+++ELIPE F+LPE LVN G+ G ++ +N+V LPPWA + P F+ I+R
Sbjct: 3289 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHR 3342
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 180 PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASP 239
PFT M+LA Q+ FD P+R F S + W+ S + T +L+ P F P
Sbjct: 3252 PFTKMFLAYQDQSFDIPDRTFHSTNTTWR-----LSSFESMTDVKELI-----PEFFYLP 3301
Query: 240 ESVVMSREGVIVVNYERGHIAAFTMNGNRLRH 271
E +V +REG ++ G NG R+ H
Sbjct: 3302 EFLV-NREG-----FDFG----VRQNGERVNH 3323
>sp|P97412|LYST_MOUSE Lysosomal-trafficking regulator OS=Mus musculus GN=Lyst PE=1 SV=1
Length = 3788
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINR 329
+++ELIPE F+LPE LVN G+ G ++ +N+V LPPWA + P F+ I+R
Sbjct: 3276 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHR 3329
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 180 PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASP 239
PFT M+LA Q+ FD P+R F S + W+ S + T +L+ P F P
Sbjct: 3239 PFTKMFLAYQDQSFDIPDRTFHSTNTTWR-----LSSFESMTDVKELI-----PEFFYLP 3288
Query: 240 ESVVMSREGVIVVNYERGHIAAFTMNGNRLRH 271
E +V +REG ++ G NG R+ H
Sbjct: 3289 EFLV-NREG-----FDFG----VRQNGERVNH 3310
>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1
Length = 3796
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINR 329
+++ELIPE F+LPE LVN G+ G ++ +N+V LPPWA + P F+ I+R
Sbjct: 3284 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHR 3337
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 180 PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASP 239
PFT M+LA Q+ FD P+R F S + W+ S + T +L+ P F P
Sbjct: 3247 PFTKMFLAYQDQSFDIPDRTFHSTNTTWR-----LSSFESMTDVKELI-----PEFFYLP 3296
Query: 240 ESVVMSREGVIVVNYERGHIAAFTMNGNRLRH 271
E +V +REG ++ G NG R+ H
Sbjct: 3297 EFLV-NREG-----FDFG----VRQNGERVNH 3318
>sp|Q6ZS81|WDFY4_HUMAN WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens
GN=WDFY4 PE=1 SV=3
Length = 3184
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINR 329
+++EL PE F+LPE L N NG G +D + +V+LPPWA P +F+ ++R
Sbjct: 2687 DVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADGDPRKFISLHR 2740
>sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB OS=Dictyostelium discoideum
GN=lvsB PE=4 SV=1
Length = 4118
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 275 NDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVR 326
N +++ELIPE F+L + LVNSN + +G ++ V +++V LPPWA + P F++
Sbjct: 3646 NSDVKELIPEFFYLSDFLVNSNKFFMGIKQNGVKVDDVILPPWAHNDPRLFIK 3698
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWK-NCQRDTSDVK 218
+PFT+ ++ Q G+FD P+R F SI+ +W + SDVK
Sbjct: 3610 QPFTSYFIDFQGGRFDVPDRAFHSIAQSWNLSSSISNSDVK 3650
>sp|Q7LKZ7|BPH1_SCHPO Beige protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=lvs1 PE=1 SV=2
Length = 2609
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLG-KTEDNVNINNVELPPWASS-PEQFVRINR 329
+++ELIPE F+L EM +N NG+ G + +++ IN+V LPPWA P FV+ NR
Sbjct: 2067 DVRELIPEFFYLSEMFINGNGFDFGSRQKESTPINDVILPPWAKGDPAIFVQKNR 2121
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 180 PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRD-TSDVK 218
PF YLALQ G+FDH +RLF SI AW++ ++ +DV+
Sbjct: 2030 PFVDSYLALQGGQFDHADRLFYSIEQAWRSSSKENMADVR 2069
>sp|Q54PP7|LVSF_DICDI BEACH domain-containing protein lvsF OS=Dictyostelium discoideum
GN=lvsF PE=4 SV=1
Length = 1154
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 57/140 (40%), Gaps = 39/140 (27%)
Query: 186 LALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMS 245
L LQ G+FD PNR+F SI W + T+DVK +L+ PS F S S
Sbjct: 512 LRLQNGRFDSPNRMFYSIEETWNSVLNSTTDVK------ELIPEFYKPS-FESSSSSRNG 564
Query: 246 REGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTED 305
G N+E G L NS LG +D
Sbjct: 565 GGGDDDDNFENGI--------------------------------FLTNSENLPLGIRQD 592
Query: 306 NVNINNVELPPWASSPEQFV 325
N IN++ LPPWASSP+ F+
Sbjct: 593 NNVINDIILPPWASSPKDFI 612
>sp|Q55DM1|LVSA_DICDI BEACH domain-containing protein lvsA OS=Dictyostelium discoideum
GN=lvsA PE=4 SV=2
Length = 3619
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 278 LQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWAS-SPEQFVRINR 329
+ ELIPE ++L E LVN+N + G + I+++ LPPWA SP++F++++R
Sbjct: 3137 VMELIPEFYYLDEFLVNNNKFNFGTKQGGEPIDDIILPPWAKGSPQEFIKLHR 3189
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDV 217
EPFT +L LQ G++D P+RLFSSI+ AW + + ++ V
Sbjct: 3098 EPFTQHFLKLQGGRWDQPDRLFSSITEAWASSSQGSTGV 3136
>sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3
Length = 2694
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVN-INNVELPPWASSPEQFVRINR 329
+++ELIPE F+ PE L N N + LG+ + + +N+V LP WA S E F+ +R
Sbjct: 2150 DVKELIPEFFYFPEFLENQNQFNLGRLQISKELVNDVILPKWAKSAEDFIYKHR 2203
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
EPFTT+++ LQ G+FD +R F SI W+ + DVK
Sbjct: 2113 EPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNPYDVK 2152
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 137 PVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF 193
P +R + +F+ L + FV + D++ L + G+WDNS + ++L +GK
Sbjct: 2383 PKTQRSINGSFAPGLEITSKLFVVSHDAKLLFSAGYWDNSIQ------VMSLTKGKI 2433
>sp|Q54RQ8|LVSE_DICDI BEACH domain-containing protein lvsE OS=Dictyostelium discoideum
GN=lvsE PE=4 SV=1
Length = 2192
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINR 329
+++ELIPE F++PE + N G+ G T N ++ LP WA SPE F++INR
Sbjct: 1664 DVKELIPEFFYMPEFINNGEGFNFGFT--NSKSGDLILPNWAHQSPELFIQINR 1715
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQ-RDTSDVK 218
EPFT+ +L+LQ G FDHP R+F S+ W + +DVK
Sbjct: 1626 EPFTSFHLSLQSGVFDHPQRMFESMDKMWDGVSGNNLADVK 1666
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 27/123 (21%)
Query: 57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPP 116
LK S+ P+ H+++ + VV V + A+N++ P SP
Sbjct: 1861 LKTKSSLPLVHISSCQDSDI----VVLVYRDGVMAVNQFVP----------------SPN 1900
Query: 117 GNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQKLRVRHNCFVTTVDSRFLLACGFWDN 175
GNLP T D T T ++ + F S + NCF T D +F+ +C WD+
Sbjct: 1901 GNLPFTFDIDKTLST------YKEKQIDTLFMSDSVTCISNCFAITPDGKFMFSCATWDS 1954
Query: 176 SFR 178
F+
Sbjct: 1955 VFK 1957
>sp|Q92636|FAN_HUMAN Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2
Length = 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLP-EMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR 329
+ +ELIPE + LVNS LGK + +++VELPPWASSPE F++ ++
Sbjct: 441 DFKELIPEFYGDDVSFLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSK 494
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 186 LALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
L LQ G+FD+ +R+F+SI+ WKNC +D K
Sbjct: 411 LCLQNGRFDNADRMFNSIAETWKNCLDGATDFK 443
>sp|O35242|FAN_MOUSE Protein FAN OS=Mus musculus GN=Nsmaf PE=2 SV=2
Length = 920
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 277 NLQELIPELFFLP-EMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR 329
+ +ELIPE + LVNS LGK + +++V+LP WASSP+ F++ N+
Sbjct: 441 DFKELIPEFYDEDVSFLVNSLKLDLGKRQGGQMVDDVDLPAWASSPQDFLQKNK 494
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 186 LALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
L LQ G+FD+ +R+F+SI+ WKNC +D K
Sbjct: 411 LCLQNGRFDNADRMFNSIAETWKNCLDGATDFK 443
>sp|Q46943|YQEJ_ECOLI Uncharacterized protein YqeJ OS=Escherichia coli (strain K12)
GN=yqeJ PE=4 SV=3
Length = 160
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 233 PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEML 292
G +S+ + E + NY+ H+ + +N + + +D L +LIP+ + PE
Sbjct: 74 QQGNRESKSIRRNIEYTWIENYDTAHLTSKKVNKFEIMDQVDDDRLAQLIPDFYVFPEKS 133
Query: 293 VNSNGYCLGK 302
V+ N GK
Sbjct: 134 VSYNILKQGK 143
>sp|Q8NXM6|PEPT_STAAW Peptidase T OS=Staphylococcus aureus (strain MW2) GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|A8Z018|PEPT_STAAT Peptidase T OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q6GB87|PEPT_STAAS Peptidase T OS=Staphylococcus aureus (strain MSSA476) GN=pepT PE=3
SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|A6QF52|PEPT_STAAE Peptidase T OS=Staphylococcus aureus (strain Newman) GN=pepT PE=3
SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q5HHS7|PEPT_STAAC Peptidase T OS=Staphylococcus aureus (strain COL) GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q2G064|PEPT_STAA8 Peptidase T OS=Staphylococcus aureus (strain NCTC 8325) GN=pepT
PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q2FIP8|PEPT_STAA3 Peptidase T OS=Staphylococcus aureus (strain USA300) GN=pepT PE=3
SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|P65806|PEPT_STAAN Peptidase T OS=Staphylococcus aureus (strain N315) GN=pepT PE=3
SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|P65805|PEPT_STAAM Peptidase T OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=pepT PE=1 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|A5IQU7|PEPT_STAA9 Peptidase T OS=Staphylococcus aureus (strain JH9) GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|A6TZM2|PEPT_STAA2 Peptidase T OS=Staphylococcus aureus (strain JH1) GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|A7WZN6|PEPT_STAA1 Peptidase T OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q2YSI6|PEPT_STAAB Peptidase T OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=pepT PE=3 SV=1
Length = 408
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q6GIP8|PEPT_STAAR Peptidase T OS=Staphylococcus aureus (strain MRSA252) GN=pepT PE=3
SV=1
Length = 408
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 88 HQFAINRWNPDYAASIQSPSYAETPGSP--PGNLPLTLDPILTHPTSNNNAPVPKRHLGD 145
H+F ++R+N D+A ++ Y E +T + HP S NA V LG+
Sbjct: 181 HKFDVDRFNADFAYTMDGSQYGELQYESFNAAEAVITCHGVNVHPGSAKNAMVNAIRLGE 240
Query: 146 NFSQKL 151
F L
Sbjct: 241 QFDSLL 246
>sp|Q2TAW0|CNDG2_XENLA Condensin-2 complex subunit G2 OS=Xenopus laevis GN=ncapg2 PE=1
SV=1
Length = 1156
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLD 124
+C +TA Y + P+++T + + D AA + S A+ S LP+ LD
Sbjct: 400 VCKITAK-YWEMIPPAILTDL------LRKILGDLAADVSS---ADVRCSVFKCLPILLD 449
Query: 125 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV-TTVDSRFLLACGFW 173
L+HP N P K L DN S+K+RV FV + + + A FW
Sbjct: 450 NKLSHPLLENMLPALKFCLHDN-SEKVRV---AFVDMLLKIKAVRAAKFW 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,911,234
Number of Sequences: 539616
Number of extensions: 5398508
Number of successful extensions: 11445
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 11315
Number of HSP's gapped (non-prelim): 118
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)