Query psy682
Match_columns 330
No_of_seqs 229 out of 676
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:13:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 6.7E-32 2.3E-36 267.1 19.3 269 1-281 196-555 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 2.3E-31 7.9E-36 263.2 17.8 248 1-263 278-577 (577)
3 1vyh_C Platelet-activating fac 100.0 3.7E-31 1.3E-35 256.1 15.9 234 1-264 124-409 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 1.5E-30 5.2E-35 241.0 15.6 237 1-266 29-302 (304)
5 3ow8_A WD repeat-containing pr 100.0 2.9E-30 9.8E-35 242.4 15.9 234 1-264 52-319 (321)
6 4gqb_B Methylosome protein 50; 100.0 9.2E-30 3.1E-34 242.8 15.1 217 1-269 97-334 (344)
7 3iz6_a 40S ribosomal protein R 100.0 1.8E-29 6.3E-34 241.1 14.8 240 1-267 82-376 (380)
8 1nr0_A Actin interacting prote 100.0 6.9E-29 2.4E-33 252.2 19.8 235 2-266 35-355 (611)
9 4ery_A WD repeat-containing pr 100.0 9.6E-29 3.3E-33 227.2 18.1 235 1-265 39-311 (312)
10 1nr0_A Actin interacting prote 100.0 4.7E-29 1.6E-33 253.4 16.8 254 1-266 164-567 (611)
11 1got_B GT-beta; complex (GTP-b 100.0 5.1E-29 1.7E-33 234.2 15.1 232 1-263 71-340 (340)
12 2pbi_B Guanine nucleotide-bind 100.0 1.7E-28 5.8E-33 233.0 16.2 234 1-263 80-354 (354)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-28 1.5E-32 228.7 17.6 239 1-267 32-336 (345)
14 4g56_B MGC81050 protein; prote 100.0 4.5E-28 1.5E-32 230.7 16.6 236 1-265 58-342 (357)
15 2hes_X YDR267CP; beta-propelle 100.0 1E-27 3.5E-32 224.8 15.9 239 1-266 28-328 (330)
16 2ynn_A Coatomer subunit beta'; 100.0 1.2E-27 4.1E-32 221.5 16.0 230 18-275 4-269 (304)
17 3frx_A Guanine nucleotide-bind 99.9 1.6E-27 5.4E-32 222.5 15.8 236 1-265 34-316 (319)
18 2xzm_R RACK1; ribosome, transl 99.9 1.5E-27 5.2E-32 224.0 15.7 235 1-265 43-339 (343)
19 4ggc_A P55CDC, cell division c 99.9 3.3E-27 1.1E-31 214.4 13.6 211 3-264 41-313 (318)
20 2pm7_B Protein transport prote 99.9 6.1E-27 2.1E-31 216.1 15.2 213 1-265 25-284 (297)
21 4e54_B DNA damage-binding prot 99.9 6.6E-27 2.3E-31 226.9 15.6 251 1-265 136-429 (435)
22 4h5i_A Guanine nucleotide-exch 99.9 6.4E-27 2.2E-31 223.6 14.2 221 2-265 99-342 (365)
23 1erj_A Transcriptional repress 99.9 1.4E-26 4.9E-31 222.0 16.1 234 2-265 81-388 (393)
24 1vyh_C Platelet-activating fac 99.9 1.3E-26 4.3E-31 224.3 15.8 237 9-275 91-379 (410)
25 3ow8_A WD repeat-containing pr 99.9 2.7E-26 9.1E-31 215.4 17.1 229 17-275 22-289 (321)
26 3ei3_B DNA damage-binding prot 99.9 7.7E-26 2.6E-30 213.2 19.6 239 1-266 90-382 (383)
27 2w18_A PALB2, fancn, partner a 99.9 1.9E-26 6.4E-31 223.7 15.7 246 6-264 62-355 (356)
28 3bg1_A Protein SEC13 homolog; 99.9 5.9E-27 2E-31 218.3 11.7 213 1-265 29-292 (316)
29 4gqb_B Methylosome protein 50; 99.9 1.4E-26 4.8E-31 220.7 14.5 241 8-281 15-305 (344)
30 4aow_A Guanine nucleotide-bind 99.9 4.8E-26 1.7E-30 208.6 17.5 232 1-264 55-335 (340)
31 3vl1_A 26S proteasome regulato 99.9 1E-25 3.5E-30 213.7 17.3 240 1-265 113-418 (420)
32 2j04_B YDR362CP, TAU91; beta p 99.9 1.1E-26 3.8E-31 235.2 10.9 225 1-271 177-433 (524)
33 4gga_A P55CDC, cell division c 99.9 2.5E-25 8.5E-30 214.5 19.7 251 3-266 121-395 (420)
34 3frx_A Guanine nucleotide-bind 99.9 1.5E-25 5E-30 209.2 17.2 221 18-269 8-270 (319)
35 1got_B GT-beta; complex (GTP-b 99.9 1.1E-25 3.8E-30 211.5 16.4 238 17-281 45-318 (340)
36 3dwl_C Actin-related protein 2 99.9 1.7E-26 5.9E-31 216.4 10.6 213 1-266 27-281 (377)
37 4g56_B MGC81050 protein; prote 99.9 6.4E-26 2.2E-30 215.8 14.6 245 4-281 23-317 (357)
38 3dm0_A Maltose-binding peripla 99.9 1.4E-25 4.9E-30 230.2 18.1 237 1-265 399-692 (694)
39 2pm9_A Protein WEB1, protein t 99.9 1.1E-24 3.7E-29 205.5 19.6 235 4-268 42-339 (416)
40 2j04_B YDR362CP, TAU91; beta p 99.9 1.3E-25 4.4E-30 227.4 13.4 240 1-268 229-519 (524)
41 4gq1_A NUP37; propeller, trans 99.9 2.1E-25 7.2E-30 214.5 14.0 228 1-266 105-389 (393)
42 3iz6_a 40S ribosomal protein R 99.9 8.1E-25 2.8E-29 208.9 18.0 238 7-272 46-336 (380)
43 1r5m_A SIR4-interacting protei 99.9 5.2E-25 1.8E-29 206.4 16.2 245 1-266 62-425 (425)
44 3odt_A Protein DOA1; ubiquitin 99.9 2.9E-25 1E-29 200.6 12.6 233 1-268 33-298 (313)
45 2j04_A TAU60, YPL007P, hypothe 99.9 1E-25 3.5E-30 230.8 10.7 235 1-272 31-310 (588)
46 3v7d_B Cell division control p 99.9 7.6E-25 2.6E-29 211.5 15.9 238 1-271 136-427 (464)
47 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.6E-24 5.5E-29 204.2 15.3 220 17-266 5-283 (345)
48 3sfz_A APAF-1, apoptotic pepti 99.9 1.1E-24 3.6E-29 235.4 15.7 260 1-273 856-1215(1249)
49 3i2n_A WD repeat-containing pr 99.9 5.2E-24 1.8E-28 195.9 16.8 238 2-265 36-352 (357)
50 1sq9_A Antiviral protein SKI8; 99.9 2.1E-24 7.3E-29 202.7 14.5 237 1-266 30-395 (397)
51 2hes_X YDR267CP; beta-propelle 99.9 1.8E-24 6E-29 202.8 13.8 220 16-266 3-280 (330)
52 3zwl_B Eukaryotic translation 99.9 5.9E-24 2E-28 195.5 16.6 238 1-268 48-348 (369)
53 2pm9_A Protein WEB1, protein t 99.9 1.4E-24 4.9E-29 204.6 12.0 241 1-265 83-413 (416)
54 3sfz_A APAF-1, apoptotic pepti 99.9 8E-24 2.7E-28 228.6 18.9 263 1-269 631-1037(1249)
55 2pbi_B Guanine nucleotide-bind 99.9 1.5E-23 5E-28 198.9 17.7 237 18-281 55-332 (354)
56 1k8k_C P40, ARP2/3 complex 41 99.9 5E-24 1.7E-28 197.6 12.7 214 1-266 24-274 (372)
57 3mkq_A Coatomer beta'-subunit; 99.9 1.3E-23 4.5E-28 216.0 16.3 245 1-275 29-322 (814)
58 1erj_A Transcriptional repress 99.9 2.2E-23 7.6E-28 199.8 16.6 243 8-281 41-358 (393)
59 3dw8_B Serine/threonine-protei 99.9 3E-23 1E-27 197.8 15.5 236 1-264 44-444 (447)
60 4aez_A CDC20, WD repeat-contai 99.9 1.1E-22 3.8E-27 194.5 18.8 237 1-266 107-380 (401)
61 2xzm_R RACK1; ribosome, transl 99.9 5.3E-23 1.8E-27 193.1 15.8 217 18-266 12-285 (343)
62 3f3f_A Nucleoporin SEH1; struc 99.9 4.6E-23 1.6E-27 186.4 14.4 212 1-265 27-336 (351)
63 2oaj_A Protein SNI1; WD40 repe 99.9 1.9E-23 6.4E-28 223.5 13.2 243 2-272 369-739 (902)
64 2oaj_A Protein SNI1; WD40 repe 99.9 1.1E-22 3.8E-27 217.5 19.0 155 115-276 437-675 (902)
65 2pm7_B Protein transport prote 99.9 6.2E-23 2.1E-27 189.2 14.0 195 20-266 2-238 (297)
66 4a11_B DNA excision repair pro 99.9 2.8E-22 9.5E-27 187.2 18.4 236 1-267 60-366 (408)
67 1gxr_A ESG1, transducin-like e 99.9 1E-22 3.6E-27 185.3 15.0 231 1-264 67-335 (337)
68 4aow_A Guanine nucleotide-bind 99.9 9.1E-23 3.1E-27 186.8 14.5 238 2-269 9-289 (340)
69 2xyi_A Probable histone-bindin 99.9 8E-23 2.7E-27 198.2 13.9 229 1-281 145-425 (430)
70 3k26_A Polycomb protein EED; W 99.9 6.9E-23 2.4E-27 188.6 12.5 234 2-265 39-365 (366)
71 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.1E-22 3.7E-27 196.5 14.0 236 1-266 133-442 (445)
72 3dm0_A Maltose-binding peripla 99.9 2.9E-22 9.9E-27 205.6 17.4 224 20-273 375-640 (694)
73 4ery_A WD repeat-containing pr 99.9 1.2E-21 4E-26 179.9 18.1 231 17-275 13-278 (312)
74 3gre_A Serine/threonine-protei 99.9 5E-23 1.7E-27 197.3 8.9 243 1-263 80-437 (437)
75 3jrp_A Fusion protein of prote 99.9 1.9E-22 6.6E-27 186.5 12.4 211 1-265 27-286 (379)
76 3vl1_A 26S proteasome regulato 99.9 7.7E-23 2.6E-27 193.8 9.8 235 1-266 72-365 (420)
77 1pgu_A Actin interacting prote 99.9 3.5E-22 1.2E-26 197.3 13.9 235 1-265 82-365 (615)
78 1p22_A F-BOX/WD-repeat protein 99.9 4.4E-22 1.5E-26 192.3 14.2 229 1-267 147-415 (435)
79 2aq5_A Coronin-1A; WD40 repeat 99.9 3.6E-22 1.2E-26 190.3 12.5 241 1-269 51-345 (402)
80 3bg1_A Protein SEC13 homolog; 99.9 1.7E-22 5.9E-27 188.1 9.9 193 22-266 8-247 (316)
81 2j04_A TAU60, YPL007P, hypothe 99.9 3.1E-22 1.1E-26 205.0 12.2 208 24-273 12-261 (588)
82 3mmy_A MRNA export factor; mRN 99.9 1.2E-21 4.2E-26 179.9 14.8 224 1-255 58-334 (368)
83 1gxr_A ESG1, transducin-like e 99.9 4E-21 1.4E-25 174.8 16.8 246 3-279 27-310 (337)
84 3vu4_A KMHSV2; beta-propeller 99.9 3.5E-21 1.2E-25 182.6 17.0 236 11-267 3-272 (355)
85 3zwl_B Eukaryotic translation 99.9 5.3E-21 1.8E-25 175.7 17.5 208 19-255 24-278 (369)
86 1yfq_A Cell cycle arrest prote 99.9 9.9E-22 3.4E-26 180.4 12.2 223 1-257 27-314 (342)
87 4h5i_A Guanine nucleotide-exch 99.9 3.8E-22 1.3E-26 190.5 9.4 171 1-222 151-341 (365)
88 1pgu_A Actin interacting prote 99.9 1.5E-21 5.3E-26 192.7 13.2 220 2-275 35-293 (615)
89 1l0q_A Surface layer protein; 99.9 1.8E-20 6.1E-25 176.2 19.0 246 1-275 6-285 (391)
90 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.5E-21 1.5E-25 186.3 14.9 252 3-281 21-360 (450)
91 3mkq_A Coatomer beta'-subunit; 99.9 3.3E-21 1.1E-25 198.1 14.1 230 18-275 4-269 (814)
92 3ei3_B DNA damage-binding prot 99.9 1.3E-21 4.5E-26 184.2 10.0 237 11-274 57-348 (383)
93 3lrv_A PRE-mRNA-splicing facto 99.8 2E-21 6.9E-26 181.9 10.0 208 1-265 52-291 (343)
94 4e54_B DNA damage-binding prot 99.8 1.3E-20 4.4E-25 182.6 15.1 177 83-273 135-335 (435)
95 1k8k_C P40, ARP2/3 complex 41 99.8 1.3E-20 4.3E-25 174.6 12.2 210 1-265 68-360 (372)
96 3jro_A Fusion protein of prote 99.8 5.7E-21 2E-25 199.4 10.4 211 1-265 25-284 (753)
97 1r5m_A SIR4-interacting protei 99.8 4.2E-20 1.5E-24 172.9 14.7 236 7-274 25-328 (425)
98 2w18_A PALB2, fancn, partner a 99.8 5.5E-21 1.9E-25 185.4 8.6 187 7-222 135-355 (356)
99 3gre_A Serine/threonine-protei 99.8 7E-21 2.4E-25 182.4 8.2 212 11-275 47-302 (437)
100 3odt_A Protein DOA1; ubiquitin 99.8 2E-19 6.8E-24 162.2 16.7 222 18-276 9-266 (313)
101 3bws_A Protein LP49; two-domai 99.8 1.2E-19 4.3E-24 172.7 16.1 240 1-266 138-432 (433)
102 3dwl_C Actin-related protein 2 99.8 2.1E-20 7.2E-25 174.9 10.1 168 1-221 71-279 (377)
103 3dw8_B Serine/threonine-protei 99.8 2.1E-20 7.1E-25 178.1 9.9 242 2-273 2-380 (447)
104 3k26_A Polycomb protein EED; W 99.8 6.5E-20 2.2E-24 168.6 12.4 218 23-266 14-318 (366)
105 4gga_A P55CDC, cell division c 99.8 1E-19 3.6E-24 175.1 14.1 219 1-246 163-416 (420)
106 4ggc_A P55CDC, cell division c 99.8 1.7E-19 5.7E-24 163.5 14.1 197 1-222 83-313 (318)
107 1sq9_A Antiviral protein SKI8; 99.8 9.1E-20 3.1E-24 171.0 12.0 227 19-273 8-330 (397)
108 3jrp_A Fusion protein of prote 99.8 7.7E-20 2.6E-24 169.0 11.3 198 17-266 1-240 (379)
109 3mmy_A MRNA export factor; mRN 99.8 2E-19 6.7E-24 165.2 13.8 246 8-281 20-321 (368)
110 3i2n_A WD repeat-containing pr 99.8 3.4E-19 1.2E-23 163.7 14.8 214 21-265 12-290 (357)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.8 4.7E-19 1.6E-23 172.1 13.8 211 1-265 119-390 (450)
112 3v7d_B Cell division control p 99.8 4E-19 1.4E-23 171.4 12.6 242 1-264 177-461 (464)
113 4a11_B DNA excision repair pro 99.8 1.3E-19 4.6E-24 169.0 8.9 208 5-266 21-276 (408)
114 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.7E-18 5.8E-23 168.4 16.7 250 5-281 87-403 (415)
115 1t77_A Lipopolysaccharide-resp 99.8 1.3E-20 4.6E-25 184.8 1.3 105 165-330 223-334 (414)
116 1yfq_A Cell cycle arrest prote 99.8 2.8E-18 9.6E-23 157.3 15.2 232 21-282 5-301 (342)
117 4aez_A CDC20, WD repeat-contai 99.8 1.9E-18 6.5E-23 165.0 14.0 208 1-233 150-390 (401)
118 3f3f_A Nucleoporin SEH1; struc 99.8 1.8E-18 6E-23 156.2 13.0 173 83-266 26-249 (351)
119 3vu4_A KMHSV2; beta-propeller 99.8 1.3E-17 4.6E-22 157.9 18.9 225 2-265 76-335 (355)
120 4gq1_A NUP37; propeller, trans 99.8 2.8E-19 9.5E-24 171.8 7.0 178 76-264 97-346 (393)
121 2aq5_A Coronin-1A; WD40 repeat 99.8 4.2E-18 1.4E-22 162.1 13.2 199 1-223 98-341 (402)
122 1nir_A Nitrite reductase; hemo 99.7 2.4E-17 8.3E-22 166.9 17.4 243 1-265 153-457 (543)
123 2hqs_A Protein TOLB; TOLB, PAL 99.7 2.5E-17 8.4E-22 160.2 16.1 215 7-247 159-408 (415)
124 3lrv_A PRE-mRNA-splicing facto 99.7 9.8E-18 3.3E-22 156.8 12.8 211 1-267 89-334 (343)
125 2xyi_A Probable histone-bindin 99.7 1.5E-17 5.2E-22 161.0 13.2 190 49-266 126-353 (430)
126 2ojh_A Uncharacterized protein 99.7 5.5E-17 1.9E-21 143.7 15.3 214 2-267 17-259 (297)
127 1p22_A F-BOX/WD-repeat protein 99.7 5.5E-17 1.9E-21 156.5 16.6 208 24-266 130-365 (435)
128 2ovr_B FBW7, F-BOX/WD repeat p 99.7 3.3E-17 1.1E-21 158.0 13.6 227 12-272 103-398 (445)
129 3jro_A Fusion protein of prote 99.7 1.4E-17 4.8E-22 173.8 11.3 195 20-266 2-238 (753)
130 1l0q_A Surface layer protein; 99.7 9.6E-17 3.3E-21 150.7 15.0 221 2-248 49-301 (391)
131 3u4y_A Uncharacterized protein 99.7 1E-16 3.4E-21 147.2 14.6 262 1-273 14-311 (331)
132 3bws_A Protein LP49; two-domai 99.7 3.2E-17 1.1E-21 156.1 11.2 243 2-278 94-403 (433)
133 2ecf_A Dipeptidyl peptidase IV 99.7 5.2E-16 1.8E-20 158.8 16.5 226 2-253 53-396 (741)
134 1ri6_A Putative isomerase YBHE 99.6 2.9E-15 9.9E-20 136.6 14.0 247 2-265 10-307 (343)
135 3o4h_A Acylamino-acid-releasin 99.6 4.2E-16 1.4E-20 156.1 9.1 241 2-266 38-315 (582)
136 1k32_A Tricorn protease; prote 99.6 1.7E-14 5.7E-19 155.3 18.5 250 7-272 33-467 (1045)
137 1xfd_A DIP, dipeptidyl aminope 99.6 9.4E-15 3.2E-19 148.8 14.1 205 3-254 33-323 (723)
138 2ecf_A Dipeptidyl peptidase IV 99.6 6.8E-15 2.3E-19 150.5 13.0 254 7-274 129-467 (741)
139 3scy_A Hypothetical bacterial 99.6 4.2E-13 1.5E-17 125.4 22.8 252 3-265 23-336 (361)
140 1nir_A Nitrite reductase; hemo 99.6 4.5E-14 1.6E-18 142.9 17.3 246 2-274 195-523 (543)
141 3hfq_A Uncharacterized protein 99.6 6.2E-14 2.1E-18 130.1 16.8 218 5-265 61-316 (347)
142 2z3z_A Dipeptidyl aminopeptida 99.6 2.3E-14 7.8E-19 146.1 13.5 225 3-254 41-373 (706)
143 2ojh_A Uncharacterized protein 99.5 8.9E-15 3E-19 129.4 7.1 201 5-255 60-290 (297)
144 3fvz_A Peptidyl-glycine alpha- 99.5 1.2E-12 4.3E-17 122.3 20.3 216 7-267 69-323 (329)
145 1z68_A Fibroblast activation p 99.5 1.7E-14 5.7E-19 147.6 7.3 211 4-268 33-348 (719)
146 3vgz_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 124.1 15.1 222 6-254 68-331 (353)
147 1pby_B Quinohemoprotein amine 99.5 2.2E-13 7.5E-18 123.8 12.6 227 1-275 5-279 (337)
148 1xfd_A DIP, dipeptidyl aminope 99.5 4.6E-13 1.6E-17 136.3 14.2 244 5-254 89-427 (723)
149 2z3z_A Dipeptidyl aminopeptida 99.5 7.1E-13 2.4E-17 135.0 15.4 252 5-269 99-438 (706)
150 1k32_A Tricorn protease; prote 99.4 2.6E-13 8.7E-18 146.0 12.2 222 2-255 219-490 (1045)
151 1jmx_B Amine dehydrogenase; ox 99.4 1.6E-12 5.6E-17 118.8 15.5 225 1-273 15-333 (349)
152 2oit_A Nucleoporin 214KDA; NH2 99.4 1.4E-13 4.6E-18 135.3 8.2 106 155-265 152-277 (434)
153 4a5s_A Dipeptidyl peptidase 4 99.4 9.5E-14 3.3E-18 144.0 7.4 225 6-273 35-360 (740)
154 3o4h_A Acylamino-acid-releasin 99.4 3.1E-13 1.1E-17 135.2 9.6 171 88-270 42-231 (582)
155 2oit_A Nucleoporin 214KDA; NH2 99.4 5.1E-13 1.7E-17 131.2 10.3 114 155-274 95-231 (434)
156 3pe7_A Oligogalacturonate lyas 99.4 7.7E-12 2.6E-16 117.0 16.0 253 6-263 57-379 (388)
157 1jof_A Carboxy-CIS,CIS-muconat 99.4 1.7E-11 5.9E-16 115.8 17.0 253 7-270 14-345 (365)
158 3hfq_A Uncharacterized protein 99.4 5.1E-12 1.7E-16 117.1 12.7 213 3-265 12-270 (347)
159 3azo_A Aminopeptidase; POP fam 99.3 1.4E-11 4.9E-16 124.4 16.3 251 4-272 44-375 (662)
160 3e5z_A Putative gluconolactona 99.3 3.6E-11 1.2E-15 109.5 16.1 218 2-271 45-291 (296)
161 1pby_B Quinohemoprotein amine 99.3 1.7E-10 5.8E-15 104.6 17.6 218 2-274 51-319 (337)
162 1ri6_A Putative isomerase YBHE 99.3 5.4E-11 1.8E-15 108.2 13.6 228 5-248 58-334 (343)
163 1q7f_A NHL, brain tumor CG1071 99.3 7E-11 2.4E-15 106.7 13.9 169 89-265 99-279 (286)
164 3u4y_A Uncharacterized protein 99.3 5E-11 1.7E-15 109.0 13.1 214 3-235 58-315 (331)
165 3no2_A Uncharacterized protein 99.2 5.1E-11 1.7E-15 110.2 12.4 225 1-278 9-265 (276)
166 2dg1_A DRP35, lactonase; beta 99.2 3.8E-10 1.3E-14 103.8 18.1 225 3-256 23-300 (333)
167 3vgz_A Uncharacterized protein 99.1 8.3E-10 2.8E-14 101.1 15.9 205 50-274 39-271 (353)
168 2gop_A Trilobed protease; beta 99.1 2.2E-09 7.4E-14 98.9 15.4 235 5-267 41-332 (347)
169 1q7f_A NHL, brain tumor CG1071 99.1 1.5E-09 5.2E-14 97.8 13.4 187 84-274 45-246 (286)
170 1z68_A Fibroblast activation p 99.0 7.6E-10 2.6E-14 113.0 12.1 210 5-265 88-390 (719)
171 1jof_A Carboxy-CIS,CIS-muconat 99.0 2.2E-09 7.6E-14 101.2 14.1 220 28-269 14-296 (365)
172 3scy_A Hypothetical bacterial 99.0 5.7E-09 2E-13 97.2 15.7 211 25-265 24-290 (361)
173 2bkl_A Prolyl endopeptidase; m 99.0 1.6E-09 5.6E-14 111.4 11.7 228 2-271 142-402 (695)
174 3azo_A Aminopeptidase; POP fam 99.0 3.5E-09 1.2E-13 106.9 13.3 175 87-270 44-278 (662)
175 3c5m_A Oligogalacturonate lyas 98.9 2.5E-08 8.7E-13 92.6 16.7 249 6-263 59-379 (396)
176 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 1.8E-08 6.3E-13 91.1 15.0 106 156-265 175-298 (314)
177 2oiz_A Aromatic amine dehydrog 98.9 1.7E-08 5.8E-13 96.1 14.8 85 158-249 259-360 (361)
178 3e5z_A Putative gluconolactona 98.9 1.2E-08 4.3E-13 92.6 12.5 208 17-276 17-256 (296)
179 2xdw_A Prolyl endopeptidase; a 98.9 1.6E-08 5.5E-13 104.1 13.8 224 7-266 151-414 (710)
180 3dsm_A Uncharacterized protein 98.8 1.2E-07 4E-12 88.8 17.2 229 3-289 60-320 (328)
181 1jmx_B Amine dehydrogenase; ox 98.8 4.4E-08 1.5E-12 89.2 13.1 194 76-278 7-297 (349)
182 3pe7_A Oligogalacturonate lyas 98.8 6.7E-08 2.3E-12 90.1 14.3 111 158-272 86-231 (388)
183 1rwi_B Serine/threonine-protei 98.8 9.4E-08 3.2E-12 84.7 13.9 169 89-266 86-264 (270)
184 3dr2_A Exported gluconolactona 98.7 7.8E-07 2.7E-11 81.7 18.2 100 156-262 191-302 (305)
185 2dg1_A DRP35, lactonase; beta 98.7 2.1E-07 7.3E-12 85.3 14.3 223 28-275 6-272 (333)
186 3g4e_A Regucalcin; six bladed 98.7 7.5E-08 2.6E-12 88.4 11.0 93 156-252 152-257 (297)
187 2bkl_A Prolyl endopeptidase; m 98.7 5.8E-07 2E-11 92.3 17.4 203 50-273 119-358 (695)
188 2xdw_A Prolyl endopeptidase; a 98.6 3E-07 1E-11 94.6 15.0 204 53-274 126-377 (710)
189 3c5m_A Oligogalacturonate lyas 98.6 3.1E-08 1.1E-12 92.0 6.1 246 13-272 16-335 (396)
190 3no2_A Uncharacterized protein 98.6 7.7E-07 2.6E-11 81.9 13.9 180 78-273 3-203 (276)
191 3fvz_A Peptidyl-glycine alpha- 98.5 8.4E-07 2.9E-11 82.5 13.6 173 2-187 107-323 (329)
192 4a5s_A Dipeptidyl peptidase 4 98.5 7.1E-08 2.4E-12 99.9 6.3 133 154-295 18-173 (740)
193 1yr2_A Prolyl oligopeptidase; 98.4 5.2E-07 1.8E-11 93.5 10.4 175 88-272 241-447 (741)
194 2z2n_A Virginiamycin B lyase; 98.4 3.1E-05 1.1E-09 68.7 20.7 244 5-267 34-296 (299)
195 1qks_A Cytochrome CD1 nitrite 98.4 1.4E-06 4.8E-11 88.9 12.5 106 157-265 346-476 (567)
196 2ghs_A AGR_C_1268P; regucalcin 98.4 8.9E-07 3E-11 82.6 10.1 155 92-251 111-286 (326)
197 2qe8_A Uncharacterized protein 98.4 5E-06 1.7E-10 77.9 13.8 147 88-254 143-308 (343)
198 1yr2_A Prolyl oligopeptidase; 98.3 4.9E-06 1.7E-10 86.2 14.6 202 52-273 163-402 (741)
199 3hrp_A Uncharacterized protein 98.3 1.2E-05 4.1E-10 78.1 14.2 144 114-264 219-408 (409)
200 2z2n_A Virginiamycin B lyase; 98.2 0.00019 6.4E-09 63.6 19.8 227 23-268 10-257 (299)
201 3iuj_A Prolyl endopeptidase; h 98.2 1.1E-05 3.7E-10 83.3 13.0 200 49-273 126-366 (693)
202 2gop_A Trilobed protease; beta 98.2 5.4E-06 1.8E-10 76.0 9.1 186 53-271 60-297 (347)
203 1rwi_B Serine/threonine-protei 98.1 6.3E-05 2.1E-09 66.3 15.1 176 85-271 41-227 (270)
204 2qc5_A Streptogramin B lactona 98.1 0.00063 2.1E-08 60.1 21.6 240 5-265 39-299 (300)
205 2oiz_A Aromatic amine dehydrog 98.1 1.3E-05 4.6E-10 76.0 10.5 38 155-195 307-346 (361)
206 3iuj_A Prolyl endopeptidase; h 98.1 1.3E-05 4.4E-10 82.6 11.1 230 2-272 150-411 (693)
207 3hrp_A Uncharacterized protein 98.1 4.4E-05 1.5E-09 74.1 13.8 191 53-269 132-358 (409)
208 3dsm_A Uncharacterized protein 98.0 1E-05 3.5E-10 75.4 8.5 172 84-267 58-254 (328)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 97.9 7.2E-05 2.5E-09 67.2 11.2 176 86-273 42-264 (314)
210 3hxj_A Pyrrolo-quinoline quino 97.9 0.00015 5.2E-09 65.6 12.4 244 3-273 36-291 (330)
211 2hz6_A Endoplasmic reticulum t 97.8 1.9E-05 6.5E-10 75.4 6.6 188 2-250 14-217 (369)
212 2qe8_A Uncharacterized protein 97.8 8.6E-05 3E-09 69.4 10.1 81 156-254 123-212 (343)
213 2qc5_A Streptogramin B lactona 97.8 0.0033 1.1E-07 55.4 19.6 227 24-269 16-263 (300)
214 2mad_H Methylamine dehydrogena 97.7 0.001 3.5E-08 63.7 17.0 54 215-271 298-356 (373)
215 1xip_A Nucleoporin NUP159; bet 97.7 9.3E-05 3.2E-09 72.3 8.5 76 168-254 140-231 (388)
216 3g4e_A Regucalcin; six bladed 97.6 0.00048 1.7E-08 62.7 12.5 176 84-275 29-239 (297)
217 1xip_A Nucleoporin NUP159; bet 97.6 0.00018 6.1E-09 70.3 8.6 137 114-269 38-194 (388)
218 1qks_A Cytochrome CD1 nitrite 97.5 0.00045 1.5E-08 70.4 11.5 186 78-273 165-381 (567)
219 3dr2_A Exported gluconolactona 97.5 0.00068 2.3E-08 61.8 11.4 181 84-275 61-276 (305)
220 2ghs_A AGR_C_1268P; regucalcin 97.4 0.0026 8.7E-08 58.9 14.1 180 84-275 65-269 (326)
221 3sjl_D Methylamine dehydrogena 97.4 0.0032 1.1E-07 61.4 14.7 110 156-267 140-257 (386)
222 1mda_H Methylamine dehydrogena 97.3 0.0018 6.3E-08 62.4 12.1 53 219-274 298-355 (368)
223 3sjl_D Methylamine dehydrogena 97.2 0.0034 1.1E-07 61.2 12.4 63 216-281 312-379 (386)
224 3hxj_A Pyrrolo-quinoline quino 97.1 0.0071 2.4E-07 54.4 13.5 230 9-263 80-321 (330)
225 1npe_A Nidogen, entactin; glyc 97.0 0.025 8.4E-07 50.2 15.4 92 155-249 169-263 (267)
226 1yiq_A Quinohemoprotein alcoho 96.7 0.018 6E-07 59.7 14.2 90 174-268 454-571 (689)
227 1mda_H Methylamine dehydrogena 96.7 0.015 5.2E-07 55.9 12.5 39 154-193 315-354 (368)
228 2mad_H Methylamine dehydrogena 96.4 0.11 3.9E-06 49.3 16.4 37 155-192 320-357 (373)
229 1npe_A Nidogen, entactin; glyc 96.3 0.069 2.4E-06 47.2 13.8 113 155-273 124-246 (267)
230 2fp8_A Strictosidine synthase; 96.3 0.037 1.3E-06 50.6 11.8 110 156-268 188-315 (322)
231 3c75_H MADH, methylamine dehyd 96.2 0.024 8E-07 55.8 10.3 42 155-197 372-416 (426)
232 2hz6_A Endoplasmic reticulum t 95.7 0.0038 1.3E-07 59.2 2.2 103 160-273 45-157 (369)
233 1kb0_A Quinohemoprotein alcoho 95.6 0.13 4.4E-06 53.0 13.5 88 175-267 457-568 (677)
234 3tc9_A Hypothetical hydrolase; 95.5 0.58 2E-05 45.3 17.4 28 156-184 273-300 (430)
235 2p4o_A Hypothetical protein; p 95.3 1.6 5.5E-05 39.3 19.0 88 161-252 175-273 (306)
236 3c75_H MADH, methylamine dehyd 95.2 0.046 1.6E-06 53.7 8.2 33 7-41 99-131 (426)
237 1fwx_A Nitrous oxide reductase 95.0 0.23 7.9E-06 50.9 12.9 80 156-266 280-361 (595)
238 3v65_B Low-density lipoprotein 95.0 1.1 3.6E-05 42.6 16.9 113 156-273 205-326 (386)
239 4hw6_A Hypothetical protein, I 94.9 2.4 8.2E-05 41.0 19.5 27 157-184 277-303 (433)
240 2ece_A 462AA long hypothetical 94.9 0.58 2E-05 46.6 15.1 18 238-255 382-399 (462)
241 3q7m_A Lipoprotein YFGL, BAMB; 94.8 0.28 9.5E-06 45.3 12.1 94 163-263 276-375 (376)
242 2ece_A 462AA long hypothetical 94.7 0.056 1.9E-06 53.9 7.2 37 5-41 226-266 (462)
243 2xe4_A Oligopeptidase B; hydro 94.5 0.57 2E-05 48.6 14.6 116 53-186 175-305 (751)
244 2p4o_A Hypothetical protein; p 94.4 0.97 3.3E-05 40.8 14.6 33 238-270 213-246 (306)
245 1fwx_A Nitrous oxide reductase 94.0 0.023 7.9E-07 58.3 2.7 69 115-185 278-361 (595)
246 3v64_C Agrin; beta propeller, 93.7 3.3 0.00011 38.5 17.1 112 155-272 161-282 (349)
247 2fp8_A Strictosidine synthase; 93.5 0.35 1.2E-05 43.9 9.6 37 239-275 231-278 (322)
248 2xe4_A Oligopeptidase B; hydro 92.8 0.28 9.5E-06 50.9 8.8 96 164-266 330-458 (751)
249 1kv9_A Type II quinohemoprotei 92.5 2.1 7.2E-05 43.8 14.8 89 173-266 436-552 (668)
250 1ijq_A LDL receptor, low-densi 92.2 6.6 0.00023 35.7 17.9 112 156-271 80-200 (316)
251 1n7d_A LDL receptor, low-densi 92.0 1.2 4.3E-05 45.9 12.4 87 155-247 542-636 (699)
252 3sov_A LRP-6, low-density lipo 90.1 6.7 0.00023 36.1 14.4 112 156-271 82-202 (318)
253 3v65_B Low-density lipoprotein 89.8 2.6 8.8E-05 39.9 11.4 89 155-249 248-343 (386)
254 2iwa_A Glutamine cyclotransfer 89.6 0.85 2.9E-05 41.9 7.6 94 158-255 110-224 (266)
255 2iwa_A Glutamine cyclotransfer 89.6 0.67 2.3E-05 42.6 6.9 113 156-274 24-144 (266)
256 1n7d_A LDL receptor, low-densi 89.5 4.1 0.00014 42.0 13.5 115 156-273 499-622 (699)
257 1kb0_A Quinohemoprotein alcoho 89.2 1.2 4E-05 45.8 9.0 32 160-193 484-515 (677)
258 3kya_A Putative phosphatase; s 89.0 1.7 5.9E-05 43.4 9.9 150 90-267 162-342 (496)
259 3p5b_L Low density lipoprotein 88.9 16 0.00054 34.6 17.1 224 7-245 92-340 (400)
260 3v64_C Agrin; beta propeller, 87.9 6.4 0.00022 36.5 12.6 90 155-249 205-300 (349)
261 3nol_A Glutamine cyclotransfer 87.0 4.5 0.00015 37.1 10.7 20 238-257 226-245 (262)
262 1yiq_A Quinohemoprotein alcoho 86.9 2.5 8.5E-05 43.4 9.9 34 160-195 482-515 (689)
263 3m0c_C LDL receptor, low-densi 86.8 12 0.0004 39.4 15.1 113 156-272 474-595 (791)
264 3nol_A Glutamine cyclotransfer 86.3 1.5 5.1E-05 40.3 7.0 109 157-274 47-164 (262)
265 3q7m_A Lipoprotein YFGL, BAMB; 86.1 20 0.00067 32.5 15.6 15 173-188 196-210 (376)
266 3nok_A Glutaminyl cyclase; bet 85.8 0.76 2.6E-05 42.5 4.7 111 157-276 59-175 (268)
267 3kya_A Putative phosphatase; s 81.7 44 0.0015 33.2 17.0 35 238-272 445-481 (496)
268 3tc9_A Hypothetical hydrolase; 81.2 9 0.00031 36.8 10.5 111 156-267 182-302 (430)
269 3sov_A LRP-6, low-density lipo 79.9 36 0.0012 31.0 15.3 29 155-184 168-196 (318)
270 3mbr_X Glutamine cyclotransfer 79.2 34 0.0012 30.7 13.0 20 238-257 205-224 (243)
271 4a2l_A BT_4663, two-component 78.4 62 0.0021 32.9 17.6 107 156-271 360-485 (795)
272 3v9f_A Two-component system se 76.9 68 0.0023 32.6 16.9 111 156-272 498-617 (781)
273 3s94_A LRP-6, low-density lipo 74.2 77 0.0026 31.9 16.7 114 155-272 86-208 (619)
274 3nok_A Glutaminyl cyclase; bet 73.7 43 0.0015 30.6 12.2 35 2-36 70-104 (268)
275 4a2l_A BT_4663, two-component 72.2 89 0.003 31.8 19.1 102 156-269 455-574 (795)
276 1ijq_A LDL receptor, low-densi 69.6 32 0.0011 31.0 10.5 114 156-272 33-158 (316)
277 4a0p_A LRP6, LRP-6, low-densit 69.2 84 0.0029 31.7 14.5 108 156-268 83-199 (628)
278 3sre_A PON1, serum paraoxonase 68.5 67 0.0023 30.2 12.8 28 238-265 222-251 (355)
279 3qqz_A Putative uncharacterize 68.2 67 0.0023 28.8 18.3 107 156-266 124-253 (255)
280 3mbr_X Glutamine cyclotransfer 67.3 16 0.00053 33.0 7.6 110 157-275 25-143 (243)
281 3p5b_L Low density lipoprotein 66.6 49 0.0017 31.1 11.5 36 157-193 293-328 (400)
282 3m0c_C LDL receptor, low-densi 66.1 84 0.0029 32.9 14.1 177 6-192 445-639 (791)
283 3ei3_A DNA damage-binding prot 65.4 1.6E+02 0.0055 32.2 16.6 241 5-271 401-687 (1158)
284 3v9f_A Two-component system se 63.9 1.3E+02 0.0044 30.5 16.3 110 156-272 410-530 (781)
285 1flg_A Protein (quinoprotein e 60.3 77 0.0026 31.6 12.1 26 2-27 341-366 (582)
286 2ad6_A Methanol dehydrogenase 59.3 27 0.00094 34.7 8.5 23 3-25 322-344 (571)
287 1kv9_A Type II quinohemoprotei 59.2 32 0.0011 34.9 9.1 26 2-27 319-344 (668)
288 2ad6_A Methanol dehydrogenase 58.7 14 0.00046 37.0 6.1 75 174-254 443-524 (571)
289 1k3i_A Galactose oxidase precu 57.5 32 0.0011 34.5 8.7 29 157-186 291-324 (656)
290 1w6s_A Methanol dehydrogenase 52.6 21 0.00072 36.1 6.4 22 3-24 329-350 (599)
291 3das_A Putative oxidoreductase 52.1 64 0.0022 30.3 9.3 16 156-171 143-158 (347)
292 1flg_A Protein (quinoprotein e 51.5 21 0.00071 35.8 6.1 75 174-253 465-545 (582)
293 4hw6_A Hypothetical protein, I 38.7 2.6E+02 0.0088 26.4 15.7 55 6-62 249-305 (433)
294 2p9w_A MAL S 1 allergenic prot 37.4 2.6E+02 0.009 26.1 11.3 9 118-126 189-197 (334)
295 3s94_A LRP-6, low-density lipo 36.3 1.3E+02 0.0046 30.1 9.4 115 156-272 43-165 (619)
296 2xbg_A YCF48-like protein; pho 34.9 2.5E+02 0.0084 25.1 19.8 101 156-264 208-320 (327)
297 4a0p_A LRP6, LRP-6, low-densit 33.6 1.6E+02 0.0054 29.7 9.4 111 156-271 40-160 (628)
298 2ism_A Putative oxidoreductase 32.1 1.8E+02 0.0061 26.5 8.9 76 158-266 80-178 (352)
299 3zwu_A Alkaline phosphatase PH 30.3 40 0.0014 34.3 4.3 31 223-254 518-548 (592)
300 3s25_A Hypothetical 7-bladed b 28.4 1.6E+02 0.0054 26.6 7.7 106 157-271 57-181 (302)
301 4gq2_M Nucleoporin NUP120; bet 28.0 46 0.0016 35.6 4.4 34 156-191 239-272 (950)
302 2xzh_A Clathrin heavy chain 1; 26.3 1.7E+02 0.0059 27.9 7.6 108 156-275 70-198 (365)
303 4fhn_B Nucleoporin NUP120; pro 24.5 40 0.0014 36.6 3.2 34 156-191 241-274 (1139)
304 3sre_A PON1, serum paraoxonase 21.2 78 0.0027 29.8 4.1 29 155-184 223-251 (355)
305 3f7f_A Nucleoporin NUP120; nuc 20.3 67 0.0023 33.6 3.7 29 161-191 228-256 (729)
306 1k3i_A Galactose oxidase precu 20.0 1.7E+02 0.0057 29.1 6.6 29 157-186 247-275 (656)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.98 E-value=6.7e-32 Score=267.08 Aligned_cols=269 Identities=17% Similarity=0.216 Sum_probs=216.2
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeCCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFPSNS 63 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs~~~ 63 (330)
|+|+.||+|++|+. +++.+.++.+|...|.+++|+|||+. ..+....+|+..+..++|+||+
T Consensus 196 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~ 274 (577)
T 2ymu_A 196 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274 (577)
T ss_dssp EEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTS
T ss_pred EEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 47889999999997 67899999999999999999999987 2223456888999999999999
Q ss_pred CeeEeeeccc------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc
Q psy682 64 PICHVTANTY------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL 119 (330)
Q Consensus 64 ~v~~~~~~~~------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l 119 (330)
+.++.+.... ..+.+++..+++++.+++|++|+.++..+....+|.. .+.++
T Consensus 275 ~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~----~v~~~ 350 (577)
T 2ymu_A 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS----SVWGV 350 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS----CEEEE
T ss_pred CEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCC----CEEEE
Confidence 9888765432 2456677778899999999999998888888888874 66789
Q ss_pred cccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682 120 PLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH 195 (330)
Q Consensus 120 ~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH 195 (330)
.|+||+. +++++.++. +..+...+...+++..+. .+++|+|||++ +++|+.|++|++ |+. ++++++.+.+|
T Consensus 351 ~~s~~g~~l~~~~~dg~--v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~-~~~-~~~~~~~~~~~ 425 (577)
T 2ymu_A 351 AFSPDGQTIASASDDKT--VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL-WNR-NGQLLQTLTGH 425 (577)
T ss_dssp EECTTSSEEEEEETTSE--EEEEETTCCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEE-ECT-TCCEEEEEECC
T ss_pred EECCCCCEEEEEeCCCE--EEEEcCCCCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEE-EeC-CCCEEEEecCC
Confidence 9999999 554333332 334443333334444443 57899999999 555668999999 997 58999999999
Q ss_pred CCcE-----------EEe-----HHHHHhh----------------------------hccCCCcEEEEcccCceeeecC
Q psy682 196 PNRL-----------FSS-----ISLAWKN----------------------------CQRDTSDVKVHTTFGDLLRSLD 231 (330)
Q Consensus 196 ~d~V-----------iaS-----t~~lW~~----------------------------SgS~Dgtvkl~~~~G~ll~tL~ 231 (330)
...| +++ ++++|+. +|+.||+|+||+.+|+++++|.
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~ 505 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe
Confidence 9987 222 7888876 8899999999999999999999
Q ss_pred CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeeccCc-cccccc
Q psy682 232 PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHESHN-DNLQEL 281 (330)
Q Consensus 232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~~~-~dVkEL 281 (330)
+|.+ .|.+|+|||||+.||+++ ++.+++|..+|+.++.+..| +.|..|
T Consensus 506 ~h~~--~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 506 GHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 555 (577)
T ss_dssp CCSS--CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEE
T ss_pred CCCC--CEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEE
Confidence 9999 999999999999999985 78999999999999998755 445544
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=2.3e-31 Score=263.21 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=198.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeCCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFPSNS 63 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs~~~ 63 (330)
++++.|++|++|+. +++.+.++.+|...|++++|+|||+. ..+....+|...+..++|+|++
T Consensus 278 ~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 278 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp EEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS
T ss_pred EEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC
Confidence 46789999999997 57888999999999999999999887 1123345788889999999999
Q ss_pred CeeEeeeccc------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc
Q psy682 64 PICHVTANTY------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL 119 (330)
Q Consensus 64 ~v~~~~~~~~------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l 119 (330)
..++.+.... +.+.+++..+|+++.|++|++|+.++..+....+|.. .+.++
T Consensus 357 ~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~----~v~~~ 432 (577)
T 2ymu_A 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS----SVWGV 432 (577)
T ss_dssp SEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSS----CEEEE
T ss_pred CEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCC----CeEEE
Confidence 9888775332 3566777778999999999999998887777889974 56789
Q ss_pred cccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682 120 PLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH 195 (330)
Q Consensus 120 ~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH 195 (330)
.|+||++ +++++.++. +..|.+.+...+++..+. .+++|+|||++ +++++.|++||+ |+. +|++++.+.+|
T Consensus 433 ~~s~d~~~l~~~~~d~~--v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~-las~~~d~~i~i-w~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKT--VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL-WNR-NGQLLQTLTGH 507 (577)
T ss_dssp EECTTSSEEEEEETTSE--EEEEETTSCEEEEEECCSSCEEEEEECTTSCE-EEEEETTSEEEE-EET-TSCEEEEEECC
T ss_pred EECCCCCEEEEEcCCCE--EEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEE-EcC-CCCEEEEEeCC
Confidence 9999999 555344333 334444443334444443 58899999999 555668999999 997 69999999999
Q ss_pred CCcE--E--Ee--HHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682 196 PNRL--F--SS--ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT 263 (330)
Q Consensus 196 ~d~V--i--aS--t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s 263 (330)
.+.| + .+ ...+ +|+.||+|+||+.+|+++++|.+|.+ .|.+|+|||||+.|++++ |+++++|+
T Consensus 508 ~~~v~~l~~s~dg~~l~---s~~~dg~v~lwd~~~~~~~~~~~h~~--~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIA---SASDDKTVKLWNRNGQLLQTLTGHSS--SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEE---EEETTSEEEEECTTSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEE---EEECcCEEEEEeCCCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9988 2 22 3344 89999999999999999999999999 999999999999999985 78898884
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=3.7e-31 Score=256.12 Aligned_cols=234 Identities=14% Similarity=0.131 Sum_probs=187.0
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|||+.||+|++|++.+|+...+|++|.+.|++|+|+|+|++ ..+....+|...|..+.|+|+
T Consensus 124 ~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~ 203 (410)
T 1vyh_C 124 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203 (410)
T ss_dssp EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred EEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC
Confidence 58999999999999999999999999999999999999987 122334588889999999999
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK 140 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~ 140 (330)
+..+ +|++.|++|++|+...+. +.++.+|.+ .+..+.+++|+. +++++.++... .
T Consensus 204 ~~~l-----------------~s~s~D~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~g~~l~s~s~D~~v~--v 260 (410)
T 1vyh_C 204 GDHI-----------------VSASRDKTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQDGTLIASCSNDQTVR--V 260 (410)
T ss_dssp SSEE-----------------EEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEE--E
T ss_pred CCEE-----------------EEEeCCCeEEEEECCCCcEEEEEeCCCc----cEEEEEECCCCCEEEEEcCCCeEE--E
Confidence 9875 888899999999987555 455668874 677899999999 56544444433 4
Q ss_pred eccCC-CCccceeee---eeEEEEecC--------------------CCeEEEeeccCCeEEEeeecccccccccccCCC
Q psy682 141 RHLGD-NFSQKLRVR---HNCFVTTVD--------------------SRFLLACGFWDNSFREPFTTMYLALQEGKFDHP 196 (330)
Q Consensus 141 ~~l~~-~~~~~~~~~---~~~~~~spD--------------------g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~ 196 (330)
|.+.. .....+..| ..+++|+|+ |++ +++|+.|++||+ |++.+|+++.++.+|.
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~sgs~D~~i~i-wd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF-LLSGSRDKTIKM-WDVSTGMCLMTLVGHD 338 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE-EEEEETTSEEEE-EETTTTEEEEEEECCS
T ss_pred EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE-EEEEeCCCeEEE-EECCCCceEEEEECCC
Confidence 43321 111223333 258889997 556 666779999999 9999999999999999
Q ss_pred CcEE----Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682 197 NRLF----SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 197 d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~ 264 (330)
+.|. .+ ...+ |||.||+|++|+. +|+++++|.+|.+ .|.+|+|+|+|..||+++ |+++++|..
T Consensus 339 ~~v~~v~~~~~g~~l~---s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFIL---SCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEE---EEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEE---EEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9882 22 3334 8999999999976 7899999999999 999999999999999995 889999964
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.5e-30 Score=240.99 Aligned_cols=237 Identities=10% Similarity=0.076 Sum_probs=183.8
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|||+.||+|+||++.+++.+.++.+|...|++++|+||+++ ..+..+.+|.+.|..++|+|+
T Consensus 29 ~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 108 (304)
T 2ynn_A 29 LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred EEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCC
Confidence 57899999999999999999999999999999999999987 223446689999999999999
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-C-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCc
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-A-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPV 138 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~ 138 (330)
++.+ +|++.|++|++|+.... . ...+.+|. ..+.++.|+| |+. +++++.++...+
T Consensus 109 ~~~l-----------------~sgs~D~~v~lWd~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 109 KPYV-----------------LSGSDDLTVKLWNWENNWALEQTFEGHE----HFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp SSEE-----------------EEEETTSCEEEEEGGGTTEEEEEECCCC----SCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred CCEE-----------------EEECCCCeEEEEECCCCcchhhhhcccC----CcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 9975 88899999999998654 2 34456887 4677899999 666 666455554444
Q ss_pred ceeccCCCCccceee-e---eeEEEEec--CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHH
Q psy682 139 PKRHLGDNFSQKLRV-R---HNCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLA 206 (330)
Q Consensus 139 ~~~~l~~~~~~~~~~-~---~~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~l 206 (330)
|....+.+. ..+.. + ..++.++| |+++ +++|+.|++||+ |++.+++++.++.+|.+.|. .+ ...+
T Consensus 168 wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~D~~i~i-Wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 168 WSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKI-WDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EETTCSSCS-EEEECCCTTCEEEEEECCSTTCCE-EEEEETTSEEEE-EETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EECCCCCcc-ceeccCCcCcEEEEEEEEcCCCCE-EEEEcCCCeEEE-EeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 332212211 11111 1 23555655 7888 556678999999 99999999999999999882 12 3334
Q ss_pred HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCcc--EEEEccCCeEEEEeeCC
Q psy682 207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMNG 266 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~--~l~s~~~~~~~~~s~nG 266 (330)
|||.||+|+||+. +++++++|..|.+ .|.+++|+|+|. ++|+|+++.++.|+...
T Consensus 245 ---s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 245 ---SGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ---EEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred ---EEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9999999999976 7999999999988 899999999885 68999888888887653
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=242.42 Aligned_cols=234 Identities=13% Similarity=0.124 Sum_probs=178.7
Q ss_pred CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeC
Q psy682 1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFP 60 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs 60 (330)
||||.|++||||++.+++ ...++.||...|.+++|+|++.+ ..+.....+...++.++|+
T Consensus 52 ~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s 131 (321)
T 3ow8_A 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131 (321)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC
T ss_pred EEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC
Confidence 589999999999997664 35578999999999999999876 1112233455556667777
Q ss_pred CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc
Q psy682 61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV 138 (330)
Q Consensus 61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~ 138 (330)
|+++. +++++.+++|++|+...... ....+|. ..+.++.|+||++ +++++.++..
T Consensus 132 pdg~~-----------------l~~g~~dg~v~i~~~~~~~~~~~~~~~~----~~v~~~~~spdg~~lasg~~dg~i-- 188 (321)
T 3ow8_A 132 PDSQY-----------------LATGTHVGKVNIFGVESGKKEYSLDTRG----KFILSIAYSPDGKYLASGAIDGII-- 188 (321)
T ss_dssp TTSSE-----------------EEEECTTSEEEEEETTTCSEEEEEECSS----SCEEEEEECTTSSEEEEEETTSCE--
T ss_pred CCCCE-----------------EEEEcCCCcEEEEEcCCCceeEEecCCC----ceEEEEEECCCCCEEEEEcCCCeE--
Confidence 77776 48889999999999876543 3334554 3567899999999 5554444433
Q ss_pred ceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHh
Q psy682 139 PKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWK 208 (330)
Q Consensus 139 ~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~ 208 (330)
..|.+.. ....+++.+. .+++|+||+++ +++|+.|++||+ |++.++++...+.+|.+.|. .. ...+
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-- 264 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKI-YDVQHANLAGTLSGHASWVLNVAFCPDDTHFV-- 264 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSEEE--
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEE-EECCCcceeEEEcCCCCceEEEEECCCCCEEE--
Confidence 3343321 1223344443 58899999998 566678999999 99999999999999999882 11 3334
Q ss_pred hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682 209 NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~ 264 (330)
|||.||+|+||+. +|+.++++.+|.+ .|.+|+|+|||+.||+++ ++.+++|..
T Consensus 265 -s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 265 -SSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -EEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred -EEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999976 7999999999999 999999999999999985 788999973
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=9.2e-30 Score=242.76 Aligned_cols=217 Identities=11% Similarity=0.051 Sum_probs=162.9
Q ss_pred CcccCCCcEEEeeccccccccee----ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAF----PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl----~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
++|+.||+|||||+.+|+.+.++ .+|.+.|++|+|||||++
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~----------------------------------- 141 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ----------------------------------- 141 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-----------------------------------
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-----------------------------------
Confidence 47899999999999998866554 589999999999999887
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCcccee-
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQKLR- 152 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~~~~- 152 (330)
++|++.|++|++|+...+. +.++.+|.+ .+.++.|++|+. +++++.++...+|..+.+... ..+.
T Consensus 142 ------l~sgs~d~~i~iwd~~~~~~~~~~~~h~~----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~ 210 (344)
T 4gqb_B 142 ------AVSGSKDICIKVWDLAQQVVLSSYRAHAA----QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-SQIGC 210 (344)
T ss_dssp ------EEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-EECC-
T ss_pred ------EEEEeCCCeEEEEECCCCcEEEEEcCcCC----ceEEEEecCCCCCceeeecccccccccccccccee-eeeec
Confidence 4888999999999987555 556679974 677899999986 455444444333322222221 1121
Q ss_pred -ee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--Ee---HHHHHhhhccCCCcEEEEc
Q psy682 153 -VR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--SS---ISLAWKNCQRDTSDVKVHT 221 (330)
Q Consensus 153 -~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--aS---t~~lW~~SgS~Dgtvkl~~ 221 (330)
.+ ..+++++|++..++++|+.|++||+ |++.++++++++.+|.+.| + .. .+.+ |||.||+|+||+
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~-wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~la---sgs~D~~i~vwd 286 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSL-VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLA---SLSEDCSLAVLD 286 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEE-EESCC--CCEEEECCSSCEEEEEECSSSSCCEE---EEETTSCEEEEC
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEE-EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEE---EEeCCCeEEEEE
Confidence 11 2578899977666888889999999 9999999999999999998 2 22 3444 999999999998
Q ss_pred ccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeCCcee
Q psy682 222 TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMNGNRL 269 (330)
Q Consensus 222 ~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~nG~~l 269 (330)
.+...+..+.+|.+ .|++|+|||||+ +|++++ |++++.|.++-+.+
T Consensus 287 ~~~~~~~~~~~H~~--~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 287 SSLSELFRSQAHRD--FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTCCEEEEECCCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCcEEEEcCCCC--CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 75444556899999 999999999986 677875 89999999876544
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=1.8e-29 Score=241.14 Aligned_cols=240 Identities=14% Similarity=0.133 Sum_probs=177.5
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C------------------cceeeeecCccEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S------------------PMMFSTVLDDVCM 55 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~------------------~l~~~~~~~d~~~ 55 (330)
|||+.||+||+|++.+++.+.++++|..+|.+++|+|||+. . ....+.+|...+.
T Consensus 82 ~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 82 VSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS 161 (380)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred EEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence 58999999999999999999999999999999999999987 0 0112335555555
Q ss_pred EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCccc-C-----CCCCCCCCCCCCCccccC-CCc-e
Q psy682 56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-S-----PSYAETPGSPPGNLPLTL-DPI-L 127 (330)
Q Consensus 56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~-----~~h~~~~~~~~~~l~fs~-D~~-l 127 (330)
.+.|+|+++. .++|++.|++|++|+...+.... . .+|. ..+.++.+.+ |+. +
T Consensus 162 ~~~~~~~~~~----------------~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l 221 (380)
T 3iz6_a 162 SCQYVPDQET----------------RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT----ADVLSLSINSLNANMF 221 (380)
T ss_dssp CCBCCSSSSS----------------CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC----SCEEEEEECSSSCCEE
T ss_pred EEEEecCCCC----------------EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc----cCeEEEEeecCCCCEE
Confidence 5666665432 35889999999999997655322 1 4676 3566788865 776 5
Q ss_pred eccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc------
Q psy682 128 THPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR------ 198 (330)
Q Consensus 128 ~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~------ 198 (330)
++++.++...+|..+......+.+.+|. .+++|+|||++ +++|+.|++||+ |++.+|+.++.+..|.+.
T Consensus 222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~l-wd~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
T 3iz6_a 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRL-FDMRTGHQLQVYNREPDRNDNELP 299 (380)
T ss_dssp EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEE-EETTTTEEEEEECCCCSSSCCSSC
T ss_pred EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEE-EECCCCcEEEEecccccccccccC
Confidence 6544444443333222223334455554 68999999998 566778999999 999999888777666442
Q ss_pred -E----EEe--HHHHHhhhccCCCcEEEEcc-cCceeeec----CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 199 -L----FSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSL----DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 199 -V----iaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL----~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
| +.. ...+ +|+.||+|+||+. .|+.+.++ .+|.+ .|++++|||||+.||+|+ |+++++|...
T Consensus 300 ~v~~~~~s~~g~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 300 IVTSVAFSISGRLLF---AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG--RISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCSEEEECSSSSEEE---EECTTSCEEEEETTTCCEEEEECCSCSSCCC--CCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ceEEEEECCCCCEEE---EEECCCCEEEEECCCCceEEEEecccCCCCC--ceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 2 111 3333 8999999999975 78888887 68888 999999999999999996 8899999987
Q ss_pred Cc
Q psy682 266 GN 267 (330)
Q Consensus 266 G~ 267 (330)
|.
T Consensus 375 ~~ 376 (380)
T 3iz6_a 375 GH 376 (380)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=6.9e-29 Score=252.21 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=172.8
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------C-----c--ceeeeecCccEEEEEeCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------S-----P--MMFSTVLDDVCMSLKFPS 61 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------~-----~--l~~~~~~~d~~~~v~Fs~ 61 (330)
+|+ +++|+||++.+++.+.+|.+|.+.|++++|||||++ . . ...+.+|...|..++|+|
T Consensus 35 ~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~ 113 (611)
T 1nr0_A 35 YCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 113 (611)
T ss_dssp EEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT
T ss_pred eCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC
Confidence 444 579999999999999999999999999999999997 0 1 123457889999999999
Q ss_pred CCCeeEeeeccceeccCCcEEEEEcCC--cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCC
Q psy682 62 NSPICHVTANTYVTLHMPSVVTVTANH--QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAP 137 (330)
Q Consensus 62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~--~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~ 137 (330)
|++.+ ++++.+. .++|++|+. +....++.+|.+ .+.++.|+||+. +++++.++...
T Consensus 114 dg~~l---------------~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~----~v~~v~f~p~~~~~l~s~s~D~~v~ 173 (611)
T 1nr0_A 114 ESKRI---------------AAVGEGRERFGHVFLFDT-GTSNGNLTGQAR----AMNSVDFKPSRPFRIISGSDDNTVA 173 (611)
T ss_dssp TSCEE---------------EEEECCSSCSEEEEETTT-CCBCBCCCCCSS----CEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCEE---------------EEEECCCCceeEEEEeeC-CCCcceecCCCC----CceEEEECCCCCeEEEEEeCCCeEE
Confidence 99986 3444433 358999985 556677789974 677899999985 66544444443
Q ss_pred cceeccC-CCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc-------CCCCcEE----Ee
Q psy682 138 VPKRHLG-DNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF-------DHPNRLF----SS 202 (330)
Q Consensus 138 ~~~~~l~-~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~-------gH~d~Vi----aS 202 (330)
.|... .....++.+|. .+++|+|||++ +++|+.|++||+ |+..+|+.+..+. +|.+.|. .+
T Consensus 174 --lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~-las~s~D~~i~l-wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 174 --IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVL-YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp --EEETTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred --EEECCCCeEeeeeccccCceEEEEECCCCCE-EEEEECCCcEEE-EECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 34321 11223444453 58999999998 566678999999 9998898877773 8999882 11
Q ss_pred --HHHHHhhhccCCCcEEEEcc--------------------------------------------cCceeeecCCCCCC
Q psy682 203 --ISLAWKNCQRDTSDVKVHTT--------------------------------------------FGDLLRSLDPPSGF 236 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~--------------------------------------------~G~ll~tL~~h~~~ 236 (330)
...+ |||.||+||||+. .|+.++++.+|.+
T Consensus 250 dg~~l~---s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~- 325 (611)
T 1nr0_A 250 DGTKIA---SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK- 325 (611)
T ss_dssp TSSEEE---EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-
T ss_pred CCCEEE---EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-
Confidence 2222 5555555555543 2445566778988
Q ss_pred CCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682 237 ASPESVVMSREGVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 237 ~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG 266 (330)
.|.+|+|||||+.|++++ ++++++|.+..
T Consensus 326 -~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 326 -AITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred -CEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999995 88999998653
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=9.6e-29 Score=227.23 Aligned_cols=235 Identities=11% Similarity=0.146 Sum_probs=183.4
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+++...++.+|...|.+++|+|||++ ..+....+|.+.+..+.|+|+
T Consensus 39 ~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 118 (312)
T 4ery_A 39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 57899999999999999999999999999999999999987 222335578888888889888
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK 140 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~ 140 (330)
++.+ ++++.|++|++|+..... +....+|. .++.++.|+||+. +++++.++. +..
T Consensus 119 ~~~l-----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~--i~~ 175 (312)
T 4ery_A 119 SNLI-----------------VSGSFDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIVSSSYDGL--CRI 175 (312)
T ss_dssp SSEE-----------------EEEETTSCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSEEEEEETTSC--EEE
T ss_pred CCEE-----------------EEEeCCCcEEEEECCCCEEEEEecCCC----CcEEEEEEcCCCCEEEEEeCCCc--EEE
Confidence 8864 788889999999987554 45556786 3677899999998 555444443 334
Q ss_pred eccCCC-Ccccee----eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE------EEe---HHHH
Q psy682 141 RHLGDN-FSQKLR----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL------FSS---ISLA 206 (330)
Q Consensus 141 ~~l~~~-~~~~~~----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V------iaS---t~~l 206 (330)
+.+... ....+. ....+++|+||+++|++ |+.|++|++ |++.+++.+..+.+|.+.+ +.. ...+
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKL-WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE-EETTTEEEE-EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred EECCCCceeeEEeccCCCceEEEEECCCCCEEEE-EcCCCeEEE-EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 443221 001111 11246889999999554 568999999 9999999999999998753 111 2233
Q ss_pred HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc---CCeEEEEeeC
Q psy682 207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE---RGHIAAFTMN 265 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~---~~~~~~~s~n 265 (330)
+|+.||+|++|+. +++++++|.+|.+ .|.+++|+|++..+++++ ++++++|..|
T Consensus 254 ---sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 ---SGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---ECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---EECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8999999999976 6899999999999 999999999999999984 8899999865
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=4.7e-29 Score=253.42 Aligned_cols=254 Identities=15% Similarity=0.148 Sum_probs=178.2
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------Ccceee-e------ecCccEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFS-T------VLDDVCM 55 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~-~------~~~d~~~ 55 (330)
|||+.|++||||+..+++.+.+|.+|.+.|++|+|||||++ ..+..+ . +|.+.|.
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 58999999999999999999999999999999999999987 111122 2 6899999
Q ss_pred EEEeCCCCCeeEeeeccce-------------ecc-------------CCcEEEEEcCCcceEEEeCCCCCC-cccCCCC
Q psy682 56 SLKFPSNSPICHVTANTYV-------------TLH-------------MPSVVTVTANHQFAINRWNPDYAA-SIQSPSY 108 (330)
Q Consensus 56 ~v~Fs~~~~v~~~~~~~~~-------------~~~-------------~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h 108 (330)
.++|+||++.++.+..+.. .+. .+...+++++.+++|++|+..... .....||
T Consensus 244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence 9999999998765543220 000 011223455556666777665443 2334588
Q ss_pred CCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC--------CC-------------------ccc----------
Q psy682 109 AETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD--------NF-------------------SQK---------- 150 (330)
Q Consensus 109 ~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~--------~~-------------------~~~---------- 150 (330)
. +.+.+++|+||++ +++++.++...+|....+. +. +.+
T Consensus 324 ~----~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 324 N----KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp S----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred C----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 7 4677899999999 6654444433332211000 00 000
Q ss_pred ----------------------------------e-------------eeeeeEEEEecCCCeEEEeeccCCeEEEeeec
Q psy682 151 ----------------------------------L-------------RVRHNCFVTTVDSRFLLACGFWDNSFREPFTT 183 (330)
Q Consensus 151 ----------------------------------~-------------~~~~~~~~~spDg~~i~asg~~D~tirl~w~~ 183 (330)
+ .....+++|+|||++ +++|+.|++||+ |++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~-lasgs~D~~v~l-wd~ 477 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF-VAVGGQDSKVHV-YKL 477 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE-EEEEETTSEEEE-EEE
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE-EEEeCCCCeEEE-EEc
Confidence 0 001247899999998 666778999999 999
Q ss_pred ccccc--cccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEccc--Cceeee--cCCCCCCCCCcEEEeCCCccEE
Q psy682 184 MYLAL--QEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTTF--GDLLRS--LDPPSGFASPESVVMSREGVIV 251 (330)
Q Consensus 184 ~~g~l--~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~~--G~ll~t--L~~h~~~~~v~~v~fS~dG~~l 251 (330)
+++++ .+. .+|.+.| |.. ...+ +||.|++|++|+.. |+++++ +.+|.+ .|.+|+|||||+.|
T Consensus 478 ~~~~~~~~~~-~~h~~~v~~v~fspdg~~la---s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~--~V~~v~fspdg~~l 551 (611)
T 1nr0_A 478 SGASVSEVKT-IVHPAEITSVAFSNNGAFLV---ATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVRL 551 (611)
T ss_dssp ETTEEEEEEE-EECSSCEEEEEECTTSSEEE---EEETTSCEEEEEGGGTTEESCCCCCCCCSS--CEEEEEECTTSSEE
T ss_pred cCCceeeeec-cCCCCceEEEEECCCCCEEE---EEcCCCCEEEEEcCCCCceeeeeeeeeccc--ceeEEEECCCCCEE
Confidence 76654 344 6899887 222 3344 89999999999874 777776 345988 99999999999999
Q ss_pred EEcc-CCeEEEEeeCC
Q psy682 252 VNYE-RGHIAAFTMNG 266 (330)
Q Consensus 252 ~s~~-~~~~~~~s~nG 266 (330)
|+++ |+++++|..+.
T Consensus 552 asgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EEEETTSCEEEEETTC
T ss_pred EEEECCCcEEEEECCC
Confidence 9996 88999999874
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=5.1e-29 Score=234.23 Aligned_cols=232 Identities=15% Similarity=0.126 Sum_probs=174.4
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C---------------cceeeeecCccEEEEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S---------------PMMFSTVLDDVCMSLK 58 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~---------------~l~~~~~~~d~~~~v~ 58 (330)
|||+.||+|++|++.+++.+.++++|...|.+++|+|+|++ . ......+|.+.+..+.
T Consensus 71 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (340)
T 1got_B 71 LSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150 (340)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEE
T ss_pred EEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEE
Confidence 58999999999999999999999999999999999999987 0 0112346666677777
Q ss_pred eCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCC
Q psy682 59 FPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNA 136 (330)
Q Consensus 59 Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~ 136 (330)
|++++.+ ++++.|++|++|+...+. ..++.+|.+ .+.++.|+||+. +++++.++..
T Consensus 151 ~~~~~~l------------------~s~s~d~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 151 FLDDNQI------------------VTSSGDTTCALWDIETGQQTTTFTGHTG----DVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp EEETTEE------------------EEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCE
T ss_pred ECCCCcE------------------EEEECCCcEEEEECCCCcEEEEEcCCCC----ceEEEEECCCCCEEEEEeCCCcE
Confidence 7766653 677788999999987554 455568874 677899999998 5554444443
Q ss_pred CcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC--CCcE----EEe--HH
Q psy682 137 PVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH--PNRL----FSS--IS 204 (330)
Q Consensus 137 ~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH--~d~V----iaS--t~ 204 (330)
..|.+.. ...+++..|. .+++|+||+++ +++|+.|++||+ |++.+++.+..+..+ ...| +.. ..
T Consensus 209 --~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~i-wd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 209 --KLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRL-FDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp --EEEETTTCSEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred --EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEE-EECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 3444322 1223344443 58899999998 556668999999 999887766554322 2233 111 33
Q ss_pred HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682 205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT 263 (330)
Q Consensus 205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s 263 (330)
.+ +|+.||+|+||+. +++.+.+|.+|.+ .|.+|+|||||+.||+++ ++++++|.
T Consensus 285 l~---~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LL---AGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EE---EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EE---EECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 34 8999999999975 7999999999999 999999999999999996 78898884
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=1.7e-28 Score=232.99 Aligned_cols=234 Identities=14% Similarity=0.042 Sum_probs=176.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------------CcceeeeecCccEEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------------SPMMFSTVLDDVCMS 56 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------------~~l~~~~~~~d~~~~ 56 (330)
||||.||+|++|+..+++...++..|..+|.+++|+|||+. .......+|.+.+..
T Consensus 80 ~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 159 (354)
T 2pbi_B 80 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159 (354)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred EEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEE
Confidence 58999999999999999999999999999999999999976 011234467888888
Q ss_pred EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC--Cc-eeccCC
Q psy682 57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTS 132 (330)
Q Consensus 57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~ 132 (330)
+.|+|++..+ ++++.|++|++|+...+. +.++.+|.. .+.++.|+|+ +. +++++.
T Consensus 160 ~~~~~~~~~l-----------------~t~s~D~~v~lwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 160 CSFTNSDMQI-----------------LTASGDGTCALWDVESGQLLQSFHGHGA----DVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp EEECSSSSEE-----------------EEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECCCSSCCEEEEEET
T ss_pred EEEeCCCCEE-----------------EEEeCCCcEEEEeCCCCeEEEEEcCCCC----CeEEEEEEeCCCCCEEEEEeC
Confidence 8888888864 788889999999987655 455568874 5667888774 44 665455
Q ss_pred CCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC--cE----EEe-
Q psy682 133 NNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN--RL----FSS- 202 (330)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d--~V----iaS- 202 (330)
++...+|....+. ..+.+..|. .+++|+||+++ +++|+.|++||+ |++.+++.+..+..+.. .+ +..
T Consensus 219 Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~l-wd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 219 DKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRL-YDLRADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred CCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEE-EECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence 5544444322222 223344443 58899999998 556678999999 99987776555544332 22 111
Q ss_pred -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682 203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT 263 (330)
Q Consensus 203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s 263 (330)
...+ +|+.||+|+||+. +|+.+.+|.+|.+ .|.+|+|||||+.||+++ ++++++|.
T Consensus 296 g~~l~---~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 296 GRLLF---AGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSEEE---EEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEE---EEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3333 8999999999986 8999999999999 999999999999999996 88898884
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=4.3e-28 Score=228.73 Aligned_cols=239 Identities=12% Similarity=0.098 Sum_probs=171.2
Q ss_pred CcccCCCcEEEeeccccccc---ceeecCCCceeEEEeCCCCCc---------------C-----cceeeeecCccEEEE
Q psy682 1 MSGGDKGIVEVWRTFNLALL---YAFPSCDSSVRSLALSHDQKY---------------S-----PMMFSTVLDDVCMSL 57 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l---~tl~gH~~~V~svafSpdg~~---------------~-----~l~~~~~~~d~~~~v 57 (330)
|||+.|++||||++.+++.. ....+|...|++|+|||||++ + .+..+.+|.+.|..+
T Consensus 32 as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v 111 (345)
T 3fm0_A 32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV 111 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE
T ss_pred EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE
Confidence 58999999999999876533 224799999999999999987 0 123345888999999
Q ss_pred EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCC
Q psy682 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS 132 (330)
Q Consensus 58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~ 132 (330)
+|+|++..+ ++++.|++|++|+.+... .....+|.. .+.++.|+||+. +++++.
T Consensus 112 ~~sp~~~~l-----------------~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 112 AWAPSGNLL-----------------ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ----DVKHVVWHPSQELLASASY 170 (345)
T ss_dssp EECTTSSEE-----------------EEEETTSCEEEEEECTTSCEEEEEEECCCCS----CEEEEEECSSSSCEEEEET
T ss_pred EEeCCCCEE-----------------EEEECCCeEEEEECCCCCCeEEEEEecCcCC----CeEEEEECCCCCEEEEEeC
Confidence 999999975 888899999999986543 334557864 577899999998 666555
Q ss_pred CCCCCcceeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccc---------------ccccccc
Q psy682 133 NNNAPVPKRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYL---------------ALQEGKF 193 (330)
Q Consensus 133 ~~~~~~~~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g---------------~l~~~l~ 193 (330)
++...++....+.. ...++.+|. .+++|+|||++ +++|+.|++||+ |+.... +.+.++.
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~v~i-W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRI-WRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCeEEE-eccccCCCCccceeeccCCccceeEEec
Confidence 55444443322110 112333443 58899999999 556668999999 986322 2233444
Q ss_pred C-CCCcEE--E-e---HHHHHhhhccCCCcEEEEcccCc----------eeeecCCCCCCCCCcEEEeCCCc-cEEEEcc
Q psy682 194 D-HPNRLF--S-S---ISLAWKNCQRDTSDVKVHTTFGD----------LLRSLDPPSGFASPESVVMSREG-VIVVNYE 255 (330)
Q Consensus 194 g-H~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~~~G~----------ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~ 255 (330)
+ |...|. + + ...+ +|+.|++|++|+.+.. ..+.+.+|.+ .|++|+|+|++ .+|||++
T Consensus 249 ~~h~~~v~~v~~~~~~~~l~---s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 249 GFHSRTIYDIAWCQLTGALA---TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ--DVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp SSCSSCEEEEEECTTTCCEE---EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS--CEEEEEECSSSTTEEEEEE
T ss_pred CCCCCcEEEEEEecCCCEEE---EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC--cEeEeEEeCCCceEEEEcC
Confidence 4 766662 2 1 2233 8999999999976421 1344678988 99999999998 4999985
Q ss_pred -CCeEEEEeeCCc
Q psy682 256 -RGHIAAFTMNGN 267 (330)
Q Consensus 256 -~~~~~~~s~nG~ 267 (330)
|+++++|....+
T Consensus 324 ~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 324 DDGEVAFWKYQRP 336 (345)
T ss_dssp TTSCEEEEEECC-
T ss_pred CCCcEEEEEecCC
Confidence 889999987654
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=4.5e-28 Score=230.66 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=176.0
Q ss_pred CcccC------CCcEEEeeccccccc----ceeecCCCceeEEEeCCCCCc-----------------Ccc----eeeee
Q psy682 1 MSGGD------KGIVEVWRTFNLALL----YAFPSCDSSVRSLALSHDQKY-----------------SPM----MFSTV 49 (330)
Q Consensus 1 asgs~------d~~V~lW~~~~g~~l----~tl~gH~~~V~svafSpdg~~-----------------~~l----~~~~~ 49 (330)
||||. |++|++|+..+|... ....+|...|.+|+|+||+++ ... ....+
T Consensus 58 as~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~ 137 (357)
T 4g56_B 58 LAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYE 137 (357)
T ss_dssp EEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECC
T ss_pred EEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCC
Confidence 45665 788999998776543 445789999999999999987 111 11237
Q ss_pred cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc--
Q psy682 50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-- 126 (330)
Q Consensus 50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-- 126 (330)
|++.|..++|+||+..+ ++++.|++|++|+..... +..+.+|. ..+.++.|++|+.
T Consensus 138 h~~~V~~v~~spdg~~l-----------------~sgs~dg~v~iwd~~~~~~~~~~~~h~----~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 138 HDDIVKTLSVFSDGTQA-----------------VSGGKDFSVKVWDLSQKAVLKSYNAHS----SEVNCVAACPGKDTI 196 (357)
T ss_dssp CSSCEEEEEECSSSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTCSSC
T ss_pred CCCCEEEEEECCCCCEE-----------------EEEeCCCeEEEEECCCCcEEEEEcCCC----CCEEEEEEccCCCce
Confidence 88999999999999975 888899999999987555 45556887 4677899999985
Q ss_pred eeccCCCCCCCcceeccCCCCccce-----eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--
Q psy682 127 LTHPTSNNNAPVPKRHLGDNFSQKL-----RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-- 199 (330)
Q Consensus 127 l~~~s~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-- 199 (330)
+++++.++...+|..+.+.+. ..+ .....+++|+||+..++++|+.|++||+ |++.++++++++.+|.+.|
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~-wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL-VNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCB-CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE-EESSCGGGCEEECCCSSCEEE
T ss_pred eeeeccCCceEEEECCCCcee-eeeeeccccccccchhhhhcccceEEEeecccceeE-EECCCCcEeEEEeccceeEEE
Confidence 454344443333322212211 111 1123588899997777888889999999 9999999999999999988
Q ss_pred EE-e----HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC-CccEEEEcc-CCeEEEEeeC
Q psy682 200 FS-S----ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 200 ia-S----t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~~-~~~~~~~s~n 265 (330)
++ + .+.+ +||.||+|+||+. +|++++++ +|.+ .|++|+||| ||++||+++ |++++.|.++
T Consensus 275 l~~sp~~~~~la---sgs~D~~i~iwd~~~~~~~~~~-~H~~--~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 275 LAYSYHSSPFLA---SISEDCTVAVLDADFSEVFRDL-SHRD--FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEECSSSSCCEE---EEETTSCEEEECTTSCEEEEEC-CCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEcCCCCCEEE---EEeCCCEEEEEECCCCcEeEEC-CCCC--CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 22 2 3444 8999999999986 57777765 7988 999999998 899999986 8899999864
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-27 Score=224.77 Aligned_cols=239 Identities=10% Similarity=0.042 Sum_probs=165.3
Q ss_pred CcccCCCcEEEeecccc--ccccee-ec-CCCceeEEEeCCCCCc-------------C------------cceeeeecC
Q psy682 1 MSGGDKGIVEVWRTFNL--ALLYAF-PS-CDSSVRSLALSHDQKY-------------S------------PMMFSTVLD 51 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g--~~l~tl-~g-H~~~V~svafSpdg~~-------------~------------~l~~~~~~~ 51 (330)
|||+.|++||||++..+ +++.++ .+ |...|++|+|+|||++ . ++..+.+|.
T Consensus 28 as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 107 (330)
T 2hes_X 28 ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE 107 (330)
T ss_dssp EEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---
T ss_pred EEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence 58999999999999865 455566 45 9999999999999987 0 112345788
Q ss_pred ccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-----CcccCCCCCCCCCCCCCCccccCCCc
Q psy682 52 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-----ASIQSPSYAETPGSPPGNLPLTLDPI 126 (330)
Q Consensus 52 d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-----~~~~~~~h~~~~~~~~~~l~fs~D~~ 126 (330)
+.|..++|+|+++.+ ||++.|++|++|+.+.. .+..+.+|. ..+.++.|+||+.
T Consensus 108 ~~V~~v~~sp~g~~l-----------------as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~ 166 (330)
T 2hes_X 108 NEVKGVAWSNDGYYL-----------------ATCSRDKSVWIWETDESGEEYECISVLQEHS----QDVKHVIWHPSEA 166 (330)
T ss_dssp -CEEEEEECTTSCEE-----------------EEEETTSCEEEEECCTTCCCCEEEEEECCCS----SCEEEEEECSSSS
T ss_pred CcEEEEEECCCCCEE-----------------EEEeCCCEEEEEeccCCCCCeEEEEEeccCC----CceEEEEECCCCC
Confidence 889999999999875 88899999999998422 134556887 4677899999998
Q ss_pred -eeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecC--CCeEEEeeccCCeEEEeeecccc--------ccccc
Q psy682 127 -LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVD--SRFLLACGFWDNSFREPFTTMYL--------ALQEG 191 (330)
Q Consensus 127 -l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spD--g~~i~asg~~D~tirl~w~~~~g--------~l~~~ 191 (330)
+++++.++...+|....+. .....+.+|. .+++|+|+ +.+ +++|+.|++||+ |++..+ +....
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~s~D~~v~i-w~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR-LCSGSDDSTVRV-WKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE-EEEEETTSCEEE-EEEEEECTTSCEEEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE-EEEEeCCCeEEE-EEecCCCccccceeEEeee
Confidence 6654555544444322111 1122344443 57889999 656 667778999999 999765 34555
Q ss_pred ccC-CCCcEEE---e--HHHHHhhhccCCCcEEEEcc-cC--ceee-ecCCCCCCCCCcEEEeCC--CccEEEEcc-CCe
Q psy682 192 KFD-HPNRLFS---S--ISLAWKNCQRDTSDVKVHTT-FG--DLLR-SLDPPSGFASPESVVMSR--EGVIVVNYE-RGH 258 (330)
Q Consensus 192 l~g-H~d~Via---S--t~~lW~~SgS~Dgtvkl~~~-~G--~ll~-tL~~h~~~~~v~~v~fS~--dG~~l~s~~-~~~ 258 (330)
+.+ |.+.|.. + ...+ ||+.||+|+||+. +| +.+. .+.+|.. ..|++|+|+| ||++||+++ +++
T Consensus 245 ~~~~h~~~v~~v~~s~~~~l~---s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~-~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGFNGLIA---SVGADGVLAVYEEVDGEWKVFAKRALCHGV-YEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp CCSCCSSCEEEEEECTTSCEE---EEETTSCEEEEEEETTEEEEEEEESCTTTT-SCEEEEEEC-----CCEEEEETTSE
T ss_pred cccccccceEEEEEcCCCEEE---EEeCCCEEEEEEcCCCceEEEecccccccc-ceEEEEEEecCCCceEEEEecCCCc
Confidence 655 8888721 2 2223 8999999999986 45 3343 3467764 2799999999 799999985 889
Q ss_pred EEEEeeCC
Q psy682 259 IAAFTMNG 266 (330)
Q Consensus 259 ~~~~s~nG 266 (330)
+++|.++.
T Consensus 321 v~~W~~~~ 328 (330)
T 2hes_X 321 VNFWSLEK 328 (330)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99998653
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.95 E-value=1.2e-27 Score=221.52 Aligned_cols=230 Identities=9% Similarity=0.080 Sum_probs=174.5
Q ss_pred cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
++.++|.+|.+.|++|+|||||++ ..+....+|+..+..++|+|+++.+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l------------- 70 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI------------- 70 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-------------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEE-------------
Confidence 456789999999999999999987 1123345778888888899888874
Q ss_pred cEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682 80 SVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH-- 155 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~-- 155 (330)
++++.|++|++|+.+.+. +..+.+|.+ .+.++.|+||+. +++++.++...+|...-+..+.+.+.+|.
T Consensus 71 ----~s~s~d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 71 ----IVGSDDFRIRVFNYNTGEKVVDFEAHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp ----EEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred ----EEECCCCEEEEEECCCCcEEEEEeCCCC----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 888899999999987555 555668974 677899999998 66655555554444332223334455554
Q ss_pred -eEEEEec-CCCeEEEeeccCCeEEEeeeccccccccccc-CCCCcE----EEe----HHHHHhhhccCCCcEEEEcc-c
Q psy682 156 -NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKF-DHPNRL----FSS----ISLAWKNCQRDTSDVKVHTT-F 223 (330)
Q Consensus 156 -~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~-gH~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~-~ 223 (330)
.+++|+| |+++ +++|+.|++||+ |++.+++....+. +|...| +.. ...+ +||.||+|+||+. +
T Consensus 143 v~~v~~~p~~~~~-l~sgs~D~~v~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 143 VMCVAFNPKDPST-FASGCLDRTVKV-WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQT 217 (304)
T ss_dssp EEEEEECTTCTTE-EEEEETTSEEEE-EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE---EEETTSEEEEEETTT
T ss_pred EEEEEECCCCCCE-EEEEeCCCeEEE-EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE---EEcCCCeEEEEeCCC
Confidence 5899999 5666 667779999999 9998776655554 454545 111 2334 8999999999976 7
Q ss_pred CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682 224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~ 275 (330)
|+++++|++|.. .|.+++|+|+|++||+++ ++++++|... ++.+.++..+
T Consensus 218 ~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 218 KSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp TEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999 999999999999999995 8899999864 6777777644
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1.6e-27 Score=222.52 Aligned_cols=236 Identities=12% Similarity=0.118 Sum_probs=173.7
Q ss_pred CcccCCCcEEEeeccc-----ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682 1 MSGGDKGIVEVWRTFN-----LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL 57 (330)
Q Consensus 1 asgs~d~~V~lW~~~~-----g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v 57 (330)
|||+.|++|++|++.. +..+.+|++|...|++++|+|||++ ..+..+.+|.+.|+.+
T Consensus 34 ~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~ 113 (319)
T 3frx_A 34 LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113 (319)
T ss_dssp EEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE
Confidence 5899999999999864 4467889999999999999999987 2233456899999999
Q ss_pred EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCC------c-eecc
Q psy682 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP------I-LTHP 130 (330)
Q Consensus 58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~------~-l~~~ 130 (330)
.|+|++..+ +|++.|++|++|+.++..+.++.+|.+ .+.++.|.|+. . ++++
T Consensus 114 ~~~~~~~~l-----------------~s~s~D~~i~vwd~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 114 DIDKKASMI-----------------ISGSRDKTIKVWTIKGQCLATLLGHND----WVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp EECTTSCEE-----------------EEEETTSCEEEEETTSCEEEEECCCSS----CEEEEEECCC------CCEEEEE
T ss_pred EEcCCCCEE-----------------EEEeCCCeEEEEECCCCeEEEEeccCC----cEEEEEEccCCCCCCCccEEEEE
Confidence 999999875 888999999999998887888889974 56678888854 3 5543
Q ss_pred CCCCCCCcceeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEe-
Q psy682 131 TSNNNAPVPKRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSS- 202 (330)
Q Consensus 131 s~~~~~~~~~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS- 202 (330)
+.++ .+..|.+... ....+.+|. .+++|+|||++ +++|+.|++||+ |++.+++.+..+..|..+. +.+
T Consensus 173 ~~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~v~~~~~sp~ 248 (319)
T 3frx_A 173 GNDK--MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIML-WNLAAKKAMYTLSAQDEVFSLAFSPN 248 (319)
T ss_dssp ETTS--CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE-EEEEETTCEEEE-EETTTTEEEEEEECCSCEEEEEECSS
T ss_pred eCCC--EEEEEECCcchhheeecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEE-EECCCCcEEEEecCCCcEEEEEEcCC
Confidence 3333 3444544221 112233332 58899999998 555668999999 9999999988888775432 222
Q ss_pred -HHHHHhhhccCCCcEEEEccc-CceeeecCCCCC------CCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 203 -ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDPPSG------FASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 203 -t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~h~~------~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
... .++.++.+++|..+ +.+++.++++.. ...|.+++|||||+.||+++ ++.+++|.+.
T Consensus 249 ~~~l----a~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 249 RYWL----AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp SSEE----EEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCEE----EEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 222 33445679999764 566677765321 12688999999999999995 8889999853
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=1.5e-27 Score=224.03 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=167.4
Q ss_pred CcccCCCcEEEeeccc-------ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEE
Q psy682 1 MSGGDKGIVEVWRTFN-------LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCM 55 (330)
Q Consensus 1 asgs~d~~V~lW~~~~-------g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~ 55 (330)
|||+.|++||+|++.+ ++...++.+|...|++++|+||+++ ..+..+.+|.+.|.
T Consensus 43 ~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~ 122 (343)
T 2xzm_R 43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122 (343)
T ss_dssp EEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE
T ss_pred EEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE
Confidence 5899999999999864 4567789999999999999999987 22344568999999
Q ss_pred EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC---CCCCCCCCCCCCccccCCC-------
Q psy682 56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP---SYAETPGSPPGNLPLTLDP------- 125 (330)
Q Consensus 56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~---~h~~~~~~~~~~l~fs~D~------- 125 (330)
.+.|+|++..+ ++++.|++|++|+..+....... +|. +.+.++.|+|++
T Consensus 123 ~v~~sp~~~~l-----------------~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~ 181 (343)
T 2xzm_R 123 SVAFSPDNRQI-----------------LSAGAEREIKLWNILGECKFSSAEKENHS----DWVSCVRYSPIMKSANKVQ 181 (343)
T ss_dssp EEEECSSTTEE-----------------EEEETTSCEEEEESSSCEEEECCTTTSCS----SCEEEEEECCCCCSCSCCC
T ss_pred EEEECCCCCEE-----------------EEEcCCCEEEEEeccCCceeeeecccCCC----ceeeeeeeccccccccccC
Confidence 99999999975 78888999999998754433332 565 467789999986
Q ss_pred ----ceeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc
Q psy682 126 ----ILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR 198 (330)
Q Consensus 126 ----~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ 198 (330)
.+++++.++... .|........++..|. .+++|+|||++ +++|+.|++||+ |++...........|...
T Consensus 182 ~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~i-wd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 182 PFAPYFASVGWDGRLK--VWNTNFQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLI-WDILNLTYPQREFDAGST 257 (343)
T ss_dssp SSCCEEEEEETTSEEE--EEETTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEE-EESSCCSSCSEEEECSSC
T ss_pred CCCCEEEEEcCCCEEE--EEcCCCceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEE-EECCCCcccceeecCCCc
Confidence 356544444333 3333222222344443 58899999999 556678999999 998433322233334444
Q ss_pred E----EEe-HHHHHhhhccCCCcEEEEcc-cCceee--ecC-----------CCCCCCCCcEEEeCCCccEEEEcc-CCe
Q psy682 199 L----FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLR--SLD-----------PPSGFASPESVVMSREGVIVVNYE-RGH 258 (330)
Q Consensus 199 V----iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~--tL~-----------~h~~~~~v~~v~fS~dG~~l~s~~-~~~ 258 (330)
| +.. .-.+ +++.|++|+||+. +++.+. ++. +|.+ .|.+|+|+|+|+.||+|+ ++.
T Consensus 258 v~~v~~sp~~~~l---a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 258 INQIAFNPKLQWV---AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp EEEEEECSSSCEE---EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCCEEEEETTSE
T ss_pred EEEEEECCCCCEE---EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCeEEEecCCce
Confidence 5 112 1111 5667999999976 455444 554 6766 899999999999999985 889
Q ss_pred EEEEeeC
Q psy682 259 IAAFTMN 265 (330)
Q Consensus 259 ~~~~s~n 265 (330)
+++|..+
T Consensus 333 v~~w~~~ 339 (343)
T 2xzm_R 333 IRTFSFE 339 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999753
No 19
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=3.3e-27 Score=214.36 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=153.3
Q ss_pred ccCCCcEEEeecccccccceee--cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682 3 GGDKGIVEVWRTFNLALLYAFP--SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS 80 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~--gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~ 80 (330)
.+.|++|||||+.+|+.+.+++ +|...|++|+|+|+|++
T Consensus 41 vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~--------------------------------------- 81 (318)
T 4ggc_A 41 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY--------------------------------------- 81 (318)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE---------------------------------------
T ss_pred EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCE---------------------------------------
Confidence 3469999999999999888765 67888999999999887
Q ss_pred EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---
Q psy682 81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH--- 155 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--- 155 (330)
+||++.|++|++|+...+. +.+..+|.. ....+++++. +++++.++....+...........+..+.
T Consensus 82 --l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~------~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (318)
T 4ggc_A 82 --LAVGTSSAEVQLWDVQQQKRLRNMTSHSA------RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 153 (318)
T ss_dssp --EEEEETTSEEEEEETTTTEEEEEEECCSS------CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred --EEEEECCCcEEEeecCCceeEEEecCccc------eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce
Confidence 4888899999999987655 455558863 2345666777 44322222211111111111112233332
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccc----cccccCCCCcE--------------EEe-----HHHHHhh---
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPNRL--------------FSS-----ISLAWKN--- 209 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d~V--------------iaS-----t~~lW~~--- 209 (330)
.+++++++++++ ++++.|++||+ |++.+++. ......|...| +++ ++++|+.
T Consensus 154 ~~~~~~~~~~~l-~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 154 CGLRWAPDGRHL-ASGGNDNLVNV-WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp EEEEECTTSSEE-EEEETTSCEEE-EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred EEEEEcCCCCEE-EEEecCcceeE-EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence 577899999984 55668999999 99987763 33444555544 122 6778876
Q ss_pred ---------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEE
Q psy682 210 ---------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIA 260 (330)
Q Consensus 210 ---------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~ 260 (330)
+|+.||+|+||+. +|+++++|++|.+ .|++|+|||||+.|||++ |++++
T Consensus 232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 232 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLR 309 (318)
T ss_dssp CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEE
T ss_pred cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEE
Confidence 6779999999975 7999999999999 999999999999999996 88999
Q ss_pred EEee
Q psy682 261 AFTM 264 (330)
Q Consensus 261 ~~s~ 264 (330)
+|.+
T Consensus 310 iWd~ 313 (318)
T 4ggc_A 310 LWRC 313 (318)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9975
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=6.1e-27 Score=216.07 Aligned_cols=213 Identities=11% Similarity=0.051 Sum_probs=156.2
Q ss_pred CcccCCCcEEEeeccc--ccccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTFN--LALLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~~--g~~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
|||+.|++||||++.+ ++++.+|.+|.+.|++|+|+|+ |++
T Consensus 25 as~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~----------------------------------- 69 (297)
T 2pm7_B 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----------------------------------- 69 (297)
T ss_dssp EEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSE-----------------------------------
T ss_pred EEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCE-----------------------------------
Confidence 5899999999999974 4778899999999999999874 444
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCCC-cc
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDNF-SQ 149 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~~-~~ 149 (330)
+||++.|++|++|+...+. +....+|. ..+.++.|+|| +. +++++.++...++....+... ..
T Consensus 70 ------l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 70 ------LASCSYDGKVMIWKEENGRWSQIAVHAVHS----ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp ------EEEEETTTEEEEEEBSSSCBCCCEEECCCS----SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred ------EEEEcCCCEEEEEEcCCCceEEEEEeecCC----CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 5888999999999997653 34445786 36778999998 55 665455444333322211111 12
Q ss_pred ceeeee---eEEEEecC-------------CCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEE----Ee---
Q psy682 150 KLRVRH---NCFVTTVD-------------SRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLF----SS--- 202 (330)
Q Consensus 150 ~~~~~~---~~~~~spD-------------g~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Vi----aS--- 202 (330)
.+..|. .+++|+|+ +++ +++|+.|++||+ |++.+++ +..++.+|.+.|. .+
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~-l~sgs~D~~v~l-wd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI-WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCE-EEEEETTSCEEE-EEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcce-EEEEcCCCcEEE-EEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence 233332 57889997 456 666778999999 9998766 6778999999882 22
Q ss_pred --HHHHHhhhccCCCcEEEEcccC---ce-eeec--CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 203 --ISLAWKNCQRDTSDVKVHTTFG---DL-LRSL--DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~~G---~l-l~tL--~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
...+ |||.||+|+||+.+. .. ...+ .+|.+ .|.+++|||||+.||+++ ++++++|..+
T Consensus 218 ~~~~la---s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 218 LRSYMA---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSEEEE---EEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CceEEE---EEECCCcEEEEEeCCCCCccceeeeecccCCC--cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 2334 999999999998643 22 2344 56766 899999999999999985 8899999865
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=6.6e-27 Score=226.91 Aligned_cols=251 Identities=13% Similarity=0.062 Sum_probs=169.9
Q ss_pred CcccCCCcEEEeecccccc--cceeecCCCceeEEEeCC-CCCcCcceeeeecCcc-EEEEEeCCCCCeeEeeec-----
Q psy682 1 MSGGDKGIVEVWRTFNLAL--LYAFPSCDSSVRSLALSH-DQKYSPMMFSTVLDDV-CMSLKFPSNSPICHVTAN----- 71 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~--l~tl~gH~~~V~svafSp-dg~~~~l~~~~~~~d~-~~~v~Fs~~~~v~~~~~~----- 71 (330)
|+|+.||+|+|||+.+++. ...+.||.+.|++|+|+| |+++ +.++..|. |....+..+-........
T Consensus 136 asGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~----l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 136 AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ----FYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp EEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTE----EEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred EEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCE----EEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 6899999999999987654 445679999999999998 5665 44443332 222222111000000000
Q ss_pred -cceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCc
Q psy682 72 -TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFS 148 (330)
Q Consensus 72 -~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~ 148 (330)
....+.+++..+++++.+++|++|+.++..+.++.+|.+ .+.++.|+|++. +++++.++...+|..+......
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~----~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKK----KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSS----CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccc----eEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 012334455556999999999999999888888889974 677899999986 4444445544444222111110
Q ss_pred --cceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-----------------EE--e--
Q psy682 149 --QKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------------FS--S-- 202 (330)
Q Consensus 149 --~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------------ia--S-- 202 (330)
.....| ..+++|+|||++|+ +|+.|++||+ |++.+++....+.+|.... ++ +
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~-s~~~D~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLL-TTDQKSEIRV-YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP 365 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEE-EEESSSCEEE-EESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC
T ss_pred eEEEeeeccccccceeECCCCCeeE-EEcCCCEEEE-EECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcC
Confidence 111222 25778999999955 5568999999 9999888877777776432 11 1
Q ss_pred --HHHHHhhhccCCCcEEEEcc-cCceeeecC-CCCCCCCCcEE-EeCCCccEEEEccCCeEEEEeeC
Q psy682 203 --ISLAWKNCQRDTSDVKVHTT-FGDLLRSLD-PPSGFASPESV-VMSREGVIVVNYERGHIAAFTMN 265 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~-~h~~~~~v~~v-~fS~dG~~l~s~~~~~~~~~s~n 265 (330)
...+| +++.+++|++|+. +|+++.+|. +|.. .|.++ +|||||++||+|+++++++|++.
T Consensus 366 d~~~~~~--~~~~~~~i~iwd~~~g~~~~~l~~~~~~--~v~s~~~fspdg~~lasg~d~~i~iW~~~ 429 (435)
T 4e54_B 366 DPNFKSC--TPYELRTIDVFDGNSGKMMCQLYDPESS--GISSLNEFNPMGDTLASAMGYHILIWSQQ 429 (435)
T ss_dssp CTTSCCS--STTCCCCEEEECSSSCCEEEEECCSSCC--CCCCEEEECTTSSCEEEECSSEEEECCCC
T ss_pred CCCeEEE--EecCCCEEEEEECCCCcEEEEEeCCCCC--cEEEEEEECCCCCEEEEEcCCcEEEEECC
Confidence 23332 5677889999975 799999986 4555 78887 69999999999999999999754
No 22
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=6.4e-27 Score=223.64 Aligned_cols=221 Identities=8% Similarity=0.002 Sum_probs=147.1
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV 81 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~ 81 (330)
+|+.|++||+|++..++.... .+....+.. ...+++.+..++|||||+. +
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~------~~~~~~~~~---------~~~~~~~~~~v~fSpDg~~---------------l 148 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLE------FLTSVDFDA---------STNADDYTKLVYISREGTV---------------A 148 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEE------EEEEECSSC---------CCCTTCCEEEEEECTTSSC---------------E
T ss_pred EecCCCcEEEEEecCCCceEE------Eeeeeceee---------cCCcccCEEEEEEcCCCCE---------------E
Confidence 577899999999865432111 111111111 1122333444444444444 3
Q ss_pred EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CC-Cc-cceee---ee
Q psy682 82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DN-FS-QKLRV---RH 155 (330)
Q Consensus 82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~-~~-~~~~~---~~ 155 (330)
++||++.|++|++|+...........|.. .+.++.|+||+++++.++ +.....+... +. .. ..... ..
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~~~~~~~----~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKFEIETRG----EVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEEEEECSS----CCCEEEECTTSSEEEEEC--SSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEEEeCCCC----ceEEEEEccCCceEEecc--ceeEEEEEeccCcceeeeecCCCCCCE
Confidence 67899999999999998776666566753 577899999999543222 2233332221 11 10 01111 23
Q ss_pred eEEEEecCCCeEEEeeccCC----eEEEeeecccccc----cccccCCCCcEE--E-e---HHHHHhhhccCCCcEEEEc
Q psy682 156 NCFVTTVDSRFLLACGFWDN----SFREPFTTMYLAL----QEGKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKVHT 221 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~----tirl~w~~~~g~l----~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~ 221 (330)
.+++|+|||++++++ +.|+ ++++ |++..++. ...+.+|...|. + | ...+ +||.||+|+||+
T Consensus 223 ~~v~fspdg~~l~~~-s~d~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la---sgs~D~~V~iwd 297 (365)
T 4h5i_A 223 SKINFIADDTVLIAA-SLKKGKGIVLTK-ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV---LASNDNSIALVK 297 (365)
T ss_dssp EEEEEEETTEEEEEE-EESSSCCEEEEE-EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE---EEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEE-ecCCcceeEEee-cccccceecceeeeeecCCCCCeEeEEECCCCCceE---EEcCCCEEEEEE
Confidence 578899999995554 4676 5788 98865532 456788988872 1 2 4444 899999999997
Q ss_pred c-cCceeee-cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 222 T-FGDLLRS-LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 222 ~-~G~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
. +|+++++ +++|.+ .|++|+|||||++|||++ |+++++|.+.
T Consensus 298 ~~~~~~~~~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 298 LKDLSMSKIFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp TTTTEEEEEETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 6 7999988 589999 999999999999999996 8899999864
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=1.4e-26 Score=222.04 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=171.5
Q ss_pred cccCCCcEEEeecccccccceeecCCC------------------ceeEEEeCCCCCc------------------Ccce
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDS------------------SVRSLALSHDQKY------------------SPMM 45 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~------------------~V~svafSpdg~~------------------~~l~ 45 (330)
+|+ |++|++|++.+|+.+.++.+|.. .|++|+|||||+. ..+.
T Consensus 81 ~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~ 159 (393)
T 1erj_A 81 TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 159 (393)
T ss_dssp EEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 444 78999999999999999887753 4999999999987 1223
Q ss_pred eeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-C
Q psy682 46 FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-D 124 (330)
Q Consensus 46 ~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D 124 (330)
.+.+|...|..++|+|++..+ ++++.|++|++|+...+.......|. +.+.++.|+| |
T Consensus 160 ~~~~h~~~v~~~~~~p~~~~l-----------------~s~s~d~~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~ 218 (393)
T 1erj_A 160 ILQGHEQDIYSLDYFPSGDKL-----------------VSGSGDRTVRIWDLRTGQCSLTLSIE----DGVTTVAVSPGD 218 (393)
T ss_dssp EECCCSSCEEEEEECTTSSEE-----------------EEEETTSEEEEEETTTTEEEEEEECS----SCEEEEEECSTT
T ss_pred EEccCCCCEEEEEEcCCCCEE-----------------EEecCCCcEEEEECCCCeeEEEEEcC----CCcEEEEEECCC
Confidence 456889999999999999875 78888999999999766544333343 3567899999 8
Q ss_pred Cc-eeccCCCCCCCcceeccCCCCccce-------eee---eeEEEEecCCCeEEEeeccCCeEEEeeecccc-------
Q psy682 125 PI-LTHPTSNNNAPVPKRHLGDNFSQKL-------RVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL------- 186 (330)
Q Consensus 125 ~~-l~~~s~~~~~~~~~~~l~~~~~~~~-------~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g------- 186 (330)
+. +++++.++...+|....+.. .+.+ .+| ..+++|+|||++ +++|+.|++||+ |++.++
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~-wd~~~~~~~~~~~ 295 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKL-WNLQNANNKSDSK 295 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEE-EEC----------
T ss_pred CCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEE-EECCCCCCccccc
Confidence 88 55544444433332221111 1111 122 357899999999 556678999999 998653
Q ss_pred -----cccccccCCCCcEEE---e---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC------Cc
Q psy682 187 -----ALQEGKFDHPNRLFS---S---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR------EG 248 (330)
Q Consensus 187 -----~l~~~l~gH~d~Via---S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~------dG 248 (330)
.+..++.+|.+.|.. + ...+ |||.||+|++|+. +|+.+.+|.+|.+ .|.+|+|+| +|
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYIL---SGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVANGSSLGPEY 370 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEE---EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECSSCTTCTTC
T ss_pred CCCCCcceEEEecccCcEEEEEECCCCCEEE---EEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecCCcCcCCCC
Confidence 345678899998832 1 2233 9999999999975 7999999999999 999999886 79
Q ss_pred cEEEEcc-CCeEEEEeeC
Q psy682 249 VIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 249 ~~l~s~~-~~~~~~~s~n 265 (330)
.+||+++ |+++++|...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred CEEEEECCCCcEEECccc
Confidence 9999995 8899999854
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.94 E-value=1.3e-26 Score=224.26 Aligned_cols=237 Identities=10% Similarity=0.086 Sum_probs=181.4
Q ss_pred EEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeee
Q psy682 9 VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTA 70 (330)
Q Consensus 9 V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~ 70 (330)
.+.|.. ......++.||.+.|++++|+|++++ .....+.+|.+.|..++|+|+++.+
T Consensus 91 ~~~~~~-~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l---- 165 (410)
T 1vyh_C 91 PKEWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL---- 165 (410)
T ss_dssp -CCCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE----
T ss_pred cccccc-CCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE----
Confidence 344543 33556789999999999999999887 2234466899999999999999975
Q ss_pred ccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc
Q psy682 71 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS 148 (330)
Q Consensus 71 ~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~ 148 (330)
++++.|++|++|+.++.. +.++.+|.. .+.++.|+||+. +++++.++...+|....+. ..
T Consensus 166 -------------~sgs~D~~i~iwd~~~~~~~~~~~~h~~----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~ 227 (410)
T 1vyh_C 166 -------------ASCSADMTIKLWDFQGFECIRTMHGHDH----NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CV 227 (410)
T ss_dssp -------------EEEETTSCCCEEETTSSCEEECCCCCSS----CEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EE
T ss_pred -------------EEEeCCCeEEEEeCCCCceeEEEcCCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EE
Confidence 888899999999987655 556668974 677899999998 6654444443333322222 12
Q ss_pred cceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--H----------------
Q psy682 149 QKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--I---------------- 203 (330)
Q Consensus 149 ~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t---------------- 203 (330)
.++.+|. .+++++|||++ +++|+.|++||+ |++.+++....+.+|...|- .. .
T Consensus 228 ~~~~~h~~~v~~~~~~~~g~~-l~s~s~D~~v~v-wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 228 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRV-WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EEEECCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EEEeCCCccEEEEEECCCCCE-EEEEcCCCeEEE-EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 3344443 57889999998 555668999999 99999999999999999882 11 0
Q ss_pred ----HHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc
Q psy682 204 ----SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN 275 (330)
Q Consensus 204 ----~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~ 275 (330)
..+ +||.||+|+||+. +|+.+++|.+|.+ .|.+|+|+|+|+.|++++ ++.++.|.. +|+.+..+..|
T Consensus 306 ~~g~~l~---sgs~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 306 KPGPFLL---SGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp --CCEEE---EEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred CCCCEEE---EEeCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 122 8999999999985 7999999999999 999999999999999985 888999976 45666666544
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=215.36 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=168.5
Q ss_pred ccccceeecCCCceeEEEeCCCCC----c----------------Cc----ceeeeecCccEEEEEeCCCCCeeEeeecc
Q psy682 17 LALLYAFPSCDSSVRSLALSHDQK----Y----------------SP----MMFSTVLDDVCMSLKFPSNSPICHVTANT 72 (330)
Q Consensus 17 g~~l~tl~gH~~~V~svafSpdg~----~----------------~~----l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~ 72 (330)
|.+.+.+++|.+.|++|+|+|+++ + .. ...+.+|...|..+.|+|+++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l------ 95 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA------ 95 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEE------
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEE------
Confidence 566677899999999999998643 2 00 11244788888888888888864
Q ss_pred ceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC-Ccc
Q psy682 73 YVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-FSQ 149 (330)
Q Consensus 73 ~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~-~~~ 149 (330)
+|++.|++|++|+...+. +....+|. ..+.++.|+||++ +++++.++. +..+.+... ...
T Consensus 96 -----------~s~s~D~~i~lWd~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~g~~dg~--v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 96 -----------ASSSLDAHIRLWDLENGKQIKSIDAGP----VDAWTLAFSPDSQYLATGTHVGK--VNIFGVESGKKEY 158 (321)
T ss_dssp -----------EEEETTSEEEEEETTTTEEEEEEECCT----TCCCCEEECTTSSEEEEECTTSE--EEEEETTTCSEEE
T ss_pred -----------EEEeCCCcEEEEECCCCCEEEEEeCCC----ccEEEEEECCCCCEEEEEcCCCc--EEEEEcCCCceeE
Confidence 889999999999987554 44444664 3567899999999 554333332 333333211 111
Q ss_pred ceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEEE
Q psy682 150 KLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKVH 220 (330)
Q Consensus 150 ~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl~ 220 (330)
.+..+ ..+++|+|||++ +++|+.|++|++ |++.++++++.+.+|...| + .. ...+ +||.||+|+||
T Consensus 159 ~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~---s~s~dg~i~iw 233 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKY-LASGAIDGIINI-FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV---TASDDGYIKIY 233 (321)
T ss_dssp EEECSSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEEEECCCSSCCCEEEECTTSCEEE---EECTTSCEEEE
T ss_pred EecCCCceEEEEEECCCCCE-EEEEcCCCeEEE-EECCCCcEEEEEcccCCceeEEEEcCCCCEEE---EEcCCCeEEEE
Confidence 12222 257889999999 556678999999 9999999999999999877 2 22 3334 89999999999
Q ss_pred cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682 221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~ 275 (330)
+. +++++++|.+|.+ .|.+|+|+|||+.||+++ ++++++|..+ |+.+.++..+
T Consensus 234 d~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 234 DVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp ETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence 76 6899999999999 999999999999999995 8899999874 6777776544
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=7.7e-26 Score=213.24 Aligned_cols=239 Identities=10% Similarity=0.059 Sum_probs=175.8
Q ss_pred CcccCCCcEEEeecccccccceee--cCCCceeEEEeCC-CCCc-----------------Ccceeee---ecCccEEEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFP--SCDSSVRSLALSH-DQKY-----------------SPMMFST---VLDDVCMSL 57 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~--gH~~~V~svafSp-dg~~-----------------~~l~~~~---~~~d~~~~v 57 (330)
|+|+.||+|++|++.+++....+. +|...|.+++|+| +++. ..+.... ++...+..+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 169 (383)
T 3ei3_B 90 AVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCV 169 (383)
T ss_dssp EEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEE
T ss_pred EEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEE
Confidence 578999999999999888777765 7999999999999 5555 1111121 334668888
Q ss_pred EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCC
Q psy682 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNN 135 (330)
Q Consensus 58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~ 135 (330)
+|+|+++.+ ++++.+++|++|+.++..+.+..+|. ..+.++.|+||+. +++++.++.
T Consensus 170 ~~~~~~~~l-----------------~~~~~d~~i~i~d~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~d~~ 228 (383)
T 3ei3_B 170 DVSVSRQML-----------------ATGDSTGRLLLLGLDGHEIFKEKLHK----AKVTHAEFNPRCDWLMATSSVDAT 228 (383)
T ss_dssp EEETTTTEE-----------------EEEETTSEEEEEETTSCEEEEEECSS----SCEEEEEECSSCTTEEEEEETTSE
T ss_pred EECCCCCEE-----------------EEECCCCCEEEEECCCCEEEEeccCC----CcEEEEEECCCCCCEEEEEeCCCE
Confidence 888888864 78888999999999877777777887 4677899999997 554344443
Q ss_pred CCcceeccC---CCCccceeee---eeEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------
Q psy682 136 APVPKRHLG---DNFSQKLRVR---HNCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--------- 199 (330)
Q Consensus 136 ~~~~~~~l~---~~~~~~~~~~---~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--------- 199 (330)
..+|..... ......+ .+ ..+++|+| ||++|+ +++.|++|++ |++.+++..+.+.+|....
T Consensus 229 i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~-~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLL-TTDQRNEIRV-YSSYDWSKPDQIIIHPHRQFQHLTPIKA 305 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEE-EEESSSEEEE-EETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred EEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEE-EEcCCCcEEE-EECCCCccccccccccccccccccceEE
Confidence 333322221 1111112 22 25889999 999955 5568999999 9999999888888775321
Q ss_pred --------E-E--e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 200 --------F-S--S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 200 --------i-a--S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
+ + + --++ +||.||+|+||+. +|+++++|.+|.....+..++|+|||++||+++++.+++|.++.
T Consensus 306 ~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 306 TWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 1 1 1 1122 7899999999986 79999999985422378888999999999999999999999764
No 27
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.9e-26 Score=223.73 Aligned_cols=246 Identities=11% Similarity=0.035 Sum_probs=173.5
Q ss_pred CCcEEEeecccc---cccceeecCCCceeEEEeCCCCCcCcceeee--ecCccEEEEEeCCC----CCeeEeeeccc--e
Q psy682 6 KGIVEVWRTFNL---ALLYAFPSCDSSVRSLALSHDQKYSPMMFST--VLDDVCMSLKFPSN----SPICHVTANTY--V 74 (330)
Q Consensus 6 d~~V~lW~~~~g---~~l~tl~gH~~~V~svafSpdg~~~~l~~~~--~~~d~~~~v~Fs~~----~~v~~~~~~~~--~ 74 (330)
..+|+||+..++ ++++++.+|...|..|+|+||-.- .+-..- .+...+.++.|+|| +++++.+.++. .
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~ 140 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN-LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL 140 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS-CEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc-eeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence 368999999999 899999999999999999998543 221221 44557999999999 99998877654 2
Q ss_pred eccCCcEEEEE--cCCcceEEEeCCCC--CCcccCCCCCCCCCCCCCCccccC---CCc-eeccCCCCCCCcceeccCCC
Q psy682 75 TLHMPSVVTVT--ANHQFAINRWNPDY--AASIQSPSYAETPGSPPGNLPLTL---DPI-LTHPTSNNNAPVPKRHLGDN 146 (330)
Q Consensus 75 ~~~~~~~v~vS--~~~~~tv~lW~~~~--~~~~~~~~h~~~~~~~~~~l~fs~---D~~-l~~~s~~~~~~~~~~~l~~~ 146 (330)
.+ +.+....+ .+.+.+|++|+... ..+....+|+. .+..++|++ |+. +++++.+++.++|....+.
T Consensus 141 ~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk- 214 (356)
T 2w18_A 141 GL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ- 214 (356)
T ss_dssp EE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-
T ss_pred ec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC----ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-
Confidence 34 34555555 34699999999833 33445557763 566789998 566 6654555544444433332
Q ss_pred Cccceeeee------eEEEEecCCCeE-----------EEeeccCCeEEEeeecccccccccc-----cCCCCcEEEe--
Q psy682 147 FSQKLRVRH------NCFVTTVDSRFL-----------LACGFWDNSFREPFTTMYLALQEGK-----FDHPNRLFSS-- 202 (330)
Q Consensus 147 ~~~~~~~~~------~~~~~spDg~~i-----------~asg~~D~tirl~w~~~~g~l~~~l-----~gH~d~ViaS-- 202 (330)
...++.++. .+++|+|||+++ +++|+.|++||+ |+..+|+.+.++ .||.+.++.-
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl-Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV-INPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE-EETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE-EECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 334454332 367899999986 367889999999 999999987765 4887765321
Q ss_pred --HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCc-EEEeCCCccEEEEcc-CCeEEEEee
Q psy682 203 --ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPE-SVVMSREGVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~-~v~fS~dG~~l~s~~-~~~~~~~s~ 264 (330)
...+ |||.|||||||+. +|+++++|++|.+ .|. +|+|||||++||||+ |+++++|..
T Consensus 294 sg~~lA---SgS~DgTIkIWDl~tGk~l~tL~gH~~--~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 KDHCAA---AILTSGTIAIWDLLLGQCTALLPPVSD--QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTEEE---EEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCEEE---EEcCCCcEEEEECCCCcEEEEecCCCC--CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 1223 8999999999976 7999999999988 555 699999999999996 889999964
No 28
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=5.9e-27 Score=218.35 Aligned_cols=213 Identities=11% Similarity=0.058 Sum_probs=156.3
Q ss_pred CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
|||+.|++||||++.+++ ++.+|.+|.+.|++|+|+|+ |++
T Consensus 29 asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~----------------------------------- 73 (316)
T 3bg1_A 29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI----------------------------------- 73 (316)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSC-----------------------------------
T ss_pred EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCE-----------------------------------
Confidence 689999999999998764 57789999999999999873 555
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCCC--c
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDNF--S 148 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~~--~ 148 (330)
++|++.|++|++|+...+. ..+..+|.+ .+.++.|+|| +. +++++.++...++....+... .
T Consensus 74 ------l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 74 ------LASCSYDRKVIIWREENGTWEKSHEHAGHDS----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------EEEEETTSCEEEECCSSSCCCEEEEECCCSS----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred ------EEEEECCCEEEEEECCCCcceEEEEccCCCC----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 4888899999999987542 334568874 6778999998 55 665455544444332211111 1
Q ss_pred cceeee---eeEEEEecC-----------------CCeEEEeeccCCeEEEeeecccc---cccccccCCCCcEE--E--
Q psy682 149 QKLRVR---HNCFVTTVD-----------------SRFLLACGFWDNSFREPFTTMYL---ALQEGKFDHPNRLF--S-- 201 (330)
Q Consensus 149 ~~~~~~---~~~~~~spD-----------------g~~i~asg~~D~tirl~w~~~~g---~l~~~l~gH~d~Vi--a-- 201 (330)
..+..| ..+++|+|+ +++ +++|+.|++||+ |+++.+ +++..+.+|.+.|. +
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~D~~v~l-Wd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR-FASGGCDNLIKL-WKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB-EECCBTTSBCCE-EEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccce-EEEecCCCeEEE-EEeCCCCccceeeecccCCCceEEEEec
Confidence 112222 256778887 356 677789999999 999654 47788999999882 2
Q ss_pred e------HHHHHhhhccCCCcEEEEcccC----c-eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 202 S------ISLAWKNCQRDTSDVKVHTTFG----D-LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 202 S------t~~lW~~SgS~Dgtvkl~~~~G----~-ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
+ ...+ |||.||+|+||+.+. + ..+.+.+|.+ .|++|+|||||++||+++ ++++++|..+
T Consensus 222 p~~~~~~~~la---s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 222 PSIGLPTSTIA---SCSQDGRVFIWTCDDASSNTWSPKLLHKFND--VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCSSCSCCEEE---EEETTCEEEEEECSSTTCCCCBCCEEEECSS--CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCCCceEE---EEcCCCeEEEEEccCccccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 2234 999999999997643 2 2345667777 999999999999999985 8899999864
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=220.71 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=164.7
Q ss_pred cEEEeecccccccceeecCCCceeEEEeCCCCCc---Cc----------c---------------eeeeecCccEEEEEe
Q psy682 8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---SP----------M---------------MFSTVLDDVCMSLKF 59 (330)
Q Consensus 8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---~~----------l---------------~~~~~~~d~~~~v~F 59 (330)
..|.|++....+ ..|...|.+++|||||++ .. + .....++..|..++|
T Consensus 15 ~~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 15 AAREWNLPPNAP----ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp --------CCSC----SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred cccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 357888765332 468888999999999988 00 0 001134567888999
Q ss_pred CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-c----CCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682 60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-Q----SPSYAETPGSPPGNLPLTLDPI-LTHPTSN 133 (330)
Q Consensus 60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~----~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~ 133 (330)
+||+.+ ++++.|++|++|+.+.+... . ..+|. +.+.++.|+||++ +++++.+
T Consensus 91 s~d~~l------------------~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~----~~V~~v~~spdg~~l~sgs~d 148 (344)
T 4gqb_B 91 VGERGI------------------LVASDSGAVELWELDENETLIVSKFCKYEHD----DIVSTVSVLSSGTQAVSGSKD 148 (344)
T ss_dssp ETTTEE------------------EEEETTSEEEEEEECTTSSCEEEEEEEECCS----SCEEEEEECTTSSEEEEEETT
T ss_pred eCCCeE------------------EEEECCCEEEEEeccCCCceeEeeccccCCC----CCEEEEEECCCCCEEEEEeCC
Confidence 998764 67778999999998765422 2 23787 4678899999999 6654555
Q ss_pred CCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcE--E--Ee--
Q psy682 134 NNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRL--F--SS-- 202 (330)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~V--i--aS-- 202 (330)
+...+|....+ ....++.+|. .+++|+||++.++++|+.|++||+ |++.+++....+.. |...+ + .+
T Consensus 149 ~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 149 ICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL-WDTRCPKPASQIGCSAPGYLPTSLAWHPQQ 226 (344)
T ss_dssp SCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEE-EETTSSSCEEECC----CCCEEEEEECSSC
T ss_pred CeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCCceeeecccccccc-ccccccceeeeeecceeeccceeeeecCCC
Confidence 54444433322 2223455554 588999999877888889999999 99999988776643 33333 1 11
Q ss_pred -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEEEEeeCCceeeeccCc-cc
Q psy682 203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMNGNRLRHESHN-DN 277 (330)
Q Consensus 203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~~~s~nG~~las~~~~-~d 277 (330)
.+.+ +|+.||+|+||+. +|+++++|.+|.+ .|++|+||||| ++||+++ |+++++|..+...+.....| +.
T Consensus 227 ~~~l~---sg~~dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~ 301 (344)
T 4gqb_B 227 SEVFV---FGDENGTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDF 301 (344)
T ss_dssp TTEEE---EEETTSEEEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSC
T ss_pred CcceE---EeccCCcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCC
Confidence 3334 8999999999975 7999999999999 99999999998 5788885 88999998876666555544 44
Q ss_pred cccc
Q psy682 278 LQEL 281 (330)
Q Consensus 278 VkEL 281 (330)
|..+
T Consensus 302 V~~v 305 (344)
T 4gqb_B 302 VRDA 305 (344)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.94 E-value=4.8e-26 Score=208.59 Aligned_cols=232 Identities=13% Similarity=0.068 Sum_probs=162.6
Q ss_pred CcccCCCcEEEeecccc-----cccceeecCCCceeEEEeCCCCCcCcceeee----------------------ecCcc
Q psy682 1 MSGGDKGIVEVWRTFNL-----ALLYAFPSCDSSVRSLALSHDQKYSPMMFST----------------------VLDDV 53 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g-----~~l~tl~gH~~~V~svafSpdg~~~~l~~~~----------------------~~~d~ 53 (330)
||||.||+||||++.++ .+..++.+|...|.+++|+|||++ +.+ .+...
T Consensus 55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~----l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 130 (340)
T 4aow_A 55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF----ALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130 (340)
T ss_dssp EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE----EEEEcccccceEEeecccceeeeecCCCCc
Confidence 58999999999998754 356789999999999999999987 323 33334
Q ss_pred EEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc--ccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682 54 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS--IQSPSYAETPGSPPGNLPLTLDPI-LTHP 130 (330)
Q Consensus 54 ~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~--~~~~~h~~~~~~~~~~l~fs~D~~-l~~~ 130 (330)
+....++++++. +++++.|+.+++|+...... ....+|. +.+..+.|++++. ...+
T Consensus 131 ~~~~~~~~~~~~-----------------l~s~s~d~~~~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 131 VLSVAFSSDNRQ-----------------IVSGSRDKTIKLWNTLGVCKYTVQDESHS----EWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEEECTTSSC-----------------EEEEETTSCEEEECTTSCEEEEECSSSCS----SCEEEEEECSCSSSCEEE
T ss_pred eeEEEEeecCcc-----------------ceeecCCCeEEEEEeCCCceEEEEecccc----CcccceEEccCCCCcEEE
Confidence 444445555554 47888899999999865543 3334776 3566788888875 2212
Q ss_pred CCCCCCCcceeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-E-Ee--
Q psy682 131 TSNNNAPVPKRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-F-SS-- 202 (330)
Q Consensus 131 s~~~~~~~~~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS-- 202 (330)
+++.+..+..+.+... ....+..|. .+++|+||+++ +++|+.|++|++ |++.+++.+..+.+|..+. + .+
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i~i-wd~~~~~~~~~~~~~~~v~~~~~~~~ 267 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAML-WDLNEGKHLYTLDGGDIINALCFSPN 267 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTCEEEE-EETTTTEEEEEEECSSCEEEEEECSS
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-EEEEeCCCeEEE-EEeccCceeeeecCCceEEeeecCCC
Confidence 2333333344443221 112233332 57889999998 555668999999 9999999888887776533 1 12
Q ss_pred HHHHHhhhccCCCcEEEEccc-CceeeecC---------CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682 203 ISLAWKNCQRDTSDVKVHTTF-GDLLRSLD---------PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 203 t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~---------~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~ 264 (330)
...+ +++.|++|+||+.+ +.++.++. +|.. .|.+|+|||||+.||+|+ |+.+++|.+
T Consensus 268 ~~~~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 268 RYWL---CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp SSEE---EEEETTEEEEEETTTTEEEEEECCC-------CCCC--CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred Ccee---eccCCCEEEEEECCCCeEEEeccccceeeeccCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 2222 78889999999874 55566554 4666 899999999999999985 889999974
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=1e-25 Score=213.66 Aligned_cols=240 Identities=8% Similarity=-0.022 Sum_probs=174.9
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+++.+..+.+|...|++++|+|||++ ..+..+.+|...|..++|+|+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 57899999999999999999999999999999999999987 223445688899999999999
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCC--------------------CCCCCCCccc
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAET--------------------PGSPPGNLPL 121 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~--------------------~~~~~~~l~f 121 (330)
+..+ ++++.|++|++|+..... +.....|... -...+.++.|
T Consensus 193 ~~~l-----------------~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 193 GRNV-----------------LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp TTEE-----------------EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred CCEE-----------------EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 9875 788889999999987554 3333332211 0246778999
Q ss_pred cCCCc-eeccCCCCCCCcceeccCC--CCcccee---eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc-ccccccC
Q psy682 122 TLDPI-LTHPTSNNNAPVPKRHLGD--NFSQKLR---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-LQEGKFD 194 (330)
Q Consensus 122 s~D~~-l~~~s~~~~~~~~~~~l~~--~~~~~~~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-l~~~l~g 194 (330)
+||+. +++++.++. +..+.+.. ....... ....+++|+||++.++++|+.|++|++ |++.+++ ++..+.+
T Consensus 256 s~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v-wd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGV--ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ-WDLRSPECPVGEFLI 332 (420)
T ss_dssp SCTTEEEEEEETTSC--EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE-EETTCTTSCSEEEEE
T ss_pred cCCCCEEEEEcCCCe--EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE-EEcCCCcCchhhhhc
Confidence 99998 554344433 33444322 1111111 123588999999934667778999999 9998875 4777777
Q ss_pred -CCCcE--EEe---HHHHHhhhccCCCcEEEEcccC----------ceeeecCCCCCCCCCcEEEeCCCcc----EEEEc
Q psy682 195 -HPNRL--FSS---ISLAWKNCQRDTSDVKVHTTFG----------DLLRSLDPPSGFASPESVVMSREGV----IVVNY 254 (330)
Q Consensus 195 -H~d~V--iaS---t~~lW~~SgS~Dgtvkl~~~~G----------~ll~tL~~h~~~~~v~~v~fS~dG~----~l~s~ 254 (330)
|...| +++ ...+ +||.||+|+||+... .....+.+|.+ .|..++|+|||+ +++.|
T Consensus 333 ~~~~~v~~~~~~~~~~l~---s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 333 NEGTPINNVYFAAGALFV---SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD--AVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp STTSCEEEEEEETTEEEE---EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC--CCCEEEEECCSSSSCEEEEEE
T ss_pred cCCCCceEEEeCCCCEEE---EecCCccEEEEeccCCCCCccceeccCccEEccCCc--ceEEEEEccCCCCcceEEEEc
Confidence 45555 222 2333 899999999998643 22334667777 899999999999 88888
Q ss_pred cCCeEEEEeeC
Q psy682 255 ERGHIAAFTMN 265 (330)
Q Consensus 255 ~~~~~~~~s~n 265 (330)
+++.+..|...
T Consensus 408 ~~g~~~~~~~~ 418 (420)
T 3vl1_A 408 KNNFCALYNLS 418 (420)
T ss_dssp TTTEEEEEESC
T ss_pred CCceEEEEecc
Confidence 99999999865
No 32
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-26 Score=235.21 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=164.9
Q ss_pred CcccCCCcEEEeeccccccc----ceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTFNLALL----YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l----~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
|||+.|++||||++.++++. .++.+|.+.|++|+|+|++.. ++++.+
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~------------------~~~~~~----------- 227 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA------------------PHLVGC----------- 227 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCC------------------SSSSCE-----------
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCC------------------CCCCce-----------
Confidence 57899999999999877643 457889999999999997432 233443
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCCc------------ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAAS------------IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG 144 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~~------------~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~ 144 (330)
+||++.|++|++|+.+.+.. .++.+|. ..+.+++|+++..+++++.++...+|....+
T Consensus 228 ------LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~----~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~ 297 (524)
T 2j04_B 228 ------LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD----SLITTFDFLSPTTVVCGFKNGFVAEFDLTDP 297 (524)
T ss_dssp ------EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT----TCEEEEEESSSSEEEEEETTSEEEEEETTBC
T ss_pred ------EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC----CCEEEEEecCCCeEEEEeCCCEEEEEECCCC
Confidence 48888999999999975532 1345776 4677899999888887666665554433322
Q ss_pred CCCccceeeee---eEE--EEecCC-CeEEEeeccCCeEEEeeecccccccccccCCCCc--E----EEe--HHHHHhhh
Q psy682 145 DNFSQKLRVRH---NCF--VTTVDS-RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--L----FSS--ISLAWKNC 210 (330)
Q Consensus 145 ~~~~~~~~~~~---~~~--~~spDg-~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--V----iaS--t~~lW~~S 210 (330)
......+.+|. .++ +++||| ++ +++|+.|++||| |++.+++...++.+|... | +.+ ...+ +
T Consensus 298 ~~~~~~~~~H~~~V~sv~~~~s~~g~~~-laS~S~D~tvkl-WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~---s 372 (524)
T 2j04_B 298 EVPSFYDQVHDSYILSVSTAYSDFEDTV-VSTVAVDGYFYI-FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI---Y 372 (524)
T ss_dssp SSCSEEEECSSSCEEEEEEECCTTSCCE-EEEEETTSEEEE-ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE---E
T ss_pred CCceEEeecccccEEEEEEEcCCCCCeE-EEEeccCCeEEE-EECCCCCcccccccccccCcccceEeCCCcCeEE---E
Confidence 22223355553 355 578998 55 777789999999 999989988888888641 2 222 2223 8
Q ss_pred ccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeee
Q psy682 211 QRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRH 271 (330)
Q Consensus 211 gS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las 271 (330)
|+.|++||||+. +|+.+++|.+|.+ .|++|+|||+|+.||+|+ |+++++|.+.++.+..
T Consensus 373 ~~~d~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~ 433 (524)
T 2j04_B 373 SDGASSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG 433 (524)
T ss_dssp ECSSSEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred eCCCCcEEEEECcccccceeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc
Confidence 999999999975 7899999999999 999999999999999995 8899999988875554
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=2.5e-25 Score=214.53 Aligned_cols=251 Identities=13% Similarity=0.039 Sum_probs=169.4
Q ss_pred ccCCCcEEEeeccccccccee--ecCCCceeEEEeCCCCCcCcceeeeecCcc-EEEEEeCCCCCeeEe-eeccc--eec
Q psy682 3 GGDKGIVEVWRTFNLALLYAF--PSCDSSVRSLALSHDQKYSPMMFSTVLDDV-CMSLKFPSNSPICHV-TANTY--VTL 76 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl--~gH~~~V~svafSpdg~~~~l~~~~~~~d~-~~~v~Fs~~~~v~~~-~~~~~--~~~ 76 (330)
.+.|++|+|||..+|+.+..+ .+|...|++|+|||||++ +..+..|. |....... ++.+.. ..++. ..+
T Consensus 121 vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~----lasgs~Dg~v~iWd~~~-~~~~~~~~~h~~~v~~~ 195 (420)
T 4gga_A 121 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY----LAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSL 195 (420)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE----EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEE
T ss_pred EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE----EEEEECCCeEEEEEcCC-CcEEEEEeCCCCceEEE
Confidence 346899999999999877766 478889999999999998 44433332 22222211 111111 00000 112
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC---ccc
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF---SQK 150 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~---~~~ 150 (330)
..++.++++++.++++++|+..... ..++.+|.. .+..+.+++++. +++++.++...++....+... ...
T Consensus 196 s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~----~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 196 SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred eeCCCEEEEEeCCCceeEeeecccceeeEEeccccc----ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence 2233456899999999999976443 344568864 667899999999 554333333323322211111 111
Q ss_pred eeee---eeEEEEecCCCeEEE--eeccCCeEEEeeecccccccccccCCCCcE--EEe---HHHHHhhhccCCCcEEEE
Q psy682 151 LRVR---HNCFVTTVDSRFLLA--CGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS---ISLAWKNCQRDTSDVKVH 220 (330)
Q Consensus 151 ~~~~---~~~~~~spDg~~i~a--sg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS---t~~lW~~SgS~Dgtvkl~ 220 (330)
...+ ..+++++|++..+++ +|+.|++||+ |++.+|++...+..|...+ ..+ ...+ ..+|+.||+|+||
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i-wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv-~~sg~~d~~I~iw 349 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI-WNVCSGACLSAVDAHSQVCSILWSPHYKELI-SGHGFAQNQLVIW 349 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE-EETTTTEEEEEEECSSCEEEEEEETTTTEEE-EEECTTTCCEEEE
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEE-EeCCccccceeeccccceeeeeecCCCCeEE-EEEecCCCEEEEE
Confidence 1222 257889998877665 4678999999 9999999999998888765 112 1111 0156799999999
Q ss_pred cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682 221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG 266 (330)
+. +|+++++|.||.+ .|.+|+|||||++|||++ |+++++|.+..
T Consensus 350 d~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 350 KYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 75 7999999999999 999999999999999995 88999998653
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.93 E-value=1.5e-25 Score=209.16 Aligned_cols=221 Identities=10% Similarity=0.089 Sum_probs=169.1
Q ss_pred cccceeecCCCceeEEEeCCCC-Cc-----------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682 18 ALLYAFPSCDSSVRSLALSHDQ-KY-----------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTY 73 (330)
Q Consensus 18 ~~l~tl~gH~~~V~svafSpdg-~~-----------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~ 73 (330)
.+..+|.||.+.|++|+|+|++ ++ .++..+.+|...|..+.|+|++..+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l------- 80 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA------- 80 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE-------
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE-------
Confidence 4566899999999999999976 43 0123356888899999999999875
Q ss_pred eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682 74 VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL 151 (330)
Q Consensus 74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~ 151 (330)
+|++.|++|++|+...+. +..+.+|.+ .+.++.|+||+. +++++.++ .+..|.+.+....++
T Consensus 81 ----------~s~s~D~~v~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~D~--~i~vwd~~~~~~~~~ 144 (319)
T 3frx_A 81 ----------LSASWDKTLRLWDVATGETYQRFVGHKS----DVMSVDIDKKASMIISGSRDK--TIKVWTIKGQCLATL 144 (319)
T ss_dssp ----------EEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSCEEEEEETTS--CEEEEETTSCEEEEE
T ss_pred ----------EEEeCCCEEEEEECCCCCeeEEEccCCC----cEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEE
Confidence 888999999999987655 455568974 677899999998 55544444 344555544333334
Q ss_pred eeee---eEEEEecC------CCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHHHhhhccCCCc
Q psy682 152 RVRH---NCFVTTVD------SRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLAWKNCQRDTSD 216 (330)
Q Consensus 152 ~~~~---~~~~~spD------g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgt 216 (330)
..|. .+++++|+ +.+ +++|+.|++||+ |++.++++...+.+|.+.|. + + ...+ +|+.||+
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~-l~s~~~d~~i~~-wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~---s~~~dg~ 219 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVT-IISAGNDKMVKA-WNLNQFQIEADFIGHNSNINTLTASPDGTLIA---SAGKDGE 219 (319)
T ss_dssp CCCSSCEEEEEECCC------CCE-EEEEETTSCEEE-EETTTTEEEEEECCCCSCEEEEEECTTSSEEE---EEETTCE
T ss_pred eccCCcEEEEEEccCCCCCCCccE-EEEEeCCCEEEE-EECCcchhheeecCCCCcEEEEEEcCCCCEEE---EEeCCCe
Confidence 4443 46778885 435 566678999999 99999999999999999882 1 2 3344 8999999
Q ss_pred EEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCcee
Q psy682 217 VKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL 269 (330)
Q Consensus 217 vkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~l 269 (330)
|+||+. +++.++++.++ + .|.+++|||||+.|++++++.+..|+.+...+
T Consensus 220 i~iwd~~~~~~~~~~~~~-~--~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 220 IMLWNLAAKKAMYTLSAQ-D--EVFSLAFSPNRYWLAAATATGIKVFSLDPQYL 270 (319)
T ss_dssp EEEEETTTTEEEEEEECC-S--CEEEEEECSSSSEEEEEETTEEEEEEETTEEE
T ss_pred EEEEECCCCcEEEEecCC-C--cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCee
Confidence 999976 78999999875 4 69999999999999999888888888876544
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=1.1e-25 Score=211.46 Aligned_cols=238 Identities=9% Similarity=0.055 Sum_probs=177.3
Q ss_pred ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682 17 LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 78 (330)
Q Consensus 17 g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~ 78 (330)
.+...+|.||.+.|++++|+|||++ ..+...+.|...+..++|+|+++.+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------ 112 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV------------ 112 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEE------------
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEE------------
Confidence 3556789999999999999999987 1223345777888889999998875
Q ss_pred CcEEEEEcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceee
Q psy682 79 PSVVTVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV 153 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~ 153 (330)
++++.|++|++|+..... ...+.+|.+ .+.++.|++|+++++++.++...+|....+. ...++.+
T Consensus 113 -----~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~ 182 (340)
T 1got_B 113 -----ACGGLDNICSIYNLKTREGNVRVSRELAGHTG----YLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTG 182 (340)
T ss_dssp -----EEEETTCEEEEEETTTCSBSCEEEEEEECCSS----CEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECC
T ss_pred -----EEEeCCCeEEEEECccCCCcceeEEEecCCCc----cEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcC
Confidence 788889999999986542 234458874 5678999999998875555544444322221 1223443
Q ss_pred ee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-c
Q psy682 154 RH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-F 223 (330)
Q Consensus 154 ~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~ 223 (330)
|. .+++|+||+++ +++|+.|++||+ |++.+++..+++.+|.+.|. .+ ...+ +||.||+|+||+. +
T Consensus 183 h~~~v~~~~~~~~~~~-l~sg~~d~~v~~-wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~---s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 183 HTGDVMSLSLAPDTRL-FVSGACDASAKL-WDVREGMCRQTFTGHESDINAICFFPNGNAFA---TGSDDATCRLFDLRA 257 (340)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCSEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEEEETTT
T ss_pred CCCceEEEEECCCCCE-EEEEeCCCcEEE-EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE---EEcCCCcEEEEECCC
Confidence 43 58889999998 556678999999 99999999999999999882 22 3333 8999999999986 6
Q ss_pred CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc-cccccc
Q psy682 224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN-DNLQEL 281 (330)
Q Consensus 224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~-~dVkEL 281 (330)
++.+.++..+.....|.+|+|||+|++|++++ ++.+.+|.. +++.+..+..| +.|.++
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 318 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence 78888876543223799999999999999995 888999975 67777777644 345444
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.7e-26 Score=216.36 Aligned_cols=213 Identities=12% Similarity=0.038 Sum_probs=159.8
Q ss_pred CcccCCCcEEEeecccc--cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682 1 MSGGDKGIVEVWRTFNL--ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 78 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g--~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~ 78 (330)
|+|+.||+|++|++.++ +.+.++.+|...|++++|+|||++
T Consensus 27 ~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~------------------------------------- 69 (377)
T 3dwl_C 27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR------------------------------------- 69 (377)
T ss_dssp ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCC-------------------------------------
T ss_pred EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCE-------------------------------------
Confidence 57889999999999988 889999999999999999999887
Q ss_pred CcEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC--Cccce
Q psy682 79 PSVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN--FSQKL 151 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~--~~~~~ 151 (330)
+++++.|++|++|+.+... .....+|. ..+.++.|+||+. +++++.++...++....+.. ..+.+
T Consensus 70 ----l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 70 ----IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN----RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp ----EEEEETTSSEEEC------CCCCEEECCCCS----SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred ----EEEEeCCCeEEEEEcCCCCceeeeeEecccC----CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence 4788889999999997665 45556786 4677899999998 66544444433332222221 12333
Q ss_pred ee-e---eeEEEEecCCCeEEEeeccCCeEEEeeecc------------------cccccccccCCCCcEE--E-e---H
Q psy682 152 RV-R---HNCFVTTVDSRFLLACGFWDNSFREPFTTM------------------YLALQEGKFDHPNRLF--S-S---I 203 (330)
Q Consensus 152 ~~-~---~~~~~~spDg~~i~asg~~D~tirl~w~~~------------------~g~l~~~l~gH~d~Vi--a-S---t 203 (330)
.. | ..+++|+||+++ +++|+.|++|++ |++. .++++..+ +|.+.|. + + .
T Consensus 142 ~~~h~~~v~~~~~~~~~~~-l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVL-LAAGCADRKAYV-LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp CSSCCSCEEEEEECTTSSE-EEEEESSSCEEE-EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred ecccCCCeEEEEEcCCCCE-EEEEeCCCEEEE-EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence 33 3 368899999998 555668999999 9984 46777777 9999882 1 2 3
Q ss_pred HHHHhhhccCCCcEEEEcc-cCce----eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 204 SLAWKNCQRDTSDVKVHTT-FGDL----LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 204 ~~lW~~SgS~Dgtvkl~~~-~G~l----l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
..+ +|+.||+|+||+. +|+. ++++.+|.. .|.+++|+|||++|++++++.++.|..+.
T Consensus 219 ~l~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 219 ALA---YAGHDSSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp CEE---EEETTTEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred EEE---EEeCCCcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 333 8999999999976 5776 899999998 99999999999999999988888887763
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=6.4e-26 Score=215.76 Aligned_cols=245 Identities=11% Similarity=0.066 Sum_probs=158.7
Q ss_pred cCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc---Cc-------------------------ceeeeecCccEE
Q psy682 4 GDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---SP-------------------------MMFSTVLDDVCM 55 (330)
Q Consensus 4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---~~-------------------------l~~~~~~~d~~~ 55 (330)
+.+...+.|++... ...+|...|++|+|||||++ .. .....+|++.|.
T Consensus 23 ~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~ 98 (357)
T 4g56_B 23 NGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT 98 (357)
T ss_dssp ---------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE
T ss_pred CCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE
Confidence 33455677766432 23689999999999999998 00 011236777888
Q ss_pred EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eec
Q psy682 56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTH 129 (330)
Q Consensus 56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~ 129 (330)
.++|+|++.+ ++++.+++|++|+...+... ...+|. +.+.++.|+||++ +++
T Consensus 99 ~~~~s~d~~~------------------l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~----~~V~~v~~spdg~~l~s 156 (357)
T 4g56_B 99 DVAWVSEKGI------------------LVASDSGAVELWEILEKESLLVNKFAKYEHD----DIVKTLSVFSDGTQAVS 156 (357)
T ss_dssp EEEEETTTEE------------------EEEETTSCEEEC--------CCCCEEECCCS----SCEEEEEECSSSSEEEE
T ss_pred EEEEcCCCCE------------------EEEECCCEEEEeeccccceeEEEeeccCCCC----CCEEEEEECCCCCEEEE
Confidence 8999998875 33456789999998654321 223776 4677899999999 665
Q ss_pred cCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE--EE-
Q psy682 130 PTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL--FS- 201 (330)
Q Consensus 130 ~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V--ia- 201 (330)
++.++...+|....+. ....+..|. .+++|+|+++.++++++.|++||+ |++.+++....+. .|...| ++
T Consensus 157 gs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~-wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 157 GGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL-WDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE-CCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred EeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE-EECCCCceeeeeeeccccccccchhh
Confidence 4444443333222111 222344443 588999999866777779999999 9999888766554 344444 21
Q ss_pred e----HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEEEEeeC-Cceeeecc
Q psy682 202 S----ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMN-GNRLRHES 273 (330)
Q Consensus 202 S----t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~~~s~n-G~~las~~ 273 (330)
+ .+.+ +|+.|++|+||+. +|++++++.+|.+ .|++|+|||+| ++||+++ ++++++|..+ |+.+..+.
T Consensus 235 sp~~~~~la---~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~ 309 (357)
T 4g56_B 235 HPEKDDTFA---CGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS 309 (357)
T ss_dssp CTTSTTEEE---EEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC
T ss_pred hhcccceEE---EeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC
Confidence 1 3333 8999999999975 7999999999999 99999999998 5788885 7899999876 55555555
Q ss_pred Cccccccc
Q psy682 274 HNDNLQEL 281 (330)
Q Consensus 274 ~~~dVkEL 281 (330)
+.+.|..+
T Consensus 310 H~~~V~~v 317 (357)
T 4g56_B 310 HRDFVTGV 317 (357)
T ss_dssp CSSCEEEE
T ss_pred CCCCEEEE
Confidence 55666665
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=1.4e-25 Score=230.19 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=173.4
Q ss_pred CcccCCCcEEEeecccc-----cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682 1 MSGGDKGIVEVWRTFNL-----ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL 57 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g-----~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v 57 (330)
||||.||+||||++.++ ....++.+|...|++|+|||||++ .....+.+|.+.|.++
T Consensus 399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 58999999999998753 345679999999999999999987 1223356899999999
Q ss_pred EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC----CCCCCCCCCCCCCccccCCCc---eecc
Q psy682 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS----PSYAETPGSPPGNLPLTLDPI---LTHP 130 (330)
Q Consensus 58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~----~~h~~~~~~~~~~l~fs~D~~---l~~~ 130 (330)
.|+|++..+ +|++.|++|++|+..+...... .+|. +.+.++.|+||+. ++++
T Consensus 479 ~~s~~~~~l-----------------~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 479 AFSLDNRQI-----------------VSASRDRTIKLWNTLGECKYTISEGGEGHR----DWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp EECTTSSCE-----------------EEEETTSCEEEECTTSCEEEEECSSTTSCS----SCEEEEEECSCSSSCEEEEE
T ss_pred EEeCCCCEE-----------------EEEeCCCEEEEEECCCCcceeeccCCCCCC----CcEEEEEEeCCCCcceEEEE
Confidence 999999975 8888999999999865432222 3565 4678899999973 5654
Q ss_pred CCCCCCCcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEe-
Q psy682 131 TSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSS- 202 (330)
Q Consensus 131 s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS- 202 (330)
+.++. +..|.+.. ....++..|. .+++|+|||++ +++|+.|++||+ |++.+++.+..+..+.... +.+
T Consensus 538 s~d~~--v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~~Dg~i~i-wd~~~~~~~~~~~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 538 SWDKT--VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVLL-WDLAEGKKLYSLEANSVIHALCFSPN 613 (694)
T ss_dssp ETTSC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSBCEE-EETTTTEEEECCBCSSCEEEEEECSS
T ss_pred eCCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEE-EECCCCceEEEecCCCcEEEEEEcCC
Confidence 44444 44444422 2223344443 58899999998 555668999999 9999999888877665422 111
Q ss_pred HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC-----------------CCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682 203 ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF-----------------ASPESVVMSREGVIVVNYE-RGHIAAFT 263 (330)
Q Consensus 203 t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~-----------------~~v~~v~fS~dG~~l~s~~-~~~~~~~s 263 (330)
...+ +++.|+.|+||+. ++++++++..+... ..+.+++|||||+.|++++ ++.+++|.
T Consensus 614 ~~~l---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 614 RYWL---CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp SSEE---EEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CcEE---EEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 1112 5667888999976 68888888754220 1367899999999999995 88999998
Q ss_pred eC
Q psy682 264 MN 265 (330)
Q Consensus 264 ~n 265 (330)
+.
T Consensus 691 i~ 692 (694)
T 3dm0_A 691 IG 692 (694)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=205.46 Aligned_cols=235 Identities=13% Similarity=0.083 Sum_probs=175.3
Q ss_pred cCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCc----------------C------cceeeeecCccEEEEE
Q psy682 4 GDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKY----------------S------PMMFSTVLDDVCMSLK 58 (330)
Q Consensus 4 s~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~----------------~------~l~~~~~~~d~~~~v~ 58 (330)
+.|++|++|++.+++ .+..+ .|...|.+++|+|||++ . .+....+|...|..++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 899999999998875 44444 69999999999999988 1 1222346777788888
Q ss_pred eCCC-CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC------c----ccCCCCCCCCCCCCCCccccCC-Cc
Q psy682 59 FPSN-SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA------S----IQSPSYAETPGSPPGNLPLTLD-PI 126 (330)
Q Consensus 59 Fs~~-~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~------~----~~~~~h~~~~~~~~~~l~fs~D-~~ 126 (330)
|+|+ +.+ +++++.|++|++|+..... . ....+|. ..+.++.|+|| +.
T Consensus 121 ~~~~~~~~-----------------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~ 179 (416)
T 2pm9_A 121 FNAKQDNV-----------------LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV----DEVISLAWNQSLAH 179 (416)
T ss_dssp ECSSSTTB-----------------EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS----CCCCEEEECSSCTT
T ss_pred EcCCCCCE-----------------EEEEcCCCeEEEEECCCCccccccccccccccccCCC----CCeeEEEeCCCCCc
Confidence 8887 665 4888899999999997654 1 1224565 46788999999 55
Q ss_pred -eeccCCCCCCCcceeccCCC-Ccccee---------eeeeEEEEecCCCeEEEeeccCC---eEEEeeecccc-ccccc
Q psy682 127 -LTHPTSNNNAPVPKRHLGDN-FSQKLR---------VRHNCFVTTVDSRFLLACGFWDN---SFREPFTTMYL-ALQEG 191 (330)
Q Consensus 127 -l~~~s~~~~~~~~~~~l~~~-~~~~~~---------~~~~~~~~spDg~~i~asg~~D~---tirl~w~~~~g-~l~~~ 191 (330)
+++++.++. +..+.+... ....+. ....+++|+||++.++++++.|+ +|++ |++.++ +.+..
T Consensus 180 ~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~-~d~~~~~~~~~~ 256 (416)
T 2pm9_A 180 VFASAGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI-WDLRNANTPLQT 256 (416)
T ss_dssp EEEEESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE-EETTSTTSCSBC
T ss_pred EEEEEcCCCC--EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE-EeCCCCCCCcEE
Confidence 555344443 334443221 111222 22368899999865577777898 9999 999886 67888
Q ss_pred cc-CCCCcEE----Ee---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEE
Q psy682 192 KF-DHPNRLF----SS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIA 260 (330)
Q Consensus 192 l~-gH~d~Vi----aS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~ 260 (330)
+. +|...|. .+ ...+ +|+.||+|+||+. +|+.++++.+|.+ .|.+++|+||| ++|++++ ++.++
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~---s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLL---SSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEE---EEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred eecCccCceeEEEeCCCCCCeEE---EEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEECCCCCCEEEEEecCCcEE
Confidence 88 9998882 21 3333 8999999999975 7999999999998 99999999999 8999985 88999
Q ss_pred EEeeCCce
Q psy682 261 AFTMNGNR 268 (330)
Q Consensus 261 ~~s~nG~~ 268 (330)
+|.++...
T Consensus 332 iw~~~~~~ 339 (416)
T 2pm9_A 332 VQTLQNLT 339 (416)
T ss_dssp EEESCCCC
T ss_pred EEEccCCC
Confidence 99987543
No 40
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-25 Score=227.36 Aligned_cols=240 Identities=11% Similarity=0.049 Sum_probs=157.2
Q ss_pred CcccCCCcEEEeecccccc-----------cceeecCCCceeEEEeCCCCCc------------------CcceeeeecC
Q psy682 1 MSGGDKGIVEVWRTFNLAL-----------LYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLD 51 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~-----------l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~ 51 (330)
|||+.||+||||++.+++. ..++.+|...|++++|+|++.+ .+...+.+|+
T Consensus 229 As~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~ 308 (524)
T 2j04_B 229 SFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD 308 (524)
T ss_dssp EEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSS
T ss_pred EEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeeccc
Confidence 5789999999999987642 3478999999999999997655 1233466888
Q ss_pred ccEEEE--EeCCCC-CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-
Q psy682 52 DVCMSL--KFPSNS-PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI- 126 (330)
Q Consensus 52 d~~~~v--~Fs~~~-~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~- 126 (330)
+.|.+| .|+|++ .+ +||++.|++||+|+..... +.+..+|... ..+.++.|+||++
T Consensus 309 ~~V~sv~~~~s~~g~~~-----------------laS~S~D~tvklWD~~~~~~~~~~~~~~~~--~~v~~v~fsp~~~~ 369 (524)
T 2j04_B 309 SYILSVSTAYSDFEDTV-----------------VSTVAVDGYFYIFNPKDIATTKTTVSRFRG--SNLVPVVYCPQIYS 369 (524)
T ss_dssp SCEEEEEEECCTTSCCE-----------------EEEEETTSEEEEECGGGHHHHCEEEEECSC--CSCCCEEEETTTTE
T ss_pred ccEEEEEEEcCCCCCeE-----------------EEEeccCCeEEEEECCCCCccccccccccc--CcccceEeCCCcCe
Confidence 888888 678887 65 4899999999999986433 2333456421 1367899999998
Q ss_pred eeccCCCCCCCcceeccCCCC-ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe
Q psy682 127 LTHPTSNNNAPVPKRHLGDNF-SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS 202 (330)
Q Consensus 127 l~~~s~~~~~~~~~~~l~~~~-~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS 202 (330)
+++++. +..+..|.+.... ..++.+|. .+++|||||++ +++|+.|++||+ |+.. +++++++.++... ..
T Consensus 370 l~s~~~--d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~l-wd~~-~~~~~~~~~~~~~--~~ 442 (524)
T 2j04_B 370 YIYSDG--ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLII-TNAA-RRLLHGIKNSSAT--QK 442 (524)
T ss_dssp EEEECS--SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEEC-CBSC-SSTTTCC--------CC
T ss_pred EEEeCC--CCcEEEEECcccccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEE-Eech-HhhccccccCccc--ee
Confidence 554333 3334444443221 23455554 68999999998 556778999999 9996 4555443322110 01
Q ss_pred HHHHHhhhccCCCc-EEEEc--------ccCceeeecCCCCCCCCCcEEEeCCCc---cEEEEcc-CCeEEEEeeCCce
Q psy682 203 ISLAWKNCQRDTSD-VKVHT--------TFGDLLRSLDPPSGFASPESVVMSREG---VIVVNYE-RGHIAAFTMNGNR 268 (330)
Q Consensus 203 t~~lW~~SgS~Dgt-vkl~~--------~~G~ll~tL~~h~~~~~v~~v~fS~dG---~~l~s~~-~~~~~~~s~nG~~ 268 (330)
+..+|.+.-|.||. +++|. .+|+++.+|.+|.+ .|++|+|||+| ++||+|+ ++.+++|.++|.+
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~--~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI--NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCC--SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc--eEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 12334444555543 44443 36999999999999 99999999995 4999996 6999999999864
No 41
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2.1e-25 Score=214.53 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=142.0
Q ss_pred CcccCCCcEEEeeccccc-----ccceeecCCCceeEEEeCC--------CCCc------------------Ccceeeee
Q psy682 1 MSGGDKGIVEVWRTFNLA-----LLYAFPSCDSSVRSLALSH--------DQKY------------------SPMMFSTV 49 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~-----~l~tl~gH~~~V~svafSp--------dg~~------------------~~l~~~~~ 49 (330)
|+|+.|++||||++.+++ .+.++.||.++|++|+|+| ||++ .+.....+
T Consensus 105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~ 184 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP 184 (393)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC
Confidence 589999999999998774 3456899999999999998 7776 12222346
Q ss_pred cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCcee
Q psy682 50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILT 128 (330)
Q Consensus 50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~l~ 128 (330)
|...+++++|+|+++- .+++++.|++|++|+...+..... .++.. ......+++++...
T Consensus 185 ~~~~v~~v~~~p~~~~----------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~----~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 185 LSSPGISVQFRPSNPN----------------QLIVGERNGNIRIFDWTLNLSAEENSQTEL----VKNPWLLTLNTLPL 244 (393)
T ss_dssp CSSCEEEEEEETTEEE----------------EEEEEETTSEEEEEETTCCC--------------CSCCCSEEEESGGG
T ss_pred CCCCcEEEEECCCCCc----------------eEEecCCCCEEEEEECCCCcccccccccCC----cccceEEecccccc
Confidence 6667777888877653 358899999999999865543222 22321 11122222222211
Q ss_pred ccCCCCCCCcceeccCCCCccceeeeeeEEEEe-cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE-------
Q psy682 129 HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT-VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF------- 200 (330)
Q Consensus 129 ~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s-pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi------- 200 (330)
. ......++. ....+++++ |||+.| ++++.|+++++ |++.+++....+.+|...+-
T Consensus 245 ~---------~~~~~~~~~-----~~v~~v~~~~~dg~~l-~s~s~d~~i~v-wd~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 245 V---------NTCHSSGIA-----SSLANVRWIGSDGSGI-LAMCKSGAWLR-WNLFANNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp C---------------CCS-----SSCSEEEEETTTTCEE-EEECTTSEEEE-EEC-------------------CCSCS
T ss_pred e---------eeeeccccc-----ccceeeeeecCCCCEE-EEEeCCCCEEE-EECccCCCCceEeeecCccccEEEccc
Confidence 0 000000110 112466665 899985 55668999999 99998988888888876650
Q ss_pred ----Ee-----H-------HHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682 201 ----SS-----I-------SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFT 263 (330)
Q Consensus 201 ----aS-----t-------~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s 263 (330)
.. . -..+-.+||.||+|+||+. +|+.+.++.+|.. +|++|+|||||+.||+++++.+.+|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 00 0 0011128999999999975 7999999999988 99999999999999999999898887
Q ss_pred eCC
Q psy682 264 MNG 266 (330)
Q Consensus 264 ~nG 266 (330)
..|
T Consensus 387 L~g 389 (393)
T 4gq1_A 387 LMG 389 (393)
T ss_dssp EGG
T ss_pred EeC
Confidence 665
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=8.1e-25 Score=208.90 Aligned_cols=238 Identities=10% Similarity=0.054 Sum_probs=171.5
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEe
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHV 68 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~ 68 (330)
.++..|+..+.....+|.||.+.|++|+|||||++ ..+....+|...|+.++|+|+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-- 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-- 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE--
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE--
Confidence 45567888788888999999999999999999987 1122345677777788888888864
Q ss_pred eeccceeccCCcEEEEEcCCcceEEEeCCCCC--------CcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCc
Q psy682 69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYA--------ASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPV 138 (330)
Q Consensus 69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~--------~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~ 138 (330)
|+++.|++|++|+.... ....+.||.+ .+.++.|.|+.. +++++.++..
T Consensus 124 ---------------as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~----~v~~~~~~~~~~~~l~s~s~D~~i-- 182 (380)
T 3iz6_a 124 ---------------ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG----YASSCQYVPDQETRLITGSGDQTC-- 182 (380)
T ss_dssp ---------------EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS----CCCCCBCCSSSSSCEEEECTTSCE--
T ss_pred ---------------EEeeCCCcEEEEECCCCccccCCccceeeccCCCc----ceEEEEEecCCCCEEEEECCCCcE--
Confidence 89999999999997532 2344568874 566789999753 6664444444
Q ss_pred ceeccCCCC-ccce-----eee---eeEEEEec-CCCeEEEeeccCCeEEEeeecc-cccccccccCCCCcE--E--Ee-
Q psy682 139 PKRHLGDNF-SQKL-----RVR---HNCFVTTV-DSRFLLACGFWDNSFREPFTTM-YLALQEGKFDHPNRL--F--SS- 202 (330)
Q Consensus 139 ~~~~l~~~~-~~~~-----~~~---~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~-~g~l~~~l~gH~d~V--i--aS- 202 (330)
..|.+...- ...+ .+| ..++++++ ++++ +++|+.|++||+ |++. .++.++.+.+|.+.| + .+
T Consensus 183 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~sgs~D~~v~~-wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM-FISGSCDTTVRL-WDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp EEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE-EEEEETTSCEEE-EETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred EEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE-EEEEECCCeEEE-EECCCCCcceEEECCcCCCeEEEEEecC
Confidence 344432110 0001 122 24667766 7777 666778999999 9986 467888999999987 2 22
Q ss_pred -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC-----CCCcEEEeCCCccEEEEc-cCCeEEEEee-CCceeeec
Q psy682 203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF-----ASPESVVMSREGVIVVNY-ERGHIAAFTM-NGNRLRHE 272 (330)
Q Consensus 203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~-----~~v~~v~fS~dG~~l~s~-~~~~~~~~s~-nG~~las~ 272 (330)
...+ +||.||+|+||+. +|+.++++..+... ..|.+++|||+|++|++| +++.+++|.. .|+.+..+
T Consensus 261 ~~~l~---s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 261 GQRFG---TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp SSEEE---EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCeEE---EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 3333 8999999999975 78999988775431 248999999999999999 4888999975 45555444
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.2e-25 Score=206.43 Aligned_cols=245 Identities=13% Similarity=0.060 Sum_probs=175.3
Q ss_pred CcccCCCcEEEeec----cccc------ccceeec----------CCCceeEEEeCCCCCc-----------------Cc
Q psy682 1 MSGGDKGIVEVWRT----FNLA------LLYAFPS----------CDSSVRSLALSHDQKY-----------------SP 43 (330)
Q Consensus 1 asgs~d~~V~lW~~----~~g~------~l~tl~g----------H~~~V~svafSpdg~~-----------------~~ 43 (330)
|+|+.||+|++|++ .+|+ ....+.. |.+.|.+++|+|||++ ..
T Consensus 62 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 141 (425)
T 1r5m_A 62 AYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGAL 141 (425)
T ss_dssp EEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred EEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 57889999999999 8888 4555555 7999999999999987 11
Q ss_pred ceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCC----------
Q psy682 44 MMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETP---------- 112 (330)
Q Consensus 44 l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~---------- 112 (330)
+....+|...+..+.|+|+++.+ ++++.+++|++|+..... +.....|....
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l-----------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 142 LNVLNFHRAPIVSVKWNKDGTHI-----------------ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp EEEECCCCSCEEEEEECTTSSEE-----------------EEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred eeeccCCCccEEEEEECCCCCEE-----------------EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 22344677888888888888864 677788999999996554 33333443210
Q ss_pred -CCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682 113 -GSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA 187 (330)
Q Consensus 113 -~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~ 187 (330)
...+.++.|++|+.+++++.++.. ..+.+.. .....+..+ ..+++++||+++| ++++.|++|++ |++.+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~g~i--~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i-~d~~~~~ 280 (425)
T 1r5m_A 205 DGSLGVDVEWVDDDKFVIPGPKGAI--FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL-LSASDDGTLRI-WHGGNGN 280 (425)
T ss_dssp -CCCBSCCEEEETTEEEEECGGGCE--EEEETTCSSCSEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEE-ECSSSBS
T ss_pred CcceeeEEEEcCCCEEEEEcCCCeE--EEEEcCCCceeeeeccCCCceEEEEECCCCCEE-EEEcCCCEEEE-EECCCCc
Confidence 001778999999998765544433 3333322 111223223 2578899999984 55568999999 9999999
Q ss_pred ccccccCCCCcE----------EEe-----HHHHHhh-----------------------------hccCCCcEEEEcc-
Q psy682 188 LQEGKFDHPNRL----------FSS-----ISLAWKN-----------------------------CQRDTSDVKVHTT- 222 (330)
Q Consensus 188 l~~~l~gH~d~V----------iaS-----t~~lW~~-----------------------------SgS~Dgtvkl~~~- 222 (330)
....+.+|...| +++ ++++|+. +|+.||+|++|+.
T Consensus 281 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 281 SQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred cceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 999999998877 222 6777776 8889999999976
Q ss_pred cCc--------------------eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682 223 FGD--------------------LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG 266 (330)
Q Consensus 223 ~G~--------------------ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG 266 (330)
+++ +++++.+|.....|.+++|+|||+.||++ .++.+++|.++|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp HHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 567 89999998552279999999999999888 488899999876
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.9e-25 Score=200.62 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=173.3
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc---------------------CcceeeeecCccEEEEEe
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---------------------SPMMFSTVLDDVCMSLKF 59 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---------------------~~l~~~~~~~d~~~~v~F 59 (330)
|+|+.||+|++|++.+++....+.+|...|.+++|+|++++ .++....+|...+..+.|
T Consensus 33 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (313)
T 3odt_A 33 ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF 112 (313)
T ss_dssp EEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred EEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence 57899999999999999999999999999999999999987 011122344444555555
Q ss_pred CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCC
Q psy682 60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAP 137 (330)
Q Consensus 60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~ 137 (330)
++. .+++++.+++|++|+ .+.......+|. ..+.++.+.+ |+. +++++.++.
T Consensus 113 --~~~-----------------~l~~~~~d~~i~~~d-~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d~~-- 166 (313)
T 3odt_A 113 --QDG-----------------VVISGSWDKTAKVWK-EGSLVYNLQAHN----ASVWDAKVVSFSENKFLTASADKT-- 166 (313)
T ss_dssp --ETT-----------------EEEEEETTSEEEEEE-TTEEEEEEECCS----SCEEEEEEEETTTTEEEEEETTSC--
T ss_pred --cCC-----------------EEEEEeCCCCEEEEc-CCcEEEecccCC----CceeEEEEccCCCCEEEEEECCCC--
Confidence 233 347888899999999 455555556776 3566788887 777 555344333
Q ss_pred cceeccCCCCccceee----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e--HHHHHh
Q psy682 138 VPKRHLGDNFSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S--ISLAWK 208 (330)
Q Consensus 138 ~~~~~l~~~~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S--t~~lW~ 208 (330)
+..+..... ...+.. ...+++++|+++ +++|+.|++|++ |++.+++++..+.+|...|. + + -..+
T Consensus 167 i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~-- 240 (313)
T 3odt_A 167 IKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKL-VDMHTGDVLRTYEGHESFVYCIKLLPNGDIV-- 240 (313)
T ss_dssp EEEEETTEE-EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEE-EETTTCCEEEEEECCSSCEEEEEECTTSCEE--
T ss_pred EEEEecCce-EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEE-EECCchhhhhhhhcCCceEEEEEEecCCCEE--
Confidence 334443221 122222 235888999998 445568999999 99999999999999999882 1 2 2222
Q ss_pred hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCce
Q psy682 209 NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR 268 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~ 268 (330)
+|+.||+|++|+. +|++++++.+|.+ .|.+++|+|||++++.+.++.++.|.++...
T Consensus 241 -~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 241 -SCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp -EEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred -EEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 8999999999975 8999999999988 9999999999998887789999999977543
No 45
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-25 Score=230.77 Aligned_cols=235 Identities=7% Similarity=-0.104 Sum_probs=168.5
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcc--------eeee-ecCccEEEEEeCCCCCeeEeeec
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPM--------MFST-VLDDVCMSLKFPSNSPICHVTAN 71 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l--------~~~~-~~~d~~~~v~Fs~~~~v~~~~~~ 71 (330)
||||.|+||| + ++...+++||...|++|+|||||..+.. ..++ .+++.|+.++|||||+.+
T Consensus 31 ASas~D~TV~--d---~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~L----- 100 (588)
T 2j04_A 31 LTTFPDISIG--Q---PKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWM----- 100 (588)
T ss_dssp EECSSSEEEE--E---ECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCE-----
T ss_pred EEEcCCceee--c---ccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEE-----
Confidence 6899999999 4 6666778999999999999999966111 1122 558899999999999986
Q ss_pred cceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCC-CCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC--
Q psy682 72 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAET-PGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF-- 147 (330)
Q Consensus 72 ~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~-~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~-- 147 (330)
|+++.+++|++|+.++ .+.+.. |... ....+.+++|||||+ +++++.++...+| .+.+..
T Consensus 101 ------------As~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW--d~~~~~l~ 164 (588)
T 2j04_A 101 ------------AVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF--SIRKNSEN 164 (588)
T ss_dssp ------------EEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE--ECCCCTTT
T ss_pred ------------EEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE--ECCCCccc
Confidence 7888899999999755 344434 4421 112467899999999 6664555544444 433221
Q ss_pred ------ccce----e---eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc---ccc-cCCCCcE----EEeHHHH
Q psy682 148 ------SQKL----R---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ---EGK-FDHPNRL----FSSISLA 206 (330)
Q Consensus 148 ------~~~~----~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~---~~l-~gH~d~V----iaSt~~l 206 (330)
.+++ . ....+++|+||| +++++ .|+++|+ |+++++++. +++ .+|.+.| +.....+
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrl-Wd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LA 240 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFS-MTVSASSHQPVSRMIQNASRRKITDLKIVDYKVV 240 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEE-ECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEE-EECCCCccccceeeecccccCcEEEEEEECCEEE
Confidence 1223 1 134689999999 45554 6999999 999866632 356 4888777 2223333
Q ss_pred HhhhccCCCcEEEEcccCceeeecC-CCCCCCCCcEEEe--CCCccEEEEcc-CCeEEE-------EeeCCceeeec
Q psy682 207 WKNCQRDTSDVKVHTTFGDLLRSLD-PPSGFASPESVVM--SREGVIVVNYE-RGHIAA-------FTMNGNRLRHE 272 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~~~G~ll~tL~-~h~~~~~v~~v~f--S~dG~~l~s~~-~~~~~~-------~s~nG~~las~ 272 (330)
+++ ||+|+||+..|+.+.++. ||.+ .|+.|+| ||||+.|++++ +|. ++ |++||..+++.
T Consensus 241 ---Sa~-~~tIkLWd~~~~~~~~~~~gh~~--~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~ 310 (588)
T 2j04_A 241 ---LTC-PGYVHKIDLKNYSISSLKTGSLE--NFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL 310 (588)
T ss_dssp ---EEC-SSEEEEEETTTTEEEEEECSCCS--CCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred ---EEe-CCeEEEEECCCCeEEEEEcCCCc--eEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence 676 799999998777665544 8988 9999999 99999999996 555 33 46777777665
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=7.6e-25 Score=211.54 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=171.9
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeC--C
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFP--S 61 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs--~ 61 (330)
|+|+.||+|++|++.+++.+.++.+|.+.|++++|+|++.+ ..+..+.+|.+.|..+.|+ +
T Consensus 136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS
T ss_pred EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC
Confidence 57999999999999999999999999999999999999844 1122233566666666665 3
Q ss_pred CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc------------------------ccCCCCCCCCCCCCC
Q psy682 62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS------------------------IQSPSYAETPGSPPG 117 (330)
Q Consensus 62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~------------------------~~~~~h~~~~~~~~~ 117 (330)
+++. +++++.|++|++|+...... ....+|.. .+
T Consensus 216 ~~~~-----------------l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v- 273 (464)
T 3v7d_B 216 NIKY-----------------IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA----SV- 273 (464)
T ss_dssp SCEE-----------------EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS----CE-
T ss_pred CCCE-----------------EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc----eE-
Confidence 4444 58888999999999876542 23345543 22
Q ss_pred CccccCCCc-eeccCCCCCCCcceeccCC-CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682 118 NLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK 192 (330)
Q Consensus 118 ~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l 192 (330)
..+++|+. +++++.++. +..+.+.. .....+..+ ..+++++||+++ +++|+.|++|++ |++.+|+++..+
T Consensus 274 -~~~~~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~v-wd~~~~~~~~~~ 348 (464)
T 3v7d_B 274 -RTVSGHGNIVVSGSYDNT--LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRI-WDLENGELMYTL 348 (464)
T ss_dssp -EEEEEETTEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEE-EETTTTEEEEEE
T ss_pred -EEEcCCCCEEEEEeCCCe--EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEE-EECCCCcEEEEE
Confidence 23467777 555444443 33343321 111223333 257889999999 455668999999 999999999999
Q ss_pred cCCCCcEE--E-e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CC
Q psy682 193 FDHPNRLF--S-S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NG 266 (330)
Q Consensus 193 ~gH~d~Vi--a-S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG 266 (330)
.+|...|. + + ...+ +|+.||+|++|+. +++....+. |.. .+..++|+|+|++|++++++.+.+|.. +|
T Consensus 349 ~~h~~~v~~~~~~~~~l~---s~s~dg~v~vwd~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g 422 (464)
T 3v7d_B 349 QGHTALVGLLRLSDKFLV---SAAADGSIRGWDANDYSRKFSYH-HTN--LSAITTFYVSDNILVSGSENQFNIYNLRSG 422 (464)
T ss_dssp CCCSSCEEEEEECSSEEE---EEETTSEEEEEETTTCCEEEEEE-CTT--CCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred eCCCCcEEEEEEcCCEEE---EEeCCCcEEEEECCCCceeeeec-CCC--CccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence 99999882 2 2 3333 8999999999986 455555543 444 788999999999999999999999985 57
Q ss_pred ceeee
Q psy682 267 NRLRH 271 (330)
Q Consensus 267 ~~las 271 (330)
+.+..
T Consensus 423 ~~~~~ 427 (464)
T 3v7d_B 423 KLVHA 427 (464)
T ss_dssp CEEES
T ss_pred cEEeh
Confidence 77765
No 47
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=204.25 Aligned_cols=220 Identities=11% Similarity=0.088 Sum_probs=164.1
Q ss_pred ccccceeecCCC-ceeEEEeCCCCCc-------Ccc--------------eeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682 17 LALLYAFPSCDS-SVRSLALSHDQKY-------SPM--------------MFSTVLDDVCMSLKFPSNSPICHVTANTYV 74 (330)
Q Consensus 17 g~~l~tl~gH~~-~V~svafSpdg~~-------~~l--------------~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~ 74 (330)
.+++.+|++|.. .|++++|||||++ ..+ ....+|.+.|..++|+|+++.+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-------- 76 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL-------- 76 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEE--------
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEE--------
Confidence 457788999998 9999999999998 000 1124788899999999999975
Q ss_pred eccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC--C-
Q psy682 75 TLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN--F- 147 (330)
Q Consensus 75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~--~- 147 (330)
|+++.|++|++|+.+... +.++.+|. ..+.++.|+||+. +++++.++. +..|.+... .
T Consensus 77 ---------~s~s~D~~v~iw~~~~~~~~~~~~~~~h~----~~v~~v~~sp~~~~l~s~s~D~~--v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 77 ---------ASASFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSGNLLATCSRDKS--VWVWEVDEEDEYE 141 (345)
T ss_dssp ---------EEEETTSCEEEEEECCC-EEEEEEECCCS----SCEEEEEECTTSSEEEEEETTSC--EEEEEECTTSCEE
T ss_pred ---------EEEECCCcEEEEEccCCCeEEEEEccCCC----CCceEEEEeCCCCEEEEEECCCe--EEEEECCCCCCeE
Confidence 888899999999986553 45667897 4677899999999 665444443 444444221 1
Q ss_pred -ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccccc--ccccccCCCCcEE----Ee--HHHHHhhhccCCC
Q psy682 148 -SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA--LQEGKFDHPNRLF----SS--ISLAWKNCQRDTS 215 (330)
Q Consensus 148 -~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dg 215 (330)
...+..| ..+++|+||+++ +++|+.|++||+ |+.++++ ...++.+|.+.|. .. ...+ |||.||
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~-w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~---s~s~D~ 216 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKL-YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA---SCSDDR 216 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEE-EEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE---EEETTS
T ss_pred EEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEE-EEecCCCEEEEEEecCCCCceEEEEECCCCCEEE---EEeCCC
Confidence 1122233 257889999998 556678999999 9998765 4578899999882 22 3334 899999
Q ss_pred cEEEEcc----------------cCceeeecCC-CCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682 216 DVKVHTT----------------FGDLLRSLDP-PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG 266 (330)
Q Consensus 216 tvkl~~~----------------~G~ll~tL~~-h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG 266 (330)
+|+||+. .++.+.++.+ |.. .|++|+|+|+|..||++ +++.+++|..+.
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--TIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS--CEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCC--cEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 9999974 1245667777 666 89999999999999998 488899998764
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.1e-24 Score=235.44 Aligned_cols=260 Identities=13% Similarity=0.103 Sum_probs=201.5
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------Ccceee--------------------------
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFS-------------------------- 47 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~-------------------------- 47 (330)
|+|+.||+|++|++.+++.+..+.+|...|++++|+|||+. ..+...
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET 935 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEE
T ss_pred EEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCc
Confidence 46889999999999999999999999999999999999986 111110
Q ss_pred ----------------------eecCccEEEEEeCCCCCeeEeeeccc-------------------------eeccCCc
Q psy682 48 ----------------------TVLDDVCMSLKFPSNSPICHVTANTY-------------------------VTLHMPS 80 (330)
Q Consensus 48 ----------------------~~~~d~~~~v~Fs~~~~v~~~~~~~~-------------------------~~~~~~~ 80 (330)
..+...+..+.|+|+++.++++.... +.+++++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp EEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS
T ss_pred EEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC
Confidence 01234578899999999998875432 3567788
Q ss_pred EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee---eE
Q psy682 81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NC 157 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~ 157 (330)
..+++++.|++|++|+...+......+|.+ .+.++.|++|+.+++++.++...+|....+. ....+..+. .+
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-IERDFTCHQGTVLS 1090 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEEECCBCCSS----CEEEEEECSSSEEEEEESSSEEEEEETTTTC-CCEEEECCSSCCCC
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEecCCC----cEEEEEEcCCCcEEEEECCCcEEEEECCCCc-eeEEEcccCCcEEE
Confidence 888999999999999998887777778874 6778999999998875555544443333222 223344443 57
Q ss_pred EEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-cCceeeec
Q psy682 158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSL 230 (330)
Q Consensus 158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL 230 (330)
++|+|||++ +++|+.|++|++ |++.+++.+..+.+|.+.|. .+ ...+ +|+.||+|+||+. +|+.++++
T Consensus 1091 ~~~s~d~~~-l~s~s~d~~v~i-wd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la---t~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1091 CAISSDATK-FSSTSADKTAKI-WSFDLLSPLHELKGHNGCVRCSAFSLDGILLA---TGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp EEECSSSSS-CEEECCSSCCCE-ECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE---EEETTSCCCEEESSSSCCCCCC
T ss_pred EEECCCCCE-EEEEcCCCcEEE-EECCCcceeeeeccCCCcEEEEEECCCCCEEE---EEeCCCEEEEEECCCCceEEEe
Confidence 889999999 555668999999 99999999999999999882 22 3344 8999999999976 69998887
Q ss_pred ---------CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeecc
Q psy682 231 ---------DPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHES 273 (330)
Q Consensus 231 ---------~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~ 273 (330)
.+|.+ .|.+++|||||+.||+++ +.+.+|.+ +|+.+....
T Consensus 1166 ~~~~~~~~~~~~~~--~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A 1166 APISVEEGTATHGG--WVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp CCCC-------CCS--CCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC
T ss_pred ccccccccccccCc--eEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee
Confidence 56777 899999999999999997 89999984 466666554
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=5.2e-24 Score=195.91 Aligned_cols=238 Identities=10% Similarity=0.073 Sum_probs=168.3
Q ss_pred cccC---CCcEEEeeccccccccee-ecCCCceeEEEeCCC---CCc------------------C-cceeeeecCccEE
Q psy682 2 SGGD---KGIVEVWRTFNLALLYAF-PSCDSSVRSLALSHD---QKY------------------S-PMMFSTVLDDVCM 55 (330)
Q Consensus 2 sgs~---d~~V~lW~~~~g~~l~tl-~gH~~~V~svafSpd---g~~------------------~-~l~~~~~~~d~~~ 55 (330)
+|+. ||+|++|++.+++..... .+|...|.+++|+|+ |++ . ++....+|.+.+.
T Consensus 36 ~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 115 (357)
T 3i2n_A 36 MGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN 115 (357)
T ss_dssp EEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE
T ss_pred ecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE
Confidence 4555 999999999988765443 489999999999999 465 1 3344556777777
Q ss_pred EE------EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCcc----ccC
Q psy682 56 SL------KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLP----LTL 123 (330)
Q Consensus 56 ~v------~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l~----fs~ 123 (330)
.+ +|+|+++. +++++.+++|++|+..... ......|.+.....+.++. |++
T Consensus 116 ~~~~~~~~~~s~~~~~-----------------l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 116 AIDGIGGLGIGEGAPE-----------------IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp EEEEESGGGCC-CCCE-----------------EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred EEeeccccccCCCccE-----------------EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 77 34566665 4888889999999997654 4444455443334555666 889
Q ss_pred CCc-eeccCCCCCCCcceeccCCCCccceee---eeeEEEEec---CCCeEEEeeccCCeEEEeeeccccccccccc---
Q psy682 124 DPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV---RHNCFVTTV---DSRFLLACGFWDNSFREPFTTMYLALQEGKF--- 193 (330)
Q Consensus 124 D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~sp---Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~--- 193 (330)
|+. +++++.++ .+..+.+...-...... ...+++|+| +++++++ |+.|++|++ |++.+++....+.
T Consensus 179 ~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~i-~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 179 EERVVCAGYDNG--DIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA-TSLEGKFHV-FDMRTQHPTKGFASVS 254 (357)
T ss_dssp CCCEEEEEETTS--EEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE-EESTTEEEE-EEEEEEETTTEEEEEE
T ss_pred CCCEEEEEccCC--eEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE-ECCCCeEEE-EeCcCCCcccceeeec
Confidence 999 55433333 33344432211111111 125888999 9998555 568999999 9999888877776
Q ss_pred --CCCCcEE----Ee--H-HHHHhhhccCCCcEEEEccc-C-------------------ceeeecCCCCCCCCCcEEEe
Q psy682 194 --DHPNRLF----SS--I-SLAWKNCQRDTSDVKVHTTF-G-------------------DLLRSLDPPSGFASPESVVM 244 (330)
Q Consensus 194 --gH~d~Vi----aS--t-~~lW~~SgS~Dgtvkl~~~~-G-------------------~ll~tL~~h~~~~~v~~v~f 244 (330)
+|...|. .+ . ..+ +|+.||+|+||+.. + +++.++.+|.+ .|.+++|
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 329 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFL---TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ--PISSLDW 329 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEE---EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS--CEEEEEE
T ss_pred cCCCcCCEEEEEECCCCCcEEE---EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC--CeeEEEE
Confidence 9999882 22 2 444 89999999999863 1 57889999988 9999999
Q ss_pred CCCccEEE-Ecc-CCeEEEEeeC
Q psy682 245 SREGVIVV-NYE-RGHIAAFTMN 265 (330)
Q Consensus 245 S~dG~~l~-s~~-~~~~~~~s~n 265 (330)
+|||+.|| +++ ++.+++|.+.
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEEEC
T ss_pred cCCCCeEEEEecCCCcEEEEECC
Confidence 99999888 675 8899999865
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=2.1e-24 Score=202.65 Aligned_cols=237 Identities=11% Similarity=0.063 Sum_probs=175.0
Q ss_pred CcccCCCcEEEeeccccc------ccceeecCCCceeEEEeCCC----C---Cc------------------Cc-----c
Q psy682 1 MSGGDKGIVEVWRTFNLA------LLYAFPSCDSSVRSLALSHD----Q---KY------------------SP-----M 44 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~------~l~tl~gH~~~V~svafSpd----g---~~------------------~~-----l 44 (330)
|+|+.||+|++|++.+++ .+.++.+|...|.+++|+|+ | ++ .. +
T Consensus 30 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 109 (397)
T 1sq9_A 30 VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 109 (397)
T ss_dssp EEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE
T ss_pred EEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccc
Confidence 578999999999999887 78999999999999999999 8 65 11 2
Q ss_pred eeeeec-----CccEEEEEeC----CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC------CC-cc-----
Q psy682 45 MFSTVL-----DDVCMSLKFP----SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY------AA-SI----- 103 (330)
Q Consensus 45 ~~~~~~-----~d~~~~v~Fs----~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~------~~-~~----- 103 (330)
.....| ...|..++|+ |+++. .+++++.++.|++|+... .. +.
T Consensus 110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 110 EKLDLLDSDMKKHSFWALKWGASNDRLLSH----------------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp EEECCSCTTGGGSCEEEEEEECCC----CE----------------EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred eeecccccccCCCcEEEEEEeeccCCCCce----------------EEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 333455 4777888888 77775 147778889999999876 33 33
Q ss_pred cC-------CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceee---e------eeEEEEecCCCe
Q psy682 104 QS-------PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRV---R------HNCFVTTVDSRF 166 (330)
Q Consensus 104 ~~-------~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~---~------~~~~~~spDg~~ 166 (330)
.+ ..|. ..+.++.|+||+.+++++.++ .+..+.+.. .....+.. + ..+++|+||+++
T Consensus 174 ~~~~~~~~~~~~~----~~i~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 174 ELQGTVESPMTPS----QFATSVDISERGLIATGFNNG--TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp EEEEEECCSSSSC----CCCCEEEECTTSEEEEECTTS--EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eeeeeeccccCCC----CCceEEEECCCceEEEEeCCC--cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 33 2244 467889999999444323333 334444321 12233444 3 358889999998
Q ss_pred EEEeeccC---CeEEEeeecccccccccccC-------------CCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-c
Q psy682 167 LLACGFWD---NSFREPFTTMYLALQEGKFD-------------HPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-F 223 (330)
Q Consensus 167 i~asg~~D---~tirl~w~~~~g~l~~~l~g-------------H~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~ 223 (330)
| ++|+.| +.|++ |++.+++.+..+.+ |...|. .. ...+ +|+.||+|+||+. +
T Consensus 248 l-~~~~~d~~~g~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 248 L-AIAHDSNSFGCITL-YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC---SAGWDGKLRFWDVKT 322 (397)
T ss_dssp E-EEEEEETTEEEEEE-EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE---EEETTSEEEEEETTT
T ss_pred E-EEEecCCCCceEEE-EECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE---EEeCCCeEEEEEcCC
Confidence 5 455679 99999 99999999999998 988872 21 3333 8999999999976 7
Q ss_pred CceeeecC------CC---------------CCCCCCcEEEeCCCc----------cEEEEcc-CCeEEEEeeCC
Q psy682 224 GDLLRSLD------PP---------------SGFASPESVVMSREG----------VIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 224 G~ll~tL~------~h---------------~~~~~v~~v~fS~dG----------~~l~s~~-~~~~~~~s~nG 266 (330)
|+.++++. +| .. .|.+++|+||| ++|++++ ++.++.|.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC--CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CceeEEEecccCcccchhhhhccccccccccCC--ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 99999999 87 77 99999999999 7888885 88999998754
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-24 Score=202.77 Aligned_cols=220 Identities=12% Similarity=0.114 Sum_probs=156.0
Q ss_pred cccccceeecCCCceeEEEeCCCCCc--------------Cc-----ceee-ee-cCccEEEEEeCCCCCeeEeeeccce
Q psy682 16 NLALLYAFPSCDSSVRSLALSHDQKY--------------SP-----MMFS-TV-LDDVCMSLKFPSNSPICHVTANTYV 74 (330)
Q Consensus 16 ~g~~l~tl~gH~~~V~svafSpdg~~--------------~~-----l~~~-~~-~~d~~~~v~Fs~~~~v~~~~~~~~~ 74 (330)
..+++.+|++|.+.|++++|+|+ .+ .. ...+ .+ |.+.|..++|+|+++.+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-------- 73 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL-------- 73 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE--------
T ss_pred ccccceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE--------
Confidence 45678899999999999999997 22 00 1112 23 88889999999999875
Q ss_pred eccCCcEEEEEcCCcceEEEeCCCCC--------CcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC
Q psy682 75 TLHMPSVVTVTANHQFAINRWNPDYA--------ASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD 145 (330)
Q Consensus 75 ~~~~~~~v~vS~~~~~tv~lW~~~~~--------~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~ 145 (330)
|+++.|++|++|+.... .+..+.+|. +.+.++.|+||+. +++++.++. +..|.+..
T Consensus 74 ---------as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~----~~V~~v~~sp~g~~las~s~D~~--v~iwd~~~ 138 (330)
T 2hes_X 74 ---------AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE----NEVKGVAWSNDGYYLATCSRDKS--VWIWETDE 138 (330)
T ss_dssp ---------EEEETTSCEEEEEC-------CCCEEEEEEC--------CEEEEEECTTSCEEEEEETTSC--EEEEECCT
T ss_pred ---------EEEeCCCcEEEEEcccCcCccccceeEEEEcCCC----CcEEEEEECCCCCEEEEEeCCCE--EEEEeccC
Confidence 88888999999998431 234456887 4677899999999 665444444 34444411
Q ss_pred ---C--Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccc--cccccccCCCCcEE----EeH----HHHH
Q psy682 146 ---N--FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYL--ALQEGKFDHPNRLF----SSI----SLAW 207 (330)
Q Consensus 146 ---~--~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH~d~Vi----aSt----~~lW 207 (330)
. ....+..|. .+++|+||+++ +++|+.|++||+ |+..++ +.+..+.+|.+.|. ... ..+
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~i-W~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~- 215 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRI-WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC- 215 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEE-EEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE-
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEE-EECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE-
Confidence 1 112233442 58889999998 556668999999 998765 67889999999883 221 233
Q ss_pred hhhccCCCcEEEEcccC---------ceeeecCC-CCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 208 KNCQRDTSDVKVHTTFG---------DLLRSLDP-PSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 208 ~~SgS~Dgtvkl~~~~G---------~ll~tL~~-h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
|||.||+|+||+..+ +.+.++.+ |.. .|++|+|++++.++..+.++.+++|..+.
T Consensus 216 --s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 216 --SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR--QVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp --EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS--CEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred --EEeCCCeEEEEEecCCCccccceeEEeeeccccccc--ceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 899999999998643 46677776 877 99999999888554444699999998754
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.9e-24 Score=195.51 Aligned_cols=238 Identities=10% Similarity=0.075 Sum_probs=169.0
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+++.+.++.+|...|++++|+||++. ..+... .+...+..+.|+|+
T Consensus 48 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~ 126 (369)
T 3zwl_B 48 FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVKRVEFSPC 126 (369)
T ss_dssp EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ecCCCeEEEEEccC
Confidence 57889999999999999999999999999999999999987 111111 25566777788888
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCc-----ceEEEeCCCCCC------------cccCCCCCCCCCCCCCCccccCCC
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQ-----FAINRWNPDYAA------------SIQSPSYAETPGSPPGNLPLTLDP 125 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~-----~tv~lW~~~~~~------------~~~~~~h~~~~~~~~~~l~fs~D~ 125 (330)
++.+ ++++.+ +.|++|+..... .....+|.+ ...+.++.|+||+
T Consensus 127 ~~~l-----------------~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 127 GNYF-----------------LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG--LDAATVAGWSTKG 187 (369)
T ss_dssp SSEE-----------------EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT--CCCEEEEEECGGG
T ss_pred CCEE-----------------EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC--ccceeEEEEcCCC
Confidence 8765 444444 889999986542 122223331 1256789999999
Q ss_pred c-eeccCCCCCCCcceeccCC--CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE
Q psy682 126 I-LTHPTSNNNAPVPKRHLGD--NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL 199 (330)
Q Consensus 126 ~-l~~~s~~~~~~~~~~~l~~--~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V 199 (330)
. +++++.++ .+..+.+.. .....+..+ ..+++|+||+++|+ +++.|++|++ |++.+++++..+. |...+
T Consensus 188 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v-~d~~~~~~~~~~~-~~~~~ 262 (369)
T 3zwl_B 188 KYIIAGHKDG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI-TSSRDTNSFL-VDVSTLQVLKKYE-TDCPL 262 (369)
T ss_dssp CEEEEEETTS--EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEE-EETTTCCEEEEEE-CSSCE
T ss_pred CEEEEEcCCC--EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE-EecCCceEEE-EECCCCceeeeec-CCCCc
Confidence 8 55433332 344455432 122223333 25788999999955 5568999999 9999998887776 44434
Q ss_pred ----EEe--HHHHHhhhccCCC--------------cEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC
Q psy682 200 ----FSS--ISLAWKNCQRDTS--------------DVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG 257 (330)
Q Consensus 200 ----iaS--t~~lW~~SgS~Dg--------------tvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~ 257 (330)
+.. ...+ .|+.|+ +|++|+. +|+.+.++.+|.+ .|.+++|+|||+.||+++ ++
T Consensus 263 ~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 263 NTAVITPLKEFII---LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--PLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp EEEEECSSSSEEE---EEECCC-------------CEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTS
T ss_pred eeEEecCCCceEE---EeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC--cEEEEEECCCCCEEEEEcCCC
Confidence 111 1111 334444 8999975 7999999999999 999999999999999995 88
Q ss_pred eEEEEeeCCce
Q psy682 258 HIAAFTMNGNR 268 (330)
Q Consensus 258 ~~~~~s~nG~~ 268 (330)
.+++|..+...
T Consensus 338 ~v~iw~~~~~~ 348 (369)
T 3zwl_B 338 FIRLHHFEKSY 348 (369)
T ss_dssp EEEEEEECHHH
T ss_pred eEEEEECcccc
Confidence 99999987643
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-24 Score=204.64 Aligned_cols=241 Identities=13% Similarity=0.077 Sum_probs=168.7
Q ss_pred CcccCCCcEEEeeccc----ccccceeecCCCceeEEEeCCC-CCc------------------C------ccee---ee
Q psy682 1 MSGGDKGIVEVWRTFN----LALLYAFPSCDSSVRSLALSHD-QKY------------------S------PMMF---ST 48 (330)
Q Consensus 1 asgs~d~~V~lW~~~~----g~~l~tl~gH~~~V~svafSpd-g~~------------------~------~l~~---~~ 48 (330)
|+|+.||+|++|++.+ .+.+.++.+|...|++++|+|| +++ . .... ..
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence 4788999999999987 3588899999999999999998 665 1 0001 13
Q ss_pred ecCccEEEEEeCCC-CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCC--CCCCCCCccccCC
Q psy682 49 VLDDVCMSLKFPSN-SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAET--PGSPPGNLPLTLD 124 (330)
Q Consensus 49 ~~~d~~~~v~Fs~~-~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~--~~~~~~~l~fs~D 124 (330)
+|.+.+..+.|+|+ +.+ +++++.+++|++|+....... ....|... ....+.++.|+||
T Consensus 163 ~~~~~v~~~~~~~~~~~~-----------------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHV-----------------FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp CSSCCCCEEEECSSCTTE-----------------EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred CCCCCeeEEEeCCCCCcE-----------------EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence 56677788888887 454 488889999999999765433 33333100 0246788999999
Q ss_pred Cc--eeccCCCCCC-CcceeccCC--CCcccee-eee---eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccC
Q psy682 125 PI--LTHPTSNNNA-PVPKRHLGD--NFSQKLR-VRH---NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFD 194 (330)
Q Consensus 125 ~~--l~~~s~~~~~-~~~~~~l~~--~~~~~~~-~~~---~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~g 194 (330)
+. +++++.++.. .+..+.+.. .....+. .+. .+++|+| |+++ +++|+.|++|++ |++.+++++..+.+
T Consensus 226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~-wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLL-WNPESAEQLSQFPA 303 (416)
T ss_dssp CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEE-ECSSSCCEEEEEEC
T ss_pred CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEE-eeCCCCccceeecC
Confidence 73 5554444300 333444322 2233444 443 5888999 8888 555668999999 99999999999999
Q ss_pred CCCcE----EEe---HHHHHhhhccCCCcEEEEccc-CceeeecCC----------------------------------
Q psy682 195 HPNRL----FSS---ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDP---------------------------------- 232 (330)
Q Consensus 195 H~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~---------------------------------- 232 (330)
|.+.| +.. ...+ +|+.||+|+||+.. ++...+...
T Consensus 304 ~~~~v~~~~~s~~~~~~l~---s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFA---CASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPT 380 (416)
T ss_dssp SSSCCCCEEECTTCTTEEE---ECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCS
T ss_pred CCCceEEEEECCCCCCEEE---EEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCc
Confidence 99877 222 2334 89999999999863 443332211
Q ss_pred -CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 233 -PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 233 -h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
|.. .|.+++|||||++||+++ ++.+++|.+.
T Consensus 381 ~~~~--~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 381 WYGE--PSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp TTCC--CSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cccC--CccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 344 788999999999999996 7788888754
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=8e-24 Score=228.60 Aligned_cols=263 Identities=10% Similarity=0.066 Sum_probs=193.6
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+|+.+.++.+|.+.|.+++|||||++ ..+..+.+|...+..+.|+|+
T Consensus 631 ~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 631 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence 57899999999999999999999999999999999999987 223445689999999999994
Q ss_pred --CCeeEeeeccc-------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCC---------
Q psy682 63 --SPICHVTANTY-------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSP--------- 106 (330)
Q Consensus 63 --~~v~~~~~~~~-------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~--------- 106 (330)
..+++.+..+. ..+.+++...++++.|++|++|+..........
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 44555554322 356677778899999999999998654321110
Q ss_pred -CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC-Ccccee-ee---eeEEEEecCCCeEEEeeccCCeEEEe
Q psy682 107 -SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQKLR-VR---HNCFVTTVDSRFLLACGFWDNSFREP 180 (330)
Q Consensus 107 -~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-~~~~~~-~~---~~~~~~spDg~~i~asg~~D~tirl~ 180 (330)
.........+.++.|+||+.+...++++ .+..+.+... ....+. .+ ..+++|+||+++ +++|+.|++|++
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~v- 866 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVEL- 866 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETT--EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE-EEEECSSSCEEE-
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCC--cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE-EEEEeCCCeEEE-
Confidence 1111122367789999999944433332 3333333211 001111 11 257889999998 555668999999
Q ss_pred eecccccccccccCCCCcE-----------EEe-----HHHHHhh-----------------------------------
Q psy682 181 FTTMYLALQEGKFDHPNRL-----------FSS-----ISLAWKN----------------------------------- 209 (330)
Q Consensus 181 w~~~~g~l~~~l~gH~d~V-----------iaS-----t~~lW~~----------------------------------- 209 (330)
|++++++.+..+.+|.+.| +++ ++++|+.
T Consensus 867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 9999999999999999987 222 6777752
Q ss_pred -------------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-C
Q psy682 210 -------------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R 256 (330)
Q Consensus 210 -------------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~ 256 (330)
+|+.||+|++|+. +|+.+.++.+|.+ .|.+++|||||+.|++++ +
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK--AVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS--CCCCEEECSSSSCEEEECSS
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC--ceEEEEECCCCCEEEEEcCC
Confidence 4678888888865 6899999999999 999999999999999985 8
Q ss_pred CeEEEEeeCCcee
Q psy682 257 GHIAAFTMNGNRL 269 (330)
Q Consensus 257 ~~~~~~s~nG~~l 269 (330)
+.+..|.......
T Consensus 1025 g~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDY 1037 (1249)
T ss_dssp SBEEEEETTTTEE
T ss_pred CEEEEEECCCCce
Confidence 8899998665443
No 55
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=1.5e-23 Score=198.93 Aligned_cols=237 Identities=9% Similarity=0.045 Sum_probs=171.5
Q ss_pred cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
+...+|+||.+.|++++|+|||+. ........+...++.++|+|++..
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~-------------- 120 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA-------------- 120 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE--------------
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE--------------
Confidence 456789999999999999999987 111223355566777778888776
Q ss_pred cEEEEEcCCcceEEEeCCCCCC-------cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682 80 SVVTVTANHQFAINRWNPDYAA-------SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL 151 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~-------~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~ 151 (330)
+|+++.|+++++|+..... .....+|. ..+.++.|++|+. +++++.++...+|....+. ..+++
T Consensus 121 ---lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~ 192 (354)
T 2pbi_B 121 ---IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT----NYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSF 192 (354)
T ss_dssp ---EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS----SCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred ---EEEeeCCCCEEEEEEeccccccccccceeeeccC----CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEE
Confidence 4899999999999875431 23344676 3567899999997 7765555544444333222 22445
Q ss_pred eeee---eEEEEec--CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE--e--HHHHHhhhccCCCcEEEE
Q psy682 152 RVRH---NCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS--S--ISLAWKNCQRDTSDVKVH 220 (330)
Q Consensus 152 ~~~~---~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia--S--t~~lW~~SgS~Dgtvkl~ 220 (330)
.+|. .+++++| +|++ +++|+.|++|++ |++.+++.++.+.+|.+.| ++ + ...+ +||.||+|+||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~-l~sgs~Dg~v~~-wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~---s~s~D~~v~lw 267 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNT-FVSGGCDKKAMV-WDMRSGQCVQAFETHESDVNSVRYYPSGDAFA---SGSDDATCRLY 267 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCE-EEEEeCCCeEEE-EECCCCcEEEEecCCCCCeEEEEEeCCCCEEE---EEeCCCeEEEE
Confidence 5553 4667766 5777 556678999999 9999999999999999988 22 1 3333 89999999999
Q ss_pred cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc-cccccc
Q psy682 221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN-DNLQEL 281 (330)
Q Consensus 221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~-~dVkEL 281 (330)
+. .++.+..+..+.....+.+++|||+|++|++++ ++++++|.. +|+.+..+..| +.|..|
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence 86 567777776654323789999999999999985 789999986 78888777644 334443
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.90 E-value=5e-24 Score=197.55 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=165.9
Q ss_pred CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682 1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 78 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~ 78 (330)
|+|+.|++|++|++.+++ .+.++.+|...|.+++|+|||++
T Consensus 24 ~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~------------------------------------- 66 (372)
T 1k8k_C 24 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR------------------------------------- 66 (372)
T ss_dssp EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE-------------------------------------
T ss_pred EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCE-------------------------------------
Confidence 468899999999998887 88999999999999999998877
Q ss_pred CcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC--ccce-
Q psy682 79 PSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF--SQKL- 151 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~--~~~~- 151 (330)
+++++.+++|++|+..... .....+|. ..+.++.|+||+. +++++.++...++....+... ...+
T Consensus 67 ----l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 67 ----IVTCGTDRNAYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp ----EEEEETTSCEEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred ----EEEEcCCCeEEEEECCCCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 4677788899999986654 23335665 4677899999998 665444444434433322210 0111
Q ss_pred ---eeeeeEEEEecCCCeEEEeeccCCeEEEeeec------------------ccccccccccCCCCcEE----Ee--HH
Q psy682 152 ---RVRHNCFVTTVDSRFLLACGFWDNSFREPFTT------------------MYLALQEGKFDHPNRLF----SS--IS 204 (330)
Q Consensus 152 ---~~~~~~~~~spDg~~i~asg~~D~tirl~w~~------------------~~g~l~~~l~gH~d~Vi----aS--t~ 204 (330)
.....+++|+||+++ +++|+.|++|++ |++ ..++++..+.+|...|. .. ..
T Consensus 139 ~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVL-LAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 216 (372)
T ss_dssp TTCCSCEEEEEECTTSSE-EEEEETTSCEEE-EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred cccCCCeeEEEEcCCCCE-EEEEcCCCCEEE-EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE
Confidence 112358899999998 555668999999 994 36788888889998872 11 33
Q ss_pred HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
.+ +|+.||+|++|+. +|++++++.+|.. .|.+++|+|||++|+++.++.++.|..+.
T Consensus 217 l~---~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 217 VA---WVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EE---EEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EE---EEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 33 8999999999976 7999999999988 89999999999999999999999999876
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=1.3e-23 Score=215.98 Aligned_cols=245 Identities=11% Similarity=0.097 Sum_probs=187.1
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+|+.+.++.+|...|.+++|||||+. ..+....+|.+.+..+.|+|+
T Consensus 29 a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~ 108 (814)
T 3mkq_A 29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108 (814)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC
Confidence 57889999999999999999999999999999999999987 222345678899999999999
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-C-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCc
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-A-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPV 138 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~ 138 (330)
++.+ ++++.+++|++|+.+.+ . .....+|. ..+.++.|+| |+. +++++.++. +
T Consensus 109 ~~~l-----------------~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~--v 165 (814)
T 3mkq_A 109 KPYV-----------------LSGSDDLTVKLWNWENNWALEQTFEGHE----HFVMCVAFNPKDPSTFASGCLDRT--V 165 (814)
T ss_dssp SSEE-----------------EEEETTSEEEEEEGGGTSEEEEEEECCS----SCEEEEEEETTEEEEEEEEETTSE--E
T ss_pred CCEE-----------------EEEcCCCEEEEEECCCCceEEEEEcCCC----CcEEEEEEEcCCCCEEEEEeCCCe--E
Confidence 9975 77888999999998754 2 34445776 4677899999 886 665444433 3
Q ss_pred ceeccCCC-Cccceeee----eeEEEEec--CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHH
Q psy682 139 PKRHLGDN-FSQKLRVR----HNCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISL 205 (330)
Q Consensus 139 ~~~~l~~~-~~~~~~~~----~~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~ 205 (330)
..|.+... ....+..+ ..+++++| |+++ +++|+.|++|++ |++.+++.+..+.+|...|. .+ ...
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 243 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKI-WDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEE-EETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEE-EECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 44444221 11122222 25788998 9998 555668999999 99999999999999998872 11 333
Q ss_pred HHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCcc--EEEEccCCeEEEE-----------eeCCceeee
Q psy682 206 AWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGV--IVVNYERGHIAAF-----------TMNGNRLRH 271 (330)
Q Consensus 206 lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~--~l~s~~~~~~~~~-----------s~nG~~las 271 (330)
+ +|+.||+|++|+. +|++++++..|.. .|.+++|+|+|. +++++.++.++.| +++|+.+++
T Consensus 244 ~---~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (814)
T 3mkq_A 244 I---SGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318 (814)
T ss_dssp E---EEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred E---EEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence 3 8999999999976 6899999999988 999999999998 6777766655444 567888876
Q ss_pred ccCc
Q psy682 272 ESHN 275 (330)
Q Consensus 272 ~~~~ 275 (330)
...+
T Consensus 319 ~~~~ 322 (814)
T 3mkq_A 319 GGKN 322 (814)
T ss_dssp CCTT
T ss_pred Cccc
Confidence 5433
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=2.2e-23 Score=199.77 Aligned_cols=243 Identities=14% Similarity=0.105 Sum_probs=168.4
Q ss_pred cEEEeeccccc-----ccceeecCCCceeEEEeCCCCCc------C-----------cceeeeec---------------
Q psy682 8 IVEVWRTFNLA-----LLYAFPSCDSSVRSLALSHDQKY------S-----------PMMFSTVL--------------- 50 (330)
Q Consensus 8 ~V~lW~~~~g~-----~l~tl~gH~~~V~svafSpdg~~------~-----------~l~~~~~~--------------- 50 (330)
...+|+....+ +... .+|.+.|++++|||||++ . .+..+.++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~ 119 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKS-LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC----------------
T ss_pred eEEEECCCCCcccCceeEEe-cCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCcccccccccccccccc
Confidence 34577654322 2223 379999999999999997 0 00111111
Q ss_pred ---CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc
Q psy682 51 ---DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI 126 (330)
Q Consensus 51 ---~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~ 126 (330)
+..|..++|+||++.+ |+++.|++|++|+..... ...+.+|.. .+.++.|+||+.
T Consensus 120 ~~~~~~v~~v~~s~dg~~l-----------------~s~~~d~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~p~~~ 178 (393)
T 1erj_A 120 PSSDLYIRSVCFSPDGKFL-----------------ATGAEDRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGD 178 (393)
T ss_dssp -CCCCBEEEEEECTTSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSS
T ss_pred CCCceeEEEEEECCCCCEE-----------------EEEcCCCeEEEEECCCCcEEEEEccCCC----CEEEEEEcCCCC
Confidence 1136777777777764 888889999999997655 455668974 677899999998
Q ss_pred -eeccCCCCCCCcceeccCCC-Cccceee--eeeEEEEec-CCCeEEEeeccCCeEEEeeecccccccccc-------cC
Q psy682 127 -LTHPTSNNNAPVPKRHLGDN-FSQKLRV--RHNCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGK-------FD 194 (330)
Q Consensus 127 -l~~~s~~~~~~~~~~~l~~~-~~~~~~~--~~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l-------~g 194 (330)
+++++.++. +..|.+... ....+.. ...+++++| ||++ +++|+.|++||+ |++.+++++..+ .+
T Consensus 179 ~l~s~s~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~s~d~~v~i-wd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 179 KLVSGSGDRT--VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY-IAAGSLDRAVRV-WDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp EEEEEETTSE--EEEEETTTTEEEEEEECSSCEEEEEECSTTCCE-EEEEETTSCEEE-EETTTCCEEEEEC------CC
T ss_pred EEEEecCCCc--EEEEECCCCeeEEEEEcCCCcEEEEEECCCCCE-EEEEcCCCcEEE-EECCCCcEEEeecccccCCCC
Confidence 655444433 344444221 1111111 135788999 8988 556678999999 999988877666 68
Q ss_pred CCCcEE----Ee--HHHHHhhhccCCCcEEEEccc-------------CceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682 195 HPNRLF----SS--ISLAWKNCQRDTSDVKVHTTF-------------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 195 H~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~~-------------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
|.+.|. .. ...+ +||.||+|+||+.. |....++.+|.+ .|.+++|+|+|+.|++++
T Consensus 255 h~~~v~~v~~~~~g~~l~---s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVV---SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGS 329 (393)
T ss_dssp CSSCEEEEEECTTSSEEE---EEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEE
T ss_pred CCCCEEEEEECCCCCEEE---EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEe
Confidence 998882 11 3334 89999999999753 567788999999 999999999999999995
Q ss_pred -CCeEEEEee-CCceeeeccCc-cccccc
Q psy682 256 -RGHIAAFTM-NGNRLRHESHN-DNLQEL 281 (330)
Q Consensus 256 -~~~~~~~s~-nG~~las~~~~-~dVkEL 281 (330)
++.+++|.. +|+.+..+..| ..|..+
T Consensus 330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 330 KDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 788999975 57777777654 334443
No 59
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=197.80 Aligned_cols=236 Identities=9% Similarity=0.064 Sum_probs=165.7
Q ss_pred CcccCCCcEEEeeccccc-----------ccceeecCC------------CceeEEEeCCCCC--c-------Ccc----
Q psy682 1 MSGGDKGIVEVWRTFNLA-----------LLYAFPSCD------------SSVRSLALSHDQK--Y-------SPM---- 44 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~-----------~l~tl~gH~------------~~V~svafSpdg~--~-------~~l---- 44 (330)
|+|+.||+|+||++.+++ .+.++.+|. +.|.+|+|+|++. . ..+
T Consensus 44 a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~ 123 (447)
T 3dw8_B 44 ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK 123 (447)
T ss_dssp EEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEE
T ss_pred EEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEe
Confidence 578999999999998877 588899999 8999999999983 3 000
Q ss_pred -----------------------------------------------eeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682 45 -----------------------------------------------MFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH 77 (330)
Q Consensus 45 -----------------------------------------------~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~ 77 (330)
.+..+|.+.|..++|+|+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l----------- 192 (447)
T 3dw8_B 124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY----------- 192 (447)
T ss_dssp EEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE-----------
T ss_pred cccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE-----------
Confidence 0123577778888888888864
Q ss_pred CCcEEEEEcCCcceEEEeCCC-CCCcc--------cCCCCCCCCCCCCCCccccCCC-c-eeccCCCCCCCcceeccCCC
Q psy682 78 MPSVVTVTANHQFAINRWNPD-YAASI--------QSPSYAETPGSPPGNLPLTLDP-I-LTHPTSNNNAPVPKRHLGDN 146 (330)
Q Consensus 78 ~~~~v~vS~~~~~tv~lW~~~-~~~~~--------~~~~h~~~~~~~~~~l~fs~D~-~-l~~~s~~~~~~~~~~~l~~~ 146 (330)
+++ .|++|++|+.. ..... +..+|. ..+.++.|+||+ . +++++.++...+|....+..
T Consensus 193 ------~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 193 ------LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT----EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp ------EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC----CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred ------EEe-CCCeEEEEECCCCCceeeeeecccccccccC----cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 666 69999999997 23222 244776 467889999998 5 66545544443333222221
Q ss_pred C---ccceeee---------------eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCc---------
Q psy682 147 F---SQKLRVR---------------HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNR--------- 198 (330)
Q Consensus 147 ~---~~~~~~~---------------~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~--------- 198 (330)
. ...+..+ ..+++|+|||++|++ |+. ++|++ |++.+ ++++..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~-~~v~i-wd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT-RDY-LSVKV-WDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE-EES-SEEEE-EETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE-eeC-CeEEE-EeCCCCccccceeecccccccccccccc
Confidence 0 1333332 358889999999655 544 99999 99987 8999999999642
Q ss_pred ---------E-EEe--HHHHHhhhccCCCcEEEEcccCceeeecCCCCC-------------------------------
Q psy682 199 ---------L-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG------------------------------- 235 (330)
Q Consensus 199 ---------V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~------------------------------- 235 (330)
+ +.. ...+ +||.||+|+||+.+.....+|.+|..
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~---s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVM---TGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEE---EECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred ccccccceEEEECCCCCEEE---EeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccccc
Confidence 2 221 2223 89999999999875433335555431
Q ss_pred CCCCcEEEeCCCccEEEEccCCeEEEEee
Q psy682 236 FASPESVVMSREGVIVVNYERGHIAAFTM 264 (330)
Q Consensus 236 ~~~v~~v~fS~dG~~l~s~~~~~~~~~s~ 264 (330)
...|..++|+|+|.+||.++.+.+++|+-
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecceeeeecc
Confidence 12688999999999999998888888873
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.1e-22 Score=194.47 Aligned_cols=237 Identities=13% Similarity=0.037 Sum_probs=166.7
Q ss_pred CcccCCCcEEEeecccccccceeec-CCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPS-CDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPS 61 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~g-H~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~ 61 (330)
++++.||+|++|++.+|+....+.. |...|.+|+|+|||++ ..+....+|...+..+.|
T Consensus 107 ~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 184 (401)
T 4aez_A 107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-- 184 (401)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--
T ss_pred EEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--
Confidence 4678999999999999998888876 8999999999999987 111112234444444444
Q ss_pred CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC--CcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc
Q psy682 62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA--ASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV 138 (330)
Q Consensus 62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~--~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~ 138 (330)
++. .+++++.+++|++|+.... ......+|.+ .+.++.|+||+. +++++.++ .+
T Consensus 185 ~~~-----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~d~--~v 241 (401)
T 4aez_A 185 NRH-----------------VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS----EVCGLAWRSDGLQLASGGNDN--VV 241 (401)
T ss_dssp ETT-----------------EEEEEETTSEEEEEETTSSSCEEEEEECCSS----CEEEEEECTTSSEEEEEETTS--CE
T ss_pred CCC-----------------EEEEEcCCCCEEEEecccCcceeeEEcCCCC----CeeEEEEcCCCCEEEEEeCCC--eE
Confidence 222 3588888999999999732 2445558874 677899999998 66534433 34
Q ss_pred ceeccCCC-Cccceeee---eeEEEEecCCCeEEEeec--cCCeEEEeeecccccccccccCCCCcE-E--Ee--HHHHH
Q psy682 139 PKRHLGDN-FSQKLRVR---HNCFVTTVDSRFLLACGF--WDNSFREPFTTMYLALQEGKFDHPNRL-F--SS--ISLAW 207 (330)
Q Consensus 139 ~~~~l~~~-~~~~~~~~---~~~~~~spDg~~i~asg~--~D~tirl~w~~~~g~l~~~l~gH~d~V-i--aS--t~~lW 207 (330)
..|.+... ....+..+ ..+++++|+++.++++|+ .|++|++ |++.+++++..+..+..+. + .. ...+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i-~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 319 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF-WNAATGARVNTVDAGSQVTSLIWSPHSKEIM- 319 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE-EETTTCCEEEEEECSSCEEEEEECSSSSEEE-
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE-EECCCCCEEEEEeCCCcEEEEEECCCCCeEE-
Confidence 44444321 11122222 258899999988888865 8999999 9999999888876544322 1 11 1111
Q ss_pred hhhccCCCcEEEEcc-cCceee--ecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682 208 KNCQRDTSDVKVHTT-FGDLLR--SLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 208 ~~SgS~Dgtvkl~~~-~G~ll~--tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG 266 (330)
..+|+.||+|+||+. +|+... .+.+|.+ .|.+++|+|||+.|++++ ++.++.|.+..
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDT--RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEEEEEEECCSS--CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEeecCCCcEEEEecCCccceeEEEecCCCC--CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 003779999999976 454544 4779988 999999999999999985 88999998753
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.90 E-value=5.3e-23 Score=193.07 Aligned_cols=217 Identities=9% Similarity=0.078 Sum_probs=159.0
Q ss_pred cccceeecCCCceeEEEe-----CC-CCCc---------------C----------cceeeeecCccEEEEEeCCCCCee
Q psy682 18 ALLYAFPSCDSSVRSLAL-----SH-DQKY---------------S----------PMMFSTVLDDVCMSLKFPSNSPIC 66 (330)
Q Consensus 18 ~~l~tl~gH~~~V~svaf-----Sp-dg~~---------------~----------~l~~~~~~~d~~~~v~Fs~~~~v~ 66 (330)
++..+|+||.+.|++|+| +| ||++ . +...+.+|.+.|..++|+|++..+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 566789999999999999 77 7776 0 112345788888888888888864
Q ss_pred EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC
Q psy682 67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG 144 (330)
Q Consensus 67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~ 144 (330)
+|++.|++|++|+...+. +.++.+|.+ .+.++.|+||+. +++++.++. +..|.+.
T Consensus 92 -----------------~s~s~D~~v~lwd~~~~~~~~~~~~h~~----~v~~v~~sp~~~~l~s~~~d~~--i~~wd~~ 148 (343)
T 2xzm_R 92 -----------------ISSSWDKTLRLWDLRTGTTYKRFVGHQS----EVYSVAFSPDNRQILSAGAERE--IKLWNIL 148 (343)
T ss_dssp -----------------EEEETTSEEEEEETTSSCEEEEEECCCS----CEEEEEECSSTTEEEEEETTSC--EEEEESS
T ss_pred -----------------EEEcCCCcEEEEECCCCcEEEEEcCCCC----cEEEEEECCCCCEEEEEcCCCE--EEEEecc
Confidence 888999999999987554 455668974 677899999998 665444443 4444432
Q ss_pred CCCcc------ceeeeeeEEEEecCC----------CeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--
Q psy682 145 DNFSQ------KLRVRHNCFVTTVDS----------RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS-- 202 (330)
Q Consensus 145 ~~~~~------~~~~~~~~~~~spDg----------~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS-- 202 (330)
..... .-.....+++|+|++ ++ +++|++|++||+ |+. .+++...+.+|...|. ..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~i-wd~-~~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY-FASVGWDGRLKV-WNT-NFQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCE-EEEEETTSEEEE-EET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCE-EEEEcCCCEEEE-EcC-CCceeEEEcCccccceEEEECCCC
Confidence 21100 011123588899987 56 666779999999 996 5788888999999882 12
Q ss_pred HHHHHhhhccCCCcEEEEcc--cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 203 ISLAWKNCQRDTSDVKVHTT--FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 203 t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
...+ +||.||+|+||+. .+...+.+. +.. .|.+|+|+|+|++|+.+.++.+++|....
T Consensus 226 ~~l~---sgs~dg~v~iwd~~~~~~~~~~~~-~~~--~v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 226 KYIA---TGGKDKKLLIWDILNLTYPQREFD-AGS--TINQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp SEEE---EEETTCEEEEEESSCCSSCSEEEE-CSS--CEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred CEEE---EEcCCCeEEEEECCCCcccceeec-CCC--cEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3334 8999999999986 344555553 334 79999999999999988888999998654
No 62
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.89 E-value=4.6e-23 Score=186.41 Aligned_cols=212 Identities=11% Similarity=0.094 Sum_probs=159.2
Q ss_pred CcccCCCcEEEeecccc----cccceeecCCCceeEEEeCC--CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682 1 MSGGDKGIVEVWRTFNL----ALLYAFPSCDSSVRSLALSH--DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYV 74 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g----~~l~tl~gH~~~V~svafSp--dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~ 74 (330)
|+|+.||+|++|++.++ +.+.++.+|...|.+++|+| |+++
T Consensus 27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~--------------------------------- 73 (351)
T 3f3f_A 27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI--------------------------------- 73 (351)
T ss_dssp EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE---------------------------------
T ss_pred EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE---------------------------------
Confidence 57899999999999876 46778899999999999999 4655
Q ss_pred eccCCcEEEEEcCCcceEEEeCCCCCC----------cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCccee
Q psy682 75 TLHMPSVVTVTANHQFAINRWNPDYAA----------SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKR 141 (330)
Q Consensus 75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~----------~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~ 141 (330)
+++++.|++|++|+.+... .....+|. ..+.++.|+|| +. +++++.++...+|..
T Consensus 74 --------l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 74 --------IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK----GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp --------EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred --------EEEEcCCCeEEEEecCCCcccccccCcceeeeecccC----CceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 4788889999999997643 44455776 46778999999 77 665444443333332
Q ss_pred ccCCCCcccee----------------eeeeEEEEecC---CCeEEEeeccCCeEEEeeecccccc--cccccCCCCcE-
Q psy682 142 HLGDNFSQKLR----------------VRHNCFVTTVD---SRFLLACGFWDNSFREPFTTMYLAL--QEGKFDHPNRL- 199 (330)
Q Consensus 142 ~l~~~~~~~~~----------------~~~~~~~~spD---g~~i~asg~~D~tirl~w~~~~g~l--~~~l~gH~d~V- 199 (330)
..+... +.+. ....+++++|+ +++ +++++.|+.+.+ |....+++ +..+.+|.+.|
T Consensus 142 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~ 218 (351)
T 3f3f_A 142 LEPSDL-RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK-LAVSALEQAIIY-QRGKDGKLHVAAKLPGHKSLIR 218 (351)
T ss_dssp SSTTCT-TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE-EEEEETTEEEEE-EECTTSCEEEEEECCCCCSCEE
T ss_pred CChHHh-ccccccccccccccccCCcccceeEEEeccCCCCCcE-EEEecCCCcEEE-EccCCCceeeeeecCCCCccee
Confidence 212211 1111 12258889997 777 555668999988 88776765 77888999988
Q ss_pred -E--EeH------HHHHhhhccCCCcEEEEcccC----------------------------------------------
Q psy682 200 -F--SSI------SLAWKNCQRDTSDVKVHTTFG---------------------------------------------- 224 (330)
Q Consensus 200 -i--aSt------~~lW~~SgS~Dgtvkl~~~~G---------------------------------------------- 224 (330)
+ ... ..+ +|+.||+|++|+...
T Consensus 219 ~~~~~p~~~~~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIA---TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp EEEECCCSSCSSEEEE---EEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred EEEECCCCCCcceEEE---EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 2 222 344 899999999997643
Q ss_pred -ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 225 -DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 225 -~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
++++++.+|.+ .|.+|+|+|||+.||+++ ++.+++|.++
T Consensus 296 ~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 296 VELLSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEEEEECTTSS--CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccEEEEEecccc--cEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 78999999999 999999999999999995 8899999876
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.9e-23 Score=223.47 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=177.1
Q ss_pred cccCCCcEEEeeccccccc-------ceeecCCCceeEEEeCCCCCc----------CcceeeeecCccEEEEEeCCCCC
Q psy682 2 SGGDKGIVEVWRTFNLALL-------YAFPSCDSSVRSLALSHDQKY----------SPMMFSTVLDDVCMSLKFPSNSP 64 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l-------~tl~gH~~~V~svafSpdg~~----------~~l~~~~~~~d~~~~v~Fs~~~~ 64 (330)
+++.||+|++|++.+|+.. ..+.+|...|++++|+++... .....+.+|...+.+++|+|+++
T Consensus 369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~ 448 (902)
T 2oaj_A 369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT 448 (902)
T ss_dssp EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE
T ss_pred EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc
Confidence 4567899999999887543 246788899999999863211 11224568888888999999999
Q ss_pred eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC------------CCCCCCCCCCCCCccccCCCc-eeccC
Q psy682 65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS------------PSYAETPGSPPGNLPLTLDPI-LTHPT 131 (330)
Q Consensus 65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~------------~~h~~~~~~~~~~l~fs~D~~-l~~~s 131 (330)
++ ||++.|++||+|+.+.+.+.+. .+|. ..+.+++|+||++ +++++
T Consensus 449 ~l-----------------aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~----~~V~svafspdg~~LAsgs 507 (902)
T 2oaj_A 449 AF-----------------ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE----LAVDKISFAAETLELAVSI 507 (902)
T ss_dssp EE-----------------EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS----CCEEEEEEETTTTEEEEEE
T ss_pred EE-----------------EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC----CceeEEEecCCCCeEEEEe
Confidence 75 8999999999999987654432 1665 4688899999999 77766
Q ss_pred CCCCCCcceeccCCCC--------------------------------------------ccceeeee---eEEEEecCC
Q psy682 132 SNNNAPVPKRHLGDNF--------------------------------------------SQKLRVRH---NCFVTTVDS 164 (330)
Q Consensus 132 ~~~~~~~~~~~l~~~~--------------------------------------------~~~~~~~~---~~~~~spDg 164 (330)
.++...+|...-+..+ ...+++|. .+++|||||
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG 587 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG 587 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS
T ss_pred cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc
Confidence 6666666654432110 12233343 589999999
Q ss_pred CeEEEeeccCCeEEEeeeccccccc-----cccc-CCCCcE----EE----------eHHHHHhhhccCCCcEEEEcc--
Q psy682 165 RFLLACGFWDNSFREPFTTMYLALQ-----EGKF-DHPNRL----FS----------SISLAWKNCQRDTSDVKVHTT-- 222 (330)
Q Consensus 165 ~~i~asg~~D~tirl~w~~~~g~l~-----~~l~-gH~d~V----ia----------St~~lW~~SgS~Dgtvkl~~~-- 222 (330)
+ +|+|+.|++||| |++++++++ +.+. +|.+.| |. +..++ |||.||||++|+.
T Consensus 588 -~-lAsgs~D~tv~l-wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~---sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 588 -F-VGIAYAAGSLML-IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV---CGTDMGEVITYKILP 661 (902)
T ss_dssp -E-EEEEETTSEEEE-EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE---EEETTSEEEEEEEEE
T ss_pred -E-EEEEeCCCcEEE-EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE---EEecCCcEEEEEEec
Confidence 6 778889999999 999866553 3554 999998 44 12333 9999999999985
Q ss_pred --cCceeeecCCCCC---CCCCcEEE-eC----------------------CCccEEEEccCCeEEEEee-CCceeeec
Q psy682 223 --FGDLLRSLDPPSG---FASPESVV-MS----------------------REGVIVVNYERGHIAAFTM-NGNRLRHE 272 (330)
Q Consensus 223 --~G~ll~tL~~h~~---~~~v~~v~-fS----------------------~dG~~l~s~~~~~~~~~s~-nG~~las~ 272 (330)
+|+++.+|.+|.. ...|.+|+ |+ ++|++||++ +..+++|++ .||.+...
T Consensus 662 ~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~ 739 (902)
T 2oaj_A 662 ASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKG 739 (902)
T ss_dssp CGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEE
T ss_pred CCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeE
Confidence 8999999999851 12788787 76 889999998 556888876 45555444
No 64
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-22 Score=217.49 Aligned_cols=155 Identities=10% Similarity=0.060 Sum_probs=113.2
Q ss_pred CCCCccccCCCc-eeccCCCCCCCcceeccCCCCc-ccee---------ee---eeEEEEecCCCeEEEeeccCCeEEEe
Q psy682 115 PPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS-QKLR---------VR---HNCFVTTVDSRFLLACGFWDNSFREP 180 (330)
Q Consensus 115 ~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~-~~~~---------~~---~~~~~~spDg~~i~asg~~D~tirl~ 180 (330)
.+.++.|+||+. +++++.+++..+|....+.... ..+. .| ..+++|+|||++ +|+|+.|++|||
T Consensus 437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~-LAsgs~DgtV~l- 514 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE-LAVSIETGDVVL- 514 (902)
T ss_dssp CCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE-EEEEETTSCEEE-
T ss_pred CCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe-EEEEecCcEEEE-
Confidence 456789999999 7765666655555433221100 1111 22 468999999998 666779999999
Q ss_pred eeccccc---------------------------------------------ccccccCCCCcE--E--Ee-HHHHHhhh
Q psy682 181 FTTMYLA---------------------------------------------LQEGKFDHPNRL--F--SS-ISLAWKNC 210 (330)
Q Consensus 181 w~~~~g~---------------------------------------------l~~~l~gH~d~V--i--aS-t~~lW~~S 210 (330)
|++++++ ++.++.+|.+.| + +. -..+ +
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lA---s 591 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVG---I 591 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEE---E
T ss_pred EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEE---E
Confidence 9998763 256788899988 2 22 2223 8
Q ss_pred ccCCCcEEEEcccCcee------eecC-CCCCCCCCcEEEeC-----CCc---cEEEEcc-CCeEEEEee----CCceee
Q psy682 211 QRDTSDVKVHTTFGDLL------RSLD-PPSGFASPESVVMS-----REG---VIVVNYE-RGHIAAFTM----NGNRLR 270 (330)
Q Consensus 211 gS~Dgtvkl~~~~G~ll------~tL~-~h~~~~~v~~v~fS-----~dG---~~l~s~~-~~~~~~~s~----nG~~la 270 (330)
||.||+|+||+.++..+ +.+. +|.+ .|++|+|| ||| +.|++|+ ++++++|.+ +|+.++
T Consensus 592 gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~--~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~ 669 (902)
T 2oaj_A 592 AYAAGSLMLIDRRGPAIIYMENIREISGAQSA--CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV 669 (902)
T ss_dssp EETTSEEEEEETTTTEEEEEEEGGGTCSSCCC--CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE
T ss_pred EeCCCcEEEEECCCCeEEEEeehhHhcccccc--ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE
Confidence 99999999999876533 3564 8988 99999999 885 8999995 889999996 899888
Q ss_pred eccCcc
Q psy682 271 HESHND 276 (330)
Q Consensus 271 s~~~~~ 276 (330)
.+..+.
T Consensus 670 ~~~~~~ 675 (902)
T 2oaj_A 670 QLMDIT 675 (902)
T ss_dssp EEEEEE
T ss_pred EecCce
Confidence 876553
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.89 E-value=6.2e-23 Score=189.16 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=141.7
Q ss_pred cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC
Q psy682 20 LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY 99 (330)
Q Consensus 20 l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~ 99 (330)
+.++.+|.+.|++++|||||++ +||++.|++|++|+.++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~-----------------------------------------las~s~D~~v~iw~~~~ 40 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKR-----------------------------------------MATCSSDKTIKIFEVEG 40 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSE-----------------------------------------EEEEETTSCEEEEEBCS
T ss_pred ceeccCCcCceEEEEECCCCCE-----------------------------------------EEEEeCCCEEEEEecCC
Confidence 3456788888888888887776 48888999999999864
Q ss_pred C---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCC-CCccceeee---eeEEEEecC--CCeE
Q psy682 100 A---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVR---HNCFVTTVD--SRFL 167 (330)
Q Consensus 100 ~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~spD--g~~i 167 (330)
. .+.++.+|.+ ++.++.|+++ +. +++++.++...+|....+. .....+..| ..+++|+|+ |++
T Consensus 41 ~~~~~~~~l~gH~~----~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~- 115 (297)
T 2pm7_B 41 ETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPM- 115 (297)
T ss_dssp SCBCCCEEECCCSS----CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSE-
T ss_pred CCcEEEEEEccccC----CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcE-
Confidence 3 3566779984 6778999864 66 6665555544444332111 011123333 368899998 777
Q ss_pred EEeeccCCeEEEeeecccccc--cccccCCCCcEE----EeH---------------HHHHhhhccCCCcEEEEcc-cCc
Q psy682 168 LACGFWDNSFREPFTTMYLAL--QEGKFDHPNRLF----SSI---------------SLAWKNCQRDTSDVKVHTT-FGD 225 (330)
Q Consensus 168 ~asg~~D~tirl~w~~~~g~l--~~~l~gH~d~Vi----aSt---------------~~lW~~SgS~Dgtvkl~~~-~G~ 225 (330)
+++|+.|++||+ |++.+++. ...+.+|...|. ... ..+ +||.||+|+||+. +++
T Consensus 116 l~s~s~d~~v~~-wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~---sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 116 LLVASSDGKVSV-VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV---TGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEETTSEEEE-EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE---EEETTSCEEEEEEETTT
T ss_pred EEEEECCCcEEE-EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE---EEcCCCcEEEEEEcCCC
Confidence 566778999999 99976532 456778988872 111 233 8999999999976 455
Q ss_pred ----eeeecCCCCCCCCCcEEEeCCCc---cEEEEcc-CCeEEEEeeCC
Q psy682 226 ----LLRSLDPPSGFASPESVVMSREG---VIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 226 ----ll~tL~~h~~~~~v~~v~fS~dG---~~l~s~~-~~~~~~~s~nG 266 (330)
++++|.+|.+ .|.+|+|+|+| ++||+++ ++++++|.++.
T Consensus 192 ~~~~~~~~l~~H~~--~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 192 QTYVLESTLEGHSD--WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp TEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ceEEEEEEecCCCC--ceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 7889999999 99999999995 8999985 88999998875
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=187.24 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=165.5
Q ss_pred CcccCCCcEEEeecccccccceee-------------cCCCceeEEEeCC-CCCcCcceeeee-----------------
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFP-------------SCDSSVRSLALSH-DQKYSPMMFSTV----------------- 49 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~-------------gH~~~V~svafSp-dg~~~~l~~~~~----------------- 49 (330)
|+|+.||+|++|++.+++....+. +|...|.+++|+| ++++ +.++
T Consensus 60 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~s~~~d~~i~iwd~~~~~~~ 135 (408)
T 4a11_B 60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM----FTSSSFDKTLKVWDTNTLQTA 135 (408)
T ss_dssp EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC----EEEEETTSEEEEEETTTTEEE
T ss_pred EEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE----EEEEeCCCeEEEeeCCCCccc
Confidence 578999999999999988877775 6999999999999 5555 2222
Q ss_pred ----cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC
Q psy682 50 ----LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD 124 (330)
Q Consensus 50 ----~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D 124 (330)
+...+..+.|+|.++ +....++++.++.|++|+..... +....+|. ..+.++.|+||
T Consensus 136 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~v~~~~~~~~ 197 (408)
T 4a11_B 136 DVFNFEETVYSHHMSPVST--------------KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR----QEILAVSWSPR 197 (408)
T ss_dssp EEEECSSCEEEEEECSSCS--------------SCCEEEEEESSSSEEEEESSSSCCCEEECCCC----SCEEEEEECSS
T ss_pred eeccCCCceeeeEeecCCC--------------CCcEEEEEcCCCeEEEEeCCCcceeeeecCCC----CcEEEEEECCC
Confidence 223333344443222 22345778888899999987554 45555786 46778999999
Q ss_pred Cc--eeccCCCCCCCcceeccCCCC--cc------------------ceeeeeeEEEEecCCCeEEEeeccCCeEEEeee
Q psy682 125 PI--LTHPTSNNNAPVPKRHLGDNF--SQ------------------KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFT 182 (330)
Q Consensus 125 ~~--l~~~s~~~~~~~~~~~l~~~~--~~------------------~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~ 182 (330)
+. +++++.++. +..+.+...- .. .......+++|+||+++|++ |+.|++|++ |+
T Consensus 198 ~~~ll~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~v-wd 273 (408)
T 4a11_B 198 YDYILATASADSR--VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT-VGTDNRMRL-WN 273 (408)
T ss_dssp CTTEEEEEETTSC--EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE-EETTSCEEE-EE
T ss_pred CCcEEEEEcCCCc--EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE-ecCCCeEEE-EE
Confidence 97 444334333 3344332110 00 01122358889999999555 557999999 99
Q ss_pred cccccccccccCCCCcE--------EEe---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccE
Q psy682 183 TMYLALQEGKFDHPNRL--------FSS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI 250 (330)
Q Consensus 183 ~~~g~l~~~l~gH~d~V--------iaS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~ 250 (330)
+.+++......++.... ... ...+ .++.||+|++|+. +|++++++.+|.+ .|.+++|+|||+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 348 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV---FVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCCVFQSNFQE 348 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE---EEEETTEEEEEETTTCCEEEEECCCSS--CEEEEEEETTTTE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEE---EEecCCEEEEEECcCCcceeeeccCCC--eEEEEEEcCCCCE
Confidence 99888766665543221 111 1111 5678999999975 7999999999999 9999999999999
Q ss_pred EEEcc-CCeEEEEeeCCc
Q psy682 251 VVNYE-RGHIAAFTMNGN 267 (330)
Q Consensus 251 l~s~~-~~~~~~~s~nG~ 267 (330)
||+++ ++.++.|.++..
T Consensus 349 l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEETTSCEEEEEECC-
T ss_pred EEEECCCCeEEEEeCCCC
Confidence 99995 889999987643
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=1e-22 Score=185.29 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=165.0
Q ss_pred CcccCCCcEEEeecccccccce---ee--cCCCceeEEEeCCCCCc------------------C--cceeeeecCccEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLYA---FP--SCDSSVRSLALSHDQKY------------------S--PMMFSTVLDDVCM 55 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~t---l~--gH~~~V~svafSpdg~~------------------~--~l~~~~~~~d~~~ 55 (330)
|+|+ ||+|++|++.+++.... +. +|...|.+++|+|||+. . .......|...+.
T Consensus 67 ~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 67 YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145 (337)
T ss_dssp EEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred EEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE
Confidence 3566 99999999987764433 33 89999999999999986 0 1122346677778
Q ss_pred EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682 56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN 133 (330)
Q Consensus 56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~ 133 (330)
.+.|+|+++.+ ++++.++.|++|+..... .....+|. ..+.++.|+||+. +++++.+
T Consensus 146 ~~~~~~~~~~l-----------------~~~~~dg~v~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 146 ALAISPDSKVC-----------------FSCCSDGNIAVWDLHNQTLVRQFQGHT----DGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp EEEECTTSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCEE-----------------EEEeCCCcEEEEeCCCCceeeeeeccc----CceEEEEECCCCCEEEEEecC
Confidence 88888888764 677788899999987554 44555776 3677899999998 5543333
Q ss_pred CCCCcceeccCCC-Ccccee--eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HH
Q psy682 134 NNAPVPKRHLGDN-FSQKLR--VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--IS 204 (330)
Q Consensus 134 ~~~~~~~~~l~~~-~~~~~~--~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~ 204 (330)
+ .+..+.+... ....+. ....+++++||+++|+ +|+.|+.|++ |++.+++.. .+.+|...|. .. ..
T Consensus 205 g--~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~i~~-~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 N--TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA-VGMESSNVEV-LHVNKPDKY-QLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp S--EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE-EEETTSCEEE-EETTSSCEE-EECCCSSCEEEEEECTTSSE
T ss_pred C--cEEEEECCCCceEeeecCCCceEEEEECCCCCEEE-EEcCCCcEEE-EECCCCCeE-EEcCCccceeEEEECCCCCE
Confidence 3 3334443221 001111 1125788999999954 5668999999 999877654 6778888872 21 33
Q ss_pred HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682 205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~ 264 (330)
.+ +++.||+|++|+. +|+.+..+ .|.. .|.+++|+|||+.|++++ ++.++.|.+
T Consensus 280 l~---~~~~dg~i~~~~~~~~~~~~~~-~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 280 FV---STGKDNLLNAWRTPYGASIFQS-KESS--SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE---EEETTSEEEEEETTTCCEEEEE-ECSS--CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EE---EecCCCcEEEEECCCCeEEEEe-cCCC--cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 33 8999999999976 67777554 4556 899999999999999884 888999874
No 68
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.89 E-value=9.1e-23 Score=186.76 Aligned_cols=238 Identities=12% Similarity=0.131 Sum_probs=162.8
Q ss_pred cccCCCcEEEee----cccccccceeecCCCceeEEEeCCC-CCc-----------------------CcceeeeecCcc
Q psy682 2 SGGDKGIVEVWR----TFNLALLYAFPSCDSSVRSLALSHD-QKY-----------------------SPMMFSTVLDDV 53 (330)
Q Consensus 2 sgs~d~~V~lW~----~~~g~~l~tl~gH~~~V~svafSpd-g~~-----------------------~~l~~~~~~~d~ 53 (330)
||.+.|+..++- .++.++..||+||.+.|++|+|+|+ +++ .+...+.+|.+.
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC
Confidence 556667655542 2345677789999999999999998 454 012234577888
Q ss_pred EEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eeccC
Q psy682 54 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPT 131 (330)
Q Consensus 54 ~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s 131 (330)
|..+.|+||++.+ ++++.|+.|++|+.......... .+. .......+++++. +++++
T Consensus 89 V~~~~~s~dg~~l-----------------~s~~~d~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~s~s 147 (340)
T 4aow_A 89 VSDVVISSDGQFA-----------------LSGSWDGTLRLWDLTTGTTTRRFVGHT----KDVLSVAFSSDNRQIVSGS 147 (340)
T ss_dssp EEEEEECTTSSEE-----------------EEEETTSEEEEEETTTTEEEEEEECCS----SCEEEEEECTTSSCEEEEE
T ss_pred EEEEEECCCCCEE-----------------EEEcccccceEEeecccceeeeecCCC----CceeEEEEeecCccceeec
Confidence 8888888888864 88889999999999766544333 332 3455677888888 55433
Q ss_pred CCCCCCcceeccCCCCcc--ceeee---eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccccCCCCcE--EE-e
Q psy682 132 SNNNAPVPKRHLGDNFSQ--KLRVR---HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS-S 202 (330)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~--~~~~~---~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia-S 202 (330)
.++ .+..+.+...... ....+ ..+++|++++. .++++++.|++||+ |++.+++++..+.+|.+.| ++ +
T Consensus 148 ~d~--~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i-~d~~~~~~~~~~~~h~~~v~~~~~s 224 (340)
T 4aow_A 148 RDK--TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV-WNLANCKLKTNHIGHTGYLNTVTVS 224 (340)
T ss_dssp TTS--CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE-EETTTTEEEEEECCCSSCEEEEEEC
T ss_pred CCC--eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE-EECCCCceeeEecCCCCcEEEEEEC
Confidence 333 3333333221110 11111 24677887754 24667778999999 9999999999999999988 22 2
Q ss_pred ---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCcee
Q psy682 203 ---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL 269 (330)
Q Consensus 203 ---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~l 269 (330)
...+ +|+.||+|+||+. +++.++.+.++. .|.+++|+|++.+++.+.++.+++|..++..+
T Consensus 225 ~~~~~l~---s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 225 PDGSLCA---SGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp TTSSEEE---EEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred CCCCEEE---EEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 3333 8999999999976 688899998763 69999999999999999999999999877654
No 69
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=8e-23 Score=198.19 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=167.6
Q ss_pred CcccCCCcEEEeeccc----------ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee
Q psy682 1 MSGGDKGIVEVWRTFN----------LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA 70 (330)
Q Consensus 1 asgs~d~~V~lW~~~~----------g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~ 70 (330)
|+|+.||+|++|++.+ ++.+.++.+|...|.+++|+|++..
T Consensus 145 at~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~----------------------------- 195 (430)
T 2xyi_A 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG----------------------------- 195 (430)
T ss_dssp EEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-----------------------------
T ss_pred EEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-----------------------------
Confidence 5788999999999986 6778888999999999999888763
Q ss_pred ccceeccCCcEEEEEcCCcceEEEeCCCCCC--------cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcce
Q psy682 71 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA--------SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPK 140 (330)
Q Consensus 71 ~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~--------~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~ 140 (330)
.+++++.+++|++|+.+... .....+|. ..+.++.|+| ++. +++++. +..+..
T Consensus 196 -----------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~l~s~~~--dg~i~i 258 (430)
T 2xyi_A 196 -----------YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT----AVVEDVAWHLLHESLFGSVAD--DQKLMI 258 (430)
T ss_dssp -----------EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS----SCEEEEEECSSCTTEEEEEET--TSEEEE
T ss_pred -----------eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC----CCEeeeEEeCCCCCEEEEEeC--CCeEEE
Confidence 25888999999999997632 23344776 3677899999 555 444333 333444
Q ss_pred eccCCC----Cccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEE----Ee---HHH
Q psy682 141 RHLGDN----FSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLF----SS---ISL 205 (330)
Q Consensus 141 ~~l~~~----~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~Vi----aS---t~~ 205 (330)
+.+... ....+..+ ..+++|+|++++++++|+.|++|++ |++.+ ++.+..+.+|...|. .. .+.
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~v-wd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEE-EETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEE-EeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 544322 22233333 2689999999987888889999999 99987 567888889999882 22 334
Q ss_pred HHhhhccCCCcEEEEcccC---------------ceeeecCCCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeCCce
Q psy682 206 AWKNCQRDTSDVKVHTTFG---------------DLLRSLDPPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMNGNR 268 (330)
Q Consensus 206 lW~~SgS~Dgtvkl~~~~G---------------~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~nG~~ 268 (330)
+ +|+.||+|+||+... +++..+.+|.+ .|+.++|+|+|. +||+++ ++.+++|.++...
T Consensus 338 ~---s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 338 A---SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp E---EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred E---EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 4 899999999998743 88999999988 999999999999 888874 8899999998776
Q ss_pred eeeccCccccccc
Q psy682 269 LRHESHNDNLQEL 281 (330)
Q Consensus 269 las~~~~~dVkEL 281 (330)
+.....+....||
T Consensus 413 ~~~~~~~~~~~e~ 425 (430)
T 2xyi_A 413 YNDEEPEIPASEL 425 (430)
T ss_dssp HCC----------
T ss_pred ccCCCccCChhhc
Confidence 6654444333344
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.89 E-value=6.9e-23 Score=188.59 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=164.4
Q ss_pred cccCCCcEEEeecccccccceeec-----CCCceeEEEeCCCCC----c------------------CcceeeeecCccE
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPS-----CDSSVRSLALSHDQK----Y------------------SPMMFSTVLDDVC 54 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~g-----H~~~V~svafSpdg~----~------------------~~l~~~~~~~d~~ 54 (330)
+++.++.|++|++.+++.+..+.. |...|.+++|+|++. + ..+..+.+|.+.|
T Consensus 39 ~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i 118 (366)
T 3k26_A 39 ATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI 118 (366)
T ss_dssp EEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE
T ss_pred EECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcE
Confidence 345677999999998888888765 557899999999943 4 2233355788889
Q ss_pred EEEEeCC-CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC----CCCCCCCCCCCCCccccCCCc-ee
Q psy682 55 MSLKFPS-NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS----PSYAETPGSPPGNLPLTLDPI-LT 128 (330)
Q Consensus 55 ~~v~Fs~-~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~----~~h~~~~~~~~~~l~fs~D~~-l~ 128 (330)
..++|+| ++..+ ++++.|++|++|+......... .+|. ..+.++.|+||+. ++
T Consensus 119 ~~~~~~~~~~~~l-----------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 119 NELKFHPRDPNLL-----------------LSVSKDHALRLWNIQTDTLVAIFGGVEGHR----DEVLSADYDLLGEKIM 177 (366)
T ss_dssp EEEEECSSCTTEE-----------------EEEETTSCEEEEETTTTEEEEEECSTTSCS----SCEEEEEECTTSSEEE
T ss_pred EEEEECCCCCCEE-----------------EEEeCCCeEEEEEeecCeEEEEeccccccc----CceeEEEECCCCCEEE
Confidence 9999999 77764 7888899999999976553333 4676 4677899999998 55
Q ss_pred ccCCCCCCCcceeccCCC-Cccc-------------------------------eeeeeeEEEEecCCCeEEEeeccCCe
Q psy682 129 HPTSNNNAPVPKRHLGDN-FSQK-------------------------------LRVRHNCFVTTVDSRFLLACGFWDNS 176 (330)
Q Consensus 129 ~~s~~~~~~~~~~~l~~~-~~~~-------------------------------~~~~~~~~~~spDg~~i~asg~~D~t 176 (330)
+++.++ .+..+.+... .... ......+++++ +++ +++++.|++
T Consensus 178 ~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~~~~~d~~ 252 (366)
T 3k26_A 178 SCGMDH--SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL-ILSKSCENA 252 (366)
T ss_dssp EEETTS--CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE-EEEECSSSE
T ss_pred EecCCC--CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE-EEEEecCCE
Confidence 534433 3344443211 0000 11112477777 667 556668999
Q ss_pred EEEeeecccccc--------------cccccCCCCcE----EEe----HHHHHhhhccCCCcEEEEccc-Cc----eeee
Q psy682 177 FREPFTTMYLAL--------------QEGKFDHPNRL----FSS----ISLAWKNCQRDTSDVKVHTTF-GD----LLRS 229 (330)
Q Consensus 177 irl~w~~~~g~l--------------~~~l~gH~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~~-G~----ll~t 229 (330)
|++ |++.+++. +..+.+|...| +.. ...+ +|+.||+|++|+.. |+ .+.+
T Consensus 253 i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 253 IVC-WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA---LGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp EEE-EEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE---EECTTSCEEEEECCSSSGGGCEEEE
T ss_pred EEE-EeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE---EEecCCcEEEEECCCCCCccccceE
Confidence 999 99977643 55666666554 121 2223 89999999999874 54 5558
Q ss_pred cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
+.+|.....|.+++|+|||+.||+++ ++.+++|.++
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99983222899999999999999995 8899999864
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.88 E-value=1.1e-22 Score=196.48 Aligned_cols=236 Identities=13% Similarity=0.141 Sum_probs=156.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCC--------CCc--------CcceeeeecCccEEEEEeCCCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD--------QKY--------SPMMFSTVLDDVCMSLKFPSNSP 64 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpd--------g~~--------~~l~~~~~~~d~~~~v~Fs~~~~ 64 (330)
|+|+.||+|++|++.+|+.+.++.+|.+.|++++|+++ |.+ ..+....+|...|..+.|+ +.
T Consensus 133 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence 57899999999999999999999999999999999852 111 1111222444444444442 12
Q ss_pred eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceec
Q psy682 65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRH 142 (330)
Q Consensus 65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~ 142 (330)
..++++.|++|++|+..... +....+|.. .+.++.+ |+. +++++.++...++...
T Consensus 211 -----------------~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~--~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 211 -----------------RVVSGSRDATLRVWDIETGQCLHVLMGHVA----AVRCVQY--DGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp -----------------EEEEEETTSEEEEEESSSCCEEEEEECCSS----CEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred -----------------EEEEEeCCCEEEEEECCCCcEEEEEcCCcc----cEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence 24777788889999986544 444457763 5556777 666 5554444433333222
Q ss_pred cCCCCccceeeeee-EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe-----HHHHH
Q psy682 143 LGDNFSQKLRVRHN-CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS-----ISLAW 207 (330)
Q Consensus 143 l~~~~~~~~~~~~~-~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS-----t~~lW 207 (330)
.+.. ..++..+.. ..++..|++++ ++|+.|++|++ |++.+++++..+.+|...+ +++ ++++|
T Consensus 268 ~~~~-~~~~~~~~~~v~~~~~~~~~l-~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 268 TETC-LHTLQGHTNRVYSLQFDGIHV-VSGSLDTSIRV-WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp GTEE-EEEECCCSSCEEEEEECSSEE-EEEETTSCEEE-EETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCcE-eEEecCCCCceEEEEECCCEE-EEEeCCCeEEE-EECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 2111 122333321 22233388874 44557888998 9988888888888888776 222 66666
Q ss_pred hh------------------------------hccCCCcEEEEcc-cCceeeec-----CCCCCCCCCcEEEeCCCccEE
Q psy682 208 KN------------------------------CQRDTSDVKVHTT-FGDLLRSL-----DPPSGFASPESVVMSREGVIV 251 (330)
Q Consensus 208 ~~------------------------------SgS~Dgtvkl~~~-~G~ll~tL-----~~h~~~~~v~~v~fS~dG~~l 251 (330)
+. +|+.||+|++|+. +|++++++ .+|.+ .|.+++|+|+|..+
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG--VVWRIRASNTKLVC 422 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC--EEEEEEECSSEEEE
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc--eEEEEEecCCEEEE
Confidence 65 8889999999975 68888888 45666 89999999999999
Q ss_pred EEcc-CCe----EEEEeeCC
Q psy682 252 VNYE-RGH----IAAFTMNG 266 (330)
Q Consensus 252 ~s~~-~~~----~~~~s~nG 266 (330)
|+++ +++ +..|+.+.
T Consensus 423 a~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEECSSSSSCCEEEEEECCC
T ss_pred EEcccCCCCccEEEEEECCC
Confidence 8885 554 77776554
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.88 E-value=2.9e-22 Score=205.59 Aligned_cols=224 Identities=10% Similarity=0.082 Sum_probs=167.5
Q ss_pred cceeecCCCceeEEEeCCCCC-c---------------C--------cceeeeecCccEEEEEeCCCCCeeEeeecccee
Q psy682 20 LYAFPSCDSSVRSLALSHDQK-Y---------------S--------PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVT 75 (330)
Q Consensus 20 l~tl~gH~~~V~svafSpdg~-~---------------~--------~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~ 75 (330)
...|++|.+.|++|+|+|++. + . ....+.+|...|..+.|+|+++.+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l--------- 445 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA--------- 445 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE---------
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE---------
Confidence 346899999999999999864 3 0 012345788888889999988875
Q ss_pred ccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc----c
Q psy682 76 LHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS----Q 149 (330)
Q Consensus 76 ~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~----~ 149 (330)
+|++.|++|++|+...+. ...+.+|.+ .+.++.|+||+. +++++.++.. ..|.+..... .
T Consensus 446 --------~sgs~Dg~v~vwd~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~D~~i--~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 446 --------LSGSWDGELRLWDLAAGVSTRRFVGHTK----DVLSVAFSLDNRQIVSASRDRTI--KLWNTLGECKYTISE 511 (694)
T ss_dssp --------EEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCE--EEECTTSCEEEEECS
T ss_pred --------EEEeCCCcEEEEECCCCcceeEEeCCCC----CEEEEEEeCCCCEEEEEeCCCEE--EEEECCCCcceeecc
Confidence 888999999999987554 455568974 677899999998 6654444433 3444322110 0
Q ss_pred ceeee---eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHHHhhhccCCCcEEE
Q psy682 150 KLRVR---HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKV 219 (330)
Q Consensus 150 ~~~~~---~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl 219 (330)
....| ..|++|+|++. .++++|+.|++||+ |++.++++...+.+|...|. + + ...+ |||.||+|+|
T Consensus 512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v-wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~---sg~~Dg~i~i 587 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV-WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA---SGGKDGVVLL 587 (694)
T ss_dssp STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSEEE---EEETTSBCEE
T ss_pred CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEE-EECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE---EEeCCCeEEE
Confidence 11122 36889999973 24667779999999 99999999999999999882 1 2 3334 8999999999
Q ss_pred Ecc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCce-eeecc
Q psy682 220 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR-LRHES 273 (330)
Q Consensus 220 ~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~-las~~ 273 (330)
|+. +|+.++++..+ . .|.+++|||+|.+|++++++.+++|...... +..+.
T Consensus 588 wd~~~~~~~~~~~~~-~--~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 588 WDLAEGKKLYSLEAN-S--VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp EETTTTEEEECCBCS-S--CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred EECCCCceEEEecCC-C--cEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence 976 79999998865 3 6999999999999999988889999876543 34443
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.88 E-value=1.2e-21 Score=179.86 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=164.4
Q ss_pred ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682 17 LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 78 (330)
Q Consensus 17 g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~ 78 (330)
.++..++.||...|++++|+|||+. .......+|...|..++|+|+++.+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l------------ 80 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL------------ 80 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE------------
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE------------
Confidence 4567789999999999999999987 1122345788888999999998875
Q ss_pred CcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeee
Q psy682 79 PSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH 155 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~ 155 (330)
++++.|++|++|+.+... +....+|. ..+.++.|+||+. +++++.++. +..|.+.. .....+..+.
T Consensus 81 -----~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 81 -----VSASDDKTLKIWDVSSGKCLKTLKGHS----NYVFCCNFNPQSNLIVSGSFDES--VRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp -----EEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETTSC--EEEEETTTCCEEEEECCCS
T ss_pred -----EEECCCCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEeCCCc--EEEEECCCCEEEEEecCCC
Confidence 788889999999987655 44555886 4677899999998 555444443 34444321 1122333332
Q ss_pred ---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC-CCCcE--EE-e---HHHHHhhhccCCCcEEEEcc-cC
Q psy682 156 ---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD-HPNRL--FS-S---ISLAWKNCQRDTSDVKVHTT-FG 224 (330)
Q Consensus 156 ---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-H~d~V--ia-S---t~~lW~~SgS~Dgtvkl~~~-~G 224 (330)
.+++++||++++ ++|+.|++|++ |++.+++.+..+.. |...+ ++ + ...+ +|+.||+|++|+. +|
T Consensus 150 ~~v~~~~~~~~~~~l-~~~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 150 DPVSAVHFNRDGSLI-VSSSYDGLCRI-WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL---AATLDNTLKLWDYSKG 224 (312)
T ss_dssp SCEEEEEECTTSSEE-EEEETTSCEEE-EETTTCCEEEEECCSSCCCEEEEEECTTSSEEE---EEETTTEEEEEETTTT
T ss_pred CcEEEEEEcCCCCEE-EEEeCCCcEEE-EECCCCceeeEEeccCCCceEEEEECCCCCEEE---EEcCCCeEEEEECCCC
Confidence 578899999984 55668999999 99998887766644 44444 11 1 2233 8999999999976 79
Q ss_pred ceeeecCCCCCCCCCcEEEe-CCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682 225 DLLRSLDPPSGFASPESVVM-SREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 225 ~ll~tL~~h~~~~~v~~v~f-S~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~ 275 (330)
+.++++.+|..........| .++|+.|++++ ++.+++|.++ ++.+..+..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 99999999977212222334 47899999985 8899999875 5555666544
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5e-23 Score=197.31 Aligned_cols=243 Identities=10% Similarity=0.078 Sum_probs=163.3
Q ss_pred CcccCCCcEEEeeccc---ccccc-eee-cCCCceeEEEeCCCCCcCcceeeeecCc-----------------------
Q psy682 1 MSGGDKGIVEVWRTFN---LALLY-AFP-SCDSSVRSLALSHDQKYSPMMFSTVLDD----------------------- 52 (330)
Q Consensus 1 asgs~d~~V~lW~~~~---g~~l~-tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d----------------------- 52 (330)
|||+.||+|+||++.+ ++... .+. +|...|++|+|+|+++. +..+..|
T Consensus 80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 155 (437)
T 3gre_A 80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA----FAVSSKDGQIIVLKVNHYQQESEVKFLNCE 155 (437)
T ss_dssp EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE----EEEEETTSEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE----EEEEeCCCEEEEEEeccccCCceeeccccc
Confidence 5899999999999977 44221 333 69999999999999887 3333332
Q ss_pred cEEEEEeCCC---CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCC--CCCCCCCCCCCccccCCCc
Q psy682 53 VCMSLKFPSN---SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPS--YAETPGSPPGNLPLTLDPI 126 (330)
Q Consensus 53 ~~~~v~Fs~~---~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~--h~~~~~~~~~~l~fs~D~~ 126 (330)
.+..+.|+|+ ..++.+. ....+++-.+++++.+++|++|+..... +.++.+ |. ..+.++.|+||+.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~----~~v~~~~~s~~~~ 227 (437)
T 3gre_A 156 CIRKINLKNFGKNEYAVRMR----AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH----GAVSSICIDEECC 227 (437)
T ss_dssp EEEEEEGGGGSSCCCEEEEE----EEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGG----CCEEEEEECTTSC
T ss_pred eeEEEEccCcccccCceEEE----EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC----CceEEEEECCCCC
Confidence 2233334331 1111111 0133556778999999999999997655 344445 65 4678899999999
Q ss_pred -eeccCCCCCCCcceeccCCCCcccee----eeeeEE----EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC
Q psy682 127 -LTHPTSNNNAPVPKRHLGDNFSQKLR----VRHNCF----VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN 197 (330)
Q Consensus 127 -l~~~s~~~~~~~~~~~l~~~~~~~~~----~~~~~~----~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d 197 (330)
+++++.++...+|..+.+... .++. ....++ +|+||+++ +++|+.|++|++ |++.+++.++.+.+|..
T Consensus 228 ~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~s~~~~~-l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 228 VLILGTTRGIIDIWDIRFNVLI-RSWSFGDHAPITHVEVCQFYGKNSVI-VVGGSSKTFLTI-WNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEEEETTSCEEEEETTTTEEE-EEEBCTTCEEEEEEEECTTTCTTEEE-EEEESTTEEEEE-EETTTTEEEEEEESSSS
T ss_pred EEEEEcCCCeEEEEEcCCccEE-EEEecCCCCceEEEEeccccCCCccE-EEEEcCCCcEEE-EEcCCCcEEEEEEcCCC
Confidence 665444443333322222211 1121 112456 44567877 666778999999 99999998888888765
Q ss_pred cEE-----------------------------Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCC-------------
Q psy682 198 RLF-----------------------------SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP------------- 232 (330)
Q Consensus 198 ~Vi-----------------------------aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~------------- 232 (330)
.+. .+ ...+ +|+.||+|++|+. +|+.++++.+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~---s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (437)
T 3gre_A 305 QPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILL---TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV 381 (437)
T ss_dssp CCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEE---EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEE
T ss_pred CCccceecccccccccceecccccCCceEEEEECCceEEE---ecCCCCeEEEEECCCcccceEEecccccCceEEEEEe
Confidence 441 00 1122 8999999999976 7888888887
Q ss_pred ------------------------CCCCCCCcEEEeCCC--ccEEEEcc-CCeEEEEe
Q psy682 233 ------------------------PSGFASPESVVMSRE--GVIVVNYE-RGHIAAFT 263 (330)
Q Consensus 233 ------------------------h~~~~~v~~v~fS~d--G~~l~s~~-~~~~~~~s 263 (330)
|.+ .|++|+|+++ +.+||+|+ +|.|++|+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~--~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 382 TANLTMLLRKMKRTSTHSVDDSLYHHD--IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ETTEEEEEEECC-------------CC--CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecceEEEEEecccccccccCccccccc--ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 566 8999999988 88999985 88888884
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-22 Score=186.49 Aligned_cols=211 Identities=12% Similarity=0.070 Sum_probs=155.6
Q ss_pred CcccCCCcEEEeecc--cccccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTF--NLALLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~--~g~~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
|+|+.||+|++|++. +++.+.++.+|...|++++|+|+ +++
T Consensus 27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~----------------------------------- 71 (379)
T 3jrp_A 27 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----------------------------------- 71 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-----------------------------------
T ss_pred EEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCE-----------------------------------
Confidence 578899999999998 67888899999999999999986 554
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCC---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC--C-
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN--F- 147 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~--~- 147 (330)
+++++.|++|++|+.+.+ ......+|. ..+.++.|+|| +. +++++.++. +..+.+... .
T Consensus 72 ------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~d~~--i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 72 ------LASCSYDGKVLIWKEENGRWSQIAVHAVHS----ASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTS 139 (379)
T ss_dssp ------EEEEETTSCEEEEEEETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTSE--EEEEECCTTSCCC
T ss_pred ------EEEeccCCEEEEEEcCCCceeEeeeecCCC----cceEEEEeCCCCCCCEEEEecCCCc--EEEEecCCCCcee
Confidence 478888899999999766 355556776 46778999999 76 555444443 334443222 1
Q ss_pred ccceeee---eeEEEEec-------------CCCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEE----EeH
Q psy682 148 SQKLRVR---HNCFVTTV-------------DSRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLF----SSI 203 (330)
Q Consensus 148 ~~~~~~~---~~~~~~sp-------------Dg~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Vi----aSt 203 (330)
...+..+ ..+++++| |+++ +++|+.|++|++ |++.+++ +...+.+|...|. ...
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 217 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI-WKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCE-EEEEETTSCEEE-EEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCE-EEEEeCCCeEEE-EEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence 1112222 25888999 6888 555668999999 9987654 5678889999882 212
Q ss_pred -----HHHHhhhccCCCcEEEEccc-Cc-----eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682 204 -----SLAWKNCQRDTSDVKVHTTF-GD-----LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN 265 (330)
Q Consensus 204 -----~~lW~~SgS~Dgtvkl~~~~-G~-----ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n 265 (330)
..+ +|+.||+|+||+.. |+ .+....+|.. .|.+++|+|||+.||++ .++.++.|..+
T Consensus 218 ~~~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 218 VLLRSYLA---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CSSSEEEE---EEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCeEE---EEeCCCEEEEEeCCCCCccceeeeeccccCCC--cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 233 89999999999874 32 2233334666 89999999999999987 58899999876
No 76
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.88 E-value=7.7e-23 Score=193.83 Aligned_cols=235 Identities=6% Similarity=-0.023 Sum_probs=169.6
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+++....+.+| ..+...+|+|||++ .......+|.+.|..++|+|+
T Consensus 72 ~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 150 (420)
T 3vl1_A 72 YKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS 150 (420)
T ss_dssp EEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT
T ss_pred EEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC
Confidence 47889999999999999999999888 66667789999987 111223478889999999999
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK 140 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~ 140 (330)
++.+ ++++.|++|++|+..... +..+.+|. ..+.++.|+||+. +++++.++.. ..
T Consensus 151 ~~~l-----------------~s~s~d~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d~~v--~i 207 (420)
T 3vl1_A 151 GEAL-----------------ISSSQDMQLKIWSVKDGSNPRTLIGHR----ATVTDIAIIDRGRNVLSASLDGTI--RL 207 (420)
T ss_dssp SSEE-----------------EEEETTSEEEEEETTTCCCCEEEECCS----SCEEEEEEETTTTEEEEEETTSCE--EE
T ss_pred CCEE-----------------EEEeCCCeEEEEeCCCCcCceEEcCCC----CcEEEEEEcCCCCEEEEEcCCCcE--EE
Confidence 9975 788889999999987544 55556887 4677899999998 6654444433 33
Q ss_pred eccCCC-Cccceee---------------------------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682 141 RHLGDN-FSQKLRV---------------------------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK 192 (330)
Q Consensus 141 ~~l~~~-~~~~~~~---------------------------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l 192 (330)
|.+... ....+.. ...+++|+|||++ +++|+.|++|++ |++.+++....+
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i-~d~~~~~~~~~~ 285 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITV-HNVFSKEQTIQL 285 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEE-EETTTCCEEEEE
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEE-EECCCCceeEEc
Confidence 433211 1111111 1123456899988 555668999999 999888765555
Q ss_pred c-CCCCcEE----Ee--H-HHHHhhhccCCCcEEEEcc-cC-ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEE
Q psy682 193 F-DHPNRLF----SS--I-SLAWKNCQRDTSDVKVHTT-FG-DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAA 261 (330)
Q Consensus 193 ~-gH~d~Vi----aS--t-~~lW~~SgS~Dgtvkl~~~-~G-~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~ 261 (330)
. +|...|. .. . ..+ +|+.||+|++|+. +| +++.++.+|.+ ..|.++ ++++|+.|++++ ++.+++
T Consensus 286 ~~~~~~~v~~~~~~~~~~~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 286 PSKFTCSCNSLTVDGNNANYIY---AGYENGMLAQWDLRSPECPVGEFLINEG-TPINNV-YFAAGALFVSSGFDTSIKL 360 (420)
T ss_dssp CCTTSSCEEEEEECSSCTTEEE---EEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEE-EEETTEEEEEETTTEEEEE
T ss_pred ccccCCCceeEEEeCCCCCEEE---EEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEE-EeCCCCEEEEecCCccEEE
Confidence 4 5777772 22 2 444 8999999999986 45 45888888555 277777 456888888885 888999
Q ss_pred EeeCC
Q psy682 262 FTMNG 266 (330)
Q Consensus 262 ~s~nG 266 (330)
|.+..
T Consensus 361 w~~~~ 365 (420)
T 3vl1_A 361 DIISD 365 (420)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 98764
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=3.5e-22 Score=197.33 Aligned_cols=235 Identities=10% Similarity=0.065 Sum_probs=172.0
Q ss_pred CcccCCCcEEEeecccc--------cccceeecCCCceeEEEeCCCCCc--------------------CcceeeeecCc
Q psy682 1 MSGGDKGIVEVWRTFNL--------ALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDD 52 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g--------~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d 52 (330)
|+|+.||+|++|++.+| +.+.++.+|...|.+++|+|||+. ..+....+|.+
T Consensus 82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 161 (615)
T 1pgu_A 82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 161 (615)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCc
Confidence 57889999999999755 788899999999999999999986 11223447888
Q ss_pred cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC-Cc-eec
Q psy682 53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD-PI-LTH 129 (330)
Q Consensus 53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D-~~-l~~ 129 (330)
.+..+.|+|+++.+ .++++.+++|++|+..... +..+.+|.+. ...+.++.|+|| +. +++
T Consensus 162 ~v~~~~~~~~~~~~----------------l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 162 RINACHLKQSRPMR----------------SMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-GSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp CEEEEEECSSSSCE----------------EEEEETTTEEEEEETTTBEEEEEECSSSCT-TCCEEEEEECSTTCCEEEE
T ss_pred cEEEEEECCCCCcE----------------EEEEeCCCcEEEEeCCCcceeeeecccCCC-CceEEEEEECCCCCCEEEE
Confidence 99999999999832 4778889999999986554 4455577630 015778999999 88 555
Q ss_pred cCCCCCCCcceeccCCCCccce-e---ee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC----Cc
Q psy682 130 PTSNNNAPVPKRHLGDNFSQKL-R---VR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP----NR 198 (330)
Q Consensus 130 ~s~~~~~~~~~~~l~~~~~~~~-~---~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~----d~ 198 (330)
++.++...++....+.. ...+ . .+ ..+++|+ |+++|++ ++.|++|++ |++.+++++..+..|. ..
T Consensus 225 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DSQKFAT-VGADATIRV-WDVTTSKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp EETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SSSEEEE-EETTSEEEE-EETTTTEEEEEEECCTTCGGGC
T ss_pred EeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CCCEEEE-EcCCCcEEE-EECCCCcEEEEEcCCCCcccCc
Confidence 44444333332222221 1222 2 22 2578889 9998555 557999999 9999999988888873 33
Q ss_pred EE---Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682 199 LF---SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN 265 (330)
Q Consensus 199 Vi---aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n 265 (330)
+. .+ ...+ +|+.||+|++|+. +|+.++++.+|.+ .|.+++| |+ ++++ .++.+..|..+
T Consensus 301 ~~~~~~~~~~~l~---~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 301 QVGVVATGNGRII---SLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEEEEETTEEE---EEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred eeEEEeCCCCeEE---EEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 31 11 2233 8999999999976 5899999999998 9999999 88 5555 58888888765
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.87 E-value=4.4e-22 Score=192.32 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=160.5
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
|+|+.||+|++|++.+++.+.++.+|.+.|++++| |+++ ..+....+|.+.|..+.|+++
T Consensus 147 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 224 (435)
T 1p22_A 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224 (435)
T ss_dssp EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT
T ss_pred EEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC
Confidence 57899999999999999999999999999999999 5554 111122344444455554322
Q ss_pred CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc----ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCC
Q psy682 63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS----IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP 137 (330)
Q Consensus 63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~----~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~ 137 (330)
.+++++.|++|++|+...... ....+|.. .+.++.+ |+. +++++.++..
T Consensus 225 -------------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~~~~--~~~~l~s~~~dg~i- 278 (435)
T 1p22_A 225 -------------------MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----AVNVVDF--DDKYIVSASGDRTI- 278 (435)
T ss_dssp -------------------EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS----CEEEEEE--ETTEEEEEETTSEE-
T ss_pred -------------------EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC----cEEEEEe--CCCEEEEEeCCCeE-
Confidence 347888899999999976553 34457864 5566777 666 5554444433
Q ss_pred cceeccCC-CCccceeeeee-EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--Ee--HHHHHhhhc
Q psy682 138 VPKRHLGD-NFSQKLRVRHN-CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--SS--ISLAWKNCQ 211 (330)
Q Consensus 138 ~~~~~l~~-~~~~~~~~~~~-~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--aS--t~~lW~~Sg 211 (330)
..+.+.. ....++..+.. ..++..++++ +++|+.|++|++ |++.+|+++..+.+|.+.|. +- ...+ +|
T Consensus 279 -~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~g~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~~~~~l~---sg 352 (435)
T 1p22_A 279 -KVWNTSTCEFVRTLNGHKRGIACLQYRDRL-VVSGSSDNTIRL-WDIECGACLRVLEGHEELVRCIRFDNKRIV---SG 352 (435)
T ss_dssp -EEEETTTCCEEEEEECCSSCEEEEEEETTE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEECCSSEEE---EE
T ss_pred -EEEECCcCcEEEEEcCCCCcEEEEEeCCCE-EEEEeCCCeEEE-EECCCCCEEEEEeCCcCcEEEEEecCCEEE---EE
Confidence 3343321 12233443432 2223446777 555668999999 99999999999999999882 21 3333 89
Q ss_pred cCCCcEEEEcc-cCc---------eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682 212 RDTSDVKVHTT-FGD---------LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN 267 (330)
Q Consensus 212 S~Dgtvkl~~~-~G~---------ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~ 267 (330)
+.||+|++|+. +++ .++++.+|.+ .|.+++| ||..|++++ ++.++.|..+..
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 99999999986 344 8999999999 9999999 888899986 889999997754
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.87 E-value=3.6e-22 Score=190.34 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=166.6
Q ss_pred CcccCCCcEEEeeccc-c---cccceeecCCCceeEEEeCC-CCCc----------------C---------cceeeeec
Q psy682 1 MSGGDKGIVEVWRTFN-L---ALLYAFPSCDSSVRSLALSH-DQKY----------------S---------PMMFSTVL 50 (330)
Q Consensus 1 asgs~d~~V~lW~~~~-g---~~l~tl~gH~~~V~svafSp-dg~~----------------~---------~l~~~~~~ 50 (330)
++|+.||.|++|++.+ | +.+.++.+|.+.|++++|+| ++++ . ++....+|
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h 130 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence 3678999999999864 3 35667899999999999999 7766 1 23445578
Q ss_pred CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccC--CCCCCCCCCCCCCccccCCCc-
Q psy682 51 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQS--PSYAETPGSPPGNLPLTLDPI- 126 (330)
Q Consensus 51 ~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~--~~h~~~~~~~~~~l~fs~D~~- 126 (330)
.+.|..++|+|+++- ++++++.|++|++|+...+. ..+. .+|. ..+.++.|+||+.
T Consensus 131 ~~~v~~~~~~p~~~~----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQN----------------VLLSAGCDNVILVWDVGTGAAVLTLGPDVHP----DTIYSVDWSRDGAL 190 (402)
T ss_dssp SSCEEEEEECSSBTT----------------EEEEEETTSCEEEEETTTTEEEEEECTTTCC----SCEEEEEECTTSSC
T ss_pred CCeEEEEEECcCCCC----------------EEEEEcCCCEEEEEECCCCCccEEEecCCCC----CceEEEEECCCCCE
Confidence 888888888888742 24788889999999987655 3444 5676 4677899999998
Q ss_pred eeccCCCCCCCcceeccCCC-Cccce-eee----eeEEEEecCCCeEEEee---ccCCeEEEeeecccccc-cccc-cCC
Q psy682 127 LTHPTSNNNAPVPKRHLGDN-FSQKL-RVR----HNCFVTTVDSRFLLACG---FWDNSFREPFTTMYLAL-QEGK-FDH 195 (330)
Q Consensus 127 l~~~s~~~~~~~~~~~l~~~-~~~~~-~~~----~~~~~~spDg~~i~asg---~~D~tirl~w~~~~g~l-~~~l-~gH 195 (330)
+++++.++. +..+.+... ....+ ..+ ..+++|+||+++ +++| +.|++|++ |++.+++. +... .+|
T Consensus 191 l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~i-wd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 191 ICTSCRDKR--VRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVAL-WDTKHLEEPLSLQELDT 266 (402)
T ss_dssp EEEEETTSE--EEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEE-EETTBCSSCSEEEECCC
T ss_pred EEEEecCCc--EEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEE-EcCccccCCceEEeccC
Confidence 555344333 334443221 11122 222 257889999987 5566 68999999 99987664 2222 245
Q ss_pred CCcEE----Ee---HHHHHhhhccCCCcEEEEcc-cCce-eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 196 PNRLF----SS---ISLAWKNCQRDTSDVKVHTT-FGDL-LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 196 ~d~Vi----aS---t~~lW~~SgS~Dgtvkl~~~-~G~l-l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
...|. .. .+.+ +|+.||+|++|+. +++. ++.|..|.....|.+++|+|||.++++++ +.++.|....
T Consensus 267 ~~~v~~~~~s~~~~~l~~---~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~-~~~~~~~l~~ 342 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYL---CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKC-EIARFYKLHE 342 (402)
T ss_dssp CSSCEEEEEETTTTEEEE---EETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGT-EEEEEEEEET
T ss_pred CCceeEEEEcCCCCEEEE---EEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecc-eeEEEEEcCC
Confidence 55542 21 2222 7889999999976 4552 66666554223899999999999998754 4888888766
Q ss_pred cee
Q psy682 267 NRL 269 (330)
Q Consensus 267 ~~l 269 (330)
..+
T Consensus 343 ~~~ 345 (402)
T 2aq5_A 343 RKC 345 (402)
T ss_dssp TEE
T ss_pred CcE
Confidence 544
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=1.7e-22 Score=188.09 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=136.1
Q ss_pred eeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC
Q psy682 22 AFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101 (330)
Q Consensus 22 tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~ 101 (330)
++.+|.+.|++|+|+|||++ +||++.|++|++|+...+.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~-----------------------------------------lasgs~D~~v~lwd~~~~~ 46 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTR-----------------------------------------LATCSSDRSVKIFDVRNGG 46 (316)
T ss_dssp ------CCEEEEEECGGGCE-----------------------------------------EEEEETTTEEEEEEEETTE
T ss_pred ecccccCeEEEeeEcCCCCE-----------------------------------------EEEEeCCCeEEEEEecCCC
Confidence 45788888888888888776 4888999999999986542
Q ss_pred ---cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecC--CCeEEE
Q psy682 102 ---SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVD--SRFLLA 169 (330)
Q Consensus 102 ---~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spD--g~~i~a 169 (330)
+.++.+|.+ ++.++.|+++ +. +++++.++...+|....+. .....+..|. .+++|+|| |++ ++
T Consensus 47 ~~~~~~l~gH~~----~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~-la 121 (316)
T 3bg1_A 47 QILIADLRGHEG----PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLI-LA 121 (316)
T ss_dssp EEEEEEEECCSS----CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSC-EE
T ss_pred cEEEEEEcCCCc----cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcE-EE
Confidence 455679974 6778999863 65 7765555544444322111 0111233332 58899998 767 67
Q ss_pred eeccCCeEEEeeeccccc---ccccccCCCCcE----EEe-------------------HHHHHhhhccCCCcEEEEccc
Q psy682 170 CGFWDNSFREPFTTMYLA---LQEGKFDHPNRL----FSS-------------------ISLAWKNCQRDTSDVKVHTTF 223 (330)
Q Consensus 170 sg~~D~tirl~w~~~~g~---l~~~l~gH~d~V----iaS-------------------t~~lW~~SgS~Dgtvkl~~~~ 223 (330)
+|+.|++||+ |++..+. +...+.+|...| +.. ...+ +||.||+||||+.+
T Consensus 122 sgs~D~~i~l-wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 122 CGSSDGAISL-LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA---SGGCDNLIKLWKEE 197 (316)
T ss_dssp EECSSSCEEE-EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE---CCBTTSBCCEEEEC
T ss_pred EEcCCCCEEE-EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE---EecCCCeEEEEEeC
Confidence 7789999999 9997652 356778888766 211 1223 89999999999875
Q ss_pred -C---ceeeecCCCCCCCCCcEEEeCCCc----cEEEEcc-CCeEEEEeeCC
Q psy682 224 -G---DLLRSLDPPSGFASPESVVMSREG----VIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 224 -G---~ll~tL~~h~~~~~v~~v~fS~dG----~~l~s~~-~~~~~~~s~nG 266 (330)
+ +++++|.+|.+ .|++|+|+|+| +.||+++ ++++++|..+.
T Consensus 198 ~~~~~~~~~~l~~h~~--~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 198 EDGQWKEEQKLEAHSD--WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp TTSCEEEEECCBCCSS--CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCCccceeeecccCCC--ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 3 47889999999 99999999997 8899985 88999998764
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.1e-22 Score=205.01 Aligned_cols=208 Identities=11% Similarity=0.007 Sum_probs=152.9
Q ss_pred ecCCCceeEEEeCCCCCc----C---------cceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcc
Q psy682 24 PSCDSSVRSLALSHDQKY----S---------PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQF 90 (330)
Q Consensus 24 ~gH~~~V~svafSpdg~~----~---------~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~ 90 (330)
+.-..||++|+|||||++ . ......+|...|+.|+|+|+| .++
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg------------------------~~~ 67 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE------------------------FEN 67 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC------------------------CCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC------------------------Ccc
Confidence 556799999999999999 1 111125788888999999988 256
Q ss_pred eEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceee-------eeeEEEEec
Q psy682 91 AINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV-------RHNCFVTTV 162 (330)
Q Consensus 91 tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~sp 162 (330)
++++|+.++....++ +|. +.+.+++|||||+ +|+++.++...+|.++ . +...+.. ...+++|||
T Consensus 68 ~~~~~~~~~~~~~~~-~~~----~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--~-~l~~l~~~~~~~~~sv~svafSP 139 (588)
T 2j04_A 68 KLDFELAQQNGLLNS-QPV----CYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--K-MLTNLDSKGNLSSRTYHCFEWNP 139 (588)
T ss_dssp TTTTSCCCSSCSSTT-SCS----CCEEEEEECSSSSCEEEEETTSCEEEEETT--E-EEEECCCSSCSTTTCEEEEEECS
T ss_pred eEEEEeCCCceEeec-CCC----CcEEEEEECCCCCEEEEEeCCCcEEEEeCC--c-eeeeccCCCccccccEEEEEEcC
Confidence 677777766554443 444 5788999999999 7776666665555421 1 1111110 134889999
Q ss_pred CCCeEEEeeccCCeEEEeeecccccc-------cccc----cCCCCcEE----Ee-HHHHHhhhccCCCcEEEEcccCce
Q psy682 163 DSRFLLACGFWDNSFREPFTTMYLAL-------QEGK----FDHPNRLF----SS-ISLAWKNCQRDTSDVKVHTTFGDL 226 (330)
Q Consensus 163 Dg~~i~asg~~D~tirl~w~~~~g~l-------~~~l----~gH~d~Vi----aS-t~~lW~~SgS~Dgtvkl~~~~G~l 226 (330)
||++ +++|+.|++||+ |++.++++ ++++ .||.+.|. .+ . .+ ++|.|++|++|+.+++.
T Consensus 140 DG~~-LAsgs~DGtVkI-Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-La---ass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 140 IESS-IVVGNEDGELQF-FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LV---AALSNNSVFSMTVSASS 213 (588)
T ss_dssp SSSC-EEEEETTSEEEE-EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EE---EEETTCCEEEECCCSSS
T ss_pred CCCE-EEEEcCCCEEEE-EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EE---EEeCCCeEEEEECCCCc
Confidence 9999 555668999999 99987764 4565 78889982 22 4 44 89999999999987655
Q ss_pred e----eec-CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeecc
Q psy682 227 L----RSL-DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES 273 (330)
Q Consensus 227 l----~tL-~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~ 273 (330)
+ ++| .+|.. .|.+|+|| |++||+++++++++|.++|..+....
T Consensus 214 ~~~~~~tL~~~h~~--~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 214 HQPVSRMIQNASRR--KITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp SCCCEEEEECCCSS--CCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cccceeeecccccC--cEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEE
Confidence 4 568 47777 89999999 79999998899999999988884444
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=179.90 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=152.6
Q ss_pred CcccCCCcEEEeeccc-cccc-ceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEe--
Q psy682 1 MSGGDKGIVEVWRTFN-LALL-YAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKF-- 59 (330)
Q Consensus 1 asgs~d~~V~lW~~~~-g~~l-~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~F-- 59 (330)
|+|+.||+|++|++.+ ++.+ ..+.+|...|++++|+|||++ ........|...+..+.|
T Consensus 58 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 137 (368)
T 3mmy_A 58 IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK 137 (368)
T ss_dssp EEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEE
T ss_pred EEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEe
Confidence 5789999999999987 5555 789999999999999999987 001113356666666776
Q ss_pred CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCc
Q psy682 60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV 138 (330)
Q Consensus 60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~ 138 (330)
+|++.. +++++.|++|++|+....... ....|. ...++.+..+..+. ++.++ .+
T Consensus 138 ~~~~~~-----------------l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~--~i 192 (368)
T 3mmy_A 138 APNYSC-----------------VMTGSWDKTLKFWDTRSSNPMMVLQLPE-----RCYCADVIYPMAVV-ATAER--GL 192 (368)
T ss_dssp CSSCEE-----------------EEEEETTSEEEEECSSCSSCSEEEECSS-----CEEEEEEETTEEEE-EEGGG--CE
T ss_pred CCCCCE-----------------EEEccCCCcEEEEECCCCcEEEEEecCC-----CceEEEecCCeeEE-EeCCC--cE
Confidence 666665 488888999999998655433 333332 34445555443322 22222 23
Q ss_pred ceeccCCCCc------cceeeeeeEEEEecCCCe---EEEeeccCCeEEEeeecccc---cccccccCCCC---------
Q psy682 139 PKRHLGDNFS------QKLRVRHNCFVTTVDSRF---LLACGFWDNSFREPFTTMYL---ALQEGKFDHPN--------- 197 (330)
Q Consensus 139 ~~~~l~~~~~------~~~~~~~~~~~~spDg~~---i~asg~~D~tirl~w~~~~g---~l~~~l~gH~d--------- 197 (330)
..+.+..... ........++++.++++. .+++|+.|++|++ |++..+ +....+.+|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI-HYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE-EESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE-EecCCCCccccceeeeeeecccccccccc
Confidence 3333322110 001112246666665543 2445668999999 999876 66778888876
Q ss_pred ---cE--E--Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682 198 ---RL--F--SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 198 ---~V--i--aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
.| + .. ...+ +|+.||+|+||+. +|++++++.+|.+ .|.+++|||||+.||+++
T Consensus 272 ~~~~v~~~~~sp~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLA---TVGSDGRFSFWDKDARTKLKTSEQLDQ--PISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EECCEEEEEECTTTCCEE---EEETTSCEEEEETTTTEEEEECCCCSS--CEEEEEECTTSSCEEEEE
T ss_pred cccceEEEEEecCCCEEE---EEccCCeEEEEECCCCcEEEEecCCCC--CceEEEECCCCCeEEEEe
Confidence 34 1 11 2333 8999999999976 6999999999998 999999999999999985
No 83
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.86 E-value=4e-21 Score=174.76 Aligned_cols=246 Identities=14% Similarity=0.089 Sum_probs=168.8
Q ss_pred ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------------------Ccceeee--ecCccEEEEEeC
Q psy682 3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMFST--VLDDVCMSLKFP 60 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~--~~~d~~~~v~Fs 60 (330)
+..++.+..|............+|...|++++|+|||++ ..+.... +|...+..++|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 106 (337)
T 1gxr_A 27 PFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp CCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC
T ss_pred ecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc
Confidence 334445555655544444455689999999999999987 0111222 577778888888
Q ss_pred CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCC
Q psy682 61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNA 136 (330)
Q Consensus 61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~ 136 (330)
|+++.+ ++++.+++|++|+.+... .....+|. ..+.++.|+||+. +++++.++
T Consensus 107 ~~~~~l-----------------~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg-- 163 (337)
T 1gxr_A 107 PDGCTL-----------------IVGGEASTLSIWDLAAPTPRIKAELTSSA----PACYALAISPDSKVCFSCCSDG-- 163 (337)
T ss_dssp TTSSEE-----------------EEEESSSEEEEEECCCC--EEEEEEECSS----SCEEEEEECTTSSEEEEEETTS--
T ss_pred CCCCEE-----------------EEEcCCCcEEEEECCCCCcceeeecccCC----CceEEEEECCCCCEEEEEeCCC--
Confidence 888864 677788899999997665 33344665 3567899999998 55433333
Q ss_pred CcceeccCC-CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHH
Q psy682 137 PVPKRHLGD-NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLA 206 (330)
Q Consensus 137 ~~~~~~l~~-~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~l 206 (330)
.+..+.+.. .....+..+ ..+++++||+++|+ +++.|++|++ |++.+++.+..+ .|...+. .. ...+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~-~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRS-WDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEE-EETTTTEEEEEE-ECSSCEEEEEECTTSSEEE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE-EEecCCcEEE-EECCCCceEeee-cCCCceEEEEECCCCCEEE
Confidence 334444322 111223322 25788999999855 5558999999 999988877665 4555551 11 2233
Q ss_pred HhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCccccc
Q psy682 207 WKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHNDNLQ 279 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~~dVk 279 (330)
+|+.||+|++|+.....+..+.+|.. .|.+++|+|||+.|++++ ++.++.|..+ |+.+........+.
T Consensus 241 ---~~~~~~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~ 310 (337)
T 1gxr_A 241 ---VGMESSNVEVLHVNKPDKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310 (337)
T ss_dssp ---EEETTSCEEEEETTSSCEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred ---EEcCCCcEEEEECCCCCeEEEcCCcc--ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEE
Confidence 78999999999887666678899988 999999999999999985 8889999854 45444433333333
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=3.5e-21 Score=182.60 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=148.3
Q ss_pred EeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee---ccceec-cCCcEEEEEc
Q psy682 11 VWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA---NTYVTL-HMPSVVTVTA 86 (330)
Q Consensus 11 lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~---~~~~~~-~~~~~v~vS~ 86 (330)
||.+++.+.+.++++|...|++|+|||||++ +..+.++.+......+. ..++... .....+ ..+..+.+++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~----la~g~~~~~~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSC----LILSTLKSFEIYNVHPV-AHIMSQEMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSSE----EEEECSSEEEEEEETTE-EEEEEEECSCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCE----EEEEcCCEEEEEecCCc-ceeeeeecCCeEEEEEcCCCCEEEEEE
Confidence 6778888888899999999999999999998 55566665433322221 1111110 011111 2334445667
Q ss_pred CCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC--CccceeeeeeEEEEecCC
Q psy682 87 NHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--FSQKLRVRHNCFVTTVDS 164 (330)
Q Consensus 87 ~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~spDg 164 (330)
+.+++|++|+...+.......|. +.+.++.|++|..+.+ .++ .+..+.+... ...++.......++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~----~~v~~v~~~~~~~~~~--~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~s~-- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVD----APVKDLFLSREFIVVS--YGD--VISVFKFGNPWKRITDDIRFGGVCEFSN-- 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECS----SCEEEEEECSSEEEEE--ETT--EEEEEESSTTCCBSSCCEEEEEEEEEET--
T ss_pred CCccEEEEEECCCCcEEEEEECC----CceEEEEEcCCEEEEE--EcC--EEEEEECCCCceeeEEeccCCceEEEEc--
Confidence 77889999998766544444454 3677899998876543 222 2344444322 2233333334566787
Q ss_pred CeEEEe-eccCCeEEEeeeccccc----------------ccccccCCCCcEE----Ee--HHHHHhhhccCCCc-EEEE
Q psy682 165 RFLLAC-GFWDNSFREPFTTMYLA----------------LQEGKFDHPNRLF----SS--ISLAWKNCQRDTSD-VKVH 220 (330)
Q Consensus 165 ~~i~as-g~~D~tirl~w~~~~g~----------------l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgt-vkl~ 220 (330)
++++.+ |+.|++|++ |++.+++ .+..+.+|.+.|. .. ...+ |||.||+ |+||
T Consensus 148 ~~la~~sg~~~g~v~i-wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~---s~s~d~~~v~iw 223 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHI-TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA---TCSQDGTIIRVF 223 (355)
T ss_dssp TEEEEEESSCTTCEEE-EECCC------------------CCEEECCCSSCEEEEEECTTSSEEE---EEETTCSEEEEE
T ss_pred cEEEEeCCCcCcEEEE-EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE---EEeCCCCEEEEE
Confidence 565555 889999999 9998765 2778999999982 22 4444 9999999 9999
Q ss_pred cc-cCceeeecC-C-CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682 221 TT-FGDLLRSLD-P-PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN 267 (330)
Q Consensus 221 ~~-~G~ll~tL~-~-h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~ 267 (330)
+. +|+.+++|+ + |.+ .|.+|+|||||+.||+++ ++++++|.++..
T Consensus 224 d~~~~~~~~~~~~g~h~~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRA--DVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTTCCEEEEEECTTCCS--CEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred ECCCCcEEEEEEcCCCCC--cEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 76 699999998 6 888 999999999999999995 789999997643
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.3e-21 Score=175.74 Aligned_cols=208 Identities=7% Similarity=0.081 Sum_probs=151.0
Q ss_pred ccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682 19 LLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS 80 (330)
Q Consensus 19 ~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~ 80 (330)
...+|.+|.+.|.+++|||||++ ..+..+.+|...|..+.|+|+++.+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-------------- 89 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC-------------- 89 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE--------------
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEE--------------
Confidence 34458999999999999999987 2223345788888888888888864
Q ss_pred EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCC-----CCCCcceeccCCCC-------
Q psy682 81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN-----NNAPVPKRHLGDNF------- 147 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~-----~~~~~~~~~l~~~~------- 147 (330)
++++.|++|++|+...........|. ..+.++.|+||+. +++++.+ +...++........
T Consensus 90 ---~s~~~dg~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 90 ---VTGSADYSIKLWDVSNGQCVATWKSP----VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp ---EEEETTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred ---EEEeCCCeEEEEECCCCcEEEEeecC----CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 77788999999999776654444454 4677899999999 4432222 22222222211110
Q ss_pred ---ccceee-----eeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEE--E-e---HHHHHhhhcc
Q psy682 148 ---SQKLRV-----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLF--S-S---ISLAWKNCQR 212 (330)
Q Consensus 148 ---~~~~~~-----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS 212 (330)
...+.. ...+++++||+++| ++|+.|++|++ |++.+ ++.+..+.+|...|. + + ...+ +++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~ 237 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYI-IAGHKDGKISK-YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI---TSS 237 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEE-EEEETTSEEEE-EETTTTTEEEEEEECCSSCEEEEEECTTSSEEE---EEE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEE-EEEcCCCEEEE-EECCCCcEeEEEEecCCCceeEEEECCCCCEEE---Eec
Confidence 011111 33578899999985 55668999999 99988 788899999998882 1 2 2233 899
Q ss_pred CCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682 213 DTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 213 ~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
.||+|++|+. +|+.++++. +.. .+..++|+|+|+.++.++
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE-TDC--PLNTAVITPLKEFIILGG 278 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECSSSSEEEEEE
T ss_pred CCceEEEEECCCCceeeeec-CCC--CceeEEecCCCceEEEee
Confidence 9999999976 689999988 444 799999999999999884
No 86
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=9.9e-22 Score=180.40 Aligned_cols=223 Identities=9% Similarity=-0.090 Sum_probs=160.4
Q ss_pred CcccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCC-c-------Ccc-----------eeeee--cCccEEE
Q psy682 1 MSGGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQK-Y-------SPM-----------MFSTV--LDDVCMS 56 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~-~-------~~l-----------~~~~~--~~d~~~~ 56 (330)
|+|+.||+|++|++.+++ .+..+.+|...|.+++|+|+++ + ..+ ....+ |...|..
T Consensus 27 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106 (342)
T ss_dssp EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEE
T ss_pred EEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEE
Confidence 578899999999998776 3566789999999999999999 5 001 11224 6666666
Q ss_pred EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC---------CCcccCCCCCCCCCCCCCCccccCCCce
Q psy682 57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY---------AASIQSPSYAETPGSPPGNLPLTLDPIL 127 (330)
Q Consensus 57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~---------~~~~~~~~h~~~~~~~~~~l~fs~D~~l 127 (330)
++|+| +.. +++++.+++|++|+... ........|. ..+.++.|++|+ +
T Consensus 107 l~~~~-~~~-----------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~-l 163 (342)
T 1yfq_A 107 ICKYG-DDK-----------------LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK----NKIFTMDTNSSR-L 163 (342)
T ss_dssp EEEET-TTE-----------------EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC----CCEEEEEECSSE-E
T ss_pred EEeCC-CCE-----------------EEEEcCCCeEEEEcccccccccccccCCeeeEEeeC----CceEEEEecCCc-E
Confidence 66666 554 47888899999999865 4433333454 467789999999 6
Q ss_pred eccCCCCCCCcceeccCC-CCc--cce----eeeeeEEEEec-CCCeEEEeeccCCeEEEeeecccc------ccccccc
Q psy682 128 THPTSNNNAPVPKRHLGD-NFS--QKL----RVRHNCFVTTV-DSRFLLACGFWDNSFREPFTTMYL------ALQEGKF 193 (330)
Q Consensus 128 ~~~s~~~~~~~~~~~l~~-~~~--~~~----~~~~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g------~l~~~l~ 193 (330)
++++.++ .+..+.+.. ... ... .....+++++| |+++ +++|+.|+.|++ |+++.+ +....+.
T Consensus 164 ~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 164 IVGMNNS--QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAV-EFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEESTT--EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-EEEEETTSEEEE-EECCTTCCSTTCTTCEEEE
T ss_pred EEEeCCC--eEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-EEEEecCCcEEE-EEEcCCCcccccccceeee
Confidence 6544443 334444432 110 001 11236889999 9998 455667999999 999877 7788888
Q ss_pred CCCC---------cEE----Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCC-CCCCCCcEEEeCCCccEEEEcc-
Q psy682 194 DHPN---------RLF----SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPP-SGFASPESVVMSREGVIVVNYE- 255 (330)
Q Consensus 194 gH~d---------~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~s~~- 255 (330)
+|.. .|. .. ...+ +|+.||+|++|+. +|++++++.+| .+ .|.+++ |||+.||+++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLY---TAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNILCLATS 312 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEE---EEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEEEEEEE
T ss_pred cccccccccccceeEEEEEEcCCCCEEE---EecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeEEEEec
Confidence 8865 552 11 2233 8999999999986 69999999998 88 899999 9999999985
Q ss_pred CC
Q psy682 256 RG 257 (330)
Q Consensus 256 ~~ 257 (330)
++
T Consensus 313 Dg 314 (342)
T 1yfq_A 313 DD 314 (342)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.86 E-value=3.8e-22 Score=190.47 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=122.5
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS 80 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~ 80 (330)
|||+.|++|||||+.+++++.++. |...|++|+|||||++
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~--------------------------------------- 190 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKV--------------------------------------- 190 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSE---------------------------------------
T ss_pred EECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCce---------------------------------------
Confidence 467789999999999999998886 7788999999999988
Q ss_pred EEEEEcCCcceEEEeCCCCCCcc--cCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc--ceeccCCCCc-----cc
Q psy682 81 VVTVTANHQFAINRWNPDYAASI--QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV--PKRHLGDNFS-----QK 150 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~~~~--~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~--~~~~l~~~~~-----~~ 150 (330)
+++++.+..+.+|..++..+. ...+|.. .+.++.|+||+. +++++.++.... +.+.+..... ..
T Consensus 191 --l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~ 264 (365)
T 4h5i_A 191 --VAYITGSSLEVISTVTGSCIARKTDFDKNW----SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ 264 (365)
T ss_dssp --EEEECSSCEEEEETTTCCEEEEECCCCTTE----EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred --EEeccceeEEEEEeccCcceeeeecCCCCC----CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence 355565555555555555432 2336653 567899999999 555444443332 2333221110 11
Q ss_pred eeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc-ccCCCCcE----EEe--HHHHHhhhccCCCcEEEE
Q psy682 151 LRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-KFDHPNRL----FSS--ISLAWKNCQRDTSDVKVH 220 (330)
Q Consensus 151 ~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~ 220 (330)
+..+ ..+++|||||++ +++|+.|++||| |++++++++++ +.+|.+.| |.+ ...+ |||.|+|||||
T Consensus 265 ~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~i-wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la---S~S~D~tvrvw 339 (365)
T 4h5i_A 265 VTNRFKGITSMDVDMKGEL-AVLASNDNSIAL-VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA---SVSAANTIHII 339 (365)
T ss_dssp EESSCSCEEEEEECTTSCE-EEEEETTSCEEE-EETTTTEEEEEETTSSSSCEEEEEECTTSCEEE---EEETTSEEEEE
T ss_pred ecCCCCCeEeEEECCCCCc-eEEEcCCCEEEE-EECCCCcEEEEecCcccCCEEEEEECCCCCEEE---EEeCCCeEEEE
Confidence 2222 258999999998 667778999999 99999998877 58999998 222 4445 99999999999
Q ss_pred cc
Q psy682 221 TT 222 (330)
Q Consensus 221 ~~ 222 (330)
+.
T Consensus 340 ~i 341 (365)
T 4h5i_A 340 KL 341 (365)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 88
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=1.5e-21 Score=192.69 Aligned_cols=220 Identities=11% Similarity=0.078 Sum_probs=169.5
Q ss_pred cccCCCcEEEeecccc----cccceeecCCCc-eeEEEeCC--CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682 2 SGGDKGIVEVWRTFNL----ALLYAFPSCDSS-VRSLALSH--DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYV 74 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g----~~l~tl~gH~~~-V~svafSp--dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~ 74 (330)
+|+ |+.|++|++.++ +.+..|.+|... |.+++||| ||++
T Consensus 35 ~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~--------------------------------- 80 (615)
T 1pgu_A 35 YPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY--------------------------------- 80 (615)
T ss_dssp EEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE---------------------------------
T ss_pred Eec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE---------------------------------
Confidence 344 789999999999 899999999999 99999999 9887
Q ss_pred eccCCcEEEEEcCCcceEEEeCCCC---------CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCC--CCcceec
Q psy682 75 TLHMPSVVTVTANHQFAINRWNPDY---------AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNN--APVPKRH 142 (330)
Q Consensus 75 ~~~~~~~v~vS~~~~~tv~lW~~~~---------~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~--~~~~~~~ 142 (330)
+|+++.|++|++|+... .......+|. .++.++.|+||++ +++++.+.+ ..++.+.
T Consensus 81 --------l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 81 --------LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp --------EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred --------EEEecCCCEEEEEeCCCCcccccccccccchhhccc----ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 47788899999999952 3344455676 4677899999999 443222211 1233444
Q ss_pred cCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC---cE----EEeH---HHHHhh
Q psy682 143 LGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN---RL----FSSI---SLAWKN 209 (330)
Q Consensus 143 l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d---~V----iaSt---~~lW~~ 209 (330)
.+.. ...+..+ ..+++|+||+++++++|+.|++|++ |+..+++++..+.+|.+ .| +... ..+
T Consensus 149 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--- 223 (615)
T 1pgu_A 149 SGNS-LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF-YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI--- 223 (615)
T ss_dssp TCCE-EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE-EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE---
T ss_pred CCCc-ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE-EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE---
Confidence 3221 1223333 2588999999966777889999999 99999999999999999 77 2222 233
Q ss_pred hccCCCcEEEEcc-cCceeeec-C---CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682 210 CQRDTSDVKVHTT-FGDLLRSL-D---PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 210 SgS~Dgtvkl~~~-~G~ll~tL-~---~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~ 275 (330)
+|+.||+|++|+. +|+.++++ . +|.+ .|.+++|+ +|+.|++++ ++.++.|.++ |+.+.....+
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQG--GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBTTBCCCS--CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEeCCCeEEEEECCCCCEeEEecccccccCC--ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 8999999999985 79999999 6 8888 99999999 999999985 7899999876 7777776654
No 89
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=1.8e-20 Score=176.23 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=170.1
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Ccc-----------eeeeecCccEEEEEeCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPM-----------MFSTVLDDVCMSLKFPS 61 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l-----------~~~~~~~d~~~~v~Fs~ 61 (330)
++++.|++|++|++.+|+.+.++.+|.. +.+++|+|||+. ..+ ..... ...+..++|+|
T Consensus 6 vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~v~~~~~sp 83 (391)
T 1l0q_A 6 IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-GSSPQGVAVSP 83 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSEEEEEECT
T ss_pred EEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-CCCccceEECC
Confidence 4788999999999999999999998865 899999999985 001 11112 22667777888
Q ss_pred CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682 62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR 141 (330)
Q Consensus 62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~ 141 (330)
+++.+ .++++.+++|++|+...+.......+. ..+.++.|+||++....+++.+..+..+
T Consensus 84 dg~~l----------------~~~~~~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 84 DGKQV----------------YVTNMASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp TSSEE----------------EEEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEE----------------EEEECCCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 87764 456667789999999876644433222 2467899999998331123333344455
Q ss_pred ccCC-CCccceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee--HHHHHhhhcc-
Q psy682 142 HLGD-NFSQKLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS--ISLAWKNCQR- 212 (330)
Q Consensus 142 ~l~~-~~~~~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS--t~~lW~~SgS- 212 (330)
.+.. .....+..+ ..+++|+|||++|+++++.|++|++ |++.+++.+..+..+. .+ + .+ --.++ .++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~-~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~--~~~~ 219 (391)
T 1l0q_A 144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV-IDTVTNSVIDTVKVEA-APSGIAVNPEGTKAY--VTNV 219 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE-EETTTTEEEEEEECSS-EEEEEEECTTSSEEE--EEEE
T ss_pred ECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEE-EECCCCeEEEEEecCC-CccceEECCCCCEEE--EEec
Confidence 4422 111122222 2578899999998888888999999 9999888877665443 33 1 12 11111 333
Q ss_pred --CCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEE-EEc-cCCeEEEEeeC-CceeeeccCc
Q psy682 213 --DTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV-VNY-ERGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 213 --~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s~n-G~~las~~~~ 275 (330)
.|++|++|+. +|+.++++..|. .+.+++|+|||+.| +++ .++.+..|... |+.+..+..+
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 7999999986 689999998864 47899999999876 565 58899999865 6776666544
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.5e-21 Score=186.31 Aligned_cols=252 Identities=11% Similarity=0.041 Sum_probs=167.7
Q ss_pred ccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCC-------------CCc-----------------Ccceeeee
Q psy682 3 GGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHD-------------QKY-----------------SPMMFSTV 49 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpd-------------g~~-----------------~~l~~~~~ 49 (330)
++.++.|++|++.+|+ .+.+++.|........+... ++. .+....++
T Consensus 21 ~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (450)
T 2vdu_B 21 AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPP 100 (450)
T ss_dssp EEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------------------C
T ss_pred EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCccccCCCCCCCc
Confidence 4567899999999999 89999988776655555311 000 00111235
Q ss_pred cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC--CCC-cccCC--CCCCCCCCCCCCccccCC
Q psy682 50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD--YAA-SIQSP--SYAETPGSPPGNLPLTLD 124 (330)
Q Consensus 50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~--~~~-~~~~~--~h~~~~~~~~~~l~fs~D 124 (330)
|.+.|..++|+|+++.+ .|+++.|++|++|+.+ .+. +..+. +|. ..+.++.|+||
T Consensus 101 ~~~~v~~~~~s~d~~~l----------------~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~ 160 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRL----------------IACADSDKSLLVFDVDKTSKNVLKLRKRFCFS----KRPNAISIAED 160 (450)
T ss_dssp CCCCEEEEEECTTSSEE----------------EEEEGGGTEEEEEEECSSSSSCEEEEEEEECS----SCEEEEEECTT
T ss_pred cCCceEEEEEcCCCCEE----------------EEEECCCCeEEEEECcCCCCceeeeeecccCC----CCceEEEEcCC
Confidence 66689999999999974 4788889999999987 444 33333 343 35678999999
Q ss_pred Cc-eeccCCCCCCCcceeccCCCC-----ccceeeee---eEEEEecC---CCeEEEeeccCCeEEEeeeccccccccc-
Q psy682 125 PI-LTHPTSNNNAPVPKRHLGDNF-----SQKLRVRH---NCFVTTVD---SRFLLACGFWDNSFREPFTTMYLALQEG- 191 (330)
Q Consensus 125 ~~-l~~~s~~~~~~~~~~~l~~~~-----~~~~~~~~---~~~~~spD---g~~i~asg~~D~tirl~w~~~~g~l~~~- 191 (330)
+. +++++.++. ++.+.+...- .+.+..|. .+++|+|| +++ +++|+.|++||+ |++.+++++..
T Consensus 161 ~~~l~~~~~~g~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~~d~~i~v-wd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGD--VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF-IITSDRDEHIKI-SHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSE--EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE-EEEEETTSCEEE-EEESCTTCEEEE
T ss_pred CCEEEEEeCCCc--EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE-EEEEcCCCcEEE-EECCCCceeeee
Confidence 98 554333332 3344332211 11344443 58899999 888 455668999999 99998988877
Q ss_pred ccCCCCcEEE---e--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCC-----------------------CCCCCcEE
Q psy682 192 KFDHPNRLFS---S--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPS-----------------------GFASPESV 242 (330)
Q Consensus 192 l~gH~d~Via---S--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~-----------------------~~~~v~~v 242 (330)
+.+|.+.|.. + ...+ +|+.||+|+||+. +|++++++..+. ....|..|
T Consensus 237 ~~~h~~~v~~~~~sd~~~l~---s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 237 LFGHKHFVSSICCGKDYLLL---SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp CCCCSSCEEEEEECSTTEEE---EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred ecCCCCceEEEEECCCCEEE---EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 6699988721 2 2233 8999999999975 799999887431 11268999
Q ss_pred EeCCCccEEEEc--cCCeEEEEee---CC---ceeeeccCccccccc
Q psy682 243 VMSREGVIVVNY--ERGHIAAFTM---NG---NRLRHESHNDNLQEL 281 (330)
Q Consensus 243 ~fS~dG~~l~s~--~~~~~~~~s~---nG---~~las~~~~~dVkEL 281 (330)
+|+|||+.|+++ +++.+.+|.+ .+ +.+..+..+..+..+
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~ 360 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISL 360 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEE
Confidence 999999999887 4889999998 44 455555555555543
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.85 E-value=3.3e-21 Score=198.15 Aligned_cols=230 Identities=9% Similarity=0.074 Sum_probs=171.8
Q ss_pred cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
+..++|.+|.+.|.+++|||||+. ..+....+|...|..++|+|+++.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------- 70 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWI------------- 70 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-------------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEE-------------
Confidence 456789999999999999999987 1223355788889999999999975
Q ss_pred cEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682 80 SVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH-- 155 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~-- 155 (330)
|+++.+++|++|+.+.+. +.+..+|. +.+.++.|+||+. +++++.++...+|....+....+.+..+.
T Consensus 71 ----~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 71 ----IVGSDDFRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp ----EEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred ----EEEeCCCeEEEEECCCCcEEEEEecCC----CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 777779999999987655 44555787 4677899999998 66544444444443332222333344333
Q ss_pred -eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCC-CcE----EEe----HHHHHhhhccCCCcEEEEcc-c
Q psy682 156 -NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-NRL----FSS----ISLAWKNCQRDTSDVKVHTT-F 223 (330)
Q Consensus 156 -~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-d~V----iaS----t~~lW~~SgS~Dgtvkl~~~-~ 223 (330)
.+++|+| |+++ +++|+.|++|++ |++.+++....+..|. ..| +.. ...+ +|+.||+|++|+. +
T Consensus 143 v~~~~~~p~~~~~-l~~~~~dg~v~v-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 143 VMCVAFNPKDPST-FASGCLDRTVKV-WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQT 217 (814)
T ss_dssp EEEEEEETTEEEE-EEEEETTSEEEE-EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE---EECTTSEEEEEETTT
T ss_pred EEEEEEEcCCCCE-EEEEeCCCeEEE-EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE---EEeCCCEEEEEECCC
Confidence 5888999 7877 556678999999 9998888777776654 433 111 2233 8999999999975 7
Q ss_pred CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682 224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~ 275 (330)
|+.++++.+|.+ .|.+++|+|+|..|++++ ++.++.|..+ |+.+.....+
T Consensus 218 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 218 KSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 999999999988 999999999999999986 7889999876 5666665533
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.85 E-value=1.3e-21 Score=184.21 Aligned_cols=237 Identities=10% Similarity=-0.010 Sum_probs=167.1
Q ss_pred EeecccccccceeecCCCceeEEEeCCCC-Cc------------------Ccceeee--ecCccEEEEEeCC-CCCeeEe
Q psy682 11 VWRTFNLALLYAFPSCDSSVRSLALSHDQ-KY------------------SPMMFST--VLDDVCMSLKFPS-NSPICHV 68 (330)
Q Consensus 11 lW~~~~g~~l~tl~gH~~~V~svafSpdg-~~------------------~~l~~~~--~~~d~~~~v~Fs~-~~~v~~~ 68 (330)
+|++.+.++..++.+|...|++++|+||| ++ ....... +|.+.|..++|+| ++..
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--- 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ--- 133 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE---
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE---
Confidence 45556677788999999999999999998 54 1111122 5777888888888 5565
Q ss_pred eeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC
Q psy682 69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF 147 (330)
Q Consensus 69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~ 147 (330)
+++++.|++|++|+..+.......+|.. ....+.++.|+||+. +++++.+ ..+..+.+.+..
T Consensus 134 --------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~ 196 (383)
T 3ei3_B 134 --------------LFVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST--GRLLLLGLDGHE 196 (383)
T ss_dssp --------------EEEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT--SEEEEEETTSCE
T ss_pred --------------EEEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC--CCEEEEECCCCE
Confidence 4888889999999998766655554432 124677899999999 5543333 334455543333
Q ss_pred ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccc----ccccccccCCCCcE--E--Ee---HHHHHhhhccC
Q psy682 148 SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMY----LALQEGKFDHPNRL--F--SS---ISLAWKNCQRD 213 (330)
Q Consensus 148 ~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~----g~l~~~l~gH~d~V--i--aS---t~~lW~~SgS~ 213 (330)
..++..+. .+++|+|+++.++++|+.|++|++ |++.+ ++++..+ +|.+.| + .. ...+ +|+.
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~---~~~~ 271 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL-WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLL---TTDQ 271 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE-EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEE---EEES
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE-EeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEE---EEcC
Confidence 33344433 588999999955777779999999 99987 5566555 788887 2 12 2333 8999
Q ss_pred CCcEEEEcc-cCceeeecCCCCCC---------------CCCcEEEeCCCccEEEEc-cCCeEEEEee-CCceeeeccC
Q psy682 214 TSDVKVHTT-FGDLLRSLDPPSGF---------------ASPESVVMSREGVIVVNY-ERGHIAAFTM-NGNRLRHESH 274 (330)
Q Consensus 214 Dgtvkl~~~-~G~ll~tL~~h~~~---------------~~v~~v~fS~dG~~l~s~-~~~~~~~~s~-nG~~las~~~ 274 (330)
||+|+||+. +|+.++++.+|... ..+..++|||||++ ++ .++.+.+|.. +|+.+..+..
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 999999975 68888888866421 13334778888887 44 5889999986 5888887764
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2e-21 Score=181.95 Aligned_cols=208 Identities=8% Similarity=-0.037 Sum_probs=143.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS 80 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~ 80 (330)
|||+.||+|++|++.+|+.+.++. ...|++++|+|+
T Consensus 52 ~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~------------------------------------------ 87 (343)
T 3lrv_A 52 MCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA------------------------------------------ 87 (343)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS------------------------------------------
T ss_pred EEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc------------------------------------------
Confidence 589999999999999999888887 566777777663
Q ss_pred EEEEEcCCcceEEEeCCCCC---------C-cccC-CCCCCCCCCCCCCccccC--CCc-eeccCCCCCCCcceeccCCC
Q psy682 81 VVTVTANHQFAINRWNPDYA---------A-SIQS-PSYAETPGSPPGNLPLTL--DPI-LTHPTSNNNAPVPKRHLGDN 146 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~---------~-~~~~-~~h~~~~~~~~~~l~fs~--D~~-l~~~s~~~~~~~~~~~l~~~ 146 (330)
.+|++.|++|++|+.++. . +... .+|. +++.++.|+| |+. +++++.++...+|....+..
T Consensus 88 --~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 161 (343)
T 3lrv_A 88 --IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA----NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ 161 (343)
T ss_dssp --EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS----SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE
T ss_pred --eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC----CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 278888889999977532 1 1122 2454 4678899999 998 55444444444433222221
Q ss_pred Cccceee----eeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc-ccccC-CCCcE----EEe--HHHHHhhhccCC
Q psy682 147 FSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ-EGKFD-HPNRL----FSS--ISLAWKNCQRDT 214 (330)
Q Consensus 147 ~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~-~~l~g-H~d~V----iaS--t~~lW~~SgS~D 214 (330)
. ..... ...+++|+|||++ +++|+.|++||+ |++.+++.. ..+.+ |.+.| +.. ...+ +|+ |
T Consensus 162 ~-~~~~~~~~~~i~~~~~~pdg~~-lasg~~dg~i~i-wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~---s~~-~ 234 (343)
T 3lrv_A 162 Y-IVHSAKSDVEYSSGVLHKDSLL-LALYSPDGILDV-YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV---VEC-D 234 (343)
T ss_dssp E-EEECCCSSCCCCEEEECTTSCE-EEEECTTSCEEE-EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE---EEE-S
T ss_pred E-EEEecCCCCceEEEEECCCCCE-EEEEcCCCEEEE-EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE---EEe-C
Confidence 1 11111 1358899999998 666778999999 999999887 77888 99988 222 3333 778 5
Q ss_pred CcEEEEcc-cCceeeecCCCCCC-CCCc--EEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682 215 SDVKVHTT-FGDLLRSLDPPSGF-ASPE--SVVMSREGVIVVNY--ERGHIAAFTMN 265 (330)
Q Consensus 215 gtvkl~~~-~G~ll~tL~~h~~~-~~v~--~v~fS~dG~~l~s~--~~~~~~~~s~n 265 (330)
++|+||+. +++.++++..+... ..+. +++|+|+|+.|+++ +++.+++|..+
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 59999976 67777777663221 1444 59999999999995 38889999774
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.84 E-value=1.3e-20 Score=182.63 Aligned_cols=177 Identities=10% Similarity=0.012 Sum_probs=127.6
Q ss_pred EEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCCCcccee-----
Q psy682 83 TVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDNFSQKLR----- 152 (330)
Q Consensus 83 ~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~----- 152 (330)
+|+++.|++|++|+.+... .....||.+ .+.++.|+| |+. +++++.++. +..|.+.....+.+.
T Consensus 135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~----~V~~l~f~p~~~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~ 208 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG----SITGLKFNPLNTNQFYASSMEGT--TRLQDFKGNILRVFASSDTI 208 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCCEEECCCSSSC----CCCEEEECSSCTTEEEEECSSSC--EEEEETTSCEEEEEECCSSC
T ss_pred EEEEeCCCEEEEEECCCCCceeEEEccCCCC----CEEEEEEeCCCCCEEEEEeCCCE--EEEeeccCCceeEEeccCCC
Confidence 4888999999999987554 334558974 677899997 676 666555544 344444322111111
Q ss_pred -eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e---HHHHHhhhccCCCcEEEEcc-c
Q psy682 153 -VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S---ISLAWKNCQRDTSDVKVHTT-F 223 (330)
Q Consensus 153 -~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S---t~~lW~~SgS~Dgtvkl~~~-~ 223 (330)
....+++|+||+++ +++|+.|++|++ |+++ ++.+..+.+|.+.|. + . .+.+ +||.||+|+||+. +
T Consensus 209 ~~~~~~~~~~~~~~~-l~~g~~dg~i~~-wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~---s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 209 NIWFCSLDVSASSRM-VVTGDNVGNVIL-LNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA---TASVDQTVKIWDLRQ 282 (435)
T ss_dssp SCCCCCEEEETTTTE-EEEECSSSBEEE-EESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE---EEETTSBCCEEETTT
T ss_pred CccEEEEEECCCCCE-EEEEeCCCcEee-eccC-cceeEEEecccceEEeeeecCCCceEEE---EecCcceeeEEeccc
Confidence 11247889999998 566778999999 9995 788889999999982 1 1 2333 8999999999975 4
Q ss_pred Ccee---eecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceeeecc
Q psy682 224 GDLL---RSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES 273 (330)
Q Consensus 224 G~ll---~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~ 273 (330)
++.. ....+|.+ .|++|+|||||+.|++++ ++.+++|... |..+..+.
T Consensus 283 ~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 283 VRGKASFLYSLPHRH--PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp CCSSSCCSBCCBCSS--CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred ccccceEEEeeeccc--cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 4433 33467888 999999999999999995 8899999764 55554443
No 95
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.83 E-value=1.3e-20 Score=174.60 Aligned_cols=210 Identities=10% Similarity=-0.012 Sum_probs=150.7
Q ss_pred CcccCCCcEEEeecccccccce--eecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYA--FPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 78 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~t--l~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~ 78 (330)
|+|+.||+|++|++.+++.... +.+|...|.+++|+|||++
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------- 110 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK------------------------------------- 110 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE-------------------------------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE-------------------------------------
Confidence 4788999999999988764443 4789999999999998776
Q ss_pred CcEEEEEcCCcceEEEeCCCCCC----cccC-CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--------
Q psy682 79 PSVVTVTANHQFAINRWNPDYAA----SIQS-PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG-------- 144 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~~~~~----~~~~-~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~-------- 144 (330)
+++++.++.|++|+.+... .... .+|. ..+.++.|+||+. +++++.++. +..+.+.
T Consensus 111 ----l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~--i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 111 ----FAVGSGSRVISICYFEQENDWWVCKHIKKPIR----STVLSLDWHPNSVLLAAGSCDFK--CRIFSAYIKEVEERP 180 (372)
T ss_dssp ----EEEEETTSSEEEEEEETTTTEEEEEEECTTCC----SCEEEEEECTTSSEEEEEETTSC--EEEEECCCTTTSCCC
T ss_pred ----EEEEeCCCEEEEEEecCCCcceeeeeeecccC----CCeeEEEEcCCCCEEEEEcCCCC--EEEEEcccccccccc
Confidence 3677778889999987654 2222 3565 4677899999998 555344443 3334321
Q ss_pred -----------CCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HH
Q psy682 145 -----------DNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--IS 204 (330)
Q Consensus 145 -----------~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~ 204 (330)
+.....+..+ ..+++|+||+++| ++|+.|++|++ |++.+++++..+.+|...| +.. ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV-AWVSHDSTVCL-ADADKKMAVATLASETLPLLAVTFITESSL 258 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE-EEEETTTEEEE-EEGGGTTEEEEEECSSCCEEEEEEEETTEE
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEE-EEEeCCCEEEE-EECCCCceeEEEccCCCCeEEEEEecCCCE
Confidence 1111222222 3588899999985 55568999999 9999999999999998877 222 22
Q ss_pred HHHhhhccCCCcEEEEccc---Cc--ee------------------------------------eec-CCCCCCCCCcEE
Q psy682 205 LAWKNCQRDTSDVKVHTTF---GD--LL------------------------------------RSL-DPPSGFASPESV 242 (330)
Q Consensus 205 ~lW~~SgS~Dgtvkl~~~~---G~--ll------------------------------------~tL-~~h~~~~~v~~v 242 (330)
.+ +| .||+|++|+.. |+ ++ ..+ .+|.+ .|.+|
T Consensus 259 l~---~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~ 332 (372)
T 1k8k_C 259 VA---AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN--SVSQI 332 (372)
T ss_dssp EE---EE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS--CEEEE
T ss_pred EE---EE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC--Cccee
Confidence 22 44 89999999764 32 11 334 48888 99999
Q ss_pred Ee-CCCc---cEEEEcc-CCeEEEEeeC
Q psy682 243 VM-SREG---VIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 243 ~f-S~dG---~~l~s~~-~~~~~~~s~n 265 (330)
+| +++| +.||+++ ++.++.|.++
T Consensus 333 ~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 333 SVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred EEecCCCcceeeEEEecCCCceEEEEec
Confidence 85 4888 9999985 8899999854
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.7e-21 Score=199.35 Aligned_cols=211 Identities=11% Similarity=0.063 Sum_probs=158.9
Q ss_pred CcccCCCcEEEeecc--cccccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTF--NLALLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~--~g~~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
|+|+.||+|++|++. +++.+.++.+|.+.|++++|+|+ |+.
T Consensus 25 atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~----------------------------------- 69 (753)
T 3jro_A 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI----------------------------------- 69 (753)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSE-----------------------------------
T ss_pred EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCE-----------------------------------
Confidence 578999999999998 66888899999999999999987 555
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCC---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC---C
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN---F 147 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~---~ 147 (330)
+++++.|++|++|+.+.+ ......+|. ..+.++.|+|| +. +++++.++.. ..+.+... .
T Consensus 70 ------l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~----~~V~~v~~sp~~~~~~l~sgs~dg~I--~vwdl~~~~~~~ 137 (753)
T 3jro_A 70 ------LASCSYDGKVLIWKEENGRWSQIAVHAVHS----ASVNSVQWAPHEYGPLLLVASSDGKV--SVVEFKENGTTS 137 (753)
T ss_dssp ------EEEEETTSCEEEEEEETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTSEE--EEEECCSSSCCC
T ss_pred ------EEEEeCCCeEEEEECCCCcccccccccCCC----CCeEEEEECCCCCCCEEEEEeCCCcE--EEEEeecCCCcc
Confidence 488888999999999776 345556786 46788999999 76 6654444433 33433222 1
Q ss_pred ccceeee---eeEEEEec-------------CCCeEEEeeccCCeEEEeeecccc----cccccccCCCCcEE----EeH
Q psy682 148 SQKLRVR---HNCFVTTV-------------DSRFLLACGFWDNSFREPFTTMYL----ALQEGKFDHPNRLF----SSI 203 (330)
Q Consensus 148 ~~~~~~~---~~~~~~sp-------------Dg~~i~asg~~D~tirl~w~~~~g----~l~~~l~gH~d~Vi----aSt 203 (330)
...+..+ ..+++++| |+++ +++|+.|++|++ |++.++ ++...+.+|...|. .+.
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~-l~sgs~dg~I~i-wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI-WKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCC-EEEEETTSCEEE-EEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCE-EEEEECCCeEEE-EeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 1112222 25888999 5888 555668999999 999776 56778899999882 212
Q ss_pred -----HHHHhhhccCCCcEEEEcccC-c-----eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682 204 -----SLAWKNCQRDTSDVKVHTTFG-D-----LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 204 -----~~lW~~SgS~Dgtvkl~~~~G-~-----ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n 265 (330)
..+ +|+.||+|++|+... + .+....+|.+ .|.+++|+|||+.+++++ ++.++.|..+
T Consensus 216 ~~~~~~l~---s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 216 VLLRSYLA---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CSSSEEEE---EEESSSCEEEEEESSSSSCCBCCBSSSSCCSS--CCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCCEEE---EEecCCEEEEecCCCCCCcceeEEeccCCCCC--ceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 233 899999999998743 2 4455566777 899999999999999984 8899999887
No 97
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.2e-20 Score=172.93 Aligned_cols=236 Identities=11% Similarity=0.006 Sum_probs=160.7
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCC-c-------Cccee---------------------eee--------
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQK-Y-------SPMMF---------------------STV-------- 49 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~-~-------~~l~~---------------------~~~-------- 49 (330)
..+.+|+.+..........|.+.|++++|||||+ + ..+.. ...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 3567788765555445566779999999999999 5 00110 011
Q ss_pred --cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-
Q psy682 50 --LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI- 126 (330)
Q Consensus 50 --~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~- 126 (330)
|.+.|..++|+|+++.+ ++++.+++|++|+.++..+....+|. ..+.++.|+||+.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l-----------------~~~~~dg~i~i~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~ 163 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSI-----------------VTGVENGELRLWNKTGALLNVLNFHR----APIVSVKWNKDGTH 163 (425)
T ss_dssp ---CBCEEEEEECTTSSEE-----------------EEEETTSCEEEEETTSCEEEEECCCC----SCEEEEEECTTSSE
T ss_pred cCCCCceEEEEEcCCCCEE-----------------EEEeCCCeEEEEeCCCCeeeeccCCC----ccEEEEEECCCCCE
Confidence 35567777777777764 77788899999998777778888887 4677899999998
Q ss_pred eeccCCCCCCCcceeccCCC-Cccceeee------------------eeEEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682 127 LTHPTSNNNAPVPKRHLGDN-FSQKLRVR------------------HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA 187 (330)
Q Consensus 127 l~~~s~~~~~~~~~~~l~~~-~~~~~~~~------------------~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~ 187 (330)
+++++.++. +..+.+... ....+..+ ..+++++|++.+ + +++.|+.|++ |++.+++
T Consensus 164 l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~i~~-~d~~~~~ 238 (425)
T 1r5m_A 164 IISMDVENV--TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF-V-IPGPKGAIFV-YQITEKT 238 (425)
T ss_dssp EEEEETTCC--EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE-E-EECGGGCEEE-EETTCSS
T ss_pred EEEEecCCe--EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE-E-EEcCCCeEEE-EEcCCCc
Confidence 555444333 333433211 11111111 356778998753 4 4557999999 9999999
Q ss_pred ccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeE
Q psy682 188 LQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHI 259 (330)
Q Consensus 188 l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~ 259 (330)
.+..+.+|...| + .. ...+ +|+.||+|++|+. +++.++++.+|.. .|.+++|+|+| .++++ .++.+
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i 312 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLL---SASDDGTLRIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSV 312 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEE---EEETTSCEEEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEE
T ss_pred eeeeeccCCCceEEEEECCCCCEEE---EEcCCCEEEEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcE
Confidence 999999999987 2 22 3333 8999999999975 6899999999988 99999999999 66665 58888
Q ss_pred EEEee-CCceeeeccC
Q psy682 260 AAFTM-NGNRLRHESH 274 (330)
Q Consensus 260 ~~~s~-nG~~las~~~ 274 (330)
..|.+ +|+.+.....
T Consensus 313 ~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 313 RLWSLKQNTLLALSIV 328 (425)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCcEeEeccc
Confidence 88875 4666655553
No 98
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=5.5e-21 Score=185.39 Aligned_cols=187 Identities=10% Similarity=-0.023 Sum_probs=128.2
Q ss_pred CcEEEeecccccccce-eecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCC---CCCeeEeeeccceeccCCcEE
Q psy682 7 GIVEVWRTFNLALLYA-FPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPS---NSPICHVTANTYVTLHMPSVV 82 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~t-l~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~---~~~v~~~~~~~~~~~~~~~~v 82 (330)
.++++|++.+|+++.+ +.||...|+.++|||||+. +....+|...+..++|+| +++.+
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~s~~~~~~~v~~l~fs~~~g~~~~L---------------- 196 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--KENQFLMPPEETILTFAEVQGMQEAL---------------- 196 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--EEEEEECCCSSCEEEEEEEETSTTEE----------------
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--eeeeccCCCceeeEEeeccCCCCceE----------------
Confidence 3589999999999999 6899999999999999987 334558888888888888 67864
Q ss_pred EEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceecc-C----------CCCCCCcceeccCCCCccc
Q psy682 83 TVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHP-T----------SNNNAPVPKRHLGDNFSQK 150 (330)
Q Consensus 83 ~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~-s----------~~~~~~~~~~~l~~~~~~~ 150 (330)
||++.|++||+|+...+. +.++.+|...+. .+.+++|+|||++... + ++.+..+..+.... .
T Consensus 197 -aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t----g 270 (356)
T 2w18_A 197 -LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT----T 270 (356)
T ss_dssp -EEEETTSEEEEEETTTCCEEEEEECCC---C-CCEEEEEEETTEEEEEEC------------CCEEEEEEETTT----T
T ss_pred -EEecCCCcEEEEECCCCcEEEEEcCCCccee-eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC----C
Confidence 999999999999998665 566655543222 4556789999995421 1 11111112222110 0
Q ss_pred eeeeeeEEEEecCCC---e--------EEEeeccCCeEEEeeecccccccccccCCCCcEE-----Ee--HHHHHhhhcc
Q psy682 151 LRVRHNCFVTTVDSR---F--------LLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-----SS--ISLAWKNCQR 212 (330)
Q Consensus 151 ~~~~~~~~~~spDg~---~--------i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-----aS--t~~lW~~SgS 212 (330)
.......+++ |||+ + ++++|+.|++||| |++.+|++++++.+|.+.|+ .+ ..++ |||
T Consensus 271 k~l~v~~~~~-p~Gh~~~~lsg~~sg~~lASgS~DgTIkI-WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La---SGS 345 (356)
T 2w18_A 271 LSVGVMLYCL-PPGQAGRFLEGDVKDHCAAAILTSGTIAI-WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL---AGQ 345 (356)
T ss_dssp EEEEEEEECC-CTTCCCCEEEEEEETTEEEEEETTSCEEE-EETTTCSEEEEECCC--CCCCEEEECSSSSEEE---EEC
T ss_pred EEEEEEEeec-cCCCcceeEccccCCCEEEEEcCCCcEEE-EECCCCcEEEEecCCCCCeEEEEEECCCCCEEE---EEE
Confidence 1111111111 4444 1 3788889999999 99999999999999988542 22 3444 999
Q ss_pred CCCcEEEEcc
Q psy682 213 DTSDVKVHTT 222 (330)
Q Consensus 213 ~Dgtvkl~~~ 222 (330)
.|||||||+.
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999974
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7e-21 Score=182.36 Aligned_cols=212 Identities=14% Similarity=0.088 Sum_probs=149.2
Q ss_pred Eeeccccccccee-ecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCC
Q psy682 11 VWRTFNLALLYAF-PSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANH 88 (330)
Q Consensus 11 lW~~~~g~~l~tl-~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~ 88 (330)
.|+. +|+++.+| .+|.+.|++++|+| ||++ +||++.
T Consensus 47 ~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~-----------------------------------------l~s~s~ 84 (437)
T 3gre_A 47 MGNL-RGKLIATLMENEPNSITSSAVSPGETPY-----------------------------------------LITGSD 84 (437)
T ss_dssp GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCE-----------------------------------------EEEEET
T ss_pred cccc-cceEEeeeccCCCCceEEEEECCCCCCE-----------------------------------------EEEecC
Confidence 4764 56777777 77777777777777 6665 488889
Q ss_pred cceEEEeCCCC---CC-c--ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceec--cCCCCccceeee-----
Q psy682 89 QFAINRWNPDY---AA-S--IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRH--LGDNFSQKLRVR----- 154 (330)
Q Consensus 89 ~~tv~lW~~~~---~~-~--~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~--l~~~~~~~~~~~----- 154 (330)
|++|++|+... .. . ....+|. ..+.++.|+||+. +++++.++...+|... ..+........+
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTYDCS----STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEEECS----SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceEEEeECcccccCcccceeeeccCC----CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 99999999865 22 1 1122565 4678899999998 6654555444444321 011111111111
Q ss_pred ----------eeEEE--EecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcE--EE-e---HHHHHhhhccCC
Q psy682 155 ----------HNCFV--TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRL--FS-S---ISLAWKNCQRDT 214 (330)
Q Consensus 155 ----------~~~~~--~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~V--ia-S---t~~lW~~SgS~D 214 (330)
..+++ +++|+++ +++|+.|++|++ |++.+++++..+.+ |.+.| ++ + ...+ +|+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i-wd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~---s~~~d 235 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSL-LVALTNLSRVII-FDIRTLERLQIIENSPRHGAVSSICIDEECCVLI---LGTTR 235 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEE-EEEEETTSEEEE-EETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE---EEETT
T ss_pred EccCcccccCceEEEEEEcCCCCE-EEEEeCCCeEEE-EeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE---EEcCC
Confidence 11222 5678988 555668999999 99999999999998 78877 21 2 3333 89999
Q ss_pred CcEEEEcc-cCceeeecC-CCCCCCCCcEE----EeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682 215 SDVKVHTT-FGDLLRSLD-PPSGFASPESV----VMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 215 gtvkl~~~-~G~ll~tL~-~h~~~~~v~~v----~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~ 275 (330)
|+|+||+. +|++++++. +|.. .|.+| +|+|||+.|++++ ++.+++|..+ |+.+..+..+
T Consensus 236 g~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 302 (437)
T 3gre_A 236 GIIDIWDIRFNVLIRSWSFGDHA--PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS 302 (437)
T ss_dssp SCEEEEETTTTEEEEEEBCTTCE--EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred CeEEEEEcCCccEEEEEecCCCC--ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence 99999975 799999987 7776 89999 6667899999995 7789999986 7777777644
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2e-19 Score=162.23 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=159.3
Q ss_pred cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
+++.+|.+|.+.|++++| ||++. ........|...+..++|+|++..+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l------------- 74 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELL------------- 74 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEE-------------
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEE-------------
Confidence 678889999999999999 88877 1122344677788888888888875
Q ss_pred cEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee
Q psy682 80 SVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR 154 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~ 154 (330)
++++.++.|++|+..... .....+|.. .+.++.| |+. +++++.++. +..+..+ .....+..+
T Consensus 75 ----~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~--~~~~l~~~~~d~~--i~~~d~~-~~~~~~~~~ 141 (313)
T 3odt_A 75 ----LFGGKDTMINGVPLFATSGEDPLYTLIGHQG----NVCSLSF--QDGVVISGSWDKT--AKVWKEG-SLVYNLQAH 141 (313)
T ss_dssp ----EEEETTSCEEEEETTCCTTSCC-CEECCCSS----CEEEEEE--ETTEEEEEETTSE--EEEEETT-EEEEEEECC
T ss_pred ----EEecCCCeEEEEEeeecCCCCcccchhhccc----CEEEEEe--cCCEEEEEeCCCC--EEEEcCC-cEEEecccC
Confidence 777888999999875432 445557764 5566777 444 555344333 3334322 122223333
Q ss_pred e---eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccC-CCCcE----EEe--HHHHHhhhccCCCcEEEEcc-
Q psy682 155 H---NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFD-HPNRL----FSS--ISLAWKNCQRDTSDVKVHTT- 222 (330)
Q Consensus 155 ~---~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-H~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~- 222 (330)
. .++++.| +++++ ++++.|++|++ |+. ++....+.+ |...| +.. . .+ +|+.||+|++|+.
T Consensus 142 ~~~v~~~~~~~~~~~~l-~~~~~d~~i~i-~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 142 NASVWDAKVVSFSENKF-LTASADKTIKL-WQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FI---SCSNDGLIKLVDMH 213 (313)
T ss_dssp SSCEEEEEEEETTTTEE-EEEETTSCEEE-EET--TEEEEEECSSCSSCEEEEEEEETTE-EE---EEETTSEEEEEETT
T ss_pred CCceeEEEEccCCCCEE-EEEECCCCEEE-Eec--CceEEEEeccCcccEEEEEEcCCCe-EE---EccCCCeEEEEECC
Confidence 2 4677777 88884 55668999999 994 566667777 88877 222 3 33 8999999999976
Q ss_pred cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeeccCcc
Q psy682 223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHESHND 276 (330)
Q Consensus 223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~~~~ 276 (330)
+|++++++.+|.+ .|.+++|+|+|++++.+.++.++.|.. +|+.+.....+.
T Consensus 214 ~~~~~~~~~~~~~--~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 214 TGDVLRTYEGHES--FVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp TCCEEEEEECCSS--CEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred chhhhhhhhcCCc--eEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 6999999999998 999999999997665557999999985 677777776553
No 101
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.82 E-value=1.2e-19 Score=172.75 Aligned_cols=240 Identities=9% Similarity=0.012 Sum_probs=167.1
Q ss_pred CcccCCCcEEEeecccccccc-----eeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682 1 MSGGDKGIVEVWRTFNLALLY-----AFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL 57 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~-----tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v 57 (330)
++++.|++|++|++.+|+.+. .+.+|...|++++|+|+|++ ..+.....+...+..+
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 357788999999999998877 56799999999999999987 1112233566677778
Q ss_pred EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCc-eeccCCCC-
Q psy682 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPI-LTHPTSNN- 134 (330)
Q Consensus 58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~- 134 (330)
.|+|+++.+ .++++.+++|++|+........ ...+. .+..+.|+||+. +++++.+.
T Consensus 218 ~~~~~~~~l----------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 218 LYDPIRDLV----------------YCSNWISEDISVIDRKTKLEIRKTDKIG-----LPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp EEETTTTEE----------------EEEETTTTEEEEEETTTTEEEEECCCCS-----EEEEEEECTTSSEEEEEEEESC
T ss_pred EEcCCCCEE----------------EEEecCCCcEEEEECCCCcEEEEecCCC-----CceEEEEcCCCCEEEEEECCCC
Confidence 888888764 4566678899999986555333 33332 367899999997 54432211
Q ss_pred -----CCCcceeccCC-CCccce--eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee-
Q psy682 135 -----NAPVPKRHLGD-NFSQKL--RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS- 202 (330)
Q Consensus 135 -----~~~~~~~~l~~-~~~~~~--~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS- 202 (330)
+..+..+.+.. .....+ .....+++|+||+++++++++.|++|++ |++++++++..+. |...+ + .+
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v-~d~~~~~~~~~~~-~~~~~~~~~~s~ 354 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV-YDLKEKKVQKSIP-VFDKPNTIALSP 354 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE-EETTTTEEEEEEE-CSSSEEEEEECT
T ss_pred ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEE-EECCCCcEEEEec-CCCCCCeEEEcC
Confidence 11233444321 111111 1223578899999988898889999999 9999888876664 43333 1 01
Q ss_pred -HHHHHh-------------hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682 203 -ISLAWK-------------NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 265 (330)
Q Consensus 203 -t~~lW~-------------~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n 265 (330)
--.++- .+|+.||+|++|+. +|+.+.++.++ . .|..++|+|||+.|+.+ .++.+..|.++
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~--~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-N--QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-S--SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-C--CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 000000 15667899999976 78999998874 3 68999999999988766 38999999987
Q ss_pred C
Q psy682 266 G 266 (330)
Q Consensus 266 G 266 (330)
|
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 6
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.82 E-value=2.1e-20 Score=174.91 Aligned_cols=168 Identities=8% Similarity=-0.069 Sum_probs=114.8
Q ss_pred CcccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682 1 MSGGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH 77 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~ 77 (330)
|+|+.||+|++|++.+++ ....+.+|...|++++|+|||++
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------ 114 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK------------------------------------ 114 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSC------------------------------------
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCE------------------------------------
Confidence 578999999999999877 67778899999999999998887
Q ss_pred CCcEEEEEcCCcceEEEeCCCCCC----cccCCC-CCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC-------
Q psy682 78 MPSVVTVTANHQFAINRWNPDYAA----SIQSPS-YAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG------- 144 (330)
Q Consensus 78 ~~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~-h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~------- 144 (330)
+++++.|++|++|+.+... .....+ |. ..+.++.|+||+. +++++.++. +..|.+.
T Consensus 115 -----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~ 183 (377)
T 3dwl_C 115 -----FAVGSGARVISVCYFEQENDWWVSKHLKRPLR----STILSLDWHPNNVLLAAGCADRK--AYVLSAYVRDVDAK 183 (377)
T ss_dssp -----CEEEESSSCEEECCC-----CCCCEEECSSCC----SCEEEEEECTTSSEEEEEESSSC--EEEEEECCSSCC-C
T ss_pred -----EEEEecCCeEEEEEECCcccceeeeEeecccC----CCeEEEEEcCCCCEEEEEeCCCE--EEEEEEEecccCCC
Confidence 3777788899999998764 455555 76 4677899999998 665444443 3344431
Q ss_pred ------------CCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccc----cccccCCCCcE----EE
Q psy682 145 ------------DNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPNRL----FS 201 (330)
Q Consensus 145 ------------~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d~V----ia 201 (330)
+.....+ .| ..+++|+|||++ +++|+.|++|++ |++.+++. +..+.+|.+.| +.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~v~~~~~s 260 (377)
T 3dwl_C 184 PEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTI-AYPSAPEQPPRALITVKLSQLPLRSLLWA 260 (377)
T ss_dssp CCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC--CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred ccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEE-EECCCCCCcceeeEeecCCCCceEEEEEc
Confidence 0011111 22 358899999998 555668999999 99999987 89999999987 22
Q ss_pred e--HHHHHhhhccCCCcEEEEc
Q psy682 202 S--ISLAWKNCQRDTSDVKVHT 221 (330)
Q Consensus 202 S--t~~lW~~SgS~Dgtvkl~~ 221 (330)
. ...+ +|+.|+.+++|.
T Consensus 261 ~~~~~l~---~~~~~~~~~~~~ 279 (377)
T 3dwl_C 261 NESAIVA---AGYNYSPILLQG 279 (377)
T ss_dssp ETTEEEE---EESSSSEEEECC
T ss_pred CCCCEEE---EEcCCcEEEEEe
Confidence 2 3333 788777775444
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=178.14 Aligned_cols=242 Identities=10% Similarity=0.014 Sum_probs=158.5
Q ss_pred cccCCCcEEEeeccc--ccccceeecCCCceeEEEeCCCCCc------------------C-----------cceeeeec
Q psy682 2 SGGDKGIVEVWRTFN--LALLYAFPSCDSSVRSLALSHDQKY------------------S-----------PMMFSTVL 50 (330)
Q Consensus 2 sgs~d~~V~lW~~~~--g~~l~tl~gH~~~V~svafSpdg~~------------------~-----------~l~~~~~~ 50 (330)
+|-.++...-|+... ++... --.|.+.|++|+|||||++ . .+..+.+|
T Consensus 2 ~~~~~~~~~~w~~~q~~~~~~~-~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h 80 (447)
T 3dw8_B 2 AGAGGGNDIQWCFSQVKGAVDD-DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH 80 (447)
T ss_dssp ------CCCCCEEEECCSCSSS-CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECC
T ss_pred CCCCCCcceeEEEEEecccccc-cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccc
Confidence 344444455566532 12111 1347899999999999988 0 12234466
Q ss_pred C------------ccEEEEEeCCCC--CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-------------
Q psy682 51 D------------DVCMSLKFPSNS--PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI------------- 103 (330)
Q Consensus 51 ~------------d~~~~v~Fs~~~--~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~------------- 103 (330)
. +.|..++|+|++ .. +++++.|++|++|+.......
T Consensus 81 ~~~~~~~~~~~~~~~V~~l~~~~~~~~~~-----------------l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~ 143 (447)
T 3dw8_B 81 EPEFDYLKSLEIEEKINKIRWLPQKNAAQ-----------------FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRY 143 (447)
T ss_dssp CCEEEGGGTEEECCCCCEEEECCCCSSSE-----------------EEEEECSSCEEEEEEEEEEEEEECCSCC------
T ss_pred cccccccccccccCceEEEEEcCCCCcce-----------------EEEeCCCCeEEEEecccccCCcceecccCccccc
Confidence 5 667777888776 44 367788999999998642221
Q ss_pred ---------------------------c-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC--CCCcc----
Q psy682 104 ---------------------------Q-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--DNFSQ---- 149 (330)
Q Consensus 104 ---------------------------~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~--~~~~~---- 149 (330)
. ..+|. ..+.++.|+||+.+.+.+ .+..+..|.+. +...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~ 217 (447)
T 3dw8_B 144 RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT----YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDI 217 (447)
T ss_dssp --CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS----SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEEC
T ss_pred cCcccccceEeccccchheeeeccceEEeccCCC----cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeec
Confidence 1 34776 467789999999944322 33344455543 10000
Q ss_pred ---ceeee---eeEEEEecCC-CeEEEeeccCCeEEEeeecccccc----cccccCCCC------------cE--E--Ee
Q psy682 150 ---KLRVR---HNCFVTTVDS-RFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPN------------RL--F--SS 202 (330)
Q Consensus 150 ---~~~~~---~~~~~~spDg-~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d------------~V--i--aS 202 (330)
.+..+ ..+++|+||+ ++ +++|+.|++||+ |++.++++ ...+.+|.+ .| + ..
T Consensus 218 ~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (447)
T 3dw8_B 218 KPANMEELTEVITAAEFHPNSCNT-FVYSSSKGTIRL-CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295 (447)
T ss_dssp CCSSGGGCCCCEEEEEECSSCTTE-EEEEETTSCEEE-EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT
T ss_pred ccccccccCcceEEEEECCCCCcE-EEEEeCCCeEEE-EECcCCccccceeeEeccCCCccccccccccCceEEEEEECC
Confidence 12222 3688999999 66 666778999999 99998887 788889986 55 1 11
Q ss_pred --HHHHHhhhccCCCcEEEEcc--cCceeeecCCCCCCC-------------CCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682 203 --ISLAWKNCQRDTSDVKVHTT--FGDLLRSLDPPSGFA-------------SPESVVMSREGVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~~h~~~~-------------~v~~v~fS~dG~~l~s~~-~~~~~~~s~ 264 (330)
...+ +|+. |+|+||+. .|+.++++.+|.... .+..++|||||+.||+++ ++.+++|..
T Consensus 296 ~g~~l~---~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 296 SGRYMM---TRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp TSSEEE---EEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred CCCEEE---EeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 3333 7888 99999976 399999999996510 133499999999999985 889999998
Q ss_pred CCceeeecc
Q psy682 265 NGNRLRHES 273 (330)
Q Consensus 265 nG~~las~~ 273 (330)
+...+..+.
T Consensus 372 ~~~~~~~~~ 380 (447)
T 3dw8_B 372 NTKRDITLE 380 (447)
T ss_dssp TTCCEEEEE
T ss_pred CCCcceeee
Confidence 776555544
No 104
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.82 E-value=6.5e-20 Score=168.65 Aligned_cols=218 Identities=8% Similarity=0.019 Sum_probs=151.1
Q ss_pred eecCCCceeEEEeCCC---CCc-------------------Ccceeee-----ecCccEEEEEeCCCCCeeEeeecccee
Q psy682 23 FPSCDSSVRSLALSHD---QKY-------------------SPMMFST-----VLDDVCMSLKFPSNSPICHVTANTYVT 75 (330)
Q Consensus 23 l~gH~~~V~svafSpd---g~~-------------------~~l~~~~-----~~~d~~~~v~Fs~~~~v~~~~~~~~~~ 75 (330)
..+|.+.|++++|+|+ +.. ..+.... .|+..|..++|+|++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------- 82 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN----------- 82 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT-----------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC-----------
Confidence 4599999999999995 442 0111111 1345566666666632
Q ss_pred ccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCC-Cccce
Q psy682 76 LHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDN-FSQKL 151 (330)
Q Consensus 76 ~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~-~~~~~ 151 (330)
.++..+++++.+++|++|+.+... +..+.+|. ..+.++.|+| |+. +++++.++. +..|.+... ....+
T Consensus 83 --~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 83 --TSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG----NAINELKFHPRDPNLLLSVSKDHA--LRLWNIQTDTLVAIF 154 (366)
T ss_dssp --TCCEEEEEEETTCEEEEECTTTCCEEEEEESCC----SCEEEEEECSSCTTEEEEEETTSC--EEEEETTTTEEEEEE
T ss_pred --CCCCEEEEecCCCEEEEEEchhceEeeeecCCC----CcEEEEEECCCCCCEEEEEeCCCe--EEEEEeecCeEEEEe
Confidence 012345888889999999987555 44555787 4677899999 888 555444443 344443221 11111
Q ss_pred ---eee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----------------------------CCC
Q psy682 152 ---RVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----------------------------HPN 197 (330)
Q Consensus 152 ---~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----------------------------H~d 197 (330)
..+ ..+++|+||+++|++ |+.|++|++ |++.+++....+.. |.+
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDLLGEKIMS-CGMDHSLKL-WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp CSTTSCSSCEEEEEECTTSSEEEE-EETTSCEEE-EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred cccccccCceeEEEECCCCCEEEE-ecCCCCEEE-EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 122 358889999999554 557999999 99998887665554 777
Q ss_pred cE--EE--eHHHHHhhhccCCCcEEEEcc-cC--------------ceeeecCCCCCCCCCcEEEeCCC--ccEEEEcc-
Q psy682 198 RL--FS--SISLAWKNCQRDTSDVKVHTT-FG--------------DLLRSLDPPSGFASPESVVMSRE--GVIVVNYE- 255 (330)
Q Consensus 198 ~V--ia--St~~lW~~SgS~Dgtvkl~~~-~G--------------~ll~tL~~h~~~~~v~~v~fS~d--G~~l~s~~- 255 (330)
.| ++ ....+ +|+.||+|++|+. ++ .++.++.+|.. .|.+++|+|| |++|++++
T Consensus 233 ~v~~~~~~~~~l~---~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 233 YVDCVRWLGDLIL---SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CCCEEEEETTEEE---EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECT
T ss_pred eEEEEEEcCCEEE---EEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEec
Confidence 76 21 23333 8999999999975 33 45889999988 8999999999 99999985
Q ss_pred CCeEEEEeeCC
Q psy682 256 RGHIAAFTMNG 266 (330)
Q Consensus 256 ~~~~~~~s~nG 266 (330)
++.+++|.++.
T Consensus 308 dg~i~vwd~~~ 318 (366)
T 3k26_A 308 VGKLYVWDLEV 318 (366)
T ss_dssp TSCEEEEECCS
T ss_pred CCcEEEEECCC
Confidence 88999999875
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.81 E-value=1e-19 Score=175.14 Aligned_cols=219 Identities=11% Similarity=0.087 Sum_probs=145.8
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCC--------Cc---------CcceeeeecCccEEEEEeCCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQ--------KY---------SPMMFSTVLDDVCMSLKFPSNS 63 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg--------~~---------~~l~~~~~~~d~~~~v~Fs~~~ 63 (330)
|+|+.||+|+||++.+++.+.++.+|...|.++++++.- .. ..+..+.+|.+.+..+.|+|++
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence 589999999999999999999999999999998886521 11 1223456788888888888888
Q ss_pred CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccCCCc-e-eccCCCCCC
Q psy682 64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTLDPI-L-THPTSNNNA 136 (330)
Q Consensus 64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~D~~-l-~~~s~~~~~ 136 (330)
..+ ++++.|+.|++|+..... +.....|. ..+.++.|+|+.. + ++++++.+.
T Consensus 243 ~~l-----------------~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~----~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 243 RHL-----------------ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp SEE-----------------EEEETTSCEEEEESSCCSSCSCCSEEECCCS----SCEEEEEECTTCTTEEEEEECTTTC
T ss_pred Cee-----------------eeeeccccceEEeeccccccceeeeeecccC----CceeeeeeCCCcccEEEEEeecCCC
Confidence 874 888889999999986543 23334565 4677899999876 3 332222333
Q ss_pred CcceeccCCC-Cccceeee--eeEEEEecCCCeEEEe-eccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHH
Q psy682 137 PVPKRHLGDN-FSQKLRVR--HNCFVTTVDSRFLLAC-GFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLA 206 (330)
Q Consensus 137 ~~~~~~l~~~-~~~~~~~~--~~~~~~spDg~~i~as-g~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~l 206 (330)
.+..|.+... ....+..+ ..+..++|+++.++++ |+.|++|++ |++.+++++.++.||.+.|. + + ...+
T Consensus 302 ~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i-wd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI-WKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE-EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 3444544221 11112222 2467789999987654 668999999 99999999999999999992 2 2 3444
Q ss_pred HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC
Q psy682 207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR 246 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~ 246 (330)
|||.|||||||+. +.+..+..+.+.. .+....|..
T Consensus 381 ---S~s~D~tvriWdv~~~~~~~~~~~~~~--~~~~~s~~~ 416 (420)
T 4gga_A 381 ---SAAADETLRLWRCFELDPARRREREKA--SAAKSSLIH 416 (420)
T ss_dssp ---EEETTTEEEEECCSCSSCC-------------------
T ss_pred ---EEecCCeEEEEECCCCCccchhhhccC--CccccccCC
Confidence 9999999999986 4556666666555 333334433
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=163.46 Aligned_cols=197 Identities=10% Similarity=0.073 Sum_probs=137.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeCCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFPSNS 63 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs~~~ 63 (330)
|||+.||+|++|++.+|+.+.++.+|...+.++++.++.-. ..+....+|...+..+.|++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 58999999999999999999999999999988777553111 1123355788888888888888
Q ss_pred CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-ee-ccCCCCCC
Q psy682 64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LT-HPTSNNNA 136 (330)
Q Consensus 64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~-~~s~~~~~ 136 (330)
..+ ++++.|++|++|+...+... ....|. ..+..+.++++.. +. .++++...
T Consensus 163 ~~l-----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 163 RHL-----------------ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp SEE-----------------EEEETTSCEEEEESSCBTTBSCCSEEECCCC----SCEEEEEECTTSTTEEEEEECTTTC
T ss_pred CEE-----------------EEEecCcceeEEECCCCcccccceeeecccC----CceEEEEecCCCCcEEEEEecCCCC
Confidence 864 88888999999998654322 122333 3556778888776 32 22232222
Q ss_pred CcceeccCCCCccceeee---eeEEEEecCCCeEEE-eeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHH
Q psy682 137 PVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLA-CGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLA 206 (330)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~a-sg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~l 206 (330)
.+..+............+ ..+..++|+++.+++ +|+.|++|++ |++.++++++++.||.+.|. + + ...+
T Consensus 222 ~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i-wd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI-WKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEE-EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 233343322111111111 246778999988665 4678999999 99999999999999999982 1 2 3444
Q ss_pred HhhhccCCCcEEEEcc
Q psy682 207 WKNCQRDTSDVKVHTT 222 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~~ 222 (330)
|||.||+||||+.
T Consensus 301 ---S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 301 ---SAAADETLRLWRC 313 (318)
T ss_dssp ---EEETTTEEEEECC
T ss_pred ---EEecCCeEEEEEC
Confidence 9999999999986
No 107
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.81 E-value=9.1e-20 Score=171.05 Aligned_cols=227 Identities=11% Similarity=0.002 Sum_probs=161.7
Q ss_pred ccceeecCCCceeEEEeCCCCCc-----------------C------cceeeeecCccEEEEEeCCC----C---CeeEe
Q psy682 19 LLYAFPSCDSSVRSLALSHDQKY-----------------S------PMMFSTVLDDVCMSLKFPSN----S---PICHV 68 (330)
Q Consensus 19 ~l~tl~gH~~~V~svafSpdg~~-----------------~------~l~~~~~~~d~~~~v~Fs~~----~---~v~~~ 68 (330)
...++.+|.+.|++|+|+| ..+ . .+....+|...|..+.|+|+ + ..
T Consensus 8 ~~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~--- 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL--- 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE---
T ss_pred hhhhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE---
Confidence 4556889999999999999 222 1 23334467777777777777 6 55
Q ss_pred eeccceeccCCcEEEEEcCCcceEEEeCCCCCC------cccCCCCCCCC-CCCCCCcccc----CCCce--eccCCCCC
Q psy682 69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAA------SIQSPSYAETP-GSPPGNLPLT----LDPIL--THPTSNNN 135 (330)
Q Consensus 69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~------~~~~~~h~~~~-~~~~~~l~fs----~D~~l--~~~s~~~~ 135 (330)
+++++.+++|++|+.+... .....+|.... ...+.++.|+ ||+.+ ++++.++.
T Consensus 84 --------------l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (397)
T 1sq9_A 84 --------------VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 149 (397)
T ss_dssp --------------EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred --------------EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc
Confidence 4778889999999987666 55556773100 1467789999 99985 43333333
Q ss_pred CCcceeccCC-------CCcc-----ceee----------eeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682 136 APVPKRHLGD-------NFSQ-----KLRV----------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF 193 (330)
Q Consensus 136 ~~~~~~~l~~-------~~~~-----~~~~----------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~ 193 (330)
+..|.+.. .... ++.. ...+++++||+ + +++|+.|++|++ |++.+++.+..+.
T Consensus 150 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~i~i-~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 150 --TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-IATGFNNGTVQI-SELSTLRPLYNFE 224 (397)
T ss_dssp --EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-EEEECTTSEEEE-EETTTTEEEEEEE
T ss_pred --EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-EEEEeCCCcEEE-EECCCCceeEEEe
Confidence 33333322 1112 3322 13589999999 6 666778999999 9999999999998
Q ss_pred C---C---CCcE--E--Ee--HHHHHhhhccCC---CcEEEEcc-cCceeeecCC-------------CCCCCCCcEEEe
Q psy682 194 D---H---PNRL--F--SS--ISLAWKNCQRDT---SDVKVHTT-FGDLLRSLDP-------------PSGFASPESVVM 244 (330)
Q Consensus 194 g---H---~d~V--i--aS--t~~lW~~SgS~D---gtvkl~~~-~G~ll~tL~~-------------h~~~~~v~~v~f 244 (330)
+ | ...| + .. ...+ +|+.| |+|++|+. +++.++++.+ |.+ .|.+++|
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~---~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 299 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLA---IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSF 299 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEE---EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEE
T ss_pred ccccccccCCccceEEECCCCCEEE---EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEE
Confidence 8 8 8777 2 11 3333 88999 99999975 7999999999 888 9999999
Q ss_pred CCCccEEEEcc-CCeEEEEee-CCceeeecc
Q psy682 245 SREGVIVVNYE-RGHIAAFTM-NGNRLRHES 273 (330)
Q Consensus 245 S~dG~~l~s~~-~~~~~~~s~-nG~~las~~ 273 (330)
+|||+.|++++ ++.+++|.+ +|+.+..+.
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 99999999995 889999987 466666665
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.7e-20 Score=168.95 Aligned_cols=198 Identities=11% Similarity=-0.043 Sum_probs=140.8
Q ss_pred ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeC
Q psy682 17 LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN 96 (330)
Q Consensus 17 g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~ 96 (330)
|+++.++.+|.+.|++++|||||++ +|+++.|++|++|+
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~-----------------------------------------l~~~~~dg~i~iw~ 39 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKR-----------------------------------------LATCSSDKTIKIFE 39 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSE-----------------------------------------EEEEETTSCEEEEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCE-----------------------------------------EEEEECCCcEEEEe
Confidence 5677889999999999999998877 47778889999999
Q ss_pred CCCC---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC-Cccceeee---eeEEEEecC--C
Q psy682 97 PDYA---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN-FSQKLRVR---HNCFVTTVD--S 164 (330)
Q Consensus 97 ~~~~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~-~~~~~~~~---~~~~~~spD--g 164 (330)
.+.. ....+.+|. ..+.++.|+++ +. +++++.++...+|....+.. ....+..+ ..+++|+|+ +
T Consensus 40 ~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 40 VEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp EETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred cCCCcceeeeEecCCC----CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 8632 244556887 46778999987 66 66545555444443332210 11222222 258899999 8
Q ss_pred CeEEEeeccCCeEEEeeeccccc--ccccccCCCCcEE----Ee---------------HHHHHhhhccCCCcEEEEccc
Q psy682 165 RFLLACGFWDNSFREPFTTMYLA--LQEGKFDHPNRLF----SS---------------ISLAWKNCQRDTSDVKVHTTF 223 (330)
Q Consensus 165 ~~i~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~Vi----aS---------------t~~lW~~SgS~Dgtvkl~~~~ 223 (330)
++ +++|+.|++|++ |++.+++ ....+.+|...|. .. ...+ +|+.||+|++|+..
T Consensus 116 ~~-l~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~dg~i~i~d~~ 190 (379)
T 3jrp_A 116 PL-LLVASSDGKVSV-VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV---TGGADNLVKIWKYN 190 (379)
T ss_dssp SE-EEEEETTSEEEE-EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE---EEETTSCEEEEEEE
T ss_pred CE-EEEecCCCcEEE-EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE---EEeCCCeEEEEEec
Confidence 88 555668999999 9998763 3446678888772 11 1222 89999999999763
Q ss_pred -C----ceeeecCCCCCCCCCcEEEeCCC---ccEEEEcc-CCeEEEEeeCC
Q psy682 224 -G----DLLRSLDPPSGFASPESVVMSRE---GVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 224 -G----~ll~tL~~h~~~~~v~~v~fS~d---G~~l~s~~-~~~~~~~s~nG 266 (330)
+ .++.++.+|.+ .|.+++|+|+ |+.|++++ ++.+.+|..+.
T Consensus 191 ~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 191 SDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp TTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCcceeeEEEEecccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 3 46789999998 9999999999 89999985 77788887665
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=165.18 Aligned_cols=246 Identities=9% Similarity=0.086 Sum_probs=168.5
Q ss_pred cEEEeecccccccceeecCCCceeEEEeCCC---CCc----------------C-c--c-eeeeecCccEEEEEeCCCCC
Q psy682 8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHD---QKY----------------S-P--M-MFSTVLDDVCMSLKFPSNSP 64 (330)
Q Consensus 8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpd---g~~----------------~-~--l-~~~~~~~d~~~~v~Fs~~~~ 64 (330)
.+..|+....+.+..+.+|.+.|++|+|+|| |++ . . + ....+|...|..++|+|+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC
Confidence 3445666667788889999999999999999 465 1 1 1 23457888888888888888
Q ss_pred eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccc--cCCCc-eeccCCCCCCCccee
Q psy682 65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL--TLDPI-LTHPTSNNNAPVPKR 141 (330)
Q Consensus 65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f--s~D~~-l~~~s~~~~~~~~~~ 141 (330)
.+ ++++.|++|++|+.+........+|. ..+.++.| ++|+. +++++.++. +..|
T Consensus 100 ~l-----------------~s~~~dg~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~dg~--i~vw 156 (368)
T 3mmy_A 100 KV-----------------FTASCDKTAKMWDLSSNQAIQIAQHD----APVKTIHWIKAPNYSCVMTGSWDKT--LKFW 156 (368)
T ss_dssp EE-----------------EEEETTSEEEEEETTTTEEEEEEECS----SCEEEEEEEECSSCEEEEEEETTSE--EEEE
T ss_pred EE-----------------EEEcCCCcEEEEEcCCCCceeecccc----CceEEEEEEeCCCCCEEEEccCCCc--EEEE
Confidence 65 78888999999999888877777887 46778999 99988 665444443 3344
Q ss_pred ccC-CCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEEE--e------HHHHHh
Q psy682 142 HLG-DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLFS--S------ISLAWK 208 (330)
Q Consensus 142 ~l~-~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Via--S------t~~lW~ 208 (330)
.+. +.....+..+..++++.+.+..+++ +..|+.+++ |++.... .......|...+++ . ...+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 232 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPERCYCADVIYPMAVV-ATAERGLIV-YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA-- 232 (368)
T ss_dssp CSSCSSCSEEEECSSCEEEEEEETTEEEE-EEGGGCEEE-EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE--
T ss_pred ECCCCcEEEEEecCCCceEEEecCCeeEE-EeCCCcEEE-EEeccccchhhhccccccCCCceEEEcccCCCCCCeEE--
Confidence 432 2223344545555555555666454 457999999 9997542 22223334333321 1 1133
Q ss_pred hhccCCCcEEEEccc-C---ceeeecCCCCCCC----------CCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceeeec
Q psy682 209 NCQRDTSDVKVHTTF-G---DLLRSLDPPSGFA----------SPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHE 272 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~~-G---~ll~tL~~h~~~~----------~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~ 272 (330)
+|+.||+|++|+.+ + +.+.++.+|.... .|.+++|+|||+.||+++ ++.+++|..+ |+.+..+
T Consensus 233 -~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 233 -LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp -EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred -EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 89999999999864 3 6788888886511 599999999999999995 8889999866 6777776
Q ss_pred cCc-cccccc
Q psy682 273 SHN-DNLQEL 281 (330)
Q Consensus 273 ~~~-~dVkEL 281 (330)
..+ ..+..+
T Consensus 312 ~~~~~~v~~~ 321 (368)
T 3mmy_A 312 EQLDQPISAC 321 (368)
T ss_dssp CCCSSCEEEE
T ss_pred cCCCCCceEE
Confidence 643 334443
No 110
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=163.66 Aligned_cols=214 Identities=8% Similarity=0.041 Sum_probs=146.4
Q ss_pred ceeecCCCceeEEEeCCCCCc----C-------cce-----------e-eeecCccEEEEEeCCC---CCeeEeeeccce
Q psy682 21 YAFPSCDSSVRSLALSHDQKY----S-------PMM-----------F-STVLDDVCMSLKFPSN---SPICHVTANTYV 74 (330)
Q Consensus 21 ~tl~gH~~~V~svafSpdg~~----~-------~l~-----------~-~~~~~d~~~~v~Fs~~---~~v~~~~~~~~~ 74 (330)
..+++|...|.+++|+|||.. . .+. . ..+|.+.|..+.|+|+ +..
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------- 82 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRY--------- 82 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCC---------
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCce---------
Confidence 456899999999999999864 0 000 0 1155666666777766 354
Q ss_pred eccCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCc------cccCCCc-eeccCCCCCCCcceeccCC
Q psy682 75 TLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNL------PLTLDPI-LTHPTSNNNAPVPKRHLGD 145 (330)
Q Consensus 75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l------~fs~D~~-l~~~s~~~~~~~~~~~l~~ 145 (330)
+++++.+++|++|+.+... .....+|.+ .+.++ .|++|+. +++++.++. +..|.+..
T Consensus 83 --------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~s~~~~~l~~~~~d~~--i~vwd~~~ 148 (357)
T 3i2n_A 83 --------LATGDFGGNLHIWNLEAPEMPVYSVKGHKE----IINAIDGIGGLGIGEGAPEIVTGSRDGT--VKVWDPRQ 148 (357)
T ss_dssp --------EEEEETTSCEEEECTTSCSSCSEEECCCSS----CEEEEEEESGGGCC-CCCEEEEEETTSC--EEEECTTS
T ss_pred --------EEEecCCCeEEEEeCCCCCccEEEEEeccc----ceEEEeeccccccCCCccEEEEEeCCCe--EEEEeCCC
Confidence 4888889999999997654 556668875 45555 7899998 555444443 33444322
Q ss_pred C--Cccceee-------eeeEEE----EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-----H
Q psy682 146 N--FSQKLRV-------RHNCFV----TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS-----I 203 (330)
Q Consensus 146 ~--~~~~~~~-------~~~~~~----~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS-----t 203 (330)
. ....+.. ...+++ ++||+++ +++|+.|++|++ |++.++++.. ..+|...| +.. .
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i-~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKL-FDLRNMALRW-ETNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEE-EETTTTEEEE-EEECSSCEEEEEESCSSSSCC
T ss_pred CCCcceeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEE-EECccCceee-ecCCCCceEEEEcCCCCCCCC
Confidence 1 2222221 123455 6799998 555668999999 9998887743 46777776 221 2
Q ss_pred HHHHhhhccCCCcEEEEcc-cCceeeecC-----CCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeC
Q psy682 204 SLAWKNCQRDTSDVKVHTT-FGDLLRSLD-----PPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMN 265 (330)
Q Consensus 204 ~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~-----~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~n 265 (330)
..+ +|+.||+|++|+. +++.++++. +|.. .|.+++|+|+|. ++++++ ++.+++|.++
T Consensus 226 ~l~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 226 KLV---ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEE---EEESTTEEEEEEEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EEE---EECCCCeEEEEeCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 223 8999999999975 566666665 8988 999999999999 788875 8899999876
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.7e-19 Score=172.06 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=146.6
Q ss_pred CcccCCCcEEEeecc--cccccceee--cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682 1 MSGGDKGIVEVWRTF--NLALLYAFP--SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL 76 (330)
Q Consensus 1 asgs~d~~V~lW~~~--~g~~l~tl~--gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~ 76 (330)
|+|+.||+|++|++. +|+.+..+. +|...|.+++|+|||+.
T Consensus 119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----------------------------------- 163 (450)
T 2vdu_B 119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT----------------------------------- 163 (450)
T ss_dssp EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE-----------------------------------
T ss_pred EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE-----------------------------------
Confidence 478899999999998 888888887 66788999999998877
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCC---Cc-eeccCCCCCCCcceeccCCCC
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLD---PI-LTHPTSNNNAPVPKRHLGDNF 147 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D---~~-l~~~s~~~~~~~~~~~l~~~~ 147 (330)
+++++.++.|++|+....... ...+|. ..+.++.|+|| +. +++++.++...+|....+...
T Consensus 164 ------l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 164 ------VIIADKFGDVYSIDINSIPEEKFTQEPILGHV----SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp ------EEEEETTSEEEEEETTSCCCSSCCCCCSEECS----SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred ------EEEEeCCCcEEEEecCCcccccccceeeeccc----CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 366677888999987654433 455786 46778999999 86 665444443333332222211
Q ss_pred ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC-------------------------CcE
Q psy682 148 SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-------------------------NRL 199 (330)
Q Consensus 148 ~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-------------------------d~V 199 (330)
...+.+| ..+++|+ |+++|+ +|+.|++|++ |++.+|++++.+..|. ..|
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~-s~~~d~~v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLL-SAGGDDKIFA-WDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEE-EEESSSEEEE-EETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eeeecCCCCceEEEEEC-CCCEEE-EEeCCCeEEE-EECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 1112233 2588899 999955 5568999999 9999998877765331 112
Q ss_pred --EE--e--HHHHHhhhcc-CCCcEEEEcc---cC---ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-------CCeE
Q psy682 200 --FS--S--ISLAWKNCQR-DTSDVKVHTT---FG---DLLRSLDPPSGFASPESVVMSREGVIVVNYE-------RGHI 259 (330)
Q Consensus 200 --ia--S--t~~lW~~SgS-~Dgtvkl~~~---~G---~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-------~~~~ 259 (330)
++ . ...+ +++ .|++|+||+. ++ +++.++.+| + .|.+++|+|++.+++.++ +..+
T Consensus 311 ~~i~~~~~~~~l~---~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~--~v~~~~~~~~~~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 311 SKIIKSKNLPFVA---FFVEATKCIIILEMSEKQKGDLALKQIITFP-Y--NVISLSAHNDEFQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp EEEEECSSSSEEE---EEETTCSEEEEEEECSSSTTCEEEEEEEECS-S--CEEEEEEETTEEEEEECCTTCCSSCCCSE
T ss_pred EEEEEeCCCCEEE---EEECCCCeEEEEEeccCCCCceeeccEeccC-C--ceEEEEecCCcEEEEEecccCCCCCCcce
Confidence 11 1 1112 555 8999999977 45 778889988 5 799999999776666553 3446
Q ss_pred EEEeeC
Q psy682 260 AAFTMN 265 (330)
Q Consensus 260 ~~~s~n 265 (330)
.+|..+
T Consensus 385 ~v~~~~ 390 (450)
T 2vdu_B 385 KFIEYN 390 (450)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777654
No 112
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.79 E-value=4e-19 Score=171.40 Aligned_cols=242 Identities=16% Similarity=0.147 Sum_probs=152.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCC--CCCcCcceeeeecCc-cEEEEEeCCCCCe-----------e
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSH--DQKYSPMMFSTVLDD-VCMSLKFPSNSPI-----------C 66 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSp--dg~~~~l~~~~~~~d-~~~~v~Fs~~~~v-----------~ 66 (330)
|+|+.||+|++|++.+|+.+.++.+|.+.|.+++|+| ++++ +.++..| .+....+...... +
T Consensus 177 ~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~----l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY----IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE----EEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE----EEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 5899999999999999999999999999999999994 5554 3332222 2322222211110 0
Q ss_pred ---------Eee---eccc--eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682 67 ---------HVT---ANTY--VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHP 130 (330)
Q Consensus 67 ---------~~~---~~~~--~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~ 130 (330)
.+. .+.. ..+.+++-.+++++.|++|++|+..... +....+|. ..+.++.|+||+. ++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT----DRIYSTIYDHERKRCISA 328 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEEETTTTEEEEE
T ss_pred eeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----CCEEEEEEcCCCCEEEEE
Confidence 000 0000 1233344456888889999999986554 45556786 4677899999998 6654
Q ss_pred CCCCCCCcceeccC-CCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe
Q psy682 131 TSNNNAPVPKRHLG-DNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS 202 (330)
Q Consensus 131 s~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS 202 (330)
+.++.. ..+.+. +....++..|. .+++++ +++ +++|+.|++||+ |++.+++..... .|...+ +..
T Consensus 329 ~~dg~i--~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~v~v-wd~~~~~~~~~~-~~~~~~~~~~~~~ 401 (464)
T 3v7d_B 329 SMDTTI--RIWDLENGELMYTLQGHTALVGLLRLS--DKF-LVSAAADGSIRG-WDANDYSRKFSY-HHTNLSAITTFYV 401 (464)
T ss_dssp ETTSCE--EEEETTTTEEEEEECCCSSCEEEEEEC--SSE-EEEEETTSEEEE-EETTTCCEEEEE-ECTTCCCEEEEEE
T ss_pred eCCCcE--EEEECCCCcEEEEEeCCCCcEEEEEEc--CCE-EEEEeCCCcEEE-EECCCCceeeee-cCCCCccEEEEEe
Confidence 444433 344432 22223344443 355554 677 555668999999 999876654333 233322 222
Q ss_pred --HHHHHhhhccCCCcEEEEcc-cCceeee-cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682 203 --ISLAWKNCQRDTSDVKVHTT-FGDLLRS-LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM 264 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~-~G~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~ 264 (330)
...+ +|+ ||+|+||+. +|+++++ +.+|.+ .|.+|+|+ ++.+++++ +++...+|..
T Consensus 402 ~~~~l~---~~~-dg~i~iwd~~~g~~~~~~~~~~~~--~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 402 SDNILV---SGS-ENQFNIYNLRSGKLVHANILKDAD--QIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CSSEEE---EEE-TTEEEEEETTTCCEEESCTTTTCS--EEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCEEE---Eec-CCeEEEEECCCCcEEehhhccCCC--cEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 3333 677 999999975 7999987 777777 99999998 34444444 4665555543
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=168.99 Aligned_cols=208 Identities=10% Similarity=0.035 Sum_probs=153.1
Q ss_pred CCCcEEEeecccccccceeecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682 5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT 83 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~ 83 (330)
.++++++|++..++....+.+|.+.|.+++|+| ||++ +
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~-----------------------------------------l 59 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRY-----------------------------------------M 59 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCE-----------------------------------------E
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCE-----------------------------------------E
Confidence 356789999998899999999999999999999 8877 4
Q ss_pred EEcCCcceEEEeCCCCCCcccCC--------------CCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCC-
Q psy682 84 VTANHQFAINRWNPDYAASIQSP--------------SYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDN- 146 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~~~~~--------------~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~- 146 (330)
|+++.|++|++|+.+........ +|. ..+.++.|+| ++. +++++.++ .+..|.+...
T Consensus 60 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~ 133 (408)
T 4a11_B 60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR----YSVETVQWYPHDTGMFTSSSFDK--TLKVWDTNTLQ 133 (408)
T ss_dssp EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS----SCEEEEEECTTCTTCEEEEETTS--EEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCcccceEeccccccccccccccCC----CcEEEEEEccCCCcEEEEEeCCC--eEEEeeCCCCc
Confidence 77888899999999866543332 465 4678899999 665 55433333 3344443221
Q ss_pred Ccccee--eeeeEEEEecCC---CeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e---HHHHHhhhccCC
Q psy682 147 FSQKLR--VRHNCFVTTVDS---RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S---ISLAWKNCQRDT 214 (330)
Q Consensus 147 ~~~~~~--~~~~~~~~spDg---~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S---t~~lW~~SgS~D 214 (330)
....+. ....++.++|++ ++ +++|+.|+.|++ |++.+++.+..+.+|...|. + . .+.+ +|+.|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~---~~~~d 208 (408)
T 4a11_B 134 TADVFNFEETVYSHHMSPVSTKHCL-VAVGTRGPKVQL-CDLKSGSCSHILQGHRQEILAVSWSPRYDYILA---TASAD 208 (408)
T ss_dssp EEEEEECSSCEEEEEECSSCSSCCE-EEEEESSSSEEE-EESSSSCCCEEECCCCSCEEEEEECSSCTTEEE---EEETT
T ss_pred cceeccCCCceeeeEeecCCCCCcE-EEEEcCCCeEEE-EeCCCcceeeeecCCCCcEEEEEECCCCCcEEE---EEcCC
Confidence 111111 112467777754 46 556678999999 99999999999999999882 2 2 2344 89999
Q ss_pred CcEEEEcc-cCc-eeeec---------------CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682 215 SDVKVHTT-FGD-LLRSL---------------DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 215 gtvkl~~~-~G~-ll~tL---------------~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG 266 (330)
|+|++|+. +++ .+..+ .+|.+ .|.+++|+|+|+.|++++ ++.++.|.++.
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG--KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccC--ceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 99999976 333 55555 56777 899999999999999985 88999998764
No 114
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.79 E-value=1.7e-18 Score=168.39 Aligned_cols=250 Identities=11% Similarity=-0.002 Sum_probs=166.1
Q ss_pred CCC----cEEEeec--cccccc--ceeecCCCceeEEEeCC---------------CCCc--------------------
Q psy682 5 DKG----IVEVWRT--FNLALL--YAFPSCDSSVRSLALSH---------------DQKY-------------------- 41 (330)
Q Consensus 5 ~d~----~V~lW~~--~~g~~l--~tl~gH~~~V~svafSp---------------dg~~-------------------- 41 (330)
.|| +|||||+ .+|+++ .++.+|...++.+++++ +.++
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~ 166 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY 166 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence 567 9999999 999988 56999999888777765 2121
Q ss_pred --CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC-CcceEEEeCCCCCCcccCCCCCCCCCCCCCC
Q psy682 42 --SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN-HQFAINRWNPDYAASIQSPSYAETPGSPPGN 118 (330)
Q Consensus 42 --~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~-~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~ 118 (330)
.....+.+|.+.+..++|||||+.+ +.++.+ ...+|++|+..++......+|.+ .+.+
T Consensus 167 ~g~~~~~l~~~~~~v~~~~~Spdg~~l---------------a~~s~~~~~~~i~~~d~~tg~~~~l~~~~~----~~~~ 227 (415)
T 2hqs_A 167 DGYNQFVVHRSPQPLMSPAWSPDGSKL---------------AYVTFESGRSALVIQTLANGAVRQVASFPR----HNGA 227 (415)
T ss_dssp TSCSCEEEEEESSCEEEEEECTTSSEE---------------EEEECTTSSCEEEEEETTTCCEEEEECCSS----CEEE
T ss_pred CCCCCEEEeCCCCcceeeEEcCCCCEE---------------EEEEecCCCcEEEEEECCCCcEEEeecCCC----cccC
Confidence 1122345677788889999999875 223322 23589999998877766667753 5678
Q ss_pred ccccCCCc-ee-ccCCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCC--eEEEeeeccccccccc
Q psy682 119 LPLTLDPI-LT-HPTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEG 191 (330)
Q Consensus 119 l~fs~D~~-l~-~~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~ 191 (330)
+.|+||++ ++ +.+.++...++.+.+...-...+..+ ..+++|+|||++|+.++..++ .|.+ |++.++++. .
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~-~d~~~~~~~-~ 305 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK-VNINGGAPQ-R 305 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE-EETTSSCCE-E
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE-EECCCCCEE-E
Confidence 99999999 55 32334444455555432111222222 257889999999777665566 4555 788766643 4
Q ss_pred ccCCCCcEE---Ee---HHHHHhhhcc-C--CCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC---e
Q psy682 192 KFDHPNRLF---SS---ISLAWKNCQR-D--TSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG---H 258 (330)
Q Consensus 192 l~gH~d~Vi---aS---t~~lW~~SgS-~--Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~---~ 258 (330)
+..|...+. .| ..++ .++ . +++|.+|+..+..++.|..| . .+.+++|||||+.|++++ ++ .
T Consensus 306 l~~~~~~~~~~~~spdG~~l~---~~~~~~g~~~i~~~d~~~~~~~~l~~~-~--~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 306 ITWEGSQNQDADVSSDGKFMV---MVSSNGGQQHIAKQDLATGGVQVLSST-F--LDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp CCCSSSEEEEEEECTTSSEEE---EEEECSSCEEEEEEETTTCCEEECCCS-S--SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred EecCCCcccCeEECCCCCEEE---EEECcCCceEEEEEECCCCCEEEecCC-C--CcCCeEEcCCCCEEEEEEcCCCccE
Confidence 555655551 11 1111 233 3 35888898765445677776 3 699999999999998874 33 6
Q ss_pred EEEEeeCCceeeeccCc-cccccc
Q psy682 259 IAAFTMNGNRLRHESHN-DNLQEL 281 (330)
Q Consensus 259 ~~~~s~nG~~las~~~~-~dVkEL 281 (330)
|..|..+|+.+..+..+ ..|+++
T Consensus 380 l~~~d~~g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 380 LNLVSTDGRFKARLPATDGQVKFP 403 (415)
T ss_dssp EEEEETTSCCEEECCCSSSEEEEE
T ss_pred EEEEECCCCcEEEeeCCCCCCcCC
Confidence 99999999988888754 556654
No 115
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=99.78 E-value=1.3e-20 Score=184.83 Aligned_cols=105 Identities=51% Similarity=0.946 Sum_probs=89.0
Q ss_pred CeEEEeeccCCe------EEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCC
Q psy682 165 RFLLACGFWDNS------FRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFA 237 (330)
Q Consensus 165 ~~i~asg~~D~t------irl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~ 237 (330)
++.+.++|++.. +|+ |+....-+++.+-++|.|+++.|....|+.+. .
T Consensus 223 ~f~ygshyS~~~~V~~yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~-~------------------------ 277 (414)
T 1t77_A 223 KFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ-R------------------------ 277 (414)
T ss_dssp CCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH-H------------------------
T ss_pred CcccCCCCCCHHHHHHHHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHh-c------------------------
Confidence 455666665543 466 88766677888999999999999999998421 1
Q ss_pred CCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccccCCcccCceecCCC
Q psy682 238 SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPW 317 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~w 317 (330)
...++|||||||||+||||+|.|+|+||++|+|+.|+||+||||
T Consensus 278 ------------------------------------~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~~g~~v~DV~LP~W 321 (414)
T 1t77_A 278 ------------------------------------DTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPW 321 (414)
T ss_dssp ------------------------------------CTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTT
T ss_pred ------------------------------------cCCCccccCchhhcChHhhccccCCccccccCCCCCCceeCCCC
Confidence 13579999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcC
Q psy682 318 ASSPEQFVRINRM 330 (330)
Q Consensus 318 a~s~~~fi~~~r~ 330 (330)
|++|++||++||+
T Consensus 322 a~sp~~FI~~~R~ 334 (414)
T 1t77_A 322 AKTSEEFVHINRL 334 (414)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999995
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.78 E-value=2.8e-18 Score=157.32 Aligned_cols=232 Identities=9% Similarity=-0.010 Sum_probs=162.3
Q ss_pred ceeecCCCceeEEEeCCCCCc------------------C---cceeeeecCccEEEEEeCCCCC-eeEeeeccceeccC
Q psy682 21 YAFPSCDSSVRSLALSHDQKY------------------S---PMMFSTVLDDVCMSLKFPSNSP-ICHVTANTYVTLHM 78 (330)
Q Consensus 21 ~tl~gH~~~V~svafSpdg~~------------------~---~l~~~~~~~d~~~~v~Fs~~~~-v~~~~~~~~~~~~~ 78 (330)
....+|.+.|++++|+|||++ . ++....+|...|..++|+|++. .+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------ 72 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI------------ 72 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE------------
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEE------------
Confidence 345699999999999999987 1 1222346777778888888777 64
Q ss_pred CcEEEEEcCCcceEEEeCC-CCCCcccCCC--CCCCCCCCCCCccccCCCc-eeccCCCCCCCcceecc---------CC
Q psy682 79 PSVVTVTANHQFAINRWNP-DYAASIQSPS--YAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHL---------GD 145 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~-~~~~~~~~~~--h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l---------~~ 145 (330)
++++.+++|++|+. +........+ |. ..+.++.|+| +. +++++.++...+|.... +.
T Consensus 73 -----~~~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 73 -----YVGTVQGEILKVDLIGSPSFQALTNNEAN----LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp -----EEEETTSCEEEECSSSSSSEEECBSCCCC----SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred -----EEEcCCCeEEEEEeccCCceEeccccCCC----CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 77778889999999 8888877778 87 4677899999 55 66544444333332221 11
Q ss_pred CCccce--eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccc-cc--ccccccCCCCcE----EEe---HHHHHhhhccC
Q psy682 146 NFSQKL--RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LA--LQEGKFDHPNRL----FSS---ISLAWKNCQRD 213 (330)
Q Consensus 146 ~~~~~~--~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~--l~~~l~gH~d~V----iaS---t~~lW~~SgS~ 213 (330)
+ ..++ .....+++++|++ +++|+.|++|++ |++.+ ++ .......|...| +.. ...+ +|+.
T Consensus 143 ~-~~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~---~~~~ 214 (342)
T 1yfq_A 143 N-SNNTKVKNKIFTMDTNSSR---LIVGMNNSQVQW-FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA---CSSI 214 (342)
T ss_dssp C-SSSSSSCCCEEEEEECSSE---EEEEESTTEEEE-EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE---EEET
T ss_pred e-eeEEeeCCceEEEEecCCc---EEEEeCCCeEEE-EECCccccccceeeecCCCCceeEEEECCCCCCEEE---EEec
Confidence 1 1122 2233688899988 444568999999 99986 54 233445666666 121 1222 8999
Q ss_pred CCcEEEEccc-C------ceeeecCCCCC-------CCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc--
Q psy682 214 TSDVKVHTTF-G------DLLRSLDPPSG-------FASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN-- 275 (330)
Q Consensus 214 Dgtvkl~~~~-G------~ll~tL~~h~~-------~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~-- 275 (330)
||+|+||+.+ + +.+.++++|.. ...|.+++|+|||+.|++++ ++.+++|..+ |+.+..+..+
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 294 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC
Confidence 9999999652 3 88889998853 23899999999999999985 8899999876 8888887753
Q ss_pred ccccccc
Q psy682 276 DNLQELI 282 (330)
Q Consensus 276 ~dVkELi 282 (330)
..|..+.
T Consensus 295 ~~v~~~~ 301 (342)
T 1yfq_A 295 DSVVKIA 301 (342)
T ss_dssp SEEEEEE
T ss_pred CCceEec
Confidence 4455554
No 117
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.77 E-value=1.9e-18 Score=165.04 Aligned_cols=208 Identities=12% Similarity=0.131 Sum_probs=141.7
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCC--------CCc---------CcceeeeecCccEEEEEeCCCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD--------QKY---------SPMMFSTVLDDVCMSLKFPSNS 63 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpd--------g~~---------~~l~~~~~~~d~~~~v~Fs~~~ 63 (330)
|+|+.||+|++|++.+++.+.++.+|...|.+++|+++ |.+ .......+|...+..++|+|++
T Consensus 150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 47889999999999999999999999999999999542 111 1223455788889999999998
Q ss_pred CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCC-CCCCcce
Q psy682 64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN-NNAPVPK 140 (330)
Q Consensus 64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~-~~~~~~~ 140 (330)
+.+ ++++.|++|++|+..... .....+|. ..+.++.|+||+. +++.+++ .+..+..
T Consensus 230 ~~l-----------------~s~~~d~~v~iwd~~~~~~~~~~~~~~----~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 230 LQL-----------------ASGGNDNVVQIWDARSSIPKFTKTNHN----AAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp SEE-----------------EEEETTSCEEEEETTCSSEEEEECCCS----SCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred CEE-----------------EEEeCCCeEEEccCCCCCccEEecCCc----ceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 875 778888999999997654 34455776 4677899999886 4432221 2333444
Q ss_pred eccCCC-Cccceeee--eeEEEEecCCCeEEEe-eccCCeEEEeeecccccccc--cccCCCCcEE--E-e---HHHHHh
Q psy682 141 RHLGDN-FSQKLRVR--HNCFVTTVDSRFLLAC-GFWDNSFREPFTTMYLALQE--GKFDHPNRLF--S-S---ISLAWK 208 (330)
Q Consensus 141 ~~l~~~-~~~~~~~~--~~~~~~spDg~~i~as-g~~D~tirl~w~~~~g~l~~--~l~gH~d~Vi--a-S---t~~lW~ 208 (330)
+.+... ....+... ..+++++||+++|+++ |+.|++|++ |++.++++.. .+.+|...|. + + ...+
T Consensus 289 ~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v-~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-- 365 (401)
T 4aez_A 289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS-- 365 (401)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEE-EEEETTEEEEEEEEECCSSCCCEEEECTTSSEEE--
T ss_pred EECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEE-EecCCccceeEEEecCCCCCEEEEEECCCCCEEE--
Confidence 444221 11122211 2588899999997665 678999999 9998866544 3678988872 1 2 3333
Q ss_pred hhccCCCcEEEEcc-cCceeeecCCC
Q psy682 209 NCQRDTSDVKVHTT-FGDLLRSLDPP 233 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h 233 (330)
+|+.||+|++|+. +|+.++.+..+
T Consensus 366 -s~~~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 366 -TAASDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp -EECTTSEEEEEECCC----------
T ss_pred -EEeCCCcEEEEECCCCccccccccc
Confidence 8999999999976 67777765543
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.77 E-value=1.8e-18 Score=156.22 Aligned_cols=173 Identities=13% Similarity=0.019 Sum_probs=120.5
Q ss_pred EEEcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccC--CCc-eeccCCCCCCCcceeccCCC--------
Q psy682 83 TVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTL--DPI-LTHPTSNNNAPVPKRHLGDN-------- 146 (330)
Q Consensus 83 ~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~--D~~-l~~~s~~~~~~~~~~~l~~~-------- 146 (330)
+|+++.|++|++|+.+... ...+.+|. ..+.++.|+| |+. +++++.++...+|....+..
T Consensus 26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHD----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp EEEEETTSEEEEEEECSSSCCEEEEEEEECCS----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred EEEeeCCCeEEEEECCCCCCcceecceeccCC----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 4788889999999987542 33445786 4677899999 577 66545554444443332210
Q ss_pred Cccceeee---eeEEEEecC--CCeEEEeeccCCeEEEeeeccccccccccc-------------CCCCcEE----E---
Q psy682 147 FSQKLRVR---HNCFVTTVD--SRFLLACGFWDNSFREPFTTMYLALQEGKF-------------DHPNRLF----S--- 201 (330)
Q Consensus 147 ~~~~~~~~---~~~~~~spD--g~~i~asg~~D~tirl~w~~~~g~l~~~l~-------------gH~d~Vi----a--- 201 (330)
....+..+ ..+++|+|+ +++| ++|+.|++|++ |++.+++.++.+. +|...|. .
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 179 (351)
T 3f3f_A 102 KLCTLNDSKGSLYSVKFAPAHLGLKL-ACLGNDGILRL-YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR 179 (351)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEE-EEEETTCEEEE-EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS
T ss_pred eeeeecccCCceeEEEEcCCCCCcEE-EEecCCCcEEE-ecCCChHHhccccccccccccccccCCcccceeEEEeccCC
Confidence 11122222 257889999 9884 55568999999 9998888766554 4544441 1
Q ss_pred --eHHHHHhhhccCCCcEEEEcc-cCce--eeecCCCCCCCCCcEEEeCCCc----cEEEEcc-CCeEEEEeeCC
Q psy682 202 --SISLAWKNCQRDTSDVKVHTT-FGDL--LRSLDPPSGFASPESVVMSREG----VIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 202 --St~~lW~~SgS~Dgtvkl~~~-~G~l--l~tL~~h~~~~~v~~v~fS~dG----~~l~s~~-~~~~~~~s~nG 266 (330)
....+ +|+.|+.+.+|.. .+++ +.++.+|.+ .|.+++|+|+| ++|++++ ++.+++|.++.
T Consensus 180 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 180 FSPEKLA---VSALEQAIIYQRGKDGKLHVAAKLPGHKS--LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp SSCCEEE---EEETTEEEEEEECTTSCEEEEEECCCCCS--CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CCCcEEE---EecCCCcEEEEccCCCceeeeeecCCCCc--ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 12222 7889999988754 5654 889999998 99999999999 8898885 88999998765
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.77 E-value=1.3e-17 Score=157.88 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=137.1
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEe-e-eccceeccCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHV-T-ANTYVTLHMP 79 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~-~-~~~~~~~~~~ 79 (330)
+|+.|++|+|||..+|+.+.++. |...|.+++|++++.. . ..++.+....+....+.+.. . ......+.+.
T Consensus 76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~----~--~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~ 148 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIV----V--SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNG 148 (355)
T ss_dssp ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEE----E--EETTEEEEEESSTTCCBSSCCEEEEEEEEEETT
T ss_pred EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEE----E--EEcCEEEEEECCCCceeeEEeccCCceEEEEcc
Confidence 57788999999999999999987 6679999999997533 1 22344444444433111111 0 0111123333
Q ss_pred cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc-eeccCCCCccceeeeeeEE
Q psy682 80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP-KRHLGDNFSQKLRVRHNCF 158 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 158 (330)
.++.++++.+++|++|+........ +.+ .+ .. ...-.. .+.+.++- ....++
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~---~~~------------~~--~~-----~~~~~p~~~~~~~h~-----~~v~~~ 201 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSAT---TQD------------QG--VQ-----QKAILGKGVLIKAHT-----NPIKMV 201 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC----------------------------------------CCEEECCCS-----SCEEEE
T ss_pred EEEEeCCCcCcEEEEEECCCCCccc---ccc------------cc--cc-----ccccCcccEEEEccC-----CceEEE
Confidence 3444458999999999996532100 000 00 00 000000 11111111 123688
Q ss_pred EEecCCCeEEEeeccCCe-EEEeeeccccccccccc-C-CCCcEE----Ee--HHHHHhhhccCCCcEEEEccc-Cc--e
Q psy682 159 VTTVDSRFLLACGFWDNS-FREPFTTMYLALQEGKF-D-HPNRLF----SS--ISLAWKNCQRDTSDVKVHTTF-GD--L 226 (330)
Q Consensus 159 ~~spDg~~i~asg~~D~t-irl~w~~~~g~l~~~l~-g-H~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~~-G~--l 226 (330)
+|+|||++ +++|+.|++ ||+ |++.+|+++..+. | |.+.|. .. ...+ +||.||+|+||+.. +. .
T Consensus 202 ~~s~~g~~-l~s~s~d~~~v~i-wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~---s~s~d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 202 RLNRKSDM-VATCSQDGTIIRV-FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLA---VVSDKWTLHVFEIFNDQDNK 276 (355)
T ss_dssp EECTTSSE-EEEEETTCSEEEE-EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEE---EEETTCEEEEEESSCCSCCC
T ss_pred EECCCCCE-EEEEeCCCCEEEE-EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEE---EEECCCEEEEEEccCCCCcc
Confidence 99999998 566678999 999 9999999999998 6 998882 22 3344 89999999999863 22 1
Q ss_pred eeecCC------------------CC-CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682 227 LRSLDP------------------PS-GFASPESVVMSREGVIVVNY-ERGHIAAFTMN 265 (330)
Q Consensus 227 l~tL~~------------------h~-~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n 265 (330)
...|.+ +. .......++|+|||+.|+.+ .++.+..|.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 222222 00 00134779999999988887 58888888654
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.77 E-value=2.8e-19 Score=171.78 Aligned_cols=178 Identities=5% Similarity=-0.099 Sum_probs=100.6
Q ss_pred ccCCcEEEEEcCCcceEEEeCCCCCC------cccCCCCCCCCCCCCCCccccC--------CCc-eeccCCCCCCCcce
Q psy682 76 LHMPSVVTVTANHQFAINRWNPDYAA------SIQSPSYAETPGSPPGNLPLTL--------DPI-LTHPTSNNNAPVPK 140 (330)
Q Consensus 76 ~~~~~~v~vS~~~~~tv~lW~~~~~~------~~~~~~h~~~~~~~~~~l~fs~--------D~~-l~~~s~~~~~~~~~ 140 (330)
.++++.++|+++.|++|++|+.+... +.++.||++ .++++.|+| |++ +++++.|.+..+|.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~----~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN----FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS----CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC----ceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 34455567999999999999987654 234679984 677899987 888 66645544444443
Q ss_pred eccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC---------------------
Q psy682 141 RHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP--------------------- 196 (330)
Q Consensus 141 ~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~--------------------- 196 (330)
..-+.+.. .+..+ ..+++|+|+++.++++|+.|++||+ |++.+++.......+.
T Consensus 173 ~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~-wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 173 LTDEGPIL-AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI-FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EETTEEEE-EEEECSSCEEEEEEETTEEEEEEEEETTSEEEE-EETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred CCCCceee-eecCCCCCcEEEEECCCCCceEEecCCCCEEEE-EECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 22222221 12222 2588999998766888889999999 9998876554443332
Q ss_pred ----CcE--E--Ee---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCC-----------------
Q psy682 197 ----NRL--F--SS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSRE----------------- 247 (330)
Q Consensus 197 ----d~V--i--aS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d----------------- 247 (330)
+.| + .+ ..++ +++.|+++++|+. .|+..+.|.+|.. .+..+.++|+
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~---s~s~d~~i~vwd~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGIL---AMCKSGAWLRWNLFANNDYNEISDSTM--KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEE---EECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEE---EEeCCCCEEEEECccCCCCceEeeecC--ccccEEEccccccccccCcceeEEEcc
Confidence 222 0 00 1111 8999999999976 6888888888877 6666666654
Q ss_pred ---ccEEEEcc-CCeEEEEee
Q psy682 248 ---GVIVVNYE-RGHIAAFTM 264 (330)
Q Consensus 248 ---G~~l~s~~-~~~~~~~s~ 264 (330)
+.++++|+ ++++++|..
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCEEEEEEC
Confidence 44677775 666655543
No 121
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.76 E-value=4.2e-18 Score=162.12 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=138.5
Q ss_pred CcccCCCcEEEeecccc-------cccceeecCCCceeEEEeCCCCC-c------------------Ccceee--eecCc
Q psy682 1 MSGGDKGIVEVWRTFNL-------ALLYAFPSCDSSVRSLALSHDQK-Y------------------SPMMFS--TVLDD 52 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g-------~~l~tl~gH~~~V~svafSpdg~-~------------------~~l~~~--~~~~d 52 (330)
|+|+.||+|++|++.++ +.+.++.+|...|++++|+|+|+ + ..+... .+|.+
T Consensus 98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 177 (402)
T 2aq5_A 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD 177 (402)
T ss_dssp EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS
T ss_pred EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC
Confidence 57899999999999987 67889999999999999999985 3 112223 45888
Q ss_pred cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccC-CCCCCCCCCCCCCccccCCCceecc
Q psy682 53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQS-PSYAETPGSPPGNLPLTLDPILTHP 130 (330)
Q Consensus 53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~-~~h~~~~~~~~~~l~fs~D~~l~~~ 130 (330)
.+..++|+|++..+ ++++.|++|++|++.... +... .+|.+ ..+..+.|++|+.+++.
T Consensus 178 ~v~~~~~~~~~~~l-----------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 178 TIYSVDWSRDGALI-----------------CTSCRDKRVRVIEPRKGTVVAEKDRPHEG---TRPVHAVFVSEGKILTT 237 (402)
T ss_dssp CEEEEEECTTSSCE-----------------EEEETTSEEEEEETTTTEEEEEEECSSCS---SSCCEEEECSTTEEEEE
T ss_pred ceEEEEECCCCCEE-----------------EEEecCCcEEEEeCCCCceeeeeccCCCC---CcceEEEEcCCCcEEEE
Confidence 88999999998875 777889999999987655 3444 57763 24678999999995542
Q ss_pred CC--CCCCCcceeccCCCC--cccee----eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc-cccccCC--CCcE
Q psy682 131 TS--NNNAPVPKRHLGDNF--SQKLR----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL-QEGKFDH--PNRL 199 (330)
Q Consensus 131 s~--~~~~~~~~~~l~~~~--~~~~~----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l-~~~l~gH--~d~V 199 (330)
.. +.+..+..+.+...- ..... ....+++++||+++|+++|+.|++|++ |++.+++. +..+.+| .+.|
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i-~d~~~~~~~~~~l~~~~~~~~v 316 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY-FEITSEAPFLHYLSMFSSKESQ 316 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE-EEECSSTTCEEEEEEECCSSCC
T ss_pred eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE-EEecCCCcceEeecccccCCcc
Confidence 21 223334444443211 11111 112578899999998888888999999 99988873 4445444 3555
Q ss_pred ----EEeHHHHHhhhccCCCcEEEEccc
Q psy682 200 ----FSSISLAWKNCQRDTSDVKVHTTF 223 (330)
Q Consensus 200 ----iaSt~~lW~~SgS~Dgtvkl~~~~ 223 (330)
+.+.-.+ .++.|+++++|...
T Consensus 317 ~~~~~sp~~~~---~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 317 RGMGYMPKRGL---EVNKCEIARFYKLH 341 (402)
T ss_dssp SEEEECCGGGS---CGGGTEEEEEEEEE
T ss_pred cceEEeccccc---ceecceeEEEEEcC
Confidence 2232111 34567899999764
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.74 E-value=2.4e-17 Score=166.88 Aligned_cols=243 Identities=10% Similarity=0.042 Sum_probs=162.5
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------Ccceeee------------ecCccEEEEEeCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFST------------VLDDVCMSLKFPS 61 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~~------------~~~d~~~~v~Fs~ 61 (330)
|+++.|++|++||..+|+.+.+++.+.. +++++|||||++ ..+.... ........+.|+|
T Consensus 153 vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp 231 (543)
T 1nir_A 153 VTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 231 (543)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCC
Confidence 4677899999999999999999984444 999999999987 0000000 1122345566666
Q ss_pred ----CCCeeEeeeccceeccCCcEEEEEcC-CcceEEEeCCCCCCcccC-CCCCCC-------CCCCCCCccccCCCcee
Q psy682 62 ----NSPICHVTANTYVTLHMPSVVTVTAN-HQFAINRWNPDYAASIQS-PSYAET-------PGSPPGNLPLTLDPILT 128 (330)
Q Consensus 62 ----~~~v~~~~~~~~~~~~~~~~v~vS~~-~~~tv~lW~~~~~~~~~~-~~h~~~-------~~~~~~~l~fs~D~~l~ 128 (330)
||+.+ ++++ .+.+|.+|+....+.... ..+... ....+..+.+++|+...
T Consensus 232 ~~~~dg~~l-----------------~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 232 FKGYEDRYT-----------------IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp STTCTTTEE-----------------EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred CcCCCCCEE-----------------EEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 66654 3333 478899998765543222 221100 01245678899987632
Q ss_pred ccCCCCCCCcceeccCCC--Cc-cceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcE
Q psy682 129 HPTSNNNAPVPKRHLGDN--FS-QKLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRL 199 (330)
Q Consensus 129 ~~s~~~~~~~~~~~l~~~--~~-~~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~V 199 (330)
..+...+..++.+..... +. .++.. ....++|+|||+++++++..|++|++ |++++|+++.++.. |..+.
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v-~D~~tg~l~~~i~~g~~ph~g~g 373 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAV-IDSKDRRLSALVDVGKTPHPGRG 373 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEE-EETTTTEEEEEEECSSSBCCTTC
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEE-EECCCCeEEEeeccCCCCCCCCC
Confidence 222333344444443221 10 01111 12468899999999999888999999 99999999887764 76543
Q ss_pred --EEe--HHHHHhhhcc-CCCcEEEEcc-c-------CceeeecCCCCCCCCCcEEEeCCCccEEEEcc--------CCe
Q psy682 200 --FSS--ISLAWKNCQR-DTSDVKVHTT-F-------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--------RGH 258 (330)
Q Consensus 200 --iaS--t~~lW~~SgS-~Dgtvkl~~~-~-------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--------~~~ 258 (330)
+++ --.+|- +++ .|++|+||+. + ++.+++|.+|.+ .+..|+|+|||+.|.++. +++
T Consensus 374 ~~~~~p~~g~~~~-s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 374 ANFVHPKYGPVWS-TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp EEEEETTTEEEEE-EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred cccCCCCCccEEE-eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 332 122343 554 6899999965 4 899999999987 889999999999999985 568
Q ss_pred EEEEeeC
Q psy682 259 IAAFTMN 265 (330)
Q Consensus 259 ~~~~s~n 265 (330)
+.+|.++
T Consensus 451 v~v~d~~ 457 (543)
T 1nir_A 451 VAVFDLK 457 (543)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999876
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.74 E-value=2.5e-17 Score=160.15 Aligned_cols=215 Identities=10% Similarity=-0.003 Sum_probs=148.3
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C---ccee----------eeecCccEEEEEeCCCCCee
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S---PMMF----------STVLDDVCMSLKFPSNSPIC 66 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~---~l~~----------~~~~~d~~~~v~Fs~~~~v~ 66 (330)
++|++|++. |+....+.+|...|.+++|||||+. . .+.. ...+...+..++|+|||+.|
T Consensus 159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence 799999995 6778899999999999999999986 0 1111 23455667888888888865
Q ss_pred EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccC
Q psy682 67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLG 144 (330)
Q Consensus 67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~ 144 (330)
++ +.+.+.+..|++|+..+.....+.+|. ..+.++.|+||++ ++..+. ++...++.+.+.
T Consensus 238 a~--------------~~~~~g~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 238 AF--------------ALSKTGSLNLYVMDLASGQIRQVTDGR----SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp EE--------------EECTTSSCEEEEEETTTCCEEECCCCS----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred EE--------------EEecCCCceEEEEECCCCCEEeCcCCC----CcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 22 233445566999999887777777775 3567899999999 554332 222234444443
Q ss_pred CCCccceee---eeeEEEEecCCCeEEEeeccC--CeEEEeeecccccccccccCCCCcE---EEe--HHHHHhhhccCC
Q psy682 145 DNFSQKLRV---RHNCFVTTVDSRFLLACGFWD--NSFREPFTTMYLALQEGKFDHPNRL---FSS--ISLAWKNCQRDT 214 (330)
Q Consensus 145 ~~~~~~~~~---~~~~~~~spDg~~i~asg~~D--~tirl~w~~~~g~l~~~l~gH~d~V---iaS--t~~lW~~SgS~D 214 (330)
..-.+.+.. ...+++|+|||++|+.++..+ ..|++ |+++++++. .+..|.... ++. ...+ .++.|
T Consensus 300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~-~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~---~~s~~ 374 (415)
T 2hqs_A 300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK-QDLATGGVQ-VLSSTFLDETPSLAPNGTMVI---YSSSQ 374 (415)
T ss_dssp SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE-EETTTCCEE-ECCCSSSCEEEEECTTSSEEE---EEEEE
T ss_pred CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEE-EECCCCCEE-EecCCCCcCCeEEcCCCCEEE---EEEcC
Confidence 221111211 234688999999977766542 57898 999888774 455664222 222 2222 45555
Q ss_pred C---cEEEEcccCceeeecCCCCCCCCCcEEEeCCC
Q psy682 215 S---DVKVHTTFGDLLRSLDPPSGFASPESVVMSRE 247 (330)
Q Consensus 215 g---tvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~d 247 (330)
+ .|.+|+.+|+.++.|.+|.+ .|.+++|||.
T Consensus 375 ~~~~~l~~~d~~g~~~~~l~~~~~--~v~~~~~~~~ 408 (415)
T 2hqs_A 375 GMGSVLNLVSTDGRFKARLPATDG--QVKFPAWSPY 408 (415)
T ss_dssp TTEEEEEEEETTSCCEEECCCSSS--EEEEEEECCC
T ss_pred CCccEEEEEECCCCcEEEeeCCCC--CCcCCccccc
Confidence 5 68889999999999999988 9999999996
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.8e-18 Score=156.81 Aligned_cols=211 Identities=9% Similarity=-0.006 Sum_probs=127.2
Q ss_pred CcccCCCcEEEeeccc---------ccccceee-cCCCceeEEEeCC--CCCcCcceeeeecCccEEEEEeCCCCCeeEe
Q psy682 1 MSGGDKGIVEVWRTFN---------LALLYAFP-SCDSSVRSLALSH--DQKYSPMMFSTVLDDVCMSLKFPSNSPICHV 68 (330)
Q Consensus 1 asgs~d~~V~lW~~~~---------g~~l~tl~-gH~~~V~svafSp--dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~ 68 (330)
+||+.|++|++|+... ++.+..+. +|.+.|.+++|+| +|++
T Consensus 89 ~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------------------- 141 (343)
T 3lrv_A 89 ISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY--------------------------- 141 (343)
T ss_dssp EEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCE---------------------------
T ss_pred EEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCE---------------------------
Confidence 5789999999997753 22233322 4445555555555 4444
Q ss_pred eeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC
Q psy682 69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN 146 (330)
Q Consensus 69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~ 146 (330)
.++++.|++|++|+......... .++. ...+.++.|+||+. +++++.++...+|..+-+..
T Consensus 142 --------------l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 142 --------------FIWADNRGTIGFQSYEDDSQYIVHSAKS---DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp --------------EEEEETTCCEEEEESSSSCEEEEECCCS---SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred --------------EEEEeCCCcEEEEECCCCcEEEEEecCC---CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence 48888999999999976654332 2332 23578899999999 55444555444443332332
Q ss_pred Cccceee-e---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC---CCc-----E-EEe--HHHHHhhhc
Q psy682 147 FSQKLRV-R---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH---PNR-----L-FSS--ISLAWKNCQ 211 (330)
Q Consensus 147 ~~~~~~~-~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH---~d~-----V-iaS--t~~lW~~Sg 211 (330)
...++.. | ..+++|+|||++|++++ |++||+ |++.+++....+..+ .-. + +.. ...+ +|
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~---~~ 278 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVC-FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI---AY 278 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEE-EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE---EE
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEE-EEcCCCCcceeecccccccccccceEEEECCCCCEEE---Ee
Confidence 2133444 3 36889999999955544 569999 999988876665542 222 1 111 2222 66
Q ss_pred cC-CCcEEEEccc-CceeeecCCCCCCCCCcEEEeCC---CccEEEEc-cCCeEEEEeeCCc
Q psy682 212 RD-TSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSR---EGVIVVNY-ERGHIAAFTMNGN 267 (330)
Q Consensus 212 S~-Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~---dG~~l~s~-~~~~~~~~s~nG~ 267 (330)
+. |++|+||+.+ +.....+ . .+..++|+| +++.++++ .++.+.++...|.
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK----D--EESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE----E--EEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred cCCCCcEEEEEEcccccceEe----c--CceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 67 9999999762 2221222 2 567788888 88777776 3666666554443
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.73 E-value=1.5e-17 Score=161.01 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=135.2
Q ss_pred ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-----------CCcccCCCCCCCCCCCCC
Q psy682 49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-----------AASIQSPSYAETPGSPPG 117 (330)
Q Consensus 49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-----------~~~~~~~~h~~~~~~~~~ 117 (330)
.|.+.|..++|+|+++- ++|+++.+++|++|+... ..+.++.+|.. .+.
T Consensus 126 ~h~~~v~~l~~~p~~~~----------------~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~ 185 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNAC----------------VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK----EGY 185 (430)
T ss_dssp EESSCCSEEEEETTEEE----------------EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS----CCC
T ss_pred cCCCcEEEEEECCCCCc----------------EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC----CeE
Confidence 45555566666665321 257888899999999864 33455568874 678
Q ss_pred CccccCCCc--eeccCCCCCCCcceeccCCC--C------ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682 118 NLPLTLDPI--LTHPTSNNNAPVPKRHLGDN--F------SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTM 184 (330)
Q Consensus 118 ~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~--~------~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~ 184 (330)
++.|+|++. +++++.++ .+..|.+... . ...+..| ..+++++|++..++++++.|++|++ |++.
T Consensus 186 ~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i-~d~~ 262 (430)
T 2xyi_A 186 GLSWNPNLNGYLLSASDDH--TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI-WDTR 262 (430)
T ss_dssp CEEECTTSTTEEEEECTTS--CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE-EETT
T ss_pred EEEeCCCCCCeEEEEeCCC--eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE-EECC
Confidence 899999987 55433333 3444444321 0 1122233 3588999965555777788999999 9998
Q ss_pred cc---cccccccCCCCcE--EE--e---HHHHHhhhccCCCcEEEEccc--CceeeecCCCCCCCCCcEEEeCCCcc-EE
Q psy682 185 YL---ALQEGKFDHPNRL--FS--S---ISLAWKNCQRDTSDVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGV-IV 251 (330)
Q Consensus 185 ~g---~l~~~l~gH~d~V--ia--S---t~~lW~~SgS~Dgtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~-~l 251 (330)
++ +.+..+.+|...| ++ . .+.+ +|+.||+|+||+.. ++.+.++.+|.+ .|.+|+|+|+|. +|
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~---tg~~dg~v~vwd~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA---TGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETIL 337 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEE---EEETTSEEEEEETTCTTSCSEEEECCSS--CEEEEEECSSCTTEE
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEE---EEeCCCeEEEEeCCCCCCCeEEeecCCC--CEEEEEECCCCCCEE
Confidence 77 5777788998887 22 1 2344 89999999999863 678999999988 999999999995 67
Q ss_pred EEc-cCCeEEEEeeCC
Q psy682 252 VNY-ERGHIAAFTMNG 266 (330)
Q Consensus 252 ~s~-~~~~~~~~s~nG 266 (330)
|++ .++.+.+|.++.
T Consensus 338 ~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEETTSCCEEEEGGG
T ss_pred EEEeCCCcEEEEeCCC
Confidence 777 588999998875
No 126
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=5.5e-17 Score=143.67 Aligned_cols=214 Identities=11% Similarity=0.075 Sum_probs=145.2
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV 81 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~ 81 (330)
+++.|++|++|++.+++.. .+..|...|.+++|||||+. +
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~---------------------------------------l 56 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKY---------------------------------------L 56 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSE---------------------------------------E
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCE---------------------------------------E
Confidence 3578999999999887654 66779999999999999887 1
Q ss_pred EEEEcCCcceEEEeCCCC-CCcccCC-CCCCCCCCCCCCccccCCCc-eeccCCC--CCCCcceeccCCCCccceee--e
Q psy682 82 VTVTANHQFAINRWNPDY-AASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSN--NNAPVPKRHLGDNFSQKLRV--R 154 (330)
Q Consensus 82 v~vS~~~~~tv~lW~~~~-~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~--~~~~~~~~~l~~~~~~~~~~--~ 154 (330)
++++ +..|++|+.++ ....... +|. ...+.++.|+||++ ++..+.. ....++...+.......+.. .
T Consensus 57 --~~~~-~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (297)
T 2ojh_A 57 --LLNS-EGLLYRLSLAGDPSPEKVDTGFA---TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP 130 (297)
T ss_dssp --EEEE-TTEEEEEESSSCCSCEECCCTTC---CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS
T ss_pred --EEEc-CCeEEEEeCCCCCCceEeccccc---cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC
Confidence 2222 55799999987 6555443 442 13567899999999 4443311 23344444432211111211 1
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcE----EEe---HHHHHhhhccCCCcEEEEcc--cC
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRL----FSS---ISLAWKNCQRDTSDVKVHTT--FG 224 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~--~G 224 (330)
..+++++|||++|+.++..|+++++ |.++. +.....+..|...+ +.. .+.. +++.|+.++||.. ++
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~---~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDI-YSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYF---NSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEE-EEEETTTCCEEECCCSSSCEEEEEECTTSSEEEE---EECTTSSCEEEEEETTS
T ss_pred ccceEECCCCCEEEEEECCCCceEE-EEEECCCCcceEcccCCCccccceECCCCCEEEE---EecCCCCccEEEECCCC
Confidence 3567899999998867778999999 98532 23334566666655 111 1221 4557999999965 67
Q ss_pred ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-C-----------CeEEEEeeCCc
Q psy682 225 DLLRSLDPPSGFASPESVVMSREGVIVVNYE-R-----------GHIAAFTMNGN 267 (330)
Q Consensus 225 ~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~-----------~~~~~~s~nG~ 267 (330)
..++.+..|.. .+..++|||||+.|+.++ + ..+..|..++.
T Consensus 207 ~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 207 SSVERITDSAY--GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp SCEEECCCCSE--EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCcEEEecCCc--ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 88899998877 899999999999988874 2 45888887764
No 127
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.73 E-value=5.5e-17 Score=156.54 Aligned_cols=208 Identities=11% Similarity=0.146 Sum_probs=143.6
Q ss_pred ecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEE
Q psy682 24 PSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVT 85 (330)
Q Consensus 24 ~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS 85 (330)
.+|...|.+++| ||+. .......+|...|..+.| ++.. +++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~-----------------l~s 188 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV-----------------IIT 188 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSE-----------------EEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCE-----------------EEE
Confidence 567778998888 5554 112223455556665555 4443 588
Q ss_pred cCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCc--cceeeeee-EEEEe
Q psy682 86 ANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS--QKLRVRHN-CFVTT 161 (330)
Q Consensus 86 ~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~s 161 (330)
++.|++|++|+...+. +.+..+|.+ .+.++.|+++ .+++++.++...++....+.... ..+..+.. ..++.
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~~h~~----~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLIHHCE----AVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCCS----CEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEcCCCC----cEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence 8899999999987555 455568864 5667888743 56654554444333322222111 12223321 22234
Q ss_pred cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC
Q psy682 162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF 236 (330)
Q Consensus 162 pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~ 236 (330)
.|+++ +++|+.|++|++ |++.+++++..+.+|.+.|.. . ...+ +|+.||+|++|+. +|+.++++.+|.+
T Consensus 264 ~~~~~-l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~---~g~~dg~i~iwd~~~~~~~~~~~~h~~- 337 (435)
T 1p22_A 264 FDDKY-IVSASGDRTIKV-WNTSTCEFVRTLNGHKRGIACLQYRDRLVV---SGSSDNTIRLWDIECGACLRVLEGHEE- 337 (435)
T ss_dssp EETTE-EEEEETTSEEEE-EETTTCCEEEEEECCSSCEEEEEEETTEEE---EEETTSCEEEEETTTCCEEEEECCCSS-
T ss_pred eCCCE-EEEEeCCCeEEE-EECCcCcEEEEEcCCCCcEEEEEeCCCEEE---EEeCCCeEEEEECCCCCEEEEEeCCcC-
Confidence 48888 455668999999 999999999999999998822 1 3333 8999999999986 6999999999998
Q ss_pred CCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682 237 ASPESVVMSREGVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 237 ~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG 266 (330)
.|.+++| ||+.|++++ ++.++.|....
T Consensus 338 -~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 338 -LVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -CEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred -cEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 9999999 888999985 88999998754
No 128
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.72 E-value=3.3e-17 Score=158.00 Aligned_cols=227 Identities=15% Similarity=0.165 Sum_probs=153.3
Q ss_pred eecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682 12 WRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTY 73 (330)
Q Consensus 12 W~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~ 73 (330)
|+....+....|.||.+.|.. +++++|+. ..+....+|...|..+.|+ +.
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~--------- 170 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN--------- 170 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT---------
T ss_pred ccCCCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC---------
Confidence 433333456779999998633 35556665 1122233555556666554 22
Q ss_pred eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee
Q psy682 74 VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR 152 (330)
Q Consensus 74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~ 152 (330)
.+++++.|++|++|+.+.+. +.+..+|.+ .+.++.+.++ .+++++.++...++....+. ....+.
T Consensus 171 --------~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~-~~~~~~ 236 (445)
T 2ovr_B 171 --------IIISGSTDRTLKVWNAETGECIHTLYGHTS----TVRCMHLHEK-RVVSGSRDATLRVWDIETGQ-CLHVLM 236 (445)
T ss_dssp --------EEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEEETT-EEEEEETTSEEEEEESSSCC-EEEEEE
T ss_pred --------EEEEEeCCCeEEEEECCcCcEEEEECCCCC----cEEEEEecCC-EEEEEeCCCEEEEEECCCCc-EEEEEc
Confidence 34888889999999987554 455568874 5667777532 36654444433333322121 112333
Q ss_pred eee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe-----HHHHHhh------
Q psy682 153 VRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS-----ISLAWKN------ 209 (330)
Q Consensus 153 ~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS-----t~~lW~~------ 209 (330)
.+. .++++ |+++ +++|+.|++|++ |++.+++.+..+.+|.+.| +++ ++++|+.
T Consensus 237 ~~~~~v~~~~~--~~~~-l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 237 GHVAAVRCVQY--DGRR-VVSGAYDFMVKV-WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp CCSSCEEEEEE--CSSC-EEEEETTSCEEE-EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCcccEEEEEE--CCCE-EEEEcCCCEEEE-EECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE
Confidence 332 35444 8888 555668999999 9999999999999999887 222 7888876
Q ss_pred ---------------------hccCCCcEEEEcc-cCceeeecCC---CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682 210 ---------------------CQRDTSDVKVHTT-FGDLLRSLDP---PSGFASPESVVMSREGVIVVNYE-RGHIAAFT 263 (330)
Q Consensus 210 ---------------------SgS~Dgtvkl~~~-~G~ll~tL~~---h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s 263 (330)
+|+.||+|++|+. +|+.++++.+ |.. .|.+++|+ +..|++++ ++.++.|.
T Consensus 313 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS--CEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC--CEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 8999999999986 7999999997 655 89999996 57788875 88999998
Q ss_pred e-CCceeeec
Q psy682 264 M-NGNRLRHE 272 (330)
Q Consensus 264 ~-nG~~las~ 272 (330)
. +|+.++.+
T Consensus 389 ~~~~~~~~~~ 398 (445)
T 2ovr_B 389 LKTGEFIRNL 398 (445)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCceeeee
Confidence 5 47777666
No 129
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=173.77 Aligned_cols=195 Identities=11% Similarity=-0.043 Sum_probs=137.9
Q ss_pred cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC
Q psy682 20 LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY 99 (330)
Q Consensus 20 l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~ 99 (330)
..++.||.+.|++++|||||++ +++++.|++|++|+..+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~-----------------------------------------latg~~dg~I~vwd~~~ 40 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKR-----------------------------------------LATCSSDKTIKIFEVEG 40 (753)
T ss_dssp ------CCCCEEEECCCSSSCC-----------------------------------------EEEEETTTEEEEEEEET
T ss_pred eeecccCcceeEEEEECCCCCe-----------------------------------------EEEEECCCcEEEEecCC
Confidence 3567889999999988888877 47788899999999863
Q ss_pred C---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC-Cccceeee---eeEEEEecC--CCeE
Q psy682 100 A---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN-FSQKLRVR---HNCFVTTVD--SRFL 167 (330)
Q Consensus 100 ~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~-~~~~~~~~---~~~~~~spD--g~~i 167 (330)
. ...+..+|. .++.++.|++| +. +++++.++...+|....+.. ....+..+ ..+++|+|+ +++
T Consensus 41 ~~~~~~~~l~~h~----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~- 115 (753)
T 3jro_A 41 ETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL- 115 (753)
T ss_dssp TEEEEEEEECCCS----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-
T ss_pred CCCccceeccCCc----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCE-
Confidence 2 245566887 46778999988 76 66655555544443332210 11122222 258899999 888
Q ss_pred EEeeccCCeEEEeeeccccc--ccccccCCCCcEE----Ee---------------HHHHHhhhccCCCcEEEEccc-C-
Q psy682 168 LACGFWDNSFREPFTTMYLA--LQEGKFDHPNRLF----SS---------------ISLAWKNCQRDTSDVKVHTTF-G- 224 (330)
Q Consensus 168 ~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~Vi----aS---------------t~~lW~~SgS~Dgtvkl~~~~-G- 224 (330)
+++|+.|++|++ |++.+++ ....+.+|...|. .. ...+ +|+.||+|++|+.. +
T Consensus 116 l~sgs~dg~I~v-wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~---sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 116 LLVASSDGKVSV-VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV---TGGADNLVKIWKYNSDA 191 (753)
T ss_dssp EEEEETTSEEEE-EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE---EEETTSCEEEEEEETTT
T ss_pred EEEEeCCCcEEE-EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE---EEECCCeEEEEeccCCc
Confidence 555668999999 9998763 3456678888872 11 1222 89999999999763 4
Q ss_pred ---ceeeecCCCCCCCCCcEEEeCCC---ccEEEEcc-CCeEEEEeeCC
Q psy682 225 ---DLLRSLDPPSGFASPESVVMSRE---GVIVVNYE-RGHIAAFTMNG 266 (330)
Q Consensus 225 ---~ll~tL~~h~~~~~v~~v~fS~d---G~~l~s~~-~~~~~~~s~nG 266 (330)
.++.++.+|.+ .|.+++|+|+ |..+++++ ++.++.|.++.
T Consensus 192 ~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 192 QTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp TEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 67889999999 9999999999 99999995 77788887665
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.71 E-value=9.6e-17 Score=150.71 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=148.8
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Cccee----------eeecCccEEEEEeCCCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPMMF----------STVLDDVCMSLKFPSNS 63 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l~~----------~~~~~d~~~~v~Fs~~~ 63 (330)
+++.|++|++|++.+|+.+.++..|. .|.+++|+|||+. ..+.. ...+...+..+.|+|++
T Consensus 49 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 127 (391)
T 1l0q_A 49 ANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG 127 (391)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred ECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC
Confidence 56789999999999999999998877 9999999999986 00100 11223345667777777
Q ss_pred CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceec
Q psy682 64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH 142 (330)
Q Consensus 64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~ 142 (330)
+.+ .++++.+++|++|+.......... .|. .+..+.|+||+.....++..+..+..+.
T Consensus 128 ~~l----------------~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 128 KKL----------------YVTNNGDKTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp SEE----------------EEEETTTTEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CEE----------------EEEeCCCCEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 753 467778899999998765543333 342 4578999999983321233333344454
Q ss_pred cCCC-Ccccee--eeeeEEEEecCCCeEEEeec--cCCeEEEeeecccccccccccCCCCcE-E-Ee----HHHHHhhhc
Q psy682 143 LGDN-FSQKLR--VRHNCFVTTVDSRFLLACGF--WDNSFREPFTTMYLALQEGKFDHPNRL-F-SS----ISLAWKNCQ 211 (330)
Q Consensus 143 l~~~-~~~~~~--~~~~~~~~spDg~~i~asg~--~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS----t~~lW~~Sg 211 (330)
+... ....+. ....+++|+|||++|++++. .|+.|++ |++.+++.+..+..|.... + .+ .+.+ ++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~-~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~---s~ 262 (391)
T 1l0q_A 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM-IDTGTNKITARIPVGPDPAGIAVTPDGKKVYV---AL 262 (391)
T ss_dssp TTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE-EETTTTEEEEEEECCSSEEEEEECTTSSEEEE---EE
T ss_pred CCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEE-EECCCCeEEEEEecCCCccEEEEccCCCEEEE---Ec
Confidence 4221 111111 12357889999999888775 6899999 9999999888888887643 2 12 2223 78
Q ss_pred cCCCcEEEEcc-cCceeeecCCCCCC-CCCcEEEeCCCc
Q psy682 212 RDTSDVKVHTT-FGDLLRSLDPPSGF-ASPESVVMSREG 248 (330)
Q Consensus 212 S~Dgtvkl~~~-~G~ll~tL~~h~~~-~~v~~v~fS~dG 248 (330)
+.|++|++|+. +|++++++..|... .....+.+.|+|
T Consensus 263 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 263 SFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred CCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence 99999999976 79999999877551 012235555544
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.71 E-value=1e-16 Score=147.22 Aligned_cols=262 Identities=12% Similarity=0.082 Sum_probs=155.2
Q ss_pred CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCC-eeEeee---ccc-e
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSP-ICHVTA---NTY-V 74 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~-v~~~~~---~~~-~ 74 (330)
++++.+++|++|++.+|+.+.++..+...+ +++|||||+. + +.. ..++.++.+....... ...+.. ... +
T Consensus 14 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~--l-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 14 VVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSN--V-VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCE--E-EEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCE--E-EEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 356788999999999999999988888888 9999999985 1 111 1122222222111111 111110 111 2
Q ss_pred eccCCcEEEEEcCCc-c--eEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCC-cceeccCC--CC
Q psy682 75 TLHMPSVVTVTANHQ-F--AINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP-VPKRHLGD--NF 147 (330)
Q Consensus 75 ~~~~~~~v~vS~~~~-~--tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~-~~~~~l~~--~~ 147 (330)
.+++++..+++++.+ . +|.+|+.+.........+. ..+..+.|+||++ +.++.. .... +..+.+.. .+
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~-~~~~~i~~~~~~~~g~~ 164 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----YDAVGIAISPNGNGLILIDR-SSANTVRRFKIDADGVL 164 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----TTEEEEEECTTSSCEEEEEE-TTTTEEEEEEECTTCCE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----CCccceEECCCCCEEEEEec-CCCceEEEEEECCCCcE
Confidence 333333333343444 3 8999999766544433221 2346899999998 443222 2233 34333321 01
Q ss_pred c----ccee--eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc---cccccCCCCc--E-EEeHHH-HHhhhccCC
Q psy682 148 S----QKLR--VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL---QEGKFDHPNR--L-FSSISL-AWKNCQRDT 214 (330)
Q Consensus 148 ~----~~~~--~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l---~~~l~gH~d~--V-iaSt~~-lW~~SgS~D 214 (330)
. +.+. ....+++|+|||+++++++..+++|++ |+++++++ +..+..+... + +...-+ +|- +...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v-~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~ 242 (331)
T 3u4y_A 165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI-LETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYV-LTEST 242 (331)
T ss_dssp EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE-EECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEE-ECSSE
T ss_pred eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE-EECCCCcccceeeeccCCCCCceEEECCCCCEEEE-EEcCC
Confidence 0 0000 113578899999988888888999999 99998988 6666654332 2 222101 111 45567
Q ss_pred CcEEEEcc-cCce--eeecCCC----CCC-CCCcEEEeCCCccEEEEc--cCCeEEEEeeCCceeeecc
Q psy682 215 SDVKVHTT-FGDL--LRSLDPP----SGF-ASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHES 273 (330)
Q Consensus 215 gtvkl~~~-~G~l--l~tL~~h----~~~-~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~las~~ 273 (330)
++|.+|+. +|++ +.++..+ ... ..+..++|||||+.|+.+ +.+.+..|.++++.+....
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 311 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA 311 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence 88999976 5776 4444332 110 123569999999977544 4678999999998776553
No 132
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.71 E-value=3.2e-17 Score=156.05 Aligned_cols=243 Identities=9% Similarity=-0.001 Sum_probs=157.7
Q ss_pred cccCCCcEEEeeccc--c--cccceeecCCCceeEEEeCCCCCcCcceeee---------------------------ec
Q psy682 2 SGGDKGIVEVWRTFN--L--ALLYAFPSCDSSVRSLALSHDQKYSPMMFST---------------------------VL 50 (330)
Q Consensus 2 sgs~d~~V~lW~~~~--g--~~l~tl~gH~~~V~svafSpdg~~~~l~~~~---------------------------~~ 50 (330)
+++.|+.++||.++. + +.+..++.+. .+.+++|+|++++ +.. +|
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~----~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 168 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRL----AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKK 168 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEE----EEEBTTSSSEEEEETTTCCEEEECCCHHHHTT
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeE----EEEeCCCCeEEEEECCCCeEeeecCccccccc
Confidence 355667667776543 4 5666777665 4559999997766 222 33
Q ss_pred CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceec
Q psy682 51 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTH 129 (330)
Q Consensus 51 ~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~ 129 (330)
...+..++|+|++. +.++++.+++|++|+.+... ..+..+|. ..+.++.|+||+....
T Consensus 169 ~~~v~~~~~~~~~~-----------------~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~ 227 (433)
T 3bws_A 169 LGFVETISIPEHNE-----------------LWVSQMQANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPIRDLVY 227 (433)
T ss_dssp CCEEEEEEEGGGTE-----------------EEEEEGGGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETTTTEEE
T ss_pred CCceeEEEEcCCCE-----------------EEEEECCCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCCCCEEE
Confidence 33445555555554 45888899999999987654 34444665 3567899999998332
Q ss_pred cCCCCCCCcceeccCCC-Ccccee--eeeeEEEEecCCCeEEEeec-------cCCeEEEeeecccccccccccCCCCcE
Q psy682 130 PTSNNNAPVPKRHLGDN-FSQKLR--VRHNCFVTTVDSRFLLACGF-------WDNSFREPFTTMYLALQEGKFDHPNRL 199 (330)
Q Consensus 130 ~s~~~~~~~~~~~l~~~-~~~~~~--~~~~~~~~spDg~~i~asg~-------~D~tirl~w~~~~g~l~~~l~gH~d~V 199 (330)
.++..+..+..+.+... ....+. ....+++++|||++|++++. .|+.|++ |++.+++++..+ +|...+
T Consensus 228 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~-~d~~~~~~~~~~-~~~~~~ 305 (433)
T 3bws_A 228 CSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGI-YSMDKEKLIDTI-GPPGNK 305 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEE-EETTTTEEEEEE-EEEECE
T ss_pred EEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEE-EECCCCcEEeec-cCCCCc
Confidence 12222233444443211 111111 12357889999999777764 4889999 999888876654 333333
Q ss_pred ----EEe---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----------------
Q psy682 200 ----FSS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE---------------- 255 (330)
Q Consensus 200 ----iaS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~---------------- 255 (330)
+.+ .+.+ +++.|++|++|+. +|++++.+. +.. .|.+++|+|||+.|+.++
T Consensus 306 ~~~~~~~~g~~l~~---~~~~~~~v~v~d~~~~~~~~~~~-~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 306 RHIVSGNTENKIYV---SDMCCSKIEVYDLKEKKVQKSIP-VFD--KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEEEECSSTTEEEE---EETTTTEEEEEETTTTEEEEEEE-CSS--SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred ceEEECCCCCEEEE---EecCCCEEEEEECCCCcEEEEec-CCC--CCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 222 2222 7789999999986 588888886 445 799999999999887764
Q ss_pred CCeEEEEee-CCceeeeccCcccc
Q psy682 256 RGHIAAFTM-NGNRLRHESHNDNL 278 (330)
Q Consensus 256 ~~~~~~~s~-nG~~las~~~~~dV 278 (330)
++.+..|.. +|+.+........+
T Consensus 380 dg~v~~~d~~~~~~~~~~~~~~~~ 403 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWEAGNQP 403 (433)
T ss_dssp CCEEEEEETTTTEEEEEEECSSSE
T ss_pred ceEEEEEECCCCcEEEEecCCCCC
Confidence 248999986 66666666544333
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.68 E-value=5.2e-16 Score=158.83 Aligned_cols=226 Identities=8% Similarity=-0.095 Sum_probs=144.9
Q ss_pred cccC-CC-----cEEEeecccccccceeecCCCc------------------------eeEEEeCCCCCc----------
Q psy682 2 SGGD-KG-----IVEVWRTFNLALLYAFPSCDSS------------------------VRSLALSHDQKY---------- 41 (330)
Q Consensus 2 sgs~-d~-----~V~lW~~~~g~~l~tl~gH~~~------------------------V~svafSpdg~~---------- 41 (330)
+++. |+ +|++|++.+|+....+.+|... |.+++|||||+.
T Consensus 53 ~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~ 132 (741)
T 2ecf_A 53 FLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELY 132 (741)
T ss_dssp EEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEETTEEE
T ss_pred EEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEE
Confidence 3455 77 8999999999887777666543 899999999986
Q ss_pred ------C---cceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCC
Q psy682 42 ------S---PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAET 111 (330)
Q Consensus 42 ------~---~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~ 111 (330)
. .......+...+..++|||||+.| +.++ +..|++|+.+++...+.. .+...
T Consensus 133 ~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~l---------------a~~~---~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 133 LYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFV---------------SFIR---GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp EEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEE---------------EEEE---TTEEEEEETTTTEEEECCCCCCSS
T ss_pred EEECCCCCcceEEEcccCCcccccccCCCCCCEE---------------EEEe---CCcEEEEecCCCCEEEeccCCccc
Confidence 1 112223455668889999999975 2222 236999999876655443 22211
Q ss_pred C------------CCCCCCccccCCCc-eeccCCCCCC-------------------------------CcceeccCC-C
Q psy682 112 P------------GSPPGNLPLTLDPI-LTHPTSNNNA-------------------------------PVPKRHLGD-N 146 (330)
Q Consensus 112 ~------------~~~~~~l~fs~D~~-l~~~s~~~~~-------------------------------~~~~~~l~~-~ 146 (330)
+ ...+..+.|||||+ ++.++.+... .++.+.+.. .
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 0 00146799999999 5553332210 122223211 1
Q ss_pred Cccce------eeeeeEEEEecCCCeEEEeec----cCCeEEEeeecccccccccccCCCC--------cEEEe--HHHH
Q psy682 147 FSQKL------RVRHNCFVTTVDSRFLLACGF----WDNSFREPFTTMYLALQEGKFDHPN--------RLFSS--ISLA 206 (330)
Q Consensus 147 ~~~~~------~~~~~~~~~spDg~~i~asg~----~D~tirl~w~~~~g~l~~~l~gH~d--------~ViaS--t~~l 206 (330)
-...+ ......++| |||++|+.++. .+..|++ |++++|++...+.+|.+ ..+.. .+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE-VTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE-EETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE-EECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 00111 122357889 99999776543 3567899 99998887766665543 12332 3222
Q ss_pred HhhhccCCCcEEEEc--ccCceeeecCCCCCCCCCcEE-EeCCCccEEEE
Q psy682 207 WKNCQRDTSDVKVHT--TFGDLLRSLDPPSGFASPESV-VMSREGVIVVN 253 (330)
Q Consensus 207 W~~SgS~Dgtvkl~~--~~G~ll~tL~~h~~~~~v~~v-~fS~dG~~l~s 253 (330)
+++.||+++||. .+|+ ++.|.+|.. .|..+ +|||||+.|+.
T Consensus 353 ---~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 353 ---SSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAGLAYF 396 (741)
T ss_dssp ---EECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTTEEEE
T ss_pred ---EecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCCEEEE
Confidence 678899999985 4688 899999877 78887 59999986643
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.63 E-value=2.9e-15 Score=136.60 Aligned_cols=247 Identities=11% Similarity=0.123 Sum_probs=143.5
Q ss_pred cccCCCcEEEeecc-ccc--ccceeecCCCceeEEEeCCCCCcCcceeeeecC-ccEEEEEeCCC-CCeeEee------e
Q psy682 2 SGGDKGIVEVWRTF-NLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLD-DVCMSLKFPSN-SPICHVT------A 70 (330)
Q Consensus 2 sgs~d~~V~lW~~~-~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~-d~~~~v~Fs~~-~~v~~~~------~ 70 (330)
+++.|++|++|+++ +|+ .+.. ..|...+.+++|||||+. .+..... ..+....+.++ +....+. .
T Consensus 10 ~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~---l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (343)
T 1ri6_A 10 ASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRY---LYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 85 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSE---EEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred eCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCE---EEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence 45679999999995 343 3333 458889999999999986 1222222 33444344322 2221111 1
Q ss_pred ccceeccCCcE-EEEEcCCcceEEEeCCCCC---C-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC
Q psy682 71 NTYVTLHMPSV-VTVTANHQFAINRWNPDYA---A-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG 144 (330)
Q Consensus 71 ~~~~~~~~~~~-v~vS~~~~~tv~lW~~~~~---~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~ 144 (330)
...+.+++++. +.+++..++.|++|+.+.+ . .....++ ..+..+.|+||++ +.+++ ..+..+..+.+.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~ 159 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-----DGCHSANISPDNRTLWVPA-LKQDRICLFTVS 159 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-----TTBCCCEECTTSSEEEEEE-GGGTEEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-----CCceEEEECCCCCEEEEec-CCCCEEEEEEec
Confidence 11233444443 3455556788999998311 1 2222233 2467899999998 44322 122334444442
Q ss_pred C--CCcc----ceee----eeeEEEEecCCCeEEEeeccCCeEEEeeecc--cccc--ccccc----CCCC--c---E-E
Q psy682 145 D--NFSQ----KLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTM--YLAL--QEGKF----DHPN--R---L-F 200 (330)
Q Consensus 145 ~--~~~~----~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l--~~~l~----gH~d--~---V-i 200 (330)
. .+.. .+.. ...+++|+|||+++++++..+++|++ |+++ +|++ .+.+. +|.. . + +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV-WELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE-EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEE-EEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence 2 1110 0111 12468899999998888888999999 9984 3443 22221 2111 1 2 2
Q ss_pred Ee---HHHHHhhhccCCCcEEEEccc-----CceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682 201 SS---ISLAWKNCQRDTSDVKVHTTF-----GDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 265 (330)
Q Consensus 201 aS---t~~lW~~SgS~Dgtvkl~~~~-----G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n 265 (330)
.. .+.+ +++.|++|++|+.+ .+.+..+..+ + .+..++|+|||+.|+.+ +++.+..|.+|
T Consensus 239 s~dg~~l~v---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 239 TPDGRHLYA---CDRTASLITVFSVSEDGSVLSKEGFQPTE-T--QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CTTSSEEEE---EETTTTEEEEEEECTTSCCEEEEEEEECS-S--SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCCEEEE---EecCCCEEEEEEEcCCCCceEEeeeecCC-C--ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 21 2222 66789999999764 2445555543 2 48999999999977666 37899999776
No 135
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.63 E-value=4.2e-16 Score=156.11 Aligned_cols=241 Identities=9% Similarity=-0.039 Sum_probs=150.4
Q ss_pred cccC-CCcEEEeecccccccceeecCC-CceeEEEeCCCCCcCcceeeee--cCc--cEEEEEeCCCCCeeEeee---cc
Q psy682 2 SGGD-KGIVEVWRTFNLALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTV--LDD--VCMSLKFPSNSPICHVTA---NT 72 (330)
Q Consensus 2 sgs~-d~~V~lW~~~~g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~--~~d--~~~~v~Fs~~~~v~~~~~---~~ 72 (330)
+++. ||+++||++.+|+ ...+..|. ..|++++|||| ++ +..... ..+ .++.+....++....+.. ..
T Consensus 38 ~~s~~~g~~~lw~~~~g~-~~~lt~~~~~~~~~~~~spd-~~--l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~ 113 (582)
T 3o4h_A 38 VVGFSEGSVNAYLYDGGE-TVKLNREPINSVLDPHYGVG-RV--ILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMR 113 (582)
T ss_dssp EEEEETTEEEEEEEETTE-EEECCSSCCSEECEECTTCS-EE--EEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBE
T ss_pred EEEccCCceeEEEEcCCC-cEeeecccccccccccCCCC-eE--EEEeccCCCCcceEEEEEeccCCCccccccCCCCce
Confidence 3444 9999999996555 45555555 79999999999 54 211111 122 233333311333222211 11
Q ss_pred ceecc--CCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCC--CCcceeccCCCC
Q psy682 73 YVTLH--MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNN--APVPKRHLGDNF 147 (330)
Q Consensus 73 ~~~~~--~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~--~~~~~~~l~~~~ 147 (330)
...+. .+.++.++++.+..+ +|+.+++...++..+. ..++.|||||+ ++..+.+.. ..++.+.+...-
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLP------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEES------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred eeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCC------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 12233 334677777777655 9999887766665443 16799999999 443332211 224444432211
Q ss_pred ccceeee---eeEEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcE---E--------Ee---HHHHHh
Q psy682 148 SQKLRVR---HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRL---F--------SS---ISLAWK 208 (330)
Q Consensus 148 ~~~~~~~---~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~V---i--------aS---t~~lW~ 208 (330)
.+.+..+ ...++|||||++|+ ++..|+ .|++ |++++|++. .+.+|...+ . .| .+.+
T Consensus 187 ~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~-- 261 (582)
T 3o4h_A 187 LRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVT-VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV-- 261 (582)
T ss_dssp CEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEE-ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE--
T ss_pred ceEeecCCCccccceECCCCCEEE-EccCCCeeEEEE-EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE--
Confidence 1223322 35788999999976 556788 8898 999988887 777776654 1 22 2222
Q ss_pred hhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC---eEEEEeeCC
Q psy682 209 NCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG---HIAAFTMNG 266 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~---~~~~~s~nG 266 (330)
+++.||+++||.. |++++++. + .|.+++|| ||+++++++ +. .+..+..+|
T Consensus 262 -~~~~~g~~~l~~~-g~~~~~~~---~--~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 262 -VARREGRSAVFID-GERVEAPQ---G--NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -EEEETTEEEEEET-TEEECCCS---S--EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -EEEcCCcEEEEEE-CCeeccCC---C--ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 7889999999998 99887544 3 78999999 999998874 32 366666666
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.60 E-value=1.7e-14 Score=155.29 Aligned_cols=250 Identities=8% Similarity=-0.054 Sum_probs=154.4
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCCc------C-------cce----------eeeecCccE-------EE
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------S-------PMM----------FSTVLDDVC-------MS 56 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------~-------~l~----------~~~~~~d~~-------~~ 56 (330)
+.|++|++..|+ ...+.+|...|.+++|||||+. . -+. .++.|...+ ..
T Consensus 33 ~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ 111 (1045)
T 1k32_A 33 DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDV 111 (1045)
T ss_dssp TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEE
T ss_pred CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCccccccccccc
Confidence 678889886554 5677889999999999999885 1 011 123455556 78
Q ss_pred EEeCCCCCeeEeeecc----c--------------eecc-----------------------------------------
Q psy682 57 LKFPSNSPICHVTANT----Y--------------VTLH----------------------------------------- 77 (330)
Q Consensus 57 v~Fs~~~~v~~~~~~~----~--------------~~~~----------------------------------------- 77 (330)
+.|||||++++++... . ..+.
T Consensus 112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence 8899999866665422 0 0110
Q ss_pred ---------------------CCcEEEEEcCCcceEEEeCCC--CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682 78 ---------------------MPSVVTVTANHQFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN 133 (330)
Q Consensus 78 ---------------------~~~~v~vS~~~~~tv~lW~~~--~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~ 133 (330)
++ .+.++++.++++++|..+ +....++.+|. ....+.|||||+ ++.. .
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-----~~~~~~~SpDG~~la~~-~- 263 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-----DYYPRHLNTDGRRILFS-K- 263 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-----SSCEEEEEESSSCEEEE-E-
T ss_pred CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-----CcceeeEcCCCCEEEEE-e-
Confidence 22 344556677888999754 55556665664 244679999999 5432 2
Q ss_pred CCCCcceeccCCCCccceee--------------eeeEEEEe-cCCCeEEEeeccCCeEEEeeecccccccccccCCCC-
Q psy682 134 NNAPVPKRHLGDNFSQKLRV--------------RHNCFVTT-VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN- 197 (330)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~s-pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d- 197 (330)
+..++.+.+.......+.. ...+++|| |||++|+.++ ++.+.+ |+..+++..+ +.+|..
T Consensus 264 -~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~-~~~~~~~~~~-~~~~~~~ 338 (1045)
T 1k32_A 264 -GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFI-QDVSGTYVLK-VPEPLRI 338 (1045)
T ss_dssp -TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEE-ECTTSSBEEE-CSCCSCE
T ss_pred -CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEE-EcCCCCceEE-ccCCCcc
Confidence 2223333321100001111 23578899 9999855544 778888 8877665443 444544
Q ss_pred cE------------EEe-HHHHH---hh----------------------------hccCCCcEEEEcc-cCceeeecCC
Q psy682 198 RL------------FSS-ISLAW---KN----------------------------CQRDTSDVKVHTT-FGDLLRSLDP 232 (330)
Q Consensus 198 ~V------------iaS-t~~lW---~~----------------------------SgS~Dgtvkl~~~-~G~ll~tL~~ 232 (330)
.+ +++ ...+| +. +++.|++|++|+. +|++.+.+.+
T Consensus 339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~ 418 (1045)
T 1k32_A 339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 418 (1045)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence 11 111 11122 11 6778899999987 6787777778
Q ss_pred CCCCCCCcEEEeCCCccEEEEcc-C----------CeEEEEeeCCceeeec
Q psy682 233 PSGFASPESVVMSREGVIVVNYE-R----------GHIAAFTMNGNRLRHE 272 (330)
Q Consensus 233 h~~~~~v~~v~fS~dG~~l~s~~-~----------~~~~~~s~nG~~las~ 272 (330)
|.+ .|.+++|||||+.||+++ + ..+.+|..++..+..+
T Consensus 419 ~~~--~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 419 REA--MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp SSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCC--CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 888 899999999999998873 2 2566666554444443
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=9.4e-15 Score=148.82 Aligned_cols=205 Identities=10% Similarity=-0.002 Sum_probs=128.1
Q ss_pred ccCCCcEEEeecccccccceeecCCC---ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 3 GGDKGIVEVWRTFNLALLYAFPSCDS---SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~gH~~---~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
.+.||+|++|++.+|+....+.+|.. .|.+++|||||+.
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~-------------------------------------- 74 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY-------------------------------------- 74 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE--------------------------------------
T ss_pred EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE--------------------------------------
Confidence 36789999999999998888888876 4999999999887
Q ss_pred cEEEEEc-------CCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682 80 SVVTVTA-------NHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL 151 (330)
Q Consensus 80 ~~v~vS~-------~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~ 151 (330)
+++++. +.+..+.+|+.+++....+..+.. ....+.++.|||||+ ++..+. ..++.+.+...-...+
T Consensus 75 -l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 75 -ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRV 149 (723)
T ss_dssp -EEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEE
T ss_pred -EEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEEEC---CeEEEEECCCCceEEE
Confidence 122222 224678999998776544432211 012467899999998 554222 2344444322111111
Q ss_pred -ee---------------------eeeEEEEecCCCeEEEeeccCC----------------------------------
Q psy682 152 -RV---------------------RHNCFVTTVDSRFLLACGFWDN---------------------------------- 175 (330)
Q Consensus 152 -~~---------------------~~~~~~~spDg~~i~asg~~D~---------------------------------- 175 (330)
.. +..++++||||++|+.+. .|.
T Consensus 150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA-INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE-EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE-ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 11 114788999999966654 332
Q ss_pred eEEEeeecccccccccccCC------CCcE----EEe--H-HHHHhhhccCCCcEEEEcc-cCceeeecCCC-CCCCCC-
Q psy682 176 SFREPFTTMYLALQEGKFDH------PNRL----FSS--I-SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPP-SGFASP- 239 (330)
Q Consensus 176 tirl~w~~~~g~l~~~l~gH------~d~V----iaS--t-~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h-~~~~~v- 239 (330)
+|++ |++.+++....+..| ...+ ++. . +..+...++.+++|.+|+. +|++.+.+..+ .+ .+
T Consensus 229 ~l~~-~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~ 305 (723)
T 1xfd_A 229 SLHV-IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA--WLH 305 (723)
T ss_dssp EEEE-EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS--CCC
T ss_pred EEEE-EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC--EEe
Confidence 7888 999888765556554 3333 111 1 1111113445678888976 67777766543 33 44
Q ss_pred ---cEEEeCCCccEEEEc
Q psy682 240 ---ESVVMSREGVIVVNY 254 (330)
Q Consensus 240 ---~~v~fS~dG~~l~s~ 254 (330)
..++|||||+.|+..
T Consensus 306 ~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 306 RQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCCEECTTSCSEEEE
T ss_pred ccCCCceEcCCCCeEEEE
Confidence 389999999977643
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.58 E-value=6.8e-15 Score=150.52 Aligned_cols=254 Identities=11% Similarity=0.043 Sum_probs=156.2
Q ss_pred CcEEEeeccccc--ccceeecCCCceeEEEeCCCCCc------Ccceee-----------eecCcc--------------
Q psy682 7 GIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKY------SPMMFS-----------TVLDDV-------------- 53 (330)
Q Consensus 7 ~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~------~~l~~~-----------~~~~d~-------------- 53 (330)
++|++|++.+|+ .+..+..|...+.+++|||||+. ..+... ..+...
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~ 208 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM 208 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence 789999998773 56778899999999999999996 111111 111111
Q ss_pred --EEEEEeCCCCCeeEeeeccceecc--------CC--cEEEE------EcCCcceEEEeCCCC-CCcccCC---CCCCC
Q psy682 54 --CMSLKFPSNSPICHVTANTYVTLH--------MP--SVVTV------TANHQFAINRWNPDY-AASIQSP---SYAET 111 (330)
Q Consensus 54 --~~~v~Fs~~~~v~~~~~~~~~~~~--------~~--~~v~v------S~~~~~tv~lW~~~~-~~~~~~~---~h~~~ 111 (330)
+..+.|||||+.|++......... +. ....+ ..+....|.+|+.++ +...... +|.
T Consensus 209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-- 286 (741)
T 2ecf_A 209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD-- 286 (741)
T ss_dssp CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS--
T ss_pred ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc--
Confidence 356889999998766643210000 00 00000 011233688888877 6544332 243
Q ss_pred CCCCCCCccccCCCc-eeccCCCC---CCCcceeccCCC-Cccceeeee-------eEEEEecCCCeEEEeeccCCeEEE
Q psy682 112 PGSPPGNLPLTLDPI-LTHPTSNN---NAPVPKRHLGDN-FSQKLRVRH-------NCFVTTVDSRFLLACGFWDNSFRE 179 (330)
Q Consensus 112 ~~~~~~~l~fs~D~~-l~~~s~~~---~~~~~~~~l~~~-~~~~~~~~~-------~~~~~spDg~~i~asg~~D~tirl 179 (330)
..+..+.| |||+ ++..+.+. ...++.+.+... ..+.+..+. .+++|+|||++ +.+++.|++++|
T Consensus 287 --~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~g~~~l 362 (741)
T 2ecf_A 287 --IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI-LWSSERTGFQHL 362 (741)
T ss_dssp --EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE-EEEECTTSSCEE
T ss_pred --eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE-EEEecCCCccEE
Confidence 24567999 9999 44322211 112233332211 111112221 36789999996 555668998998
Q ss_pred eeecc-cccccccccCCCCcE--E--Ee----HHHHHhhhccCCC--cEEEEcc--cCceeeecCCCCCCCCCcEEEeCC
Q psy682 180 PFTTM-YLALQEGKFDHPNRL--F--SS----ISLAWKNCQRDTS--DVKVHTT--FGDLLRSLDPPSGFASPESVVMSR 246 (330)
Q Consensus 180 ~w~~~-~g~l~~~l~gH~d~V--i--aS----t~~lW~~SgS~Dg--tvkl~~~--~G~ll~tL~~h~~~~~v~~v~fS~ 246 (330)
|..+ +|+ ...+.+|...| + .| .+.. +++.|+ +++||.. +|+.++.|.+ .. .+.+++|||
T Consensus 363 -~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~---~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~--~~~~~~~sp 434 (741)
T 2ecf_A 363 -YRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYF---RAGIESARESQIYAVPLQGGQPQRLSK-AP--GMHSASFAR 434 (741)
T ss_dssp -EEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEE---EECSSCTTCBEEEEEETTCCCCEECCC-SC--SEEEEEECT
T ss_pred -EEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEE---EEeCCCCceEEEEEEEcCCCCeeeccc-CC--CceEEEECC
Confidence 8764 466 66777776655 2 23 2222 667777 9999975 5888888887 44 689999999
Q ss_pred CccEEEEc-c-C---CeEEEEeeCCceeeeccC
Q psy682 247 EGVIVVNY-E-R---GHIAAFTMNGNRLRHESH 274 (330)
Q Consensus 247 dG~~l~s~-~-~---~~~~~~s~nG~~las~~~ 274 (330)
||+.|+.. + . ..+.++..+|+.+..+..
T Consensus 435 dg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~ 467 (741)
T 2ecf_A 435 NASVYVDSWSNNSTPPQIELFRANGEKIATLVE 467 (741)
T ss_dssp TSSEEEEEEEETTEEEEEEEEETTSCEEECSSC
T ss_pred CCCEEEEEecCCCCCCeEEEEEcCCCeEEEecc
Confidence 99988776 2 2 358888888987776653
No 139
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.57 E-value=4.2e-13 Score=125.39 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=148.2
Q ss_pred ccCCCcEEEeecc--cccccceeecCCCceeEEEeCCCCCcCcceeeee---cCccEEEEEeCCC-CCeeEeeec-----
Q psy682 3 GGDKGIVEVWRTF--NLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTV---LDDVCMSLKFPSN-SPICHVTAN----- 71 (330)
Q Consensus 3 gs~d~~V~lW~~~--~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~---~~d~~~~v~Fs~~-~~v~~~~~~----- 71 (330)
++.++.|.+|+++ +|++......|......++|||||+. +.+... ....+....+.++ +.+..+...
T Consensus 23 ~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~--l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 23 SGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKF--VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp SSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSE--EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCE--EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 4568899999874 45543332238888999999999986 222121 2246666677776 544333211
Q ss_pred --cceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCC---CCCCCC-------CCCCCCccccCCCc-eeccCCCCCCC
Q psy682 72 --TYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSP---SYAETP-------GSPPGNLPLTLDPI-LTHPTSNNNAP 137 (330)
Q Consensus 72 --~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~---~h~~~~-------~~~~~~l~fs~D~~-l~~~s~~~~~~ 137 (330)
....+ ....+.++...+++|.+|+.+... +.... .|.+.- ...+.++.|+||++ +.+ +..++..
T Consensus 101 ~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~ 178 (361)
T 3scy_A 101 DPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA-DDLGTDQ 178 (361)
T ss_dssp CEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE-EETTTTE
T ss_pred CcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE-EeCCCCE
Confidence 11233 333445555578899999986432 22211 111100 01124599999998 443 2222333
Q ss_pred cceeccCCC--------Ccc-----cee----eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc--ccccc---CC
Q psy682 138 VPKRHLGDN--------FSQ-----KLR----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL--QEGKF---DH 195 (330)
Q Consensus 138 ~~~~~l~~~--------~~~-----~~~----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l--~~~l~---gH 195 (330)
+..+.+... +.. ... .....++|+|||+++++++..+++|++ |++++|++ ++.+. ++
T Consensus 179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v-~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA-FRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE-EEEETTEEEEEEEEESCSSC
T ss_pred EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE-EEecCCceEEeEEEecCCCC
Confidence 444433211 100 000 112478899999998888878999999 99987765 33232 22
Q ss_pred CC---cE-EEe---HHHHHhhhccC-CCcEEEEcc---cCc--eeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEE
Q psy682 196 PN---RL-FSS---ISLAWKNCQRD-TSDVKVHTT---FGD--LLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIA 260 (330)
Q Consensus 196 ~d---~V-iaS---t~~lW~~SgS~-Dgtvkl~~~---~G~--ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~ 260 (330)
.. .+ +.. .+.+ +... +++|.+|+. +|+ .+..+.. .. .+..++|||||+.|+.+ .++.+.
T Consensus 258 ~~~~~~i~~spdg~~l~v---~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~--~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYA---SNRLKADGVAIFKVDETNGTLTKVGYQLT-GI--HPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp CCCEEEEEECTTSSEEEE---EECSSSCEEEEEEECTTTCCEEEEEEEEC-SS--CCCEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCcccEEECCCCCEEEE---ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC--CCceEEECCCCCEEEEEECCCCCEE
Confidence 22 12 222 1211 4555 689999976 466 4555554 33 78999999999977776 467899
Q ss_pred EEeeC
Q psy682 261 AFTMN 265 (330)
Q Consensus 261 ~~s~n 265 (330)
+|.+|
T Consensus 332 v~~~d 336 (361)
T 3scy_A 332 IFERD 336 (361)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 98776
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.57 E-value=4.5e-14 Score=142.87 Aligned_cols=246 Identities=11% Similarity=-0.011 Sum_probs=158.9
Q ss_pred cccCCCcEEEeec--ccccccceeecCCCceeEEEeCC----CCCc-------------------Ccceeeee-------
Q psy682 2 SGGDKGIVEVWRT--FNLALLYAFPSCDSSVRSLALSH----DQKY-------------------SPMMFSTV------- 49 (330)
Q Consensus 2 sgs~d~~V~lW~~--~~g~~l~tl~gH~~~V~svafSp----dg~~-------------------~~l~~~~~------- 49 (330)
+++.|++|++||+ .+++.+.+++ +...++.|+||| ||++ .++...+.
T Consensus 195 v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 195 VIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred EECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 5677899999999 8899999998 456789999999 9997 11111111
Q ss_pred ---c-CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCccc--CCCCCCCCCCCCCCccccC
Q psy682 50 ---L-DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTL 123 (330)
Q Consensus 50 ---~-~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~--~~~h~~~~~~~~~~l~fs~ 123 (330)
| +..+..+.|+|+++. +.++...+++|.+|+........ ...+. ..+..+.|+|
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~----------------~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~----~~~~~~~~sp 333 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPE----------------FIVNVKETGKVLLVNYKDIDNLTVTSIGAA----PFLHDGGWDS 333 (543)
T ss_dssp CCEESCCCEEEEEECSSSSE----------------EEEEETTTTEEEEEECTTSSSCEEEEEECC----SSCCCEEECT
T ss_pred cccccCCceEEEEECCCCCE----------------EEEEECCCCeEEEEEecCCCcceeEEeccC----cCccCceECC
Confidence 1 124566667776665 35777788899999986533211 22332 3466799999
Q ss_pred CCceeccCCCCCCCcceeccCC-CCccceee----ee---eEEEEecCCCeEEEeec-cCCeEEEeeeccc-------cc
Q psy682 124 DPILTHPTSNNNAPVPKRHLGD-NFSQKLRV----RH---NCFVTTVDSRFLLACGF-WDNSFREPFTTMY-------LA 187 (330)
Q Consensus 124 D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~----~~---~~~~~spDg~~i~asg~-~D~tirl~w~~~~-------g~ 187 (330)
|++++..++..+..+..+.+.. .+..++.+ |. ..+ ++||+..++++++ .|++|++ |++++ ++
T Consensus 334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v-~d~~~~~~~~~~~~ 411 (543)
T 1nir_A 334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL-IGTDPKNHPQYAWK 411 (543)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE-EECCTTTCTTTBTS
T ss_pred CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE-EEeCCCCCchhcCe
Confidence 9994322222233333343321 12223332 21 122 5788445566664 6899999 99988 89
Q ss_pred ccccccCCCCcE--EE-e--HHHHHhhhcc-------CCCcEEEEcc-cCcee-eec--------CCCCCCCCCcEEEeC
Q psy682 188 LQEGKFDHPNRL--FS-S--ISLAWKNCQR-------DTSDVKVHTT-FGDLL-RSL--------DPPSGFASPESVVMS 245 (330)
Q Consensus 188 l~~~l~gH~d~V--ia-S--t~~lW~~SgS-------~Dgtvkl~~~-~G~ll-~tL--------~~h~~~~~v~~v~fS 245 (330)
+++++.+|...+ ++ + --.|| +++ .|++|.+|+. +++.+ +.| ..|.. +|..+.|+
T Consensus 412 ~v~~l~~~g~~~~~v~~~pdg~~l~--v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~ 487 (543)
T 1nir_A 412 KVAELQGQGGGSLFIKTHPKSSHLY--VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK--RVVQPEYN 487 (543)
T ss_dssp EEEEEECSCSCCCCEECCTTCCEEE--ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC--EEEEEEEC
T ss_pred EEEEEEcCCCCceEEEcCCCCCcEE--EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC--ceEeccCC
Confidence 999999997664 22 1 22344 233 2789999976 57766 454 34444 89999999
Q ss_pred CCccEEEEc-----c-CCeEEEEe-eCCceeeeccC
Q psy682 246 REGVIVVNY-----E-RGHIAAFT-MNGNRLRHESH 274 (330)
Q Consensus 246 ~dG~~l~s~-----~-~~~~~~~s-~nG~~las~~~ 274 (330)
|||+.|..+ + ++.|++|. ..|++++..+.
T Consensus 488 ~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 488 KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 999998854 2 57888885 44666666653
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.57 E-value=6.2e-14 Score=130.13 Aligned_cols=218 Identities=12% Similarity=0.157 Sum_probs=127.2
Q ss_pred CCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeeee-cCccEEEEEeCCCCCeeEeeec----------
Q psy682 5 DKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTV-LDDVCMSLKFPSNSPICHVTAN---------- 71 (330)
Q Consensus 5 ~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~-~~d~~~~v~Fs~~~~v~~~~~~---------- 71 (330)
.++.|++|++.+|+ .+..+..|...+..|+|||||+. .+... .+..+..+...+++..-.+...
T Consensus 61 ~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~---l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~ 137 (347)
T 3hfq_A 61 DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL---VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE 137 (347)
T ss_dssp TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE---EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE---EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence 36899999997765 55666778999999999999986 12122 2233444444334332222110
Q ss_pred ------cceeccCCcEEEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceecc
Q psy682 72 ------TYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHL 143 (330)
Q Consensus 72 ------~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l 143 (330)
..+.+++++.+.++...+..|++|+.+ .+.+.............+..+.|+||++ +.++ ...+..+..+.+
T Consensus 138 ~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~ 216 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA-GELSSQIASLKY 216 (347)
T ss_dssp CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEE
T ss_pred ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE-eCCCCEEEEEEe
Confidence 013445555455777778889999987 3332211110111112455689999998 4432 222222222322
Q ss_pred C---CCCc--ccee---------eeeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEEEeHHHHHh
Q psy682 144 G---DNFS--QKLR---------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLFSSISLAWK 208 (330)
Q Consensus 144 ~---~~~~--~~~~---------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~ViaSt~~lW~ 208 (330)
. +.+. +.+. .....++|+|||++|+++...+++|++ |+++. |++
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v-~~~~~~g~~-------------------- 275 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV-FAVTADGHL-------------------- 275 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE-EEECGGGCE--------------------
T ss_pred cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE-EEECCCCcE--------------------
Confidence 1 1110 0000 123468899999998888878999999 99852 211
Q ss_pred hhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682 209 NCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN 265 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n 265 (330)
+.+.++..+.. .+..++|||||+.|+.+ +++.+.+|.+|
T Consensus 276 ----------------~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 276 ----------------TLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ----------------EEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ----------------EEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 11222333333 68999999999977776 35789999765
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.55 E-value=2.3e-14 Score=146.07 Aligned_cols=225 Identities=10% Similarity=-0.038 Sum_probs=128.0
Q ss_pred ccCCCcEEEeeccccccc-ceeecCC-----------------CceeEEEeCCCCCc-----Cccee----------eee
Q psy682 3 GGDKGIVEVWRTFNLALL-YAFPSCD-----------------SSVRSLALSHDQKY-----SPMMF----------STV 49 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l-~tl~gH~-----------------~~V~svafSpdg~~-----~~l~~----------~~~ 49 (330)
++.|+ | +||+.+|+.+ ..+..|. ..|.+++||||+.+ ..+.. ...
T Consensus 41 ~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~ 118 (706)
T 2z3z_A 41 IEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFD 118 (706)
T ss_dssp EETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred EeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEECCCCceEEccC
Confidence 44566 8 9999999885 5665554 56999999999444 00100 112
Q ss_pred cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-----CCcccCC-CCCCCC----------C
Q psy682 50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-----AASIQSP-SYAETP----------G 113 (330)
Q Consensus 50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-----~~~~~~~-~h~~~~----------~ 113 (330)
+...+..++|||||+.+ |.. .+..|++|+.++ +...+.. .+...+ .
T Consensus 119 ~~~~~~~~~~SpdG~~l-----------------a~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 119 TNEETASLDFSPVGDRV-----------------AYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp CTTCCTTCEECTTSSEE-----------------EEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred CcccccCCcCCCCCCEE-----------------EEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 22334445566666653 332 457899999976 5544432 222110 0
Q ss_pred CCCCCccccCCCc-eeccCCC-------------------------------CCCCcceeccCCCCcccee------eee
Q psy682 114 SPPGNLPLTLDPI-LTHPTSN-------------------------------NNAPVPKRHLGDNFSQKLR------VRH 155 (330)
Q Consensus 114 ~~~~~l~fs~D~~-l~~~s~~-------------------------------~~~~~~~~~l~~~~~~~~~------~~~ 155 (330)
..+.++.||||++ ++.++.+ ....+..+.+...-...+. ...
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 260 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL 260 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence 1147899999999 5543311 1122233333211000011 123
Q ss_pred eEEEEecCCCeEEEeeccCC-----eEEEeeecccc-cccccccC-CCC-------cEEEe----HHHHHhhhccCCCcE
Q psy682 156 NCFVTTVDSRFLLACGFWDN-----SFREPFTTMYL-ALQEGKFD-HPN-------RLFSS----ISLAWKNCQRDTSDV 217 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~-----tirl~w~~~~g-~l~~~l~g-H~d-------~ViaS----t~~lW~~SgS~Dgtv 217 (330)
.+++|+|||++|++++ .|+ +|++ |+.++| ++...... +.. ..+.. .. +| +++.||++
T Consensus 261 ~~~~~spdg~~l~~~~-~~~~~~~~~v~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~--~~~~~g~~ 335 (706)
T 2z3z_A 261 TNLSWSPDENILYVAE-VNRAQNECKVNA-YDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IW--QSRRDGWN 335 (706)
T ss_dssp EEEEECTTSSEEEEEE-ECTTSCEEEEEE-EETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EE--EECTTSSC
T ss_pred eeEEEECCCCEEEEEE-eCCCCCeeEEEE-EECCCCceeeEEEEccCCCeECccCCceeecCCCCEE-EE--EEccCCcc
Confidence 4788999999866554 565 8999 999888 33222211 111 12321 11 11 67889999
Q ss_pred EEEcc--cCceeeecCCCCCCCCCcE-EEeCCCccEEEEc
Q psy682 218 KVHTT--FGDLLRSLDPPSGFASPES-VVMSREGVIVVNY 254 (330)
Q Consensus 218 kl~~~--~G~ll~tL~~h~~~~~v~~-v~fS~dG~~l~s~ 254 (330)
+||.. +|+.++.|.+|.. .|.. ++|||||+.|+.+
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEE
Confidence 99954 6899999998876 6776 8999999877554
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.53 E-value=8.9e-15 Score=129.39 Aligned_cols=201 Identities=10% Similarity=-0.036 Sum_probs=125.8
Q ss_pred CCCcEEEeeccc-ccccceeecCC-CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682 5 DKGIVEVWRTFN-LALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV 82 (330)
Q Consensus 5 ~d~~V~lW~~~~-g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v 82 (330)
.++.|++|++.+ ++....+.+|. ..|.+++|||||+. ++
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~---------------------------------------l~ 100 (297)
T 2ojh_A 60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL---------------------------------------YA 100 (297)
T ss_dssp ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE---------------------------------------EE
T ss_pred cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE---------------------------------------EE
Confidence 378999999988 88777777774 77888888888877 23
Q ss_pred EEEcCCcceEEEeC--CCCCCcccCCCCCCCCCCCCCCccccCCCc-ee-ccCCCCCCCcceeccCCCCcccee---eee
Q psy682 83 TVTANHQFAINRWN--PDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT-HPTSNNNAPVPKRHLGDNFSQKLR---VRH 155 (330)
Q Consensus 83 ~vS~~~~~tv~lW~--~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~-~~s~~~~~~~~~~~l~~~~~~~~~---~~~ 155 (330)
.++.+.+..+++|. .++........+. .+..+.|+||++ ++ ++..++...++...+...-...+. ...
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 101 ISDKVEFGKSAIYLLPSTGGTPRLMTKNL-----PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp EEECTTTSSCEEEEEETTCCCCEECCSSS-----SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred EEEeCCCCcceEEEEECCCCceEEeecCC-----CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 34423333345554 4455444444442 356789999998 44 222223223333322211111111 123
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecc-cccccccccCCCCcEE----Ee--HHHHHhhhccCC-----------CcE
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTM-YLALQEGKFDHPNRLF----SS--ISLAWKNCQRDT-----------SDV 217 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~D-----------gtv 217 (330)
.+++++|||++|+.++..|+.+++ |.++ .++....+..|...+. .. ...+ .++.| +.|
T Consensus 176 ~~~~~s~dg~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~---~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSSRTGQMQI-WRVRVDGSSVERITDSAYGDWFPHPSPSGDKVV---FVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEE-EEEETTSSCEEECCCCSEEEEEEEECTTSSEEE---EEEEETTCCSCCSSEEEEE
T ss_pred ccceECCCCCEEEEEecCCCCccE-EEECCCCCCcEEEecCCcccCCeEECCCCCEEE---EEEcCCCCCcccccCceEE
Confidence 578899999998877767999999 9886 4666667777776551 11 1111 23333 568
Q ss_pred EEEccc-Cce--eeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682 218 KVHTTF-GDL--LRSLDPPSGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 218 kl~~~~-G~l--l~tL~~h~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
.+|+.+ |+. +..+.+|.. .+..++|||||+.|+.++
T Consensus 252 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDLFGGQG--TMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EEEETTSCSCEEEEEEEESTT--TSCSCCBCTTSSEEEEEE
T ss_pred EEEecCCCCceeeeccCCCCc--ccccceECCCCCEEEEEE
Confidence 889875 444 444557777 899999999999888874
No 144
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=1.2e-12 Score=122.35 Aligned_cols=216 Identities=11% Similarity=0.097 Sum_probs=139.4
Q ss_pred CcEEEeecccccccceee-cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEE
Q psy682 7 GIVEVWRTFNLALLYAFP-SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVT 85 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS 85 (330)
++|.+|+..+|+.+..+. ++-...++|||+|||++ .|+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l-----------------------------------------~v~ 107 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY-----------------------------------------WVT 107 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE-----------------------------------------EEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE-----------------------------------------EEE
Confidence 578888887777766554 45556777777777665 255
Q ss_pred cCCcceEEEeCCCCC--CcccCC-----CCCCCCCCCCCCccccC-CCceeccCCCCCCCcceeccCCCCcccee-----
Q psy682 86 ANHQFAINRWNPDYA--ASIQSP-----SYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFSQKLR----- 152 (330)
Q Consensus 86 ~~~~~tv~lW~~~~~--~~~~~~-----~h~~~~~~~~~~l~fs~-D~~l~~~s~~~~~~~~~~~l~~~~~~~~~----- 152 (330)
...+..|++|++++. .+.+.. |....-...+..++|+| ++.+.++.+..+..+......+.+...+.
T Consensus 108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG 187 (329)
T ss_dssp ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence 556667888888766 233321 11111123466799999 78854422112233333332222222121
Q ss_pred --------eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE----------EEeHHHHHhhhcc
Q psy682 153 --------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL----------FSSISLAWKNCQR 212 (330)
Q Consensus 153 --------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V----------iaSt~~lW~~SgS 212 (330)
.....++++||+..|+++.+.+++|++ |+.++|+++..+. ++.+.+ +++.-.+|- +.+
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v-~~~ 265 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC-FKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYF-GDQ 265 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE-EETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCT-TCS
T ss_pred CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE-EECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEe-ccC
Confidence 113578899995566888888999999 9998798877763 233322 222111111 677
Q ss_pred CCCcEEEEc-ccCceeeecC---CCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCc
Q psy682 213 DTSDVKVHT-TFGDLLRSLD---PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGN 267 (330)
Q Consensus 213 ~Dgtvkl~~-~~G~ll~tL~---~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~ 267 (330)
.+.+|++|+ .+|+++.++. ++.. .|..|+|+|||+++|+. .+++|..|.++|+
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~--~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFD--MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCS--SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccC--CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 888999997 5899999984 4555 79999999999888887 5889999999875
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=147.62 Aligned_cols=211 Identities=10% Similarity=0.034 Sum_probs=129.5
Q ss_pred cCCCcEEEeecccccccceeecCCC---ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682 4 GDKGIVEVWRTFNLALLYAFPSCDS---SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS 80 (330)
Q Consensus 4 s~d~~V~lW~~~~g~~l~tl~gH~~---~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~ 80 (330)
+.|++|++|++.+|+....+.+|.. .|.+++|||||+.
T Consensus 33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~--------------------------------------- 73 (719)
T 1z68_A 33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF--------------------------------------- 73 (719)
T ss_dssp CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE---------------------------------------
T ss_pred cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe---------------------------------------
Confidence 4689999999999888777777755 4889999998887
Q ss_pred EEEEEc-------CCcceEEEeCCCCCCc---ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCcc
Q psy682 81 VVTVTA-------NHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQ 149 (330)
Q Consensus 81 ~v~vS~-------~~~~tv~lW~~~~~~~---~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~ 149 (330)
++.++. +.+.+|++|+.+++.. ..+. ..+.++.|||||+ ++.. . +..+..+.+...-..
T Consensus 74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-------~~~~~~~~SPDG~~la~~-~--~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-------RPIQYLCWSPVGSKLAYV-Y--QNNIYLKQRPGDPPF 143 (719)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-------SSBCCEEECSSTTCEEEE-E--TTEEEEESSTTSCCE
T ss_pred EEEEecCceeEEeecceEEEEEECCCCccccceecC-------cccccceECCCCCEEEEE-E--CCeEEEEeCCCCCcE
Confidence 222332 2368899999987765 3331 3467799999999 5532 2 223444443221100
Q ss_pred ce--ee--------------------eeeEEEEecCCCeEEEeeccCC--------------------------------
Q psy682 150 KL--RV--------------------RHNCFVTTVDSRFLLACGFWDN-------------------------------- 175 (330)
Q Consensus 150 ~~--~~--------------------~~~~~~~spDg~~i~asg~~D~-------------------------------- 175 (330)
.+ .+ ...++++||||++|+.++ .|.
T Consensus 144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE-FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE-EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE-ECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 01 01 113788999999966554 442
Q ss_pred --eEEEeeeccccccc--------ccccCCCCcEE----Ee--HHHHHhhhccCCCc--EEEEc----c-cCceeeec--
Q psy682 176 --SFREPFTTMYLALQ--------EGKFDHPNRLF----SS--ISLAWKNCQRDTSD--VKVHT----T-FGDLLRSL-- 230 (330)
Q Consensus 176 --tirl~w~~~~g~l~--------~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgt--vkl~~----~-~G~ll~tL-- 230 (330)
+|++ |++++++.. ..+.+|...+. ++ .+.+ ..+...+++ |.+|+ . +|+..+.+
T Consensus 223 ~~~l~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~-~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~ 300 (719)
T 1z68_A 223 VVRIFI-IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL-QWLKRVQNVSVLSICDFREDWQTWDCPKTQEH 300 (719)
T ss_dssp EEEEEE-EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE-EEEESSTTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred eeEEEE-EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEE-EEeccccCeEEEEEEcccCCCCCCceEEEEec
Confidence 7888 999887753 33456766551 11 1111 001223333 55567 4 46776666
Q ss_pred --CCCCCCCCCc-----EEEeCCCccEEEE--c-cCC--eEEEEeeCCce
Q psy682 231 --DPPSGFASPE-----SVVMSREGVIVVN--Y-ERG--HIAAFTMNGNR 268 (330)
Q Consensus 231 --~~h~~~~~v~-----~v~fS~dG~~l~s--~-~~~--~~~~~s~nG~~ 268 (330)
.+|.+ .|. .++|||||+.++. . .++ .|..|..+|..
T Consensus 301 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 301 IEESRTG--WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp EEECSSS--CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccccCCc--eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 47776 676 8999999996544 2 222 46666655543
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.50 E-value=3.1e-13 Score=124.13 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=139.9
Q ss_pred CCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Cccee-----------eeecCc---------cEEEE
Q psy682 6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPMMF-----------STVLDD---------VCMSL 57 (330)
Q Consensus 6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l~~-----------~~~~~d---------~~~~v 57 (330)
+++|.+|+..+++.+.+++.. ..+.+++|+|||+. ..+.. ...+.. ....+
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred CccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence 789999999999988888764 44789999999985 00111 111110 13445
Q ss_pred EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCC-CCCCCCCCCCCccccCCCc-eeccCCCCC
Q psy682 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS-YAETPGSPPGNLPLTLDPI-LTHPTSNNN 135 (330)
Q Consensus 58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~-h~~~~~~~~~~l~fs~D~~-l~~~s~~~~ 135 (330)
.|+|++..+ +++..+.+..|.+|+........... +. ..+..+.|+||+. +.+++. +
T Consensus 147 ~~s~dg~~l---------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~--~ 205 (353)
T 3vgz_A 147 VADDATNTV---------------YISGIGKESVIWVVDGGNIKLKTAIQNTG----KMSTGLALDSEGKRLYTTNA--D 205 (353)
T ss_dssp EEETTTTEE---------------EEEEESSSCEEEEEETTTTEEEEEECCCC----TTCCCCEEETTTTEEEEECT--T
T ss_pred EECCCCCEE---------------EEEecCCCceEEEEcCCCCceEEEecCCC----CccceEEECCCCCEEEEEcC--C
Confidence 566666554 22222457789999987665443322 33 2467899999998 444222 2
Q ss_pred CCcceeccCCC-Cccceee-------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC-cE-EEeH-H
Q psy682 136 APVPKRHLGDN-FSQKLRV-------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN-RL-FSSI-S 204 (330)
Q Consensus 136 ~~~~~~~l~~~-~~~~~~~-------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d-~V-iaSt-~ 204 (330)
..+..+.+... ....+.. ....++++|||++++++...++.|.+ |+..+++++..+..+.. .+ +... -
T Consensus 206 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~-~d~~~~~~~~~~~~~~~~~~~~s~dg~ 284 (353)
T 3vgz_A 206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV-VDTRNGNILAKVAAPESLAVLFNPARN 284 (353)
T ss_dssp SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE-EETTTCCEEEEEECSSCCCEEEETTTT
T ss_pred CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE-EECCCCcEEEEEEcCCCceEEECCCCC
Confidence 23333332111 1111111 12357899999998888877799999 99988887655543322 23 3321 1
Q ss_pred HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682 205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY 254 (330)
Q Consensus 205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~ 254 (330)
.+|- +...|++|.+|+. +|+.++++..+. .+..++|+|||+.|+.+
T Consensus 285 ~l~v-~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 285 EAYV-THRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSADGKTLYVS 331 (353)
T ss_dssp EEEE-EETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTTSCEEEEE
T ss_pred EEEE-EECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCCCCEEEEE
Confidence 1222 6678999999976 689998887643 58999999999955443
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.48 E-value=2.2e-13 Score=123.76 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=138.5
Q ss_pred CcccCCCcEEEeecccccccceeecCC-C-ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCD-S-SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM 78 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~-~-~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~ 78 (330)
++++.|++|++||+.+++.+.++.... . .+.+++|||||+.
T Consensus 5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~------------------------------------- 47 (337)
T 1pby_B 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI------------------------------------- 47 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-------------------------------------
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE-------------------------------------
Confidence 467889999999999999888886433 2 4788889888876
Q ss_pred CcEEEEEcCCcceEEEeCCCCCCccc-CC-CCCCCCCCCCCCccccCCCc-eeccCC------C----CCCCcceeccCC
Q psy682 79 PSVVTVTANHQFAINRWNPDYAASIQ-SP-SYAETPGSPPGNLPLTLDPI-LTHPTS------N----NNAPVPKRHLGD 145 (330)
Q Consensus 79 ~~~v~vS~~~~~tv~lW~~~~~~~~~-~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~------~----~~~~~~~~~l~~ 145 (330)
+.++++.+..|.+|+........ .. ++.......+..+.|+||++ ++++.. + .+..+..+.+..
T Consensus 48 ---l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 124 (337)
T 1pby_B 48 ---AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET 124 (337)
T ss_dssp ---EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred ---EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC
Confidence 23556667789999986655332 22 22000011466899999997 444221 0 123333444321
Q ss_pred C-Cccceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC--CcE-EEe-HHHHHhhhccCCC---
Q psy682 146 N-FSQKLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP--NRL-FSS-ISLAWKNCQRDTS--- 215 (330)
Q Consensus 146 ~-~~~~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~--d~V-iaS-t~~lW~~SgS~Dg--- 215 (330)
. ..+.+.. ...+++++|||++|+++ ++.|++ |+++++++...+..+. ..+ +.. -..+|- ++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~~~ 199 (337)
T 1pby_B 125 LSRRKAFEAPRQITMLAWARDGSKLYGL---GRDLHV-MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN-QHESSGVMA 199 (337)
T ss_dssp TEEEEEEECCSSCCCEEECTTSSCEEEE---SSSEEE-EETTTTEEEEEECSTTTTTTTBCCCBCCCCCC-CCTTTTEEE
T ss_pred CcEEEEEeCCCCcceeEECCCCCEEEEe---CCeEEE-EECCCCcEeeeeeccccCCCceeCCCccEEee-eccCCCcee
Confidence 1 1111111 12468899999997776 688999 9999888766554433 111 111 111111 333333
Q ss_pred --------------------cEEEEcc-cCcee-eecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC-Cceeeec
Q psy682 216 --------------------DVKVHTT-FGDLL-RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHE 272 (330)
Q Consensus 216 --------------------tvkl~~~-~G~ll-~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n-G~~las~ 272 (330)
.|.+|+. +|++. ..+.++.. .+..++|||||+.|+.+ ++.+..|..+ |+.+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV--FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS--CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEE
T ss_pred eeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC--ceeeEEECCCCCEEEEe-CCeEEEEECCCCcCccee
Confidence 3567765 45553 23444544 78899999999998887 6888888875 4555555
Q ss_pred cCc
Q psy682 273 SHN 275 (330)
Q Consensus 273 ~~~ 275 (330)
...
T Consensus 277 ~~~ 279 (337)
T 1pby_B 277 PLP 279 (337)
T ss_dssp ECS
T ss_pred cCC
Confidence 443
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.46 E-value=4.6e-13 Score=136.30 Aligned_cols=244 Identities=6% Similarity=-0.083 Sum_probs=137.7
Q ss_pred CCCcEEEeecccccc--cceeecCCCceeEEEeCCCCCc------C-----------cceeeeecCcc------------
Q psy682 5 DKGIVEVWRTFNLAL--LYAFPSCDSSVRSLALSHDQKY------S-----------PMMFSTVLDDV------------ 53 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~--l~tl~gH~~~V~svafSpdg~~------~-----------~l~~~~~~~d~------------ 53 (330)
.+++|++|++.+|+. +....+|...+.+++|||||+. . .......+...
T Consensus 89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred ceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 358899999998875 4445677778999999999987 0 11111122221
Q ss_pred ------EEEEEeCCCCCeeEeeecccee-----c------cCCcEEEEE------cCCcceEEEeCCCCCCc-ccCCCCC
Q psy682 54 ------CMSLKFPSNSPICHVTANTYVT-----L------HMPSVVTVT------ANHQFAINRWNPDYAAS-IQSPSYA 109 (330)
Q Consensus 54 ------~~~v~Fs~~~~v~~~~~~~~~~-----~------~~~~~v~vS------~~~~~tv~lW~~~~~~~-~~~~~h~ 109 (330)
+..+.|||||+.|++.+..... + ..+.+..+. .+.+.+|++|+.++... .++..+.
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 2679999999988777533200 0 000011111 12345899999987663 4443331
Q ss_pred CC--CCCCCCCccccCCCcee-ccCCCC--CCCcceeccCC-CCccceeee----e----eEEEEecCCCeEEEe-eccC
Q psy682 110 ET--PGSPPGNLPLTLDPILT-HPTSNN--NAPVPKRHLGD-NFSQKLRVR----H----NCFVTTVDSRFLLAC-GFWD 174 (330)
Q Consensus 110 ~~--~~~~~~~l~fs~D~~l~-~~s~~~--~~~~~~~~l~~-~~~~~~~~~----~----~~~~~spDg~~i~as-g~~D 174 (330)
.. ....+..+.||||+++. ..+... ...++.+.+.. ...+.+..+ . ..++|||||+.|+.. +..|
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 00 01234569999999944 321111 11233333321 111111111 1 267899999987664 5566
Q ss_pred C----e--EEEeee-ccccc--cccccc-CCCCcE-E--Ee----HHHHHhhhccCC--CcEEEEcc--cCc-eeeecCC
Q psy682 175 N----S--FREPFT-TMYLA--LQEGKF-DHPNRL-F--SS----ISLAWKNCQRDT--SDVKVHTT--FGD-LLRSLDP 232 (330)
Q Consensus 175 ~----t--irl~w~-~~~g~--l~~~l~-gH~d~V-i--aS----t~~lW~~SgS~D--gtvkl~~~--~G~-ll~tL~~ 232 (330)
+ . |.+ |+ ..+++ ....+. ++.+.+ + .| .+.. +++.| ++++||.. .|. ..+.|.+
T Consensus 329 ~~~~~~~~l~~-~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 329 GGRGKFYHITV-SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF---LSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp SSSSCEEEEEE-ECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE---EESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred CCCcceeEEEE-EeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEE---EEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 6 4 455 66 34444 144555 455543 1 12 2211 45555 89999975 343 5566765
Q ss_pred ---CCCCCCCcEEEeCCCccEEEEc
Q psy682 233 ---PSGFASPESVVMSREGVIVVNY 254 (330)
Q Consensus 233 ---h~~~~~v~~v~fS~dG~~l~s~ 254 (330)
|.. .+..++|||||+.||..
T Consensus 405 ~~~~~~--~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 405 DLVENC--TYFSASFSHSMDFFLLK 427 (723)
T ss_dssp TSSSSC--CCCEEEECTTSSEEEEE
T ss_pred cccCCC--CeEEEEECCCCCEEEEE
Confidence 555 78999999999988765
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.45 E-value=7.1e-13 Score=135.03 Aligned_cols=252 Identities=9% Similarity=0.015 Sum_probs=149.0
Q ss_pred CCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------Ccceeee----------------ecCcc---------
Q psy682 5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------SPMMFST----------------VLDDV--------- 53 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------~~l~~~~----------------~~~d~--------- 53 (330)
.|++|++|++.+|+. ..+..|...+.+++|||||+. ..+.... .+...
T Consensus 99 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 99 TQGGLVGFDMLARKV-TYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp ETTEEEEEETTTTEE-EEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred ECCEEEEEECCCCce-EEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 468999999988764 456678888999999999986 1111111 11111
Q ss_pred -----EEEEEeCCCCCeeEeeeccceecc----------CCcEEE------EEcCCcceEEEeCCCCCCcccCC---CCC
Q psy682 54 -----CMSLKFPSNSPICHVTANTYVTLH----------MPSVVT------VTANHQFAINRWNPDYAASIQSP---SYA 109 (330)
Q Consensus 54 -----~~~v~Fs~~~~v~~~~~~~~~~~~----------~~~~v~------vS~~~~~tv~lW~~~~~~~~~~~---~h~ 109 (330)
+..+.|||||+.|++......... .+.... -..+.+..|++|+.+++...... .|.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 356778888887765542110000 000000 01235678999999876643332 232
Q ss_pred CCCCCCCCCccccCCCc-eeccCCCCCC---CcceeccCCC-Ccccee-ee-------eeEEEEec--CCCeEEEeeccC
Q psy682 110 ETPGSPPGNLPLTLDPI-LTHPTSNNNA---PVPKRHLGDN-FSQKLR-VR-------HNCFVTTV--DSRFLLACGFWD 174 (330)
Q Consensus 110 ~~~~~~~~~l~fs~D~~-l~~~s~~~~~---~~~~~~l~~~-~~~~~~-~~-------~~~~~~sp--Dg~~i~asg~~D 174 (330)
..+..+.|+||++ ++..+.+... .+..+.+... -.+.+. .. ..+++|+| ||+++ +++..|
T Consensus 258 ----~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~ 332 (706)
T 2z3z_A 258 ----KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD 332 (706)
T ss_dssp ----CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT
T ss_pred ----eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC
Confidence 2456799999999 5543322211 2233333211 111111 11 13468999 99975 555689
Q ss_pred CeEEEeeecc-cccccccccCCCCcEE----Ee----HHHHHhhhccCCC--cEEE--EcccCceeeecCCCCCCCCCcE
Q psy682 175 NSFREPFTTM-YLALQEGKFDHPNRLF----SS----ISLAWKNCQRDTS--DVKV--HTTFGDLLRSLDPPSGFASPES 241 (330)
Q Consensus 175 ~tirl~w~~~-~g~l~~~l~gH~d~Vi----aS----t~~lW~~SgS~Dg--tvkl--~~~~G~ll~tL~~h~~~~~v~~ 241 (330)
++++| |..+ +++.+..+.+|...|. .+ .+.. +++.|+ .++| |+..+..++.|. |.. .+.+
T Consensus 333 g~~~l-~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~---~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~--~~~~ 405 (706)
T 2z3z_A 333 GWNHL-YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYF---ESTEASPLERHFYCIDIKGGKTKDLT-PES--GMHR 405 (706)
T ss_dssp SSCEE-EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEE---EESSSCTTCBEEEEEETTCCCCEESC-CSS--SEEE
T ss_pred CccEE-EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEE---EecCCCCceEEEEEEEcCCCCceecc-CCC--ceEE
Confidence 99999 9876 5777777777765552 12 2222 555665 3455 455444466676 445 6899
Q ss_pred EEeCCCccEEEEc-cC----CeEEEEeeCCcee
Q psy682 242 VVMSREGVIVVNY-ER----GHIAAFTMNGNRL 269 (330)
Q Consensus 242 v~fS~dG~~l~s~-~~----~~~~~~s~nG~~l 269 (330)
++|||||+.||.. ++ ..+.+|..++..+
T Consensus 406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~ 438 (706)
T 2z3z_A 406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH 438 (706)
T ss_dssp EEECTTSSEEEEEEECSSCSCEEEEEESSSCEE
T ss_pred EEECCCCCEEEEEecCCCCCcEEEEEECCCCeE
Confidence 9999999988765 22 4599998877653
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.45 E-value=2.6e-13 Score=146.04 Aligned_cols=222 Identities=7% Similarity=-0.073 Sum_probs=146.4
Q ss_pred cccCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCc------Cc----------ceeeee-----------cCcc
Q psy682 2 SGGDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKY------SP----------MMFSTV-----------LDDV 53 (330)
Q Consensus 2 sgs~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~------~~----------l~~~~~-----------~~d~ 53 (330)
+++.|++++||.++. |.....+.+|.. +..++|||||+. .. +....+ +...
T Consensus 219 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~ 297 (1045)
T 1k32_A 219 ITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPS 297 (1045)
T ss_dssp EECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGG
T ss_pred EEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccc
Confidence 456789999998753 666777877774 678899999985 00 000011 2224
Q ss_pred EEEEEeC-CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccC
Q psy682 54 CMSLKFP-SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPT 131 (330)
Q Consensus 54 ~~~v~Fs-~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s 131 (330)
+..+.|| |||+.+ +.++ +..|.+|+.++........|.+ ..+..+.|+ |++ ++.++
T Consensus 298 v~~~~~S~pdG~~l-----------------a~~~-~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~s-dg~~l~~~s 355 (1045)
T 1k32_A 298 KFAEDFSPLDGDLI-----------------AFVS-RGQAFIQDVSGTYVLKVPEPLR---IRYVRRGGD-TKVAFIHGT 355 (1045)
T ss_dssp GGEEEEEECGGGCE-----------------EEEE-TTEEEEECTTSSBEEECSCCSC---EEEEEECSS-SEEEEEEEE
T ss_pred cceeeecCCCCCEE-----------------EEEE-cCEEEEEcCCCCceEEccCCCc---ceEEeeeEc-CCCeEEEEE
Confidence 6667777 777764 2222 5678999998777666656642 145678999 998 44322
Q ss_pred CCCCCCcc-eeccCCCCccceee---eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-
Q psy682 132 SNNNAPVP-KRHLGDNFSQKLRV---RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS- 202 (330)
Q Consensus 132 ~~~~~~~~-~~~l~~~~~~~~~~---~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS- 202 (330)
. ...++ .+.+...-...+.. ...+++|||||++|+ +++.|++|++ |++++|++...+.+|...| ++.
T Consensus 356 ~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la-~~~~~~~v~~-~d~~tg~~~~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 356 R--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV-VANDRFEIMT-VDLETGKPTVIERSREAMITDFTISDN 431 (1045)
T ss_dssp T--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE-EEETTSEEEE-EETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred C--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEE-EECCCCeEEE-EECCCCceEEeccCCCCCccceEECCC
Confidence 2 33344 33432211112222 235788999999955 4557999999 9999998887776887664 222
Q ss_pred -HHHHHhhhccC----------CCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682 203 -ISLAWKNCQRD----------TSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 203 -t~~lW~~SgS~----------Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
...+ +++. +++|++|+..+..++.|.+|.. .+..++|||||+.|+.++
T Consensus 432 G~~la---~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~--~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 432 SRFIA---YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS--HDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp SCEEE---EEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS--BEEEEEECTTSCEEEEEE
T ss_pred CCeEE---EEecCccccccCCCCCeEEEEECCCCcEEEeeCCCc--ccCCceEcCCCCEEEEEe
Confidence 2222 2222 3599999886555889999877 889999999999988874
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.44 E-value=1.6e-12 Score=118.83 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=135.4
Q ss_pred CcccCCCcEEEeecccccccceeecCC-CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
++++.|++|++||+.+|+.+.++..+. ..+.+++|+|||+.
T Consensus 15 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-------------------------------------- 56 (349)
T 1jmx_B 15 IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT-------------------------------------- 56 (349)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE--------------------------------------
T ss_pred EEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCE--------------------------------------
Confidence 467789999999999999888887654 25678888888765
Q ss_pred cEEEEEcCCcceEEEeCCCCCCccc-CC-CCCC-CCCCCCCCccccCCCc-eeccCCC----------CCCCcceeccCC
Q psy682 80 SVVTVTANHQFAINRWNPDYAASIQ-SP-SYAE-TPGSPPGNLPLTLDPI-LTHPTSN----------NNAPVPKRHLGD 145 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~~~~-~~-~h~~-~~~~~~~~l~fs~D~~-l~~~s~~----------~~~~~~~~~l~~ 145 (330)
+.++...+..|.+|+.+...... .. ++.. .....+..+.|+||++ +++++.+ ....+..+.+..
T Consensus 57 --~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 57 --AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred --EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 23555667789999987654332 22 2200 0001256899999998 4442211 012333333321
Q ss_pred -CCcc---ceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC-C-------------------cE
Q psy682 146 -NFSQ---KLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-N-------------------RL 199 (330)
Q Consensus 146 -~~~~---~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-d-------------------~V 199 (330)
...+ .+.. ...+++++|||+ +++++ +.|++ |+..+++++..+..+. + ..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~---~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (349)
T 1jmx_B 135 GLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG---PDIYK-MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 209 (349)
T ss_dssp GGGBCCSEEEECCSSCCCEEECTTSC-EEEES---SSEEE-ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred ccccceeeeccCCCcccceeECCCCc-EEEcc---CcEEE-EeCCCCceeccccccccCCccccCccceeeecCCCccee
Confidence 0001 1111 124778999999 67753 34999 9998888766554332 0 00
Q ss_pred EE-------e------------------------HHHHHhh----------hccC---------CCcEEEEcc-cCceee
Q psy682 200 FS-------S------------------------ISLAWKN----------CQRD---------TSDVKVHTT-FGDLLR 228 (330)
Q Consensus 200 ia-------S------------------------t~~lW~~----------SgS~---------Dgtvkl~~~-~G~ll~ 228 (330)
+. + ++..|.. +-|. +++|.+|+. +|++++
T Consensus 210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEE
T ss_pred EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeEEE
Confidence 00 0 0000000 0112 568999975 688888
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-Cceeeecc
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES 273 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~ 273 (330)
++..+ . .+..++|||||+.|+.+ .++.+..|..+ |+.+....
T Consensus 290 ~~~~~-~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 290 AANLD-H--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEECS-S--CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEcCC-C--CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 88643 2 58899999999866655 57889999874 45555443
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.43 E-value=1.4e-13 Score=135.28 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=80.8
Q ss_pred eeEEEEecC-CCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---e---HHHHHhhhccCCCcEEEEcccCcee
Q psy682 155 HNCFVTTVD-SRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---S---ISLAWKNCQRDTSDVKVHTTFGDLL 227 (330)
Q Consensus 155 ~~~~~~spD-g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---S---t~~lW~~SgS~Dgtvkl~~~~G~ll 227 (330)
..+++|+|+ +++ +++++.|++||+ |++.+++......+|.+.|.. + ...+ +|+.||+|++|+.+|+..
T Consensus 152 V~~v~~~p~~~~~-las~s~Dg~v~i-wD~~~~~~~~~~~~~~~~v~~v~wspdg~~la---sgs~dg~v~iwd~~~~~~ 226 (434)
T 2oit_A 152 VIDMKWNPTVPSM-VAVCLADGSIAV-LQVTETVKVCATLPSTVAVTSVCWSPKGKQLA---VGKQNGTVVQYLPTLQEK 226 (434)
T ss_dssp EEEEEECSSCTTE-EEEEETTSCEEE-EEESSSEEEEEEECGGGCEEEEEECTTSSCEE---EEETTSCEEEECTTCCEE
T ss_pred eEEEEECCCCCCE-EEEEECCCeEEE-EEcCCCcceeeccCCCCceeEEEEcCCCCEEE---EEcCCCcEEEEccCCccc
Confidence 368889998 555 777779999999 999888776667788877721 2 3333 899999999999889888
Q ss_pred eecCCCCCC-----CCCcEEEeCCCccEEEEcc--CC------eEEEEeeC
Q psy682 228 RSLDPPSGF-----ASPESVVMSREGVIVVNYE--RG------HIAAFTMN 265 (330)
Q Consensus 228 ~tL~~h~~~-----~~v~~v~fS~dG~~l~s~~--~~------~~~~~s~n 265 (330)
+++..|... ..|.+|+|++++.++++++ +| .++.|.+.
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 888776432 1689999999999997763 32 26677654
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.43 E-value=9.5e-14 Score=144.04 Aligned_cols=225 Identities=10% Similarity=0.012 Sum_probs=131.1
Q ss_pred CCcEEEeecccccccceeecCCCceeE-----EEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682 6 KGIVEVWRTFNLALLYAFPSCDSSVRS-----LALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS 80 (330)
Q Consensus 6 d~~V~lW~~~~g~~l~tl~gH~~~V~s-----vafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~ 80 (330)
||+|++|++.+|+....+.+|...++. ++|||||+. |+++.+......
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~------------------------l~~~~~~~~~~r--- 87 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF------------------------ILLEYNYVKQWR--- 87 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSE------------------------EEEEEEEEECSS---
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCE------------------------EEEEECCeeeEE---
Confidence 899999999999988888999866444 444666655 322211000000
Q ss_pred EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCcc----------
Q psy682 81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQ---------- 149 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~---------- 149 (330)
-+....+.+|+..++...++.+|.+ .....+|||||+ ++.. .+ ..+..+.+.+.-..
T Consensus 88 -----~~~~~~~~~~d~~~~~~~~l~~~~~----~~~~~~~SPdG~~la~~-~~--~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 88 -----HSYTASYDIYDLNKRQLITEERIPN----NTQWVTWSPVGHKLAYV-WN--NDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp -----SCEEEEEEEEETTTTEECCSSCCCT----TEEEEEECSSTTCEEEE-ET--TEEEEESSTTSCCEECCSCCBTTT
T ss_pred -----EccceEEEEEECCCCcEEEcccCCC----cceeeEECCCCCEEEEE-EC--CeEEEEECCCCceEEEcCCCCccc
Confidence 0112446799998888777766653 567899999999 5532 22 22323322110000
Q ss_pred ceee------------eeeEEEEecCCCeEEEeeccCC------------------------------------eEEEee
Q psy682 150 KLRV------------RHNCFVTTVDSRFLLACGFWDN------------------------------------SFREPF 181 (330)
Q Consensus 150 ~~~~------------~~~~~~~spDg~~i~asg~~D~------------------------------------tirl~w 181 (330)
.+.+ ....+++||||++|+... .|. +|++ |
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~-~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v-~ 233 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ-FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV-V 233 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE-EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE-E
T ss_pred eecCcccccccchhcCCCcceEECCCCCEEEEEE-EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE-E
Confidence 0111 112478999999955543 232 4677 8
Q ss_pred eccc---c---ccccccc-----CCCCcE----EEe--H-HHHHhhhccCCCcEEEEcc-cCc------eeeec--CCCC
Q psy682 182 TTMY---L---ALQEGKF-----DHPNRL----FSS--I-SLAWKNCQRDTSDVKVHTT-FGD------LLRSL--DPPS 234 (330)
Q Consensus 182 ~~~~---g---~l~~~l~-----gH~d~V----iaS--t-~~lW~~SgS~Dgtvkl~~~-~G~------ll~tL--~~h~ 234 (330)
++++ | +..+... +|...+ +++ . +..|...++.+.+|++|+. +|+ .+++| ++|.
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 8877 6 3332222 355544 222 1 1122224556678888876 565 23444 5666
Q ss_pred CCCCCc-----EEEeCCCccEEE-Ecc----CCeEEEEeeCCceeeecc
Q psy682 235 GFASPE-----SVVMSREGVIVV-NYE----RGHIAAFTMNGNRLRHES 273 (330)
Q Consensus 235 ~~~~v~-----~v~fS~dG~~l~-s~~----~~~~~~~s~nG~~las~~ 273 (330)
+ .|. .++|||||+.++ ..+ ...|..|+.+|.....+.
T Consensus 314 ~--~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 314 G--WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp S--CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred c--eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 6 555 899999999877 553 235778888887666555
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.42 E-value=3.1e-13 Score=135.19 Aligned_cols=171 Identities=9% Similarity=-0.059 Sum_probs=107.3
Q ss_pred CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCC--CCCCC--cceecc--CCCCcc--ceeeeeeEEE
Q psy682 88 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTS--NNNAP--VPKRHL--GDNFSQ--KLRVRHNCFV 159 (330)
Q Consensus 88 ~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~--~~~~~--~~~~~l--~~~~~~--~~~~~~~~~~ 159 (330)
.++++++|+.+++..+++..|.. ..+..+.|||| +++..+. +++.. ++...+ .+...+ .... ....+
T Consensus 42 ~~g~~~lw~~~~g~~~~lt~~~~---~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~-~~~~~ 116 (582)
T 3o4h_A 42 SEGSVNAYLYDGGETVKLNREPI---NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP-MRILS 116 (582)
T ss_dssp ETTEEEEEEEETTEEEECCSSCC---SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS-BEEEE
T ss_pred cCCceeEEEEcCCCcEeeecccc---cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCC-ceeee
Confidence 48889999998888777776541 24667899999 7443222 12221 222332 111100 0111 23567
Q ss_pred EecCCCe-EEEeeccCCeEEEeeecccccccccccCCCCcE-EEe--HHHHHhhhccCC----CcEEEEcccCceeeecC
Q psy682 160 TTVDSRF-LLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-FSS--ISLAWKNCQRDT----SDVKVHTTFGDLLRSLD 231 (330)
Q Consensus 160 ~spDg~~-i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-iaS--t~~lW~~SgS~D----gtvkl~~~~G~ll~tL~ 231 (330)
++|||+. +++++..|+. .+ |++++|++.+...++...+ ++. ..++ +++.| ++|.+|+..+..++.|.
T Consensus 117 ~s~dg~~~~~~s~~~~~~-~l-~d~~~g~~~~l~~~~~~~~~~spDG~~la---~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 117 GVDTGEAVVFTGATEDRV-AL-YALDGGGLRELARLPGFGFVSDIRGDLIA---GLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp EEECSSCEEEEEECSSCE-EE-EEEETTEEEEEEEESSCEEEEEEETTEEE---EEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred eCCCCCeEEEEecCCCCc-eE-EEccCCcEEEeecCCCceEEECCCCCEEE---EEEEcCCCCeEEEEEcCCCCCceEee
Confidence 8999975 4566655554 48 9999888765554443223 222 2222 45555 77889987655567899
Q ss_pred CCCCCCCCcEEEeCCCccEEEEcc-CC--eEEEEeeCCceee
Q psy682 232 PPSGFASPESVVMSREGVIVVNYE-RG--HIAAFTMNGNRLR 270 (330)
Q Consensus 232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~--~~~~~s~nG~~la 270 (330)
+|.+ .+..++|||||+.|++++ ++ .|..|..++..+.
T Consensus 192 ~~~~--~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 192 SGEG--SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CSSC--EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred cCCC--ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9888 899999999999999764 44 6888777765544
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.41 E-value=5.1e-13 Score=131.19 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=91.7
Q ss_pred eeEEEEecCCCeEEE---eeccCCeEEEeeecccc-----cc------cccccCCCCcEE--E--e---HHHHHhhhccC
Q psy682 155 HNCFVTTVDSRFLLA---CGFWDNSFREPFTTMYL-----AL------QEGKFDHPNRLF--S--S---ISLAWKNCQRD 213 (330)
Q Consensus 155 ~~~~~~spDg~~i~a---sg~~D~tirl~w~~~~g-----~l------~~~l~gH~d~Vi--a--S---t~~lW~~SgS~ 213 (330)
..+++|+|||++|++ +|+.|++||+ |++.++ +. +..+.+|.+.|. + . ...+ +||.
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la---s~s~ 170 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAF-FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA---VCLA 170 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEE-EEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE---EEET
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEE-EEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE---EEEC
Confidence 468889999999765 7889999999 999766 11 466778988882 1 1 2334 8999
Q ss_pred CCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeeccC
Q psy682 214 TSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHESH 274 (330)
Q Consensus 214 Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~~ 274 (330)
||+|+||+. +++.+....+|.. .|.+++|||||+.||+|+ +++++.|.++|+.......
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~--~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~ 231 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTV--AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPC 231 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGG--CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECC
T ss_pred CCeEEEEEcCCCcceeeccCCCC--ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccC
Confidence 999999976 5777777778887 899999999999999995 8899999999877766543
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.38 E-value=7.7e-12 Score=117.03 Aligned_cols=253 Identities=8% Similarity=-0.104 Sum_probs=137.4
Q ss_pred CC--cEEEeecccccccceeecCCCceeEEEeCCCCCc-------Ccceee-----------eecCccE--EEEEeCCCC
Q psy682 6 KG--IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFS-----------TVLDDVC--MSLKFPSNS 63 (330)
Q Consensus 6 d~--~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~-----------~~~~d~~--~~v~Fs~~~ 63 (330)
+| .|.+|++.+|+......+|...+.+++|||||+. ..+... ..+...+ ....++||+
T Consensus 57 ~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg 136 (388)
T 3pe7_A 57 DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC 136 (388)
T ss_dssp TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS
T ss_pred CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC
Confidence 55 4778888888888878888888888999999987 001110 1111111 112235666
Q ss_pred CeeEeeeccceeccCCc-----EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCc-eeccCCCC--
Q psy682 64 PICHVTANTYVTLHMPS-----VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNN-- 134 (330)
Q Consensus 64 ~v~~~~~~~~~~~~~~~-----~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~-- 134 (330)
..++..........+.. ....+.+.+..|.+|+..++.......+.. ....+.|+| |++ ++..+.+.
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~~~~~~sp~dg~~l~~~~~~~~~ 212 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ----WLGHPIYRPYDDSTVAFCHEGPHD 212 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS----CEEEEEEETTEEEEEEEEECSCTT
T ss_pred CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc----cccccEECCCCCCEEEEEEecCCC
Confidence 65432110000000000 000123445778999988777666554432 356789999 998 54433322
Q ss_pred --CCCcceeccCCCCccceee-----eeeEEEEecCCCeEEEeeccCC----eEEEeeecccccc--cccccC-------
Q psy682 135 --NAPVPKRHLGDNFSQKLRV-----RHNCFVTTVDSRFLLACGFWDN----SFREPFTTMYLAL--QEGKFD------- 194 (330)
Q Consensus 135 --~~~~~~~~l~~~~~~~~~~-----~~~~~~~spDg~~i~asg~~D~----tirl~w~~~~g~l--~~~l~g------- 194 (330)
...++...+.+.-.+.+.. .....+|||||+.|+..+..++ .|.+ |++++|+. +..+.+
T Consensus 213 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~-~d~~~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 213 LVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS-ADPETLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp TSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE-ECTTTCCEEEEEEECCEEEEEEC
T ss_pred CCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE-EecCCCceEEEEcCCCceeeeec
Confidence 2234444332211111211 2235679999998655544332 3888 99988874 223333
Q ss_pred CCCcEEEe--HHHHHhh------hccCCCcEEEEcccCceeeecCCCCCC---------CCCcEEEeCCCccEEEEcc--
Q psy682 195 HPNRLFSS--ISLAWKN------CQRDTSDVKVHTTFGDLLRSLDPPSGF---------ASPESVVMSREGVIVVNYE-- 255 (330)
Q Consensus 195 H~d~ViaS--t~~lW~~------SgS~Dgtvkl~~~~G~ll~tL~~h~~~---------~~v~~v~fS~dG~~l~s~~-- 255 (330)
+....++. ..++... ++..+..|.+|+..+..++.|..|... ..+..++|||||+.|+..+
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 22222333 1111111 125677899999876666777766441 0378899999999888764
Q ss_pred CCeEEEEe
Q psy682 256 RGHIAAFT 263 (330)
Q Consensus 256 ~~~~~~~s 263 (330)
.+...+|.
T Consensus 372 ~g~~~l~~ 379 (388)
T 3pe7_A 372 HGKPALYL 379 (388)
T ss_dssp TSSCEEEE
T ss_pred CCceeEEE
Confidence 34444444
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.36 E-value=1.7e-11 Score=115.78 Aligned_cols=253 Identities=10% Similarity=0.011 Sum_probs=147.9
Q ss_pred CcEEEeecc--cccccc--eee-cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee------cccee
Q psy682 7 GIVEVWRTF--NLALLY--AFP-SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA------NTYVT 75 (330)
Q Consensus 7 ~~V~lW~~~--~g~~l~--tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~------~~~~~ 75 (330)
+.|.+|+++ +|++.. ... ++...+..++|||||++ ......+.+..+...+++++..+.. ...+.
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~----l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~ 89 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKN----IYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRAND 89 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSE----EEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCE----EEEEccceEEEEEECCCCCEEEeeEeecCCCCccEE
Confidence 568888763 555422 221 34557889999999986 2232333444444444666554321 22356
Q ss_pred ccCCcE--EEEEcC-------------CcceEEEeCCCC-CCcc-cCCC--CCCCCCCCCCCccccCCCc-eeccCCCCC
Q psy682 76 LHMPSV--VTVTAN-------------HQFAINRWNPDY-AASI-QSPS--YAETPGSPPGNLPLTLDPI-LTHPTSNNN 135 (330)
Q Consensus 76 ~~~~~~--v~vS~~-------------~~~tv~lW~~~~-~~~~-~~~~--h~~~~~~~~~~l~fs~D~~-l~~~s~~~~ 135 (330)
+++++. ++++++ .++++++|+.+. +.+. .... |. ....+..+.|+|||+ +.+ +..++
T Consensus 90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~spdG~~l~~-~~~~~ 166 (365)
T 1jof_A 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ--ENTGIHGMVFDPTETYLYS-ADLTA 166 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC--TTCCEEEEEECTTSSEEEE-EETTT
T ss_pred ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC--CCCcceEEEECCCCCEEEE-EcCCC
Confidence 777776 455665 688899999863 2222 1111 11 123566899999998 443 22223
Q ss_pred CCcceeccC--CCCc--ccee-----eeeeEEEEecCCCeEEEeeccCCeEEEeeecc--ccccc------ccc----cC
Q psy682 136 APVPKRHLG--DNFS--QKLR-----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTM--YLALQ------EGK----FD 194 (330)
Q Consensus 136 ~~~~~~~l~--~~~~--~~~~-----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l~------~~l----~g 194 (330)
..+..+.+. +.+. ..+. .....++|+|||+++++++..++++++ |+.+ +|++. ..+ .+
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v-~~~~~~~g~~~~~~~~~~~~~~~~~g 245 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE-YVIDPATHMPVYTHHSFPLIPPGIPD 245 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE-EEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE-EEEeCCCCcEEEccceEEcCCCCcCC
Confidence 344444442 1111 1111 113568899999998888777899999 8764 56642 222 23
Q ss_pred CCC------cE---E-Ee--HHHHHhhhccC-C----CcEEEEcc--cCceee---ecCCCCCCCCCcEEEeCC---Ccc
Q psy682 195 HPN------RL---F-SS--ISLAWKNCQRD-T----SDVKVHTT--FGDLLR---SLDPPSGFASPESVVMSR---EGV 249 (330)
Q Consensus 195 H~d------~V---i-aS--t~~lW~~SgS~-D----gtvkl~~~--~G~ll~---tL~~h~~~~~v~~v~fS~---dG~ 249 (330)
|.. .+ . .| --.|+- +... | ++|.+|+. +|++.+ .+..+.. .+..++||| ||+
T Consensus 246 ~~~~~~~~~~~~~i~~~spdG~~l~v-~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 246 RDPETGKGLYRADVCALTFSGKYMFA-SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDE 322 (365)
T ss_dssp BCTTTSSBSEEEEEEEECTTSSEEEE-EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTT
T ss_pred cccccccccccccEEEECCCCCEEEE-ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCC
Confidence 332 12 2 33 111221 2222 2 28999975 688665 2333444 688999999 899
Q ss_pred EEEEcc--CCeEEEEeeCCceee
Q psy682 250 IVVNYE--RGHIAAFTMNGNRLR 270 (330)
Q Consensus 250 ~l~s~~--~~~~~~~s~nG~~la 270 (330)
.|+.++ ++.+.+|..++..|.
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~~l~ 345 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp EEEEECSSSCEEEEEEEETTEEE
T ss_pred EEEEEEcCCCeEEEEEEchhhCc
Confidence 998874 578999999987654
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.35 E-value=5.1e-12 Score=117.14 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=125.1
Q ss_pred ccCCCcEEEeecc--cccccc-eeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 3 GGDKGIVEVWRTF--NLALLY-AFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 3 gs~d~~V~lW~~~--~g~~l~-tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
++.++.|.+|.++ +|++.. ....+......++|||||++
T Consensus 12 ~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l-------------------------------------- 53 (347)
T 3hfq_A 12 KKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCL-------------------------------------- 53 (347)
T ss_dssp SSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEE--------------------------------------
T ss_pred CCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeE--------------------------------------
Confidence 4567788888875 344332 33455566667777777664
Q ss_pred cEEEEEc-CCcceEEEeCCCCCCcccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--CCCcc--c
Q psy682 80 SVVTVTA-NHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG--DNFSQ--K 150 (330)
Q Consensus 80 ~~v~vS~-~~~~tv~lW~~~~~~~~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~--~~~~~--~ 150 (330)
+.++. +.+++|.+|+.+++..... ..+. ..+..++|+||++ +.+++. .+..+..+.+. +.+.. .
T Consensus 54 --~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~----~~p~~~a~spdg~~l~~~~~-~~~~v~v~~~~~~g~~~~~~~ 126 (347)
T 3hfq_A 54 --YSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG----TPPAYVAVDEARQLVYSANY-HKGTAEVMKIAADGALTLTDT 126 (347)
T ss_dssp --EEEEEETTEEEEEEEEEETTEEEEEEEEEEES----CCCSEEEEETTTTEEEEEET-TTTEEEEEEECTTSCEEEEEE
T ss_pred --EEEEecCCCceEEEEEecCCcEEEeeeeecCC----CCCEEEEECCCCCEEEEEeC-CCCEEEEEEeCCCCCeeecce
Confidence 12222 4577899999865543222 2333 3567899999998 554321 22223333332 11110 0
Q ss_pred eee------------eeeEEEEecCCCeEEEeeccCCeEEEeeecc-ccccccc--ccCCCC-c---E-EEe--H-HHHH
Q psy682 151 LRV------------RHNCFVTTVDSRFLLACGFWDNSFREPFTTM-YLALQEG--KFDHPN-R---L-FSS--I-SLAW 207 (330)
Q Consensus 151 ~~~------------~~~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l~~~--l~gH~d-~---V-iaS--t-~~lW 207 (330)
+.. +..+++++|||+ ++++++.+++|++ |+++ +|++... +..+.. . + +.. . +.+
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~-~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v- 203 (347)
T 3hfq_A 127 VQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYV-YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL- 203 (347)
T ss_dssp EECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEE-EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE-
T ss_pred eecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEE-EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE-
Confidence 100 134689999999 7888888999999 9997 5654321 111111 1 1 222 1 222
Q ss_pred hhhccCCCcEEEEccc---Cce--eeecCCCCC----CCCCcEEEeCCCccEE-EEc-cCCeEEEEeeC
Q psy682 208 KNCQRDTSDVKVHTTF---GDL--LRSLDPPSG----FASPESVVMSREGVIV-VNY-ERGHIAAFTMN 265 (330)
Q Consensus 208 ~~SgS~Dgtvkl~~~~---G~l--l~tL~~h~~----~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s~n 265 (330)
++..+++|.+|+.+ |++ +..+..... ...+..++|||||+.| ++. .++.+..|.++
T Consensus 204 --~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 204 --AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp --EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred --EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 56778999999754 554 333332221 0258899999999976 444 47889999876
No 159
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.34 E-value=1.4e-11 Score=124.40 Aligned_cols=251 Identities=8% Similarity=-0.107 Sum_probs=143.3
Q ss_pred cCCCcEEEeecccccccceeecCCCcee---------EEEeC--CCCCc--C-------ccee-------------eee-
Q psy682 4 GDKGIVEVWRTFNLALLYAFPSCDSSVR---------SLALS--HDQKY--S-------PMMF-------------STV- 49 (330)
Q Consensus 4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~---------svafS--pdg~~--~-------~l~~-------------~~~- 49 (330)
+.++..+||....+.....+..|...|. +.+++ |||+. . -+.. ++.
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~ 123 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV 123 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC
T ss_pred ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC
Confidence 5688999999655666777888887776 66555 88875 0 0100 111
Q ss_pred ----cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC------CCcccCC-CCCCCCCCCCCC
Q psy682 50 ----LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY------AASIQSP-SYAETPGSPPGN 118 (330)
Q Consensus 50 ----~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~------~~~~~~~-~h~~~~~~~~~~ 118 (330)
+...+..+.|||||+.|+........- . ..+...+|.+|+.++ +....+. .+. ..+..
T Consensus 124 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 192 (662)
T 3azo_A 124 SAVGGGLRWADPVLLPERGEVWCMAEEFTGE-G------PSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTG 192 (662)
T ss_dssp CCSTTCEEEEEEEEETTTTEEEEEEEEECSS-S------TTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECC
T ss_pred ccCCCCccccCcEECCCCCEEEEEEecccCC-C------CCCceeEEEEEECCCCccccCCceeEEEecCC----CcccC
Confidence 233456677777777653332210000 0 002236799999988 6666655 443 34567
Q ss_pred ccccCCCc-eeccCCCCC------CCcceeccCC-C---Cccceee----eeeEEEEecCCCeEEEeeccCCeEEE-eee
Q psy682 119 LPLTLDPI-LTHPTSNNN------APVPKRHLGD-N---FSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFRE-PFT 182 (330)
Q Consensus 119 l~fs~D~~-l~~~s~~~~------~~~~~~~l~~-~---~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl-~w~ 182 (330)
+.|||||+ ++..+.+.. ..++.+.+.+ . -...+.. ....++|+|||++ +.++..|++.+| -|+
T Consensus 193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l-~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL-IVATDRTGWWNLHRVD 271 (662)
T ss_dssp CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE-EEEECTTSSCEEEEEC
T ss_pred ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE-EEEECCCCCeEEEEEE
Confidence 89999999 554332321 2234444431 1 1112221 1246789999995 666667885555 155
Q ss_pred cccccccccccCCCCc-----------E-EEe--HHHHHhhhccCCCcEEEE--cccCceeeecCCCCCCCCCcEE-EeC
Q psy682 183 TMYLALQEGKFDHPNR-----------L-FSS--ISLAWKNCQRDTSDVKVH--TTFGDLLRSLDPPSGFASPESV-VMS 245 (330)
Q Consensus 183 ~~~g~l~~~l~gH~d~-----------V-iaS--t~~lW~~SgS~Dgtvkl~--~~~G~ll~tL~~h~~~~~v~~v-~fS 245 (330)
+++|++.+...+|.+. + +.. .+.+ +++. ++++|| +.+|..+++|..|.+ .+..+ +++
T Consensus 272 ~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~s~~ 345 (662)
T 3azo_A 272 PATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV---VHGK-GAAVLGILDPESGELVDAAGPWT--EWAATLTVS 345 (662)
T ss_dssp TTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE---EEBS-SSCEEEEEETTTTEEEECCSSCC--EEEEEEEEE
T ss_pred CCCCceeecccccccccCccccccCceEeEeCCCEEEE---EEEc-CccEEEEEECCCCcEEEecCCCC--eEEEEEecC
Confidence 5567765555444332 1 111 2222 5677 999999 555666899998877 77777 555
Q ss_pred CCccEEEEccCC---eEEEEeeCCceeeec
Q psy682 246 REGVIVVNYERG---HIAAFTMNGNRLRHE 272 (330)
Q Consensus 246 ~dG~~l~s~~~~---~~~~~s~nG~~las~ 272 (330)
+++..+++++.. .+..+..++..+..+
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp TTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 555555555433 355555555555444
No 160
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=3.6e-11 Score=109.52 Aligned_cols=218 Identities=15% Similarity=0.063 Sum_probs=135.2
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV 81 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~ 81 (330)
++..++.|..|+..++ ...+..+...+.+++|+|||++
T Consensus 45 ~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l---------------------------------------- 82 (296)
T 3e5z_A 45 SDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHL---------------------------------------- 82 (296)
T ss_dssp EEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCE----------------------------------------
T ss_pred EeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcE----------------------------------------
Confidence 3456678888888654 6667777777777777777766
Q ss_pred EEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCC--C--------------CCCCcceeccC
Q psy682 82 VTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTS--N--------------NNAPVPKRHLG 144 (330)
Q Consensus 82 v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~--~--------------~~~~~~~~~l~ 144 (330)
.|+...+..|.+|+++.+...... .........++.+.+.+||.+....+ + ....+++....
T Consensus 83 -~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 83 -IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp -EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred -EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 244455567888888544433322 11111123456799999998443100 0 01123333321
Q ss_pred CCCcccee---eeeeEEEEecCCCeEEEeeccCCeEEEeeecc-cccc---cccc---cCCCCcEEE-eHHHHHhhhccC
Q psy682 145 DNFSQKLR---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTM-YLAL---QEGK---FDHPNRLFS-SISLAWKNCQRD 213 (330)
Q Consensus 145 ~~~~~~~~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l---~~~l---~gH~d~Via-St~~lW~~SgS~ 213 (330)
+.+. .+. ...+.++++|||+.+ ++.+.++.|++ |+++ +|++ .+.+ .+..+.+.. +.=.+|- +.
T Consensus 162 g~~~-~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~-~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-- 235 (296)
T 3e5z_A 162 GTLS-APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHR-YCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-- 235 (296)
T ss_dssp SCEE-EEECCCSSEEEEEECTTSCEE-EEETTTTEEEE-EEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE--
T ss_pred CCEE-EeecCCCCCccEEECCCCCEE-EEeCCCCeEEE-EEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec--
Confidence 1111 111 113578899999997 77778899999 9985 4555 2222 223333422 2223453 33
Q ss_pred CCcEEEEcccCceeeecCCCCCCCCCcEEEe-CCCccEEEEccCCeEEEEeeCCceeee
Q psy682 214 TSDVKVHTTFGDLLRSLDPPSGFASPESVVM-SREGVIVVNYERGHIAAFTMNGNRLRH 271 (330)
Q Consensus 214 Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~f-S~dG~~l~s~~~~~~~~~s~nG~~las 271 (330)
++.|.+|+.+|++++.+..|.. |.+++| +|||+.|..++.+.+..+.++.+.|..
T Consensus 236 ~~~v~~~~~~g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH 291 (296)
T ss_dssp TTEEEEECTTSCEEEEEECSSC---CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred CCeEEEECCCCCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence 7889999999999999987644 899999 699998888777777777776665543
No 161
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.27 E-value=1.7e-10 Score=104.59 Aligned_cols=218 Identities=12% Similarity=-0.029 Sum_probs=118.9
Q ss_pred cccCCCcEEEeecccccccceeec-C----CCceeEEEeCCCCCcCcceeee-e----------cCccEEEEEeCCCCCe
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPS-C----DSSVRSLALSHDQKYSPMMFST-V----------LDDVCMSLKFPSNSPI 65 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~g-H----~~~V~svafSpdg~~~~l~~~~-~----------~~d~~~~v~Fs~~~~v 65 (330)
+++.++.|.+|++.+|+.+.++.. + ...+.+++|+|||+. +.+.. + .+..+..+... .++.
T Consensus 51 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~ 127 (337)
T 1pby_B 51 TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT--LAIYESPVRLELTHFEVQPTRVALYDAE-TLSR 127 (337)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEETT-TTEE
T ss_pred EeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE--EEEEecccccccccccccCceEEEEECC-CCcE
Confidence 456688999999999998877763 2 336889999999976 11110 0 12333333221 1222
Q ss_pred eE-eee---ccceeccCCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCC---
Q psy682 66 CH-VTA---NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP--- 137 (330)
Q Consensus 66 ~~-~~~---~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~--- 137 (330)
+. +.. ...+.+++++..++.+ +..|.+|+........ ...+. ....+.|+||++.+..+......
T Consensus 128 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 128 RKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS-----WEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp EEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT-----TTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred EEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc-----cCCCceeCCCccEEeeeccCCCceee
Confidence 11 111 1113344444322333 3568999987655332 22221 12346889999833211111110
Q ss_pred --------------------cceeccCCCCccceee-----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682 138 --------------------VPKRHLGDNFSQKLRV-----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK 192 (330)
Q Consensus 138 --------------------~~~~~l~~~~~~~~~~-----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l 192 (330)
+..+.+...-...+.. ...+++|+|||++++++ |+.|++ |++++++++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~-~d~~~~~~~~~~ 276 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLES-FDLEKNASIKRV 276 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEE-EETTTTEEEEEE
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEE-EECCCCcCccee
Confidence 1112211100000111 12357788888886665 688888 888765554322
Q ss_pred cCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEee-CCceee
Q psy682 193 FDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM-NGNRLR 270 (330)
Q Consensus 193 ~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~-nG~~la 270 (330)
..+ . .+.+++|+|||+.|+.+ .++.+..|.. .|+.++
T Consensus 277 --------------------------------------~~~-~--~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 277 --------------------------------------PLP-H--SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp --------------------------------------ECS-S--CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred --------------------------------------cCC-C--ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 111 1 67899999999977666 5788999986 466666
Q ss_pred eccC
Q psy682 271 HESH 274 (330)
Q Consensus 271 s~~~ 274 (330)
....
T Consensus 316 ~~~~ 319 (337)
T 1pby_B 316 QVDL 319 (337)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
No 162
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.26 E-value=5.4e-11 Score=108.15 Aligned_cols=228 Identities=15% Similarity=0.110 Sum_probs=124.4
Q ss_pred CCCcEEEeecc--ccc--ccceeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCC---eeEe-ee---cc
Q psy682 5 DKGIVEVWRTF--NLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSP---ICHV-TA---NT 72 (330)
Q Consensus 5 ~d~~V~lW~~~--~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~---v~~~-~~---~~ 72 (330)
.++.|++|++. +|+ .+..+..+. .+.+++|+|||+. .+.... +..+..+... ++. .+.. .. ..
T Consensus 58 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~---l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~ 132 (343)
T 1ri6_A 58 PEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQF---VFVGSYNAGNVSVTRLE-DGLPVGVVDVVEGLDGCH 132 (343)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSE---EEEEETTTTEEEEEEEE-TTEEEEEEEEECCCTTBC
T ss_pred CCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCE---EEEEecCCCeEEEEECC-CCccccccccccCCCCce
Confidence 34999999997 554 445666655 8899999999986 122222 1223222222 211 1100 00 11
Q ss_pred ceeccCCcE-EEEEcCCcceEEEeCCCC-CCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC
Q psy682 73 YVTLHMPSV-VTVTANHQFAINRWNPDY-AASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG 144 (330)
Q Consensus 73 ~~~~~~~~~-v~vS~~~~~tv~lW~~~~-~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~ 144 (330)
.+.+.+++. +.++...++.|++|+.+. +.+. ....+. ...+..+.|+||++ +.+ +...+..+..+.+.
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pdg~~l~~-~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHMVFHPNEQYAYC-VNELNSSVDVWELK 208 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST---TCCEEEEEECTTSSEEEE-EETTTTEEEEEESS
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC---CCCcceEEECCCCCEEEE-EeCCCCEEEEEEec
Confidence 123444442 334444778899999875 3332 111111 13456799999998 433 22222333344431
Q ss_pred ---CCCc--ccee---------eeeeEEEEecCCCeEEEeeccCCeEEEeeecc--c--ccccccccCCCCc--E-EEe-
Q psy682 145 ---DNFS--QKLR---------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTM--Y--LALQEGKFDHPNR--L-FSS- 202 (330)
Q Consensus 145 ---~~~~--~~~~---------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~--~--g~l~~~l~gH~d~--V-iaS- 202 (330)
+.+. +.+. .....++|+|||++|++++..|+.|++ |+++ + .+.+..+..+... + +..
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~s~d 287 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV-FSVSEDGSVLSKEGFQPTETQPRGFNVDHS 287 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE-EEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE-EEEcCCCCceEEeeeecCCCccceEEECCC
Confidence 1110 0011 011258899999998888878999999 9997 2 3444444433331 2 222
Q ss_pred --HHHHHhhhccCCCcEEEEcc---cCce--eeecCCCCCCCCCcEEEeCCCc
Q psy682 203 --ISLAWKNCQRDTSDVKVHTT---FGDL--LRSLDPPSGFASPESVVMSREG 248 (330)
Q Consensus 203 --t~~lW~~SgS~Dgtvkl~~~---~G~l--l~tL~~h~~~~~v~~v~fS~dG 248 (330)
.+.+ ++..|++|.+|.. +|++ +.++... . .+..|+|.|+-
T Consensus 288 g~~l~~---~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~--~p~~i~~~~~~ 334 (343)
T 1ri6_A 288 GKYLIA---AGQKSHHISVYEIVGEQGLLHEKGRYAVG-Q--GPMWVVVNAHE 334 (343)
T ss_dssp SSEEEE---ECTTTCEEEEEEEETTTTEEEEEEEEECS-S--SCCEEEEEEEC
T ss_pred CCEEEE---ecCCCCeEEEEEEcCCCceeeEccccccC-C--CCeeEEEEccc
Confidence 2222 4557899999954 3644 4444432 2 57888888763
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.25 E-value=7e-11 Score=106.70 Aligned_cols=169 Identities=11% Similarity=0.024 Sum_probs=106.1
Q ss_pred cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee-----eeeeEEEEecC
Q psy682 89 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR-----VRHNCFVTTVD 163 (330)
Q Consensus 89 ~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~spD 163 (330)
+..|.+|+.++..+....... ...+..+.+.+|+.+..+.. .+..+..+...+.....+. .....++++||
T Consensus 99 ~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 99 THQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVEC-KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp GCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEET-TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS
T ss_pred CCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEEC-CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC
Confidence 567888887665544332110 13456788999998444211 2222333332222111111 12357889999
Q ss_pred CCeEEEeeccCCeEEEeeecccccccccccCC--CCcE--E-E-eHHHHHhhhccCCC-cEEEEcccCceeeecCCCCCC
Q psy682 164 SRFLLACGFWDNSFREPFTTMYLALQEGKFDH--PNRL--F-S-SISLAWKNCQRDTS-DVKVHTTFGDLLRSLDPPSGF 236 (330)
Q Consensus 164 g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH--~d~V--i-a-St~~lW~~SgS~Dg-tvkl~~~~G~ll~tL~~h~~~ 236 (330)
|++ +++.+.++.|++ |+.+ |+.+..+..+ .... + . +.=.+|- +.+.++ .|++|+.+|++++++..+...
T Consensus 175 g~l-~v~~~~~~~i~~-~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v-~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 175 QEI-FISDNRAHCVKV-FNYE-GQYLRQIGGEGITNYPIGVGINSNGEILI-ADNHNNFNLTIFTQDGQLISALESKVKH 250 (286)
T ss_dssp SEE-EEEEGGGTEEEE-EETT-CCEEEEESCTTTSCSEEEEEECTTCCEEE-EECSSSCEEEEECTTSCEEEEEEESSCC
T ss_pred CCE-EEEECCCCEEEE-EcCC-CCEEEEEccCCccCCCcEEEECCCCCEEE-EeCCCCEEEEEECCCCCEEEEEcccCCC
Confidence 985 677777999999 9984 7665555433 2222 2 2 2212333 566675 999999999999998876542
Q ss_pred CCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682 237 ASPESVVMSREGVIVVNYERGHIAAFTMN 265 (330)
Q Consensus 237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s~n 265 (330)
..+..|+|+|||+++++..++++..|..+
T Consensus 251 ~~~~~i~~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp SCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred CcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence 35789999999999998667889888754
No 164
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.25 E-value=5e-11 Score=109.00 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=124.9
Q ss_pred ccCCCcEEEeecccccc-cceeecCCCceeEEEeCCCCCc------C----cceeee----------ecCccEEEEEeCC
Q psy682 3 GGDKGIVEVWRTFNLAL-LYAFPSCDSSVRSLALSHDQKY------S----PMMFST----------VLDDVCMSLKFPS 61 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~-l~tl~gH~~~V~svafSpdg~~------~----~l~~~~----------~~~d~~~~v~Fs~ 61 (330)
+..++.|.+|++.+++. ...+..+.....+++|||||+. . .+.... ........+.|+|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp 137 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP 137 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC
Confidence 34578999999999988 8888888888777999999996 1 111111 0111224455555
Q ss_pred CCCeeEeeeccceeccCCcEEEEEcCCcce-EEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eeccCCCCCCCc
Q psy682 62 NSPICHVTANTYVTLHMPSVVTVTANHQFA-INRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV 138 (330)
Q Consensus 62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~t-v~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~ 138 (330)
||+.+ .++...+.. |.+|+.+........ ...-.....+..+.|+||++ +.+ +...+..+
T Consensus 138 dg~~l----------------~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v 200 (331)
T 3u4y_A 138 NGNGL----------------ILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV-ANLIGNSI 200 (331)
T ss_dssp TSSCE----------------EEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE-EETTTTEE
T ss_pred CCCEE----------------EEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE-EeCCCCeE
Confidence 55543 344444455 899987643221000 00000112456899999998 433 22223334
Q ss_pred ceeccC-CCC---ccceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccc--cccccCC----CCc------E-
Q psy682 139 PKRHLG-DNF---SQKLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL--QEGKFDH----PNR------L- 199 (330)
Q Consensus 139 ~~~~l~-~~~---~~~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l--~~~l~gH----~d~------V- 199 (330)
..+.+. +.. ...+... ...++|+|||++++++...+++|.+ |+.++|++ ++.+..+ ... +
T Consensus 201 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFN-FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMA 279 (331)
T ss_dssp EEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEE-EETTTTEEEEEEEEECCCCCCCGGGTTCCCEE
T ss_pred EEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEE-EECCCCceeeecccccccccCCCCcccccceE
Confidence 444432 111 1122221 2478899999988888777899999 99988887 3332222 111 1
Q ss_pred EEe-HHHHHhhhccCCCcEEEEcccCceeeecCCCCC
Q psy682 200 FSS-ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG 235 (330)
Q Consensus 200 iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~ 235 (330)
+.. --.+|- +++.+++|++|+..++.+..+.+.+.
T Consensus 280 ~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~~ 315 (331)
T 3u4y_A 280 LNKTETKLFI-SANISRELKVFTISGKVVGYVAGIEA 315 (331)
T ss_dssp ECTTSSEEEE-EETTTTEEEEEETTSCEEEECTTCCC
T ss_pred ECCCCCEEEE-ecCCCCcEEEEEecCCcccceecccc
Confidence 222 011111 66778899999998888777666544
No 165
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.24 E-value=5.1e-11 Score=110.17 Aligned_cols=225 Identities=8% Similarity=0.013 Sum_probs=137.2
Q ss_pred CcccCCCcEEEeecccccccceeecCC-CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 1 MSGGDKGIVEVWRTFNLALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 1 asgs~d~~V~lW~~~~g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
++++.|+.|.+||.++|+.+.+++.|. ..+.+++++|||++ +..
T Consensus 9 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i----lvs------------------------------- 53 (276)
T 3no2_A 9 VGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI----LFS------------------------------- 53 (276)
T ss_dssp EECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE----EEE-------------------------------
T ss_pred EeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE----EEe-------------------------------
Confidence 467899999999999999999999887 58899999999887 211
Q ss_pred cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCC--------CCcceec--cCCCCcc
Q psy682 80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--------APVPKRH--LGDNFSQ 149 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~--------~~~~~~~--l~~~~~~ 149 (330)
.+..|..|++++..+.+...+. .....++.+.+||.+..+..+.+ .+...|+ +......
T Consensus 54 --------~~~~V~~~d~~G~~~W~~~~~~---~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~ 122 (276)
T 3no2_A 54 --------YSKGAKMITRDGRELWNIAAPA---GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIER 122 (276)
T ss_dssp --------CBSEEEEECTTSCEEEEEECCT---TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSS
T ss_pred --------CCCCEEEECCCCCEEEEEcCCC---CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCc
Confidence 1222444444333332222110 01223456666666433222101 1111111 1110000
Q ss_pred ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--E-EEe--HHHHHhhhccCCCcEEEEccc-
Q psy682 150 KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--L-FSS--ISLAWKNCQRDTSDVKVHTTF- 223 (330)
Q Consensus 150 ~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--V-iaS--t~~lW~~SgS~Dgtvkl~~~~- 223 (330)
-......+++.+||+++ ++.+.++.|.+ |+.+ |+++-.+..+... + +.. .+.+ +++.++.|..++.+
T Consensus 123 -~~~~~~~v~~~~~G~~l-v~~~~~~~v~~-~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v---~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 123 -PHAQFRQINKNKKGNYL-VPLFATSEVRE-IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLV---ACGDAHCFVQLNLES 195 (276)
T ss_dssp -GGGSCSCCEECTTSCEE-EEETTTTEEEE-ECTT-SCEEEEEECSSCCCEEEECTTSCEEE---ECBTTSEEEEECTTT
T ss_pred -ccccccCceECCCCCEE-EEecCCCEEEE-ECCC-CCEEEEEECCCCccceeEcCCCCEEE---EeCCCCeEEEEeCcC
Confidence 00012345689999985 55668999999 9997 9887666543221 1 111 2222 56667788889886
Q ss_pred CceeeecCCCCC----CCCCcEEEeCCCccEEEEcc-----------CCeEEEEeeCCceeeeccCcccc
Q psy682 224 GDLLRSLDPPSG----FASPESVVMSREGVIVVNYE-----------RGHIAAFTMNGNRLRHESHNDNL 278 (330)
Q Consensus 224 G~ll~tL~~h~~----~~~v~~v~fS~dG~~l~s~~-----------~~~~~~~s~nG~~las~~~~~dV 278 (330)
|+++.++..+.. ...|..++..++|.++|+.. ...+.-++++|+.+-+.....++
T Consensus 196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred CcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 999999864321 01378999999999999873 33588888999998887766544
No 166
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.23 E-value=3.8e-10 Score=103.84 Aligned_cols=225 Identities=7% Similarity=-0.077 Sum_probs=135.7
Q ss_pred ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee----------------------ecCccEEEEEeC
Q psy682 3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST----------------------VLDDVCMSLKFP 60 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~----------------------~~~d~~~~v~Fs 60 (330)
.+.+++++.| .++.+..+.++...+.+++|+|||++ +.. .+...+..+.|+
T Consensus 23 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 23 IISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQL----FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH 95 (333)
T ss_dssp CCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCE----EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred EeecccCccc---ccceeEEEeccCccccCcEECCCCCE----EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence 4567899999 56778889999999999999999987 221 122334444444
Q ss_pred CCCCeeEeeeccceeccCCcEEEEEcCCc----ceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCceeccCCCC-
Q psy682 61 SNSPICHVTANTYVTLHMPSVVTVTANHQ----FAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNN- 134 (330)
Q Consensus 61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~----~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~l~~~s~~~- 134 (330)
|++.+ .++...+ ..|.+|+.++...... .... ....+..+.+++|+.+..++...
T Consensus 96 ~dg~l-----------------~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 96 KDGRL-----------------FVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp TTSCE-----------------EEEECTTSSSCCEEEEECTTSCSCEEEECSSS--SCCCEEEEEECTTSCEEEEECCCB
T ss_pred CCCcE-----------------EEEeCCCCCCCceEEEEeCCCCEEEEEEccCc--cCCcccceEECCCCCEEEEecccc
Confidence 44443 3444444 6799999987765422 1111 12346678999999955432211
Q ss_pred ----CCCcceeccCC-CCccceee---eeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccc--------cccCCC-
Q psy682 135 ----NAPVPKRHLGD-NFSQKLRV---RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQE--------GKFDHP- 196 (330)
Q Consensus 135 ----~~~~~~~~l~~-~~~~~~~~---~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~--------~l~gH~- 196 (330)
...+++..... .+ ..+.. ..+.++++|||++|+++.+.++.|.+ |+.++ |+... .+.++.
T Consensus 157 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~-~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHR-IALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp TTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE-EEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred ccCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEEE-EEecCCCcCcccccceEEEecCCCCC
Confidence 12233333211 11 11111 23578899999987887777899999 99853 43321 112221
Q ss_pred -CcEEE-eHHHHHhhhccCCCcEEEEcccCceeeecCCCCC----CCCCcEEEeCCCccEE-EEccC
Q psy682 197 -NRLFS-SISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG----FASPESVVMSREGVIV-VNYER 256 (330)
Q Consensus 197 -d~Via-St~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~----~~~v~~v~fS~dG~~l-~s~~~ 256 (330)
+.+.. ..=.+|- +...++.|.+|+.+|+.++++..+.. ...+.+++|+|||+.| ++..+
T Consensus 235 ~~~i~~d~~G~l~v-~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 235 PDSCCIDSDDNLYV-AMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEBTTCCEEE-EEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCceEECCCCCEEE-EEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 11212 2223443 55567899999999999988865432 0158999999998655 44443
No 167
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.15 E-value=8.3e-10 Score=101.13 Aligned_cols=205 Identities=9% Similarity=0.024 Sum_probs=127.8
Q ss_pred cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-ee
Q psy682 50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT 128 (330)
Q Consensus 50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~ 128 (330)
.......+.|+|+++.+|++..... ..+.+++|.+|+.+........... ..+..+.|++|++ +.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~----------~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSR----------KLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLW 104 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCT----------TTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCc----------CCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEE
Confidence 3456778899999988744321000 0013778999999766544333222 2467899999998 44
Q ss_pred ccCCCCCCCcceeccCC-CCccceee------------eeeEEEEecCCCeEEEee-ccCCeEEEeeecccccccccccC
Q psy682 129 HPTSNNNAPVPKRHLGD-NFSQKLRV------------RHNCFVTTVDSRFLLACG-FWDNSFREPFTTMYLALQEGKFD 194 (330)
Q Consensus 129 ~~s~~~~~~~~~~~l~~-~~~~~~~~------------~~~~~~~spDg~~i~asg-~~D~tirl~w~~~~g~l~~~l~g 194 (330)
++ ...+..+..+.+.. .....+.. +..+++++|||+++++++ +.++.|.+ |+.++++.+..+..
T Consensus 105 v~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~-~d~~~~~~~~~~~~ 182 (353)
T 3vgz_A 105 FG-NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV-VDGGNIKLKTAIQN 182 (353)
T ss_dssp EE-ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE-EETTTTEEEEEECC
T ss_pred EE-ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE-EcCCCCceEEEecC
Confidence 32 22223333333311 11112222 235688999999888877 45888999 99998988877763
Q ss_pred CCCcE----EEe-HHHHHhhhccCCCcEEEEcc-cCceeeecCC----CCCCCCCcEEEeCCCccEEEEc--cCCeEEEE
Q psy682 195 HPNRL----FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP----PSGFASPESVVMSREGVIVVNY--ERGHIAAF 262 (330)
Q Consensus 195 H~d~V----iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~----h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~ 262 (330)
+...+ +.. --.++ .++.|+.|.+|+. +|+.++++.. +.. .+..++|+|||+.|+.+ +++.+..|
T Consensus 183 ~~~~~~~~~~s~dg~~l~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLY--TTNADGELITIDTADNKILSRKKLLDDGKEH--FFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp CCTTCCCCEEETTTTEEE--EECTTSEEEEEETTTTEEEEEEECCCSSSCC--CEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred CCCccceEEECCCCCEEE--EEcCCCeEEEEECCCCeEEEEEEcCCCCCCc--ccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 33322 332 11111 4566899999975 7888888764 333 67889999999966555 35788888
Q ss_pred ee-CCceeeeccC
Q psy682 263 TM-NGNRLRHESH 274 (330)
Q Consensus 263 s~-nG~~las~~~ 274 (330)
.+ +|+.+.....
T Consensus 259 d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 259 DTRNGNILAKVAA 271 (353)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEEc
Confidence 76 5666655543
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.08 E-value=2.2e-09 Score=98.92 Aligned_cols=235 Identities=9% Similarity=-0.026 Sum_probs=130.0
Q ss_pred CCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C--c---cee----------eeecCccEEEEEeCCC
Q psy682 5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S--P---MMF----------STVLDDVCMSLKFPSN 62 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~--~---l~~----------~~~~~d~~~~v~Fs~~ 62 (330)
.++.|.+|++.+|+. ..+ ..+.+++|||||+. . . +.. ...... +..+.|+||
T Consensus 41 ~~~~l~~~d~~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd 114 (347)
T 2gop_A 41 YENTIVIENLKNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEEETTTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred ccceEEEEeCCCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence 367899999987764 344 57889999999986 1 0 111 111122 677889999
Q ss_pred CCeeEeeeccce-----------eccCCcEEEEEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCceecc
Q psy682 63 SPICHVTANTYV-----------TLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHP 130 (330)
Q Consensus 63 ~~v~~~~~~~~~-----------~~~~~~~v~vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~l~~~ 130 (330)
|+.|++.+.... .+..++.- ........|.+|+.+++.. ..+.. . .+..+.++||+ ++..
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~d~~~~~~~~~l~~-~-----~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLG-FFDGEKTTFWIFDTESEEVIEEFEK-P-----RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC----------CEEEEEEEETTTTEEEEEEEE-E-----TTCEEEEETTE-EEEE
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcc-cccCccceEEEEECCCCeEEeeecC-C-----CcccccCCCCe-EEEE
Confidence 987766643200 00000000 0001245688898877655 44322 1 35678999999 5542
Q ss_pred CCCC--------CCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccC-------CeEEEeeecccccccccccCC
Q psy682 131 TSNN--------NAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWD-------NSFREPFTTMYLALQEGKFDH 195 (330)
Q Consensus 131 s~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D-------~tirl~w~~~~g~l~~~l~gH 195 (330)
+... ...++... .+.. +.+........++|||++|+..+..+ ..|.+ |+ +|+......+|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~-~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE-DGKE-EKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYI-YD--GKEVMGILDEV 261 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE-TTEE-EEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEE-EC--SSCEEESSTTC
T ss_pred EecccccccccccccEEEeC-CCce-EEeccCcceeeECCCCCEEEEEEccccCCccccceEEE-EC--CCceEeccccC
Confidence 2211 11222332 2211 11211122334599999976665432 24555 66 57666555566
Q ss_pred CCcEEE----e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeE-EEEeeCCc
Q psy682 196 PNRLFS----S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHI-AAFTMNGN 267 (330)
Q Consensus 196 ~d~Via----S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~-~~~s~nG~ 267 (330)
...+-. + -+.+ +++.|++++|| . +|++.+. .++.+ .|.+++|+| .+++++ +.+.. .+|..||+
T Consensus 262 ~~~~~~~~~~sdg~~~---~~~~~~~~~l~-~~~g~~~~~-~~~~~--~v~~~~~s~--~~~~~~~~~~~~~~l~~~~g~ 332 (347)
T 2gop_A 262 DRGVGQAKIKDGKVYF---TLFEEGSVNLY-IWDGEIKPI-AKGRH--WIMGFDVDE--IVVYLKETATRLRELFTWDGE 332 (347)
T ss_dssp CSEEEEEEEETTEEEE---EEEETTEEEEE-EESSSEEEE-ECSSS--EEEEEEESS--SEEEEEECSSSCCEEEEESSS
T ss_pred CcccCCccEEcCcEEE---EEecCCcEEEE-EcCCceEEE-ecCCC--eEEeeeeeC--cEEEEEcCCCChHHheEeCCc
Confidence 554421 1 1111 67889999999 6 4776444 44455 799999999 566555 44433 56665543
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.06 E-value=1.5e-09 Score=97.84 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=113.9
Q ss_pred EEcCCcceEEEeCCCCCCcccCCCCC--CCCCCCCCCccc-cCCCceeccCCCCCCCcceeccCCCCcccee----eeee
Q psy682 84 VTANHQFAINRWNPDYAASIQSPSYA--ETPGSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDNFSQKLR----VRHN 156 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~~~~~~h~--~~~~~~~~~l~f-s~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~----~~~~ 156 (330)
++...+..|.+|++++.......... ......+..+.+ .+|+.+.++..+.+..+..+...+.....+. ....
T Consensus 45 v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~ 124 (286)
T 1q7f_A 45 VADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR 124 (286)
T ss_dssp EEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE
T ss_pred EEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce
Confidence 45555677888888755443332110 000123456777 5788754422211222333322111111111 1235
Q ss_pred EEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE--E--EeHHHHHhhhccCCCcEEEEcccCceeeec
Q psy682 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL--F--SSISLAWKNCQRDTSDVKVHTTFGDLLRSL 230 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V--i--aSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL 230 (330)
.++++|||++ +++...++.|++ |+.+ |+.+..+. ++...+ + ...=.+|- +.+.++.|++|+.+|+.++++
T Consensus 125 ~i~~~~~g~l-~v~~~~~~~i~~-~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 125 GVTVDNKGRI-IVVECKVMRVII-FDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI-SDNRAHCVKVFNYEGQYLRQI 200 (286)
T ss_dssp EEEECTTSCE-EEEETTTTEEEE-ECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE-EEGGGTEEEEEETTCCEEEEE
T ss_pred EEEEeCCCCE-EEEECCCCEEEE-EcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE-EECCCCEEEEEcCCCCEEEEE
Confidence 7889999986 666667899999 9974 76655442 232222 2 22112332 666789999999999999998
Q ss_pred CCCCCCCCCcEEEeCCCccEEEEcc-CC-eEEEEeeCCceeeeccC
Q psy682 231 DPPSGFASPESVVMSREGVIVVNYE-RG-HIAAFTMNGNRLRHESH 274 (330)
Q Consensus 231 ~~h~~~~~v~~v~fS~dG~~l~s~~-~~-~~~~~s~nG~~las~~~ 274 (330)
..+.....+..|+|+|||+++|+.. .+ .+..|.++|+.+.....
T Consensus 201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES 246 (286)
T ss_dssp SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE
T ss_pred ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc
Confidence 7653212789999999999999884 44 89999999998877754
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.05 E-value=7.6e-10 Score=113.01 Aligned_cols=210 Identities=9% Similarity=-0.056 Sum_probs=120.2
Q ss_pred CCCcEEEeeccccccc--ceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682 5 DKGIVEVWRTFNLALL--YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV 82 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l--~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v 82 (330)
.|++|++|++.+|+.+ ..+. ..+.+++|||||+. ++
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~---------------------------------------la 125 (719)
T 1z68_A 88 YTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSK---------------------------------------LA 125 (719)
T ss_dssp EEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTC---------------------------------------EE
T ss_pred cceEEEEEECCCCccccceecC---cccccceECCCCCE---------------------------------------EE
Confidence 3789999999888763 3332 46888888888887 22
Q ss_pred EEEcCCcceEEEeCCCCCCcccCC--CCCCCCC-------------CCCCCccccCCCc-eeccCCCCCC----------
Q psy682 83 TVTANHQFAINRWNPDYAASIQSP--SYAETPG-------------SPPGNLPLTLDPI-LTHPTSNNNA---------- 136 (330)
Q Consensus 83 ~vS~~~~~tv~lW~~~~~~~~~~~--~h~~~~~-------------~~~~~l~fs~D~~-l~~~s~~~~~---------- 136 (330)
.++ +.+|++|+.+++...++. ++...+. ....++.|||||+ ++.++.+...
T Consensus 126 ~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 126 YVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp EEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred EEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 232 457999999776654432 3321110 1225799999999 6554332111
Q ss_pred ----------------------CcceeccCCCCc---------cce---eeeeeEEEEecCCCeEEEeec-cCC--eEEE
Q psy682 137 ----------------------PVPKRHLGDNFS---------QKL---RVRHNCFVTTVDSRFLLACGF-WDN--SFRE 179 (330)
Q Consensus 137 ----------------------~~~~~~l~~~~~---------~~~---~~~~~~~~~spDg~~i~asg~-~D~--tirl 179 (330)
.++.+.+...-. ..+ ......+++|||++++++... .++ .|.+
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 112222211100 001 112357889999876444221 222 3677
Q ss_pred eee----cccccccccc----cCCCCcE---------EEe--H-HHHHhhhccCCCcEEE--EcccCceeeecCCCCCCC
Q psy682 180 PFT----TMYLALQEGK----FDHPNRL---------FSS--I-SLAWKNCQRDTSDVKV--HTTFGDLLRSLDPPSGFA 237 (330)
Q Consensus 180 ~w~----~~~g~l~~~l----~gH~d~V---------iaS--t-~~lW~~SgS~Dgtvkl--~~~~G~ll~tL~~h~~~~ 237 (330)
|+ .++|+....+ .+|...| ++. . +.++ +...||...| |+..|...+.|.++..
T Consensus 283 -~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~--~~~~~g~~~l~~~~~~~~~~~~lt~~~~-- 357 (719)
T 1z68_A 283 -CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI--FSDKDGYKHIHYIKDTVENAIQITSGKW-- 357 (719)
T ss_dssp -EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE--EECTTSCEEEEEESSCSTTCEECSCSSS--
T ss_pred -EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE--EEccCCceEEEEEECCCCceEecccCce--
Confidence 88 7788877766 3565432 222 1 1111 3445665555 5666655788887766
Q ss_pred CCcEEEeCCCccEEEEc-cC-----CeEEEEeeC
Q psy682 238 SPESVVMSREGVIVVNY-ER-----GHIAAFTMN 265 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~-~~-----~~~~~~s~n 265 (330)
.|..+.++ ||+.|+.. .+ +..++|.++
T Consensus 358 ~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 358 EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 68888888 77766554 33 556666654
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.04 E-value=2.2e-09 Score=101.22 Aligned_cols=220 Identities=7% Similarity=0.024 Sum_probs=123.5
Q ss_pred CceeEEEeCCC-CCcCcceeee-ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC-CCCccc
Q psy682 28 SSVRSLALSHD-QKYSPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQ 104 (330)
Q Consensus 28 ~~V~svafSpd-g~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~ 104 (330)
..|..+.|.++ |++..+.... .....+..+.|+||++.+|+ + +.+ +|.+|+.+ .+.+..
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~---------------~--~~~-~v~~~~~~~~g~~~~ 75 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG---------------A--AMK-KWSSFAVKSPTEIVH 75 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE---------------E--EBT-EEEEEEEEETTEEEE
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEE---------------E--ccc-eEEEEEECCCCCEEE
Confidence 46888888764 4443222211 23346778999999997632 2 233 78999875 333332
Q ss_pred CCCCCCCCCCCCCCccccCCCc--ee-ccC------CC-----CCCCcceeccC--CCCcccee-------eeeeEEEEe
Q psy682 105 SPSYAETPGSPPGNLPLTLDPI--LT-HPT------SN-----NNAPVPKRHLG--DNFSQKLR-------VRHNCFVTT 161 (330)
Q Consensus 105 ~~~h~~~~~~~~~~l~fs~D~~--l~-~~s------~~-----~~~~~~~~~l~--~~~~~~~~-------~~~~~~~~s 161 (330)
...+.. ...+.++.|+||++ ++ ++. .+ .+.....+.+. +.+.+.+. .+..+++|+
T Consensus 76 ~~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 76 EASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp EEEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred eeEeec--CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence 222210 01245799999999 33 221 01 11222333332 22222222 134578899
Q ss_pred cCCCeEEEeeccCCeEEEeeecc-ccccc--cccc--CCCCcE----EEe-HHHHHhhhccCCCcEEEEcc---cCcee-
Q psy682 162 VDSRFLLACGFWDNSFREPFTTM-YLALQ--EGKF--DHPNRL----FSS-ISLAWKNCQRDTSDVKVHTT---FGDLL- 227 (330)
Q Consensus 162 pDg~~i~asg~~D~tirl~w~~~-~g~l~--~~l~--gH~d~V----iaS-t~~lW~~SgS~Dgtvkl~~~---~G~ll- 227 (330)
|||++|+++...+++|++ |+++ +|++. ..+. .|...+ +.. --.++- +...+++|.+|.. +|++.
T Consensus 154 pdG~~l~~~~~~~~~v~~-~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 154 PTETYLYSADLTANKLWT-HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp TTSSEEEEEETTTTEEEE-EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCEEEEEcCCCCEEEE-EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE-EECCCCeEEEEEEeCCCCcEEE
Confidence 999998887766789999 9998 67753 2232 122322 222 101111 3445789999854 57763
Q ss_pred -----eecCCC-CCCC-------CCcEEE-eCCCccEEEEcc--CC-----eEEEEee--CCcee
Q psy682 228 -----RSLDPP-SGFA-------SPESVV-MSREGVIVVNYE--RG-----HIAAFTM--NGNRL 269 (330)
Q Consensus 228 -----~tL~~h-~~~~-------~v~~v~-fS~dG~~l~s~~--~~-----~~~~~s~--nG~~l 269 (330)
.++..+ .+.. .+..++ |||||+.|+.++ .+ ++..|.+ +|++.
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 233221 1101 378999 999999887653 33 8999987 46643
No 172
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.02 E-value=5.7e-09 Score=97.20 Aligned_cols=211 Identities=12% Similarity=0.112 Sum_probs=119.4
Q ss_pred cCCCceeEEEeCCC-CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC--CcceEEEeCCCCC-
Q psy682 25 SCDSSVRSLALSHD-QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN--HQFAINRWNPDYA- 100 (330)
Q Consensus 25 gH~~~V~svafSpd-g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~--~~~tv~lW~~~~~- 100 (330)
+....|+-..|.++ |++..+... +......++|+||++.+|+. +.+ ..++|.+|+.+..
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~---------------~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSV---------------NEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEE---------------ECCSSTTCEEEEEEEETTT
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEE---------------EccCCCCCcEEEEEEeCCC
Confidence 34567777788764 444333222 55566778999999986333 332 4578899987642
Q ss_pred -CcccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--CCCccc----------------eeeeeeE
Q psy682 101 -ASIQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG--DNFSQK----------------LRVRHNC 157 (330)
Q Consensus 101 -~~~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~--~~~~~~----------------~~~~~~~ 157 (330)
.+... ..+. ..+..+++ |++ +.++.. .+..+..+.+. +.+.+. ...+..+
T Consensus 87 g~~~~~~~~~~~~----~~p~~~~~--dg~~l~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (361)
T 3scy_A 87 GTLHLLNTQKTMG----ADPCYLTT--NGKNIVTANY-SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC 159 (361)
T ss_dssp TEEEEEEEEECSS----SCEEEEEE--CSSEEEEEET-TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred CcEEEeeEeccCC----CCcEEEEE--CCCEEEEEEC-CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence 22221 1222 23345666 777 443221 22223333321 111100 0112256
Q ss_pred EEEecCCCeEEEeeccCCeEEEeeeccccc-------ccc------cccCCCCcE----EEe---HHHHHhhhccCCCcE
Q psy682 158 FVTTVDSRFLLACGFWDNSFREPFTTMYLA-------LQE------GKFDHPNRL----FSS---ISLAWKNCQRDTSDV 217 (330)
Q Consensus 158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~-------l~~------~l~gH~d~V----iaS---t~~lW~~SgS~Dgtv 217 (330)
++|+|||++|++++..+++|++ |+++... +.. ....+.... +.. .+.+ +...+++|
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v---~~~~~~~v 235 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHK-FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL---INEIGGTV 235 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEE-EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE---EETTTCEE
T ss_pred EEECCCCCEEEEEeCCCCEEEE-EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE---EcCCCCeE
Confidence 8899999998998888999999 9876432 211 111122211 222 1211 45578999
Q ss_pred EEEcc-cCce--eeec---CCCCCCCCCcEEEeCCCccEEEEc--c-CCeEEEEeeC
Q psy682 218 KVHTT-FGDL--LRSL---DPPSGFASPESVVMSREGVIVVNY--E-RGHIAAFTMN 265 (330)
Q Consensus 218 kl~~~-~G~l--l~tL---~~h~~~~~v~~v~fS~dG~~l~s~--~-~~~~~~~s~n 265 (330)
.+|+. +|++ +.++ ..+.. .+..++|||||+.|+.+ + .+.+.+|.++
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~--~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQ--GSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCC--CEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEEEecCCceEEeEEEecCCCCCC--CcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 99976 5654 3333 22323 57899999999987554 3 4789999885
No 173
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.99 E-value=1.6e-09 Score=111.40 Aligned_cols=228 Identities=9% Similarity=-0.099 Sum_probs=127.4
Q ss_pred cccCCCcEEEeecccccccceeecCCCce--eEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSV--RSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V--~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
+|+++.+|++|++.+|+.+. ..+-..+ .+++|||||+. ++.++.....-...
T Consensus 142 ~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~------------------------l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 142 NAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKG------------------------FYYEWLPTDPSIKV 195 (695)
T ss_dssp TTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSE------------------------EEEEECCCCTTSCG
T ss_pred CCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCE------------------------EEEEEecCCCCCcc
Confidence 46677899999999988651 1222333 57888888776 11111000000000
Q ss_pred cEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCC--CCCcceeccCCCCccce
Q psy682 80 SVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN--NAPVPKRHLGDNFSQKL 151 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~--~~~~~~~~l~~~~~~~~ 151 (330)
........|++|+..++... ...+|. .....+.+||||+ ++..+.+. ...++.+.....-.+.+
T Consensus 196 ----~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l 267 (695)
T 2bkl_A 196 ----DERPGYTTIRYHTLGTEPSKDTVVHERTGDP----TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL 267 (695)
T ss_dssp ----GGGGGGCEEEEEETTSCGGGCEEEECCCCCT----TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred ----ccCCCCCEEEEEECCCCchhceEEEecCCCC----EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence 00122344899998655421 111221 2345789999999 44333222 22333333211111222
Q ss_pred eeee---eEEEEecCCCeEEEeeccC---CeEEEeeecccccc--cccccCCC-CcEEE----e--HHHHHhhhccCCCc
Q psy682 152 RVRH---NCFVTTVDSRFLLACGFWD---NSFREPFTTMYLAL--QEGKFDHP-NRLFS----S--ISLAWKNCQRDTSD 216 (330)
Q Consensus 152 ~~~~---~~~~~spDg~~i~asg~~D---~tirl~w~~~~g~l--~~~l~gH~-d~Via----S--t~~lW~~SgS~Dgt 216 (330)
..+. .... .+||+ ++..+.++ ..|.+ |++++++. .+.+..|. +..+. + .+.+ +.+.|++
T Consensus 268 ~~~~~~~~~~~-~~~g~-l~~~s~~~~~~~~l~~-~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~---~~~~dg~ 341 (695)
T 2bkl_A 268 VKGVGAKYEVH-AWKDR-FYVLTDEGAPRQRVFE-VDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSL---EYLKDAT 341 (695)
T ss_dssp EECSSCCEEEE-EETTE-EEEEECTTCTTCEEEE-EBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEE---EEEETTE
T ss_pred ecCCCceEEEE-ecCCc-EEEEECCCCCCCEEEE-EeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEE---EEEECCE
Confidence 2221 2333 47888 66666544 67888 99877653 24455543 44321 1 2333 7889999
Q ss_pred EEEEcc--cCceeeecCCC-CCCCCCcEEEeCCCccEEEEc-c----CCeEEEEeeCCceeee
Q psy682 217 VKVHTT--FGDLLRSLDPP-SGFASPESVVMSREGVIVVNY-E----RGHIAAFTMNGNRLRH 271 (330)
Q Consensus 217 vkl~~~--~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~s~-~----~~~~~~~s~nG~~las 271 (330)
.+||.. +|+.+++|..| .+ .|..+++||||+.++.. + .+++..|.+++..+..
T Consensus 342 ~~l~~~~~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~ 402 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQLPGVG--AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSEL 402 (695)
T ss_dssp EEEEEEETTCCEEEECCCSSSS--EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEEEEEeCCCCeeEEecCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 999854 69888888876 44 78889999999877632 2 4578888876644433
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.97 E-value=3.5e-09 Score=106.87 Aligned_cols=175 Identities=9% Similarity=-0.082 Sum_probs=102.0
Q ss_pred CCcceEEEeC-CCCCCcccCCCCCCCCCCCC-----CCccc--cCCCce-eccCCCCCCCcceeccC----CCCccceee
Q psy682 87 NHQFAINRWN-PDYAASIQSPSYAETPGSPP-----GNLPL--TLDPIL-THPTSNNNAPVPKRHLG----DNFSQKLRV 153 (330)
Q Consensus 87 ~~~~tv~lW~-~~~~~~~~~~~h~~~~~~~~-----~~l~f--s~D~~l-~~~s~~~~~~~~~~~l~----~~~~~~~~~ 153 (330)
+.++..++|. ..++..+++.+|...+...+ ..+.+ |||++. ++.+++.+..++...+. +. .+.+..
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~ 122 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTP 122 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSC
T ss_pred ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccC
Confidence 5566778887 34555556655543222111 03334 499986 54445445556666654 22 122222
Q ss_pred --------eeeEEEEecCCCeEEEeeccC----------CeEEEeeeccc------cccccccc-CCCCcE----EEe--
Q psy682 154 --------RHNCFVTTVDSRFLLACGFWD----------NSFREPFTTMY------LALQEGKF-DHPNRL----FSS-- 202 (330)
Q Consensus 154 --------~~~~~~~spDg~~i~asg~~D----------~tirl~w~~~~------g~l~~~l~-gH~d~V----iaS-- 202 (330)
....++|||||+.|+.+. .| .+|++ |++++ +++. .+. .+.+.+ ++.
T Consensus 123 ~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 123 VSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAA-VPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp CCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEE-EETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTS
T ss_pred CccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEE-EECCCCccccCCcee-EEEecCCCcccCceECCCC
Confidence 335788999999966554 45 57888 99986 5554 444 554544 221
Q ss_pred HHHHHhhhccCC--------CcEEEEccc--C---ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC--eEEEEeeCC
Q psy682 203 ISLAWKNCQRDT--------SDVKVHTTF--G---DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG--HIAAFTMNG 266 (330)
Q Consensus 203 t~~lW~~SgS~D--------gtvkl~~~~--G---~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~--~~~~~s~nG 266 (330)
..++ .++.| .+|.+|+.+ | +..+.+.+|.. .+..++|||||+++++++ ++ .|..+..++
T Consensus 200 ~~la---~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~--~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 200 RQAV---WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE--AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp SEEE---EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB--CEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred CEEE---EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc--eEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 2222 12222 468888775 5 44444444556 799999999999887775 44 566666534
Q ss_pred ceee
Q psy682 267 NRLR 270 (330)
Q Consensus 267 ~~la 270 (330)
..+.
T Consensus 275 ~~~~ 278 (662)
T 3azo_A 275 GAAT 278 (662)
T ss_dssp CCEE
T ss_pred Ccee
Confidence 4333
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.94 E-value=2.5e-08 Score=92.62 Aligned_cols=249 Identities=9% Similarity=-0.079 Sum_probs=125.5
Q ss_pred CCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEe---------------CCCCCeeEeee
Q psy682 6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKF---------------PSNSPICHVTA 70 (330)
Q Consensus 6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~F---------------s~~~~v~~~~~ 70 (330)
+..|.+|++.+|+......++......++|||||+. + +.....+.++.+.. +++|..+++.+
T Consensus 59 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~--l-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~ 135 (396)
T 3c5m_A 59 NRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA--F-FYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSD 135 (396)
T ss_dssp SCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE--E-EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT
T ss_pred CceEEEEECCCCcEEEeecCCCCccccceECCCCCE--E-EEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEecc
Confidence 346888898877755444444444445889999987 1 11111222322221 22222222211
Q ss_pred ccc--------eeccCCcEEEEE-----cCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCC
Q psy682 71 NTY--------VTLHMPSVVTVT-----ANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNN 135 (330)
Q Consensus 71 ~~~--------~~~~~~~~v~vS-----~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~ 135 (330)
... +.+.+++...+. .+.+..|.+|+.+++.......+. .....+.|+| |+. ++..+.+..
T Consensus 136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~----~~~~~~~~sp~dg~~l~~~~~~~~ 211 (396)
T 3c5m_A 136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT----AWLGHPIYRPFDDSTVGFCHEGPH 211 (396)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES----SCEEEEEEETTEEEEEEEEECSCS
T ss_pred CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC----cccccceECCCCCCEEEEEecCCC
Confidence 100 111222211111 145667899998776655444332 2355789999 787 554333322
Q ss_pred ----CCcceeccCCCCcccee-----eeeeEEEEecCCCeEEEeeccC----CeEEEeeeccccccccc--ccCCCCcEE
Q psy682 136 ----APVPKRHLGDNFSQKLR-----VRHNCFVTTVDSRFLLACGFWD----NSFREPFTTMYLALQEG--KFDHPNRLF 200 (330)
Q Consensus 136 ----~~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~i~asg~~D----~tirl~w~~~~g~l~~~--l~gH~d~Vi 200 (330)
..++...+.+.-.+.+. .....++|+|||++|+..+..+ ++|.+ |++++|+.... ..++. ..+
T Consensus 212 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~-~d~~~g~~~~l~~~~~~~-~~~ 289 (396)
T 3c5m_A 212 DLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK-ANPETLENEEVMVMPPCS-HLM 289 (396)
T ss_dssp SSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE-ECTTTCCEEEEEECCSEE-EEE
T ss_pred CCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE-EECCCCCeEEeeeCCCCC-CCc
Confidence 23444443221111111 1234578999999866655432 45899 99987765332 11221 112
Q ss_pred Ee---HHHHHh-------------hhccCCCcEEEEcccCceeeecCCCCCCC---------CCcEEEeCCCccEEEEcc
Q psy682 201 SS---ISLAWK-------------NCQRDTSDVKVHTTFGDLLRSLDPPSGFA---------SPESVVMSREGVIVVNYE 255 (330)
Q Consensus 201 aS---t~~lW~-------------~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~---------~v~~v~fS~dG~~l~s~~ 255 (330)
+. ...+.. .+...++.|.+|+..+..++.|..+.... .+..++|||||+.|+..+
T Consensus 290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 11 111100 00123577888887544456666554310 156789999999888763
Q ss_pred --CCeEEEEe
Q psy682 256 --RGHIAAFT 263 (330)
Q Consensus 256 --~~~~~~~s 263 (330)
.+...+|.
T Consensus 370 ~~~~~~~l~~ 379 (396)
T 3c5m_A 370 DFEGVPAIYI 379 (396)
T ss_dssp CTTSSCEEEE
T ss_pred cCCCCceEEE
Confidence 33434443
No 176
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.93 E-value=1.8e-08 Score=91.14 Aligned_cols=106 Identities=9% Similarity=0.008 Sum_probs=72.3
Q ss_pred eEEEEe----cCCCeEEEeeccCCeEEEeeecc-ccc-----ccccccCCC-Cc---EEEe-HHHHHhhhccCCCcEEEE
Q psy682 156 NCFVTT----VDSRFLLACGFWDNSFREPFTTM-YLA-----LQEGKFDHP-NR---LFSS-ISLAWKNCQRDTSDVKVH 220 (330)
Q Consensus 156 ~~~~~s----pDg~~i~asg~~D~tirl~w~~~-~g~-----l~~~l~gH~-d~---ViaS-t~~lW~~SgS~Dgtvkl~ 220 (330)
+.++++ |||+.|+++...++.|.+ |+.+ +|+ ....+.++. .. +..+ .=.+|- +...++.|.+|
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~~~~~~i~~~ 252 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWS-YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV-ANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEE-EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE-EEETTTEEEEE
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEE-EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE-EEcCCCEEEEE
Confidence 567899 999887888777899999 9875 354 222333332 21 2222 223443 44567889999
Q ss_pred ccc-CceeeecCCCCCCCCCcEEEeCCCccEE-EEc-cCCeEEEEeeC
Q psy682 221 TTF-GDLLRSLDPPSGFASPESVVMSREGVIV-VNY-ERGHIAAFTMN 265 (330)
Q Consensus 221 ~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s~n 265 (330)
+.+ |++++.+..+.. .+.+++|+|||+.| ++. .++.+..|.++
T Consensus 253 d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 887 999888887766 89999999999944 443 35678888765
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.91 E-value=1.7e-08 Score=96.13 Aligned_cols=85 Identities=13% Similarity=-0.009 Sum_probs=64.0
Q ss_pred EEEecCCCeEEEeec----------cCCeEEEeeecccccccccccCCCCcE-E-Ee--HHHHHhhhccCCCcEEEEcc-
Q psy682 158 FVTTVDSRFLLACGF----------WDNSFREPFTTMYLALQEGKFDHPNRL-F-SS--ISLAWKNCQRDTSDVKVHTT- 222 (330)
Q Consensus 158 ~~~spDg~~i~asg~----------~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS--t~~lW~~SgS~Dgtvkl~~~- 222 (330)
++|+||++.++++.+ ...+|.+ |++.+++.+.++..+. .- + .+ --.|+ +++. ++|.+|+.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v-iD~~t~~~v~~i~~~~-p~~ia~spdg~~l~--v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV-MDTKTKQRVARIPGRD-ALSMTIDQQRNLML--TLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEE-EETTTTEEEEEEECTT-CCEEEEETTTTEEE--EECS-SCEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEE-EECCCCcEEEEEecCC-eeEEEECCCCCEEE--EeCC-CeEEEEECC
Confidence 789999999888754 1347888 9999999998888776 22 2 22 11333 3444 99999975
Q ss_pred cC--ceeeecCCCCCCCCCcEEEeCCCcc
Q psy682 223 FG--DLLRSLDPPSGFASPESVVMSREGV 249 (330)
Q Consensus 223 ~G--~ll~tL~~h~~~~~v~~v~fS~dG~ 249 (330)
+| ++++++.++.. .++.++|+|||.
T Consensus 334 t~~l~~~~~i~~~G~--~P~~~~~~p~G~ 360 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAE--ASLQVQFHPVGG 360 (361)
T ss_dssp SSSCEEEEEETTSCS--SEEEEEECCCSC
T ss_pred CCcceeeEEeccCCC--CcEEEEecCCCC
Confidence 79 99999876666 789999999986
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.89 E-value=1.2e-08 Score=92.61 Aligned_cols=208 Identities=10% Similarity=-0.007 Sum_probs=125.3
Q ss_pred ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeC
Q psy682 17 LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN 96 (330)
Q Consensus 17 g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~ 96 (330)
+..+..+..+.....+++|+|||+. +.+++..++.|.+|+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~----------------------------------------l~~~~~~~~~i~~~~ 56 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSA----------------------------------------VIFSDVRQNRTWAWS 56 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTE----------------------------------------EEEEEGGGTEEEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCE----------------------------------------EEEEeCCCCEEEEEE
Confidence 4555666667777777777777762 135566677899999
Q ss_pred CCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceecc-CCCCcccee-------eeeeEEEEecCCCeEE
Q psy682 97 PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL-GDNFSQKLR-------VRHNCFVTTVDSRFLL 168 (330)
Q Consensus 97 ~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l-~~~~~~~~~-------~~~~~~~~spDg~~i~ 168 (330)
+++. ......+. ..+..+.+++|+.+.++.. +...+..+.. .+.+..-.. ...+.++++|||++++
T Consensus 57 ~~~~-~~~~~~~~----~~~~~l~~~~dg~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v 130 (296)
T 3e5z_A 57 DDGQ-LSPEMHPS----HHQNGHCLNKQGHLIACSH-GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWF 130 (296)
T ss_dssp TTSC-EEEEESSC----SSEEEEEECTTCCEEEEET-TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEE
T ss_pred CCCC-eEEEECCC----CCcceeeECCCCcEEEEec-CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEE
Confidence 8776 44443333 3466799999999554222 2223334333 111111000 0124688999998754
Q ss_pred Ee---eccC-----------CeEEEeeeccc-ccccccccCCCCcE---EEe-HHHHHhhhccCCCcEEEEcc--cCce-
Q psy682 169 AC---GFWD-----------NSFREPFTTMY-LALQEGKFDHPNRL---FSS-ISLAWKNCQRDTSDVKVHTT--FGDL- 226 (330)
Q Consensus 169 as---g~~D-----------~tirl~w~~~~-g~l~~~l~gH~d~V---iaS-t~~lW~~SgS~Dgtvkl~~~--~G~l- 226 (330)
+. |+.+ +.-+| |.++. |++. .+.++.... ..+ .-+++ ++.+.++.|.+|+. +|++
T Consensus 131 td~~~g~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~-~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~ 207 (296)
T 3e5z_A 131 SDPTYGIDKPEEGYGGEMELPGRWV-FRLAPDGTLS-APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETE 207 (296)
T ss_dssp EECSHHHHCGGGSSCCCCCSSSCEE-EEECTTSCEE-EEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEE
T ss_pred ECCccccccccccccccccCCCcEE-EEECCCCCEE-EeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCc
Confidence 42 3211 12245 54432 4443 233333322 222 11112 27888899999976 5776
Q ss_pred --eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCcc
Q psy682 227 --LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHND 276 (330)
Q Consensus 227 --l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~ 276 (330)
.+.+..+.+ .+..+++++||++.++. .+.+..|+++|+.+.......
T Consensus 208 ~~~~~~~~~~~--~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~ 256 (296)
T 3e5z_A 208 YQGVHFTVEPG--KTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQ 256 (296)
T ss_dssp EEEEEECCSSS--CCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSS
T ss_pred CCCeEeeCCCC--CCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCC
Confidence 555633444 78999999999998888 788999999999988776543
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.87 E-value=1.6e-08 Score=104.08 Aligned_cols=224 Identities=11% Similarity=-0.007 Sum_probs=126.2
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEc
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTA 86 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~ 86 (330)
.+|++|++.+|+.+.....+ ..+.+++|||||+. +++++.....-..+...+ ..
T Consensus 151 ~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~------------------------l~~~~~~~~~~~~~~~~~-~~ 204 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKG------------------------MFYNAYPQQDGKSDGTET-ST 204 (710)
T ss_dssp EEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSE------------------------EEEEECCCCSSCCSSSCC-CC
T ss_pred EEEEEEECCCCCCCcccccC-cccceEEEEeCCCE------------------------EEEEEECCcccccccccc-cc
Confidence 48999999888766532222 22667888888776 111111000000000000 01
Q ss_pred CCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCC---CCCcceeccCC------C--Ccc
Q psy682 87 NHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN---NAPVPKRHLGD------N--FSQ 149 (330)
Q Consensus 87 ~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~---~~~~~~~~l~~------~--~~~ 149 (330)
.....|++|+..++... +...|. .....+.+||||+ ++..+..+ +..++.+.+.. . -.+
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEP----KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCT----TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCC----eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 23445888888654321 111121 1234789999999 44333212 23344444432 1 112
Q ss_pred ceeeee--eEEEEecCCCeEEEeeccCC---eEEEeeeccccc--ccccccCCCCc-EEE----e---HHHHHhhhccCC
Q psy682 150 KLRVRH--NCFVTTVDSRFLLACGFWDN---SFREPFTTMYLA--LQEGKFDHPNR-LFS----S---ISLAWKNCQRDT 214 (330)
Q Consensus 150 ~~~~~~--~~~~~spDg~~i~asg~~D~---tirl~w~~~~g~--l~~~l~gH~d~-Via----S---t~~lW~~SgS~D 214 (330)
.+..+. ....++|||+.|+..+..+. .|.+ |++++++ ..+.+..|.+. ++. + .+.+ +++.|
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~---~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLIN-IDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL---CYLHD 356 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE-EETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE---EEEET
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEE-EeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE---EEEEC
Confidence 222221 23358999998777665443 4777 8887664 24567777662 321 1 2222 77889
Q ss_pred CcEEEE--cc-cCceeeecCCCCCCCCCcEEEeCCCccEEE-Ecc----CCeEEEEeeCC
Q psy682 215 SDVKVH--TT-FGDLLRSLDPPSGFASPESVVMSREGVIVV-NYE----RGHIAAFTMNG 266 (330)
Q Consensus 215 gtvkl~--~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~-s~~----~~~~~~~s~nG 266 (330)
+..+|| +. +|+.++.|..|.+ .|..++++|||..++ +++ ..++..|.+..
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVG--SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSS--EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CEEEEEEEECCCCCEEEecCCCCc--eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 877775 55 7999999998866 899999999997665 332 46788888754
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.83 E-value=1.2e-07 Score=88.78 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=137.8
Q ss_pred ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeee-cCccEEEEEeCCCCCee-Eeeecc------c-
Q psy682 3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTV-LDDVCMSLKFPSNSPIC-HVTANT------Y- 73 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~-~~d~~~~v~Fs~~~~v~-~~~~~~------~- 73 (330)
...+++|.+||..+++.+.+++. ....+.|+|+|||++ +... .+..+..+-.. .++++ .+.... .
T Consensus 60 ~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~l----yv~~~~~~~v~~iD~~-t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 60 VNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKA----YVTQIWDYRIFIINPK-TYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEE----EEEEBSCSEEEEEETT-TTEEEEEEECTTCCTTTCBC
T ss_pred EcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeE----EEEECCCCeEEEEECC-CCeEEEEEEcCCccccCCCc
Confidence 34578999999999999999864 577899999999865 3332 33444333221 12222 111111 1
Q ss_pred --eeccCCcEEEEEcC-CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCC---------CCCccee
Q psy682 74 --VTLHMPSVVTVTAN-HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN---------NAPVPKR 141 (330)
Q Consensus 74 --~~~~~~~~v~vS~~-~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~---------~~~~~~~ 141 (330)
+.+ ....+-|+.. .+.+|.++++..........- ...+..+.+++|+++...+.+. ...+...
T Consensus 134 ~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 134 EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 223 3344445543 477899999876553332211 1235679999999955433332 1223333
Q ss_pred ccC-CCCccceee----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCc
Q psy682 142 HLG-DNFSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSD 216 (330)
Q Consensus 142 ~l~-~~~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgt 216 (330)
... ..+.+++.. +...++++||+++|+++.. +|.+ |+.+++++....+-
T Consensus 209 d~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~-~d~~t~~~~~~~~~---------------------- 262 (328)
T 3dsm_A 209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWR-MPVEADRVPVRPFL---------------------- 262 (328)
T ss_dssp ETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEE-EETTCSSCCSSCSB----------------------
T ss_pred ECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEE-EECCCCceeeeeee----------------------
Confidence 321 111122222 3468899999999888753 7777 88877765421110
Q ss_pred EEEEcccCceeeecCCCCCCCCCcEEEeCC-CccEEEEc-----cCCeEEEEeeCCceeeeccCccccccccccccchh
Q psy682 217 VKVHTTFGDLLRSLDPPSGFASPESVVMSR-EGVIVVNY-----ERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLP 289 (330)
Q Consensus 217 vkl~~~~G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~-----~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p 289 (330)
..+.. .+..++++| +|.+.++. ..+.+..|+++|+.+.+... ...|.-+.+|
T Consensus 263 --------------~~~~~--~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~-----G~~P~~~~~~ 320 (328)
T 3dsm_A 263 --------------EFRDT--KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYV-----GIIPGAFCWK 320 (328)
T ss_dssp --------------CCCSS--CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEE-----EESEEEEEEE
T ss_pred --------------cCCCC--ceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEe-----ccCcceEEEe
Confidence 00012 689999999 67777775 46789999999999988742 3446666665
No 181
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.81 E-value=4.4e-08 Score=89.19 Aligned_cols=194 Identities=9% Similarity=-0.026 Sum_probs=111.4
Q ss_pred ccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceee
Q psy682 76 LHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRV 153 (330)
Q Consensus 76 ~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~ 153 (330)
+.++..+.|+++.+++|++|+....... +...+.. ..+..+.|+||++.+..+...+..+..+.+.. .....+..
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 3444445688888899999998765543 3222210 13567999999983222222233344444321 11111221
Q ss_pred e---------eeEEEEecCCCeEEEeecc-----------CCeEEEeeecccccccc---cccCCCCcE---EEeHHHHH
Q psy682 154 R---------HNCFVTTVDSRFLLACGFW-----------DNSFREPFTTMYLALQE---GKFDHPNRL---FSSISLAW 207 (330)
Q Consensus 154 ~---------~~~~~~spDg~~i~asg~~-----------D~tirl~w~~~~g~l~~---~l~gH~d~V---iaSt~~lW 207 (330)
. ..+++|+|||++|++++.. ++.|++ |++++++..+ ....+.... +...-++|
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV-FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE-EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEE-EECCCccccceeeeccCCCcccceeECCCCcEE
Confidence 1 2578899999997777632 489999 9998865433 222222211 21111122
Q ss_pred hhhccCCCcEEEEcc-cCceeeecCCCCC---------------------------------------------------
Q psy682 208 KNCQRDTSDVKVHTT-FGDLLRSLDPPSG--------------------------------------------------- 235 (330)
Q Consensus 208 ~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~--------------------------------------------------- 235 (330)
.++ +.|.+|+. +|+.++++..+..
T Consensus 163 --~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 163 --VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp --EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred --Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 122 34888875 6888777654320
Q ss_pred ---------------CCCCcEEEeCC-CccEEEEccCCeEEEEeeC-CceeeeccCcccc
Q psy682 236 ---------------FASPESVVMSR-EGVIVVNYERGHIAAFTMN-GNRLRHESHNDNL 278 (330)
Q Consensus 236 ---------------~~~v~~v~fS~-dG~~l~s~~~~~~~~~s~n-G~~las~~~~~dV 278 (330)
...+..++||| ||+.++.+ ++.+..|..+ |+.+........+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~ 297 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTY 297 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCC
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCc
Confidence 00345778889 99988888 7889989764 5555655443333
No 182
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.80 E-value=6.7e-08 Score=90.09 Aligned_cols=111 Identities=7% Similarity=-0.023 Sum_probs=67.4
Q ss_pred EEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----E-Ee---HHHH--------------H-----hhh
Q psy682 158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----F-SS---ISLA--------------W-----KNC 210 (330)
Q Consensus 158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----i-aS---t~~l--------------W-----~~S 210 (330)
.++||||+.|+.+. .++.|++ |++++|+.......+...+ + ++ +..+ | ..+
T Consensus 86 ~~~spdg~~l~~~~-~~~~l~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 86 GFLSPDDDALFYVK-DGRNLMR-VDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp CEECTTSSEEEEEE-TTTEEEE-EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred eEEcCCCCEEEEEe-CCCeEEE-EECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence 45889998855544 6788888 8888777655444444433 0 01 0000 0 114
Q ss_pred ccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCC-CccEEEEcc-------CCeEEEEeeCCceeeec
Q psy682 211 QRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-------RGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 211 gS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~~-------~~~~~~~s~nG~~las~ 272 (330)
++.++.|.+|+..+..++.|..+.. .+..++||| ||+.||... ...|..+..+|..+..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~l~~~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTVILQENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp GCCCEEEEEEETTTCCEEEEEEESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred cCCcceEEEEECCCCceEEeecCCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 5667788888765444556666555 789999999 999888753 22455555555444433
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.78 E-value=9.4e-08 Score=84.70 Aligned_cols=169 Identities=10% Similarity=0.004 Sum_probs=99.5
Q ss_pred cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccce--e--eeeeEEEEecCC
Q psy682 89 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL--R--VRHNCFVTTVDS 164 (330)
Q Consensus 89 ~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~--~--~~~~~~~~spDg 164 (330)
+..|.+|+.++.......... ...+..+.+.+|+.+..+.. .+..+.....+....... . .....+++++||
T Consensus 86 ~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 86 NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADR-GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEG-GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred CCEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEEC-CCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 567888888776544432111 12456788888888443211 112233332221110000 0 123578899999
Q ss_pred CeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee-HHHHHhhhccCCCcEEEEcccCceeeecCC-CCCCCCC
Q psy682 165 RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS-ISLAWKNCQRDTSDVKVHTTFGDLLRSLDP-PSGFASP 239 (330)
Q Consensus 165 ~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~-h~~~~~v 239 (330)
++ +++...++.|.+ |+.++++.......+.... + .. .=.+|- +...++.|.+++.+|+....+.. +.. .+
T Consensus 162 ~l-~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~~~~~~~~~~~~~--~p 236 (270)
T 1rwi_B 162 NV-YVTDTDNNRVVK-LEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGSTTSTVLPFTGLN--TP 236 (270)
T ss_dssp CE-EEEEGGGTEEEE-ECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTCSCCEECCCCSCS--CE
T ss_pred CE-EEEECCCCEEEE-EecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCCCcceeeccCCCC--Cc
Confidence 85 666666889999 9987555433333332222 2 22 113443 56668899999888876655432 223 68
Q ss_pred cEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682 240 ESVVMSREGVIVVNY-ERGHIAAFTMNG 266 (330)
Q Consensus 240 ~~v~fS~dG~~l~s~-~~~~~~~~s~nG 266 (330)
..|+++|||++.++. .++.+..|..+.
T Consensus 237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred eeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 999999999988776 578888887654
No 184
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.71 E-value=7.8e-07 Score=81.71 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=64.9
Q ss_pred eEEEEecCCCeEEEeecc-----CCeEEEeeecccccc------cccccCCCCcEEE-eHHHHHhhhccCCCcEEEEccc
Q psy682 156 NCFVTTVDSRFLLACGFW-----DNSFREPFTTMYLAL------QEGKFDHPNRLFS-SISLAWKNCQRDTSDVKVHTTF 223 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~-----D~tirl~w~~~~g~l------~~~l~gH~d~Via-St~~lW~~SgS~Dgtvkl~~~~ 223 (330)
+.++|+|||+.|+.+.+. .+.|++ |+++.+.+ .....+..+-+.. +.=.+|- +..+| |.+|+.+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv--~~~~g-v~~~~~~ 266 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITA-FAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS--SSGTG-VCVFDSD 266 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEE-EEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE--CCSSE-EEEECTT
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEE-EEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE--ecCCc-EEEECCC
Confidence 568899999988887654 268888 88764322 1111334444432 2223553 33444 8889999
Q ss_pred CceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEE
Q psy682 224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAF 262 (330)
Q Consensus 224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~ 262 (330)
|+++..+..+. .+.+++|+|||+.|.-+..+.+..+
T Consensus 267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 99999988664 4899999999987765544444433
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.70 E-value=2.1e-07 Score=85.32 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=125.4
Q ss_pred CceeEEEeCCCCCc-Ccc--------------eeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceE
Q psy682 28 SSVRSLALSHDQKY-SPM--------------MFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAI 92 (330)
Q Consensus 28 ~~V~svafSpdg~~-~~l--------------~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv 92 (330)
..|++++|+|++.. .++ .....+......+.|+|++.+. +++..++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-----------------~~~~~~~~i 68 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLF-----------------LLDVFEGNI 68 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEE-----------------EEETTTCEE
T ss_pred cccceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEE-----------------EEECCCCEE
Confidence 34677788887665 111 1122334455777788888753 555667789
Q ss_pred EEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCC---CCCcceeccCCCCcc-ce-----eeeeeEEEEec
Q psy682 93 NRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNN---NAPVPKRHLGDNFSQ-KL-----RVRHNCFVTTV 162 (330)
Q Consensus 93 ~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~---~~~~~~~~l~~~~~~-~~-----~~~~~~~~~sp 162 (330)
.+|+++++...... .+. ..+..+.+++|+.+.+++.+. ..++..+...+.... .+ ....+.++++|
T Consensus 69 ~~~d~~~~~~~~~~~~~~----~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~ 144 (333)
T 2dg1_A 69 FKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS 144 (333)
T ss_dssp EEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred EEEeCCCCcEEEEeeCCC----CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC
Confidence 99999876655432 232 356789999999854432221 123433332221111 01 11235788999
Q ss_pred CCCeEEEeecc---CCeEEE-eeecccccccccccC--CCCcE-EEeH-HHHHhhhccCCCcEEEEcc--cCceeee---
Q psy682 163 DSRFLLACGFW---DNSFRE-PFTTMYLALQEGKFD--HPNRL-FSSI-SLAWKNCQRDTSDVKVHTT--FGDLLRS--- 229 (330)
Q Consensus 163 Dg~~i~asg~~---D~tirl-~w~~~~g~l~~~l~g--H~d~V-iaSt-~~lW~~SgS~Dgtvkl~~~--~G~ll~t--- 229 (330)
||++++++... +...+| -++.+++++.....+ ....+ +... -.+|- +.+.++.|.+|+. +|+.+..
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v-~~~~~~~i~~~d~~~~g~~~~~~~~ 223 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV-TETTANRLHRIALEDDGVTIQPFGA 223 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE-EEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEE-EeCCCCeEEEEEecCCCcCcccccc
Confidence 99875544311 123344 044443443321111 11111 1111 11222 4556788888876 5654432
Q ss_pred -----cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCc
Q psy682 230 -----LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHN 275 (330)
Q Consensus 230 -----L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~ 275 (330)
+.++ . .+..+++++||++.++. .++.+..|+++|+.+......
T Consensus 224 ~~~~~~~~~-~--~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~ 272 (333)
T 2dg1_A 224 TIPYYFTGH-E--GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP 272 (333)
T ss_dssp EEEEECCSS-S--EEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred eEEEecCCC-C--CCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence 2332 2 68899999999988876 468899999999988776543
No 186
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.70 E-value=7.5e-08 Score=88.38 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=65.4
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeec--cccccc-----cccc---CCCCcEEE-eHHHHHhhhccCCCcEEEEccc-
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTT--MYLALQ-----EGKF---DHPNRLFS-SISLAWKNCQRDTSDVKVHTTF- 223 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~--~~g~l~-----~~l~---gH~d~Via-St~~lW~~SgS~Dgtvkl~~~~- 223 (330)
+.++++||++.|+.+.+.++.|.+ |++ ++|++. ..+. ++.+-+.. +-=.+|- +...++.|..|+.+
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~-~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv-a~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDA-FDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV-ACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEE-EEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE-EEETTTEEEEECTTT
T ss_pred cceEEcCCCCEEEEecCCCCcEEE-EeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE-EEcCCCEEEEEcCCC
Confidence 678899999998898888899998 876 456542 1111 22233322 2223454 55556789999885
Q ss_pred CceeeecCCCCCCCCCcEEEeC-CCccEEE
Q psy682 224 GDLLRSLDPPSGFASPESVVMS-REGVIVV 252 (330)
Q Consensus 224 G~ll~tL~~h~~~~~v~~v~fS-~dG~~l~ 252 (330)
|++++++..|.. .|.+++|+ ||++.|.
T Consensus 230 G~~~~~i~~p~~--~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 230 GKRLQTVKLPVD--KTTSCCFGGKNYSEMY 257 (297)
T ss_dssp CCEEEEEECSSS--BEEEEEEESGGGCEEE
T ss_pred ceEEEEEECCCC--CceEEEEeCCCCCEEE
Confidence 999999988766 79999998 8988663
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.66 E-value=5.8e-07 Score=92.31 Aligned_cols=203 Identities=11% Similarity=-0.015 Sum_probs=114.4
Q ss_pred cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-ee
Q psy682 50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT 128 (330)
Q Consensus 50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~ 128 (330)
|+..+..+.|||||+.|+++.. -+++.+.+|++|+.+++...+ ..+-..+ ....++++||++ ++
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~------------~~G~~~~~i~v~dl~tg~~~~-~~~~~~~--~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQK------------PNAADEAVLHVIDVDSGEWSK-VDVIEGG--KYATPKWTPDSKGFY 183 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEE------------ETTCSCCEEEEEETTTCCBCS-SCCBSCC--TTCCCEECTTSSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEEC------------CCCCceEEEEEEECCCCCCcC-CcccCcc--cccceEEecCCCEEE
Confidence 3345667777777777654422 355567899999998876541 1121111 125799999999 55
Q ss_pred ccCCCCC-----------CCcceeccCCCCccceee--------eeeEEEEecCCCeEEEeeccC-C--eEEEeeecccc
Q psy682 129 HPTSNNN-----------APVPKRHLGDNFSQKLRV--------RHNCFVTTVDSRFLLACGFWD-N--SFREPFTTMYL 186 (330)
Q Consensus 129 ~~s~~~~-----------~~~~~~~l~~~~~~~~~~--------~~~~~~~spDg~~i~asg~~D-~--tirl~w~~~~g 186 (330)
..+.+.. ..++.+.++..-.+...+ ....+++||||++|+.+...+ . .|.+ |+..++
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~-~~~~~~ 262 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW-KRPGEK 262 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE-ECTTCS
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE-EcCCCC
Confidence 4333221 115566665433211111 124678999999977665433 2 4555 655445
Q ss_pred cccccccCCCCcEE---Ee--HHHHHhhhc---cCCCcEEEEccc-Cce--eeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682 187 ALQEGKFDHPNRLF---SS--ISLAWKNCQ---RDTSDVKVHTTF-GDL--LRSLDPPSGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 187 ~l~~~l~gH~d~Vi---aS--t~~lW~~Sg---S~Dgtvkl~~~~-G~l--l~tL~~h~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
++ ..+..+.+.+. .+ . ++- +. ..++.|.+|+.+ |+. .+.|.+|.....+..++|+ ++++++++.
T Consensus 263 ~~-~~l~~~~~~~~~~~~~~g~--l~~-~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 263 DF-RLLVKGVGAKYEVHAWKDR--FYV-LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp SC-EEEEECSSCCEEEEEETTE--EEE-EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred ce-EEeecCCCceEEEEecCCc--EEE-EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 43 34444444331 11 2 111 22 246788888774 443 3566555321268889999 788888884
Q ss_pred -CCeEE--EEeeCCceeeecc
Q psy682 256 -RGHIA--AFTMNGNRLRHES 273 (330)
Q Consensus 256 -~~~~~--~~s~nG~~las~~ 273 (330)
++... .+..+|+.+..+.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~ 358 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQ 358 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECC
T ss_pred ECCEEEEEEEeCCCCeeEEec
Confidence 55544 4455687666554
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.65 E-value=3e-07 Score=94.55 Aligned_cols=204 Identities=12% Similarity=-0.006 Sum_probs=120.3
Q ss_pred cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eecc
Q psy682 53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHP 130 (330)
Q Consensus 53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~ 130 (330)
.+..+.|||||+.|+++.. -.++...+|++|+.+++...... .+. ....+.++||++ ++..
T Consensus 126 ~~~~~~~SPDg~~la~~~~------------~~G~~~~~i~v~d~~tg~~~~~~~~~~-----~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLS------------ASGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp EEEEEEECTTSSEEEEEEE------------ETTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEECTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEEEc------------CCCCceEEEEEEECCCCCCCcccccCc-----ccceEEEEeCCCEEEEE
Confidence 4677788888887754421 22333458999999877654422 221 245699999998 5543
Q ss_pred CCCCC--------------CCcceeccCCCCccceee--------eeeEEEEecCCCeEEEeecc----CCeEEEeeecc
Q psy682 131 TSNNN--------------APVPKRHLGDNFSQKLRV--------RHNCFVTTVDSRFLLACGFW----DNSFREPFTTM 184 (330)
Q Consensus 131 s~~~~--------------~~~~~~~l~~~~~~~~~~--------~~~~~~~spDg~~i~asg~~----D~tirl~w~~~ 184 (330)
+.+.. ..++.+.++..-.+...+ ....+++||||++|+.+... +..|.+ |+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~-~d~~ 267 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY-CDLQ 267 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE-EEGG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE-EECc
Confidence 33322 114555655432221111 12367899999997766531 567888 9987
Q ss_pred c------cc-ccccccCCCCcE---EEe---HHHHHhhhccCCCcEEEEccc-Cc--eeeecCCCCCCCCCcEEEeCCCc
Q psy682 185 Y------LA-LQEGKFDHPNRL---FSS---ISLAWKNCQRDTSDVKVHTTF-GD--LLRSLDPPSGFASPESVVMSREG 248 (330)
Q Consensus 185 ~------g~-l~~~l~gH~d~V---iaS---t~~lW~~SgS~Dgtvkl~~~~-G~--ll~tL~~h~~~~~v~~v~fS~dG 248 (330)
+ ++ ....+.+|.+.+ +.. .+.+-...+...+.|.+|+.. |+ ..++|.+|.....+..+++++++
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 6 53 355666666654 221 111100011223457777664 33 34677776542257889999999
Q ss_pred cEEEEcc-CC--eEEEEee-CCceeeeccC
Q psy682 249 VIVVNYE-RG--HIAAFTM-NGNRLRHESH 274 (330)
Q Consensus 249 ~~l~s~~-~~--~~~~~s~-nG~~las~~~ 274 (330)
++++++. ++ .|..|.. +|+.+..+..
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECC
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEecCC
Confidence 9999984 44 4666776 7876665543
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=3.1e-08 Score=91.99 Aligned_cols=246 Identities=8% Similarity=0.000 Sum_probs=121.5
Q ss_pred ecccccccceeecCCCc-----eeEEEeCCCCCcCcceeeeec--CccEEEEEeCCCCCeeEeeec----cc-eeccCCc
Q psy682 13 RTFNLALLYAFPSCDSS-----VRSLALSHDQKYSPMMFSTVL--DDVCMSLKFPSNSPICHVTAN----TY-VTLHMPS 80 (330)
Q Consensus 13 ~~~~g~~l~tl~gH~~~-----V~svafSpdg~~~~l~~~~~~--~d~~~~v~Fs~~~~v~~~~~~----~~-~~~~~~~ 80 (330)
+..+|+.+..+..+... +.+++|||||+. +.+.... ...++.+.. ..++...+... .. +.+++++
T Consensus 16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~--l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKK--LLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE--EEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEECTTS
T ss_pred cCCCCcceEEEecCCCCccceeeecCcCCCCCCE--EEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceECCCC
Confidence 66788888888766544 889999999987 1111111 112222221 11222112110 11 3345555
Q ss_pred EEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCC-------------------ccccCCCc-eeccC---CCCCC
Q psy682 81 VVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGN-------------------LPLTLDPI-LTHPT---SNNNA 136 (330)
Q Consensus 81 ~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~-------------------l~fs~D~~-l~~~s---~~~~~ 136 (330)
..++..+.+..|.+|+.+++...... .+.+ .... ..++||+. ++... .+...
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 44455555557999998876644332 1221 1111 46778877 33211 02222
Q ss_pred CcceeccCCCCccceeee---eeEEEEec-CCCeEEEeecc-C----CeEEEeeecccccccccccCCC-C-cE----EE
Q psy682 137 PVPKRHLGDNFSQKLRVR---HNCFVTTV-DSRFLLACGFW-D----NSFREPFTTMYLALQEGKFDHP-N-RL----FS 201 (330)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~---~~~~~~sp-Dg~~i~asg~~-D----~tirl~w~~~~g~l~~~l~gH~-d-~V----ia 201 (330)
.++.+.+...-...+... ...++++| ||+.|+.+... + ..|.+ |+++++++.. +..+. . .+ ++
T Consensus 169 ~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~-~d~~~~~~~~-l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL-VNEDGSNVRK-IKEHAEGESCTHEFWI 246 (396)
T ss_dssp EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE-EETTSCCCEE-SSCCCTTEEEEEEEEC
T ss_pred eEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE-EECCCCceeE-eeccCCCccccceEEC
Confidence 334444322111111111 24678999 88865554421 1 35777 8886555433 33332 2 22 11
Q ss_pred e--HHHHHhh--hccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCC-CccEEEEcc-----------------CCe
Q psy682 202 S--ISLAWKN--CQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-----------------RGH 258 (330)
Q Consensus 202 S--t~~lW~~--SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~~-----------------~~~ 258 (330)
. ..+++.. .+..+++|.+|+.. |+.. .+....+ .. ++||| ||+.++.++ +..
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLENE-EVMVMPP---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCEE-EEEECCS---EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCeE-EeeeCCC---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 1 1111110 12223558889864 5443 3322112 23 89999 999888742 356
Q ss_pred EEEEeeCCceeeec
Q psy682 259 IAAFTMNGNRLRHE 272 (330)
Q Consensus 259 ~~~~s~nG~~las~ 272 (330)
+..|..++..+..+
T Consensus 322 i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 322 LYVLNTKAKSAQKL 335 (396)
T ss_dssp EEEEETTTTBCCEE
T ss_pred EEEEecccCceEEc
Confidence 88888776554443
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.57 E-value=7.7e-07 Score=81.90 Aligned_cols=180 Identities=13% Similarity=0.032 Sum_probs=118.3
Q ss_pred CCcEEEEEcCCcceEEEeCC-CCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCC------CCcceeccCCCCccc
Q psy682 78 MPSVVTVTANHQFAINRWNP-DYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN------APVPKRHLGDNFSQK 150 (330)
Q Consensus 78 ~~~~v~vS~~~~~tv~lW~~-~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~------~~~~~~~l~~~~~~~ 150 (330)
+|..++++++.+..|.+|+. ++..+.+...+.. ..+..+.++|||.+.. +.+.. .+...|++..+ ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~--~~ 76 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAP--AG 76 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECC--TT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCC--CC
Confidence 45556788999999999999 6666666665431 2466799999999654 22211 22233333221 00
Q ss_pred eeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc------CCCCc---E-EEe--HHHHHhhhccCCCcEE
Q psy682 151 LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF------DHPNR---L-FSS--ISLAWKNCQRDTSDVK 218 (330)
Q Consensus 151 ~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~------gH~d~---V-iaS--t~~lW~~SgS~Dgtvk 218 (330)
. ...+..+.|||+++++.+..++.+.. ++. +|+++..+. ++... + +.. .+.+ +.+.++.|.
T Consensus 77 ~--~~~~~~~~~dG~~lv~~~~~~~~v~~-vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv---~~~~~~~v~ 149 (276)
T 3no2_A 77 C--EMQTARILPDGNALVAWCGHPSTILE-VNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV---PLFATSEVR 149 (276)
T ss_dssp C--EEEEEEECTTSCEEEEEESTTEEEEE-ECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE---EETTTTEEE
T ss_pred c--cccccEECCCCCEEEEecCCCCEEEE-EeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE---EecCCCEEE
Confidence 1 22456789999996665422555555 665 476543332 11000 1 111 2222 677899999
Q ss_pred EEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceeeecc
Q psy682 219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES 273 (330)
Q Consensus 219 l~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~ 273 (330)
.++.+|+++.++..+ + .+.++.+.++|.+++.+. .++++.|.++ |+.+-+..
T Consensus 150 ~~d~~G~~~w~~~~~-~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 150 EIAPNGQLLNSVKLS-G--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EECTTSCEEEEEECS-S--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EECCCCCEEEEEECC-C--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 999999999999875 3 578999999999998875 5689999999 99988875
No 191
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.55 E-value=8.4e-07 Score=82.53 Aligned_cols=173 Identities=9% Similarity=-0.049 Sum_probs=107.6
Q ss_pred cccCCCcEEEeeccccc--cccee---------ecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEee
Q psy682 2 SGGDKGIVEVWRTFNLA--LLYAF---------PSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVT 69 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~--~l~tl---------~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~ 69 (330)
+...++.|+.|+.+ |+ .+.++ .++-...++|+|+| +|++ +.......-...+|.++|.++...
T Consensus 107 ~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l----yv~d~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 107 TDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV----FVSDGYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp EETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE----EEEECSSCCEEEEECTTSCEEEEE
T ss_pred EECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeE----EEEeCCCCCeEEEEcCCCCEEEEe
Confidence 44567899999984 55 56666 46777899999999 7877 555431122334566888877654
Q ss_pred e---------------ccceeccCC-cEEEEEcCCcceEEEeCCC-CCCcccCC--CCCCCCCCCCCCccccC------C
Q psy682 70 A---------------NTYVTLHMP-SVVTVTANHQFAINRWNPD-YAASIQSP--SYAETPGSPPGNLPLTL------D 124 (330)
Q Consensus 70 ~---------------~~~~~~~~~-~~v~vS~~~~~tv~lW~~~-~~~~~~~~--~h~~~~~~~~~~l~fs~------D 124 (330)
. ...+.+.++ +.+.|+...+..|++|+++ +..+.+.. ++. ..+..+.|+| |
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~----~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG----RNVFAISYIPGFLFAVN 257 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT----TCEEEEEEETTEEEEEE
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC----CCcceeeecCCEEEEeC
Confidence 3 223566776 7888888889999999998 54444432 332 3455777888 5
Q ss_pred CceeccCCCCCCCcceecc-CCCCccce------eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682 125 PILTHPTSNNNAPVPKRHL-GDNFSQKL------RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA 187 (330)
Q Consensus 125 ~~l~~~s~~~~~~~~~~~l-~~~~~~~~------~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~ 187 (330)
+.+..+ ...+..+..+.. .+.+..++ ......++++||| .|+++...+++|++ |+++ ++
T Consensus 258 g~~~v~-~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~-~~~~-~~ 323 (329)
T 3fvz_A 258 GKPYFG-DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWK-FTLT-EK 323 (329)
T ss_dssp CCCCTT-CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEE-EEEE-EC
T ss_pred CCEEec-cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEE-EeCC-cc
Confidence 542221 111112222221 11111111 0113578899999 56888888999999 9996 44
No 192
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.53 E-value=7.1e-08 Score=99.88 Aligned_cols=133 Identities=10% Similarity=-0.024 Sum_probs=92.1
Q ss_pred eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--------EEEe---HHHHHhhhccCC--------
Q psy682 154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--------LFSS---ISLAWKNCQRDT-------- 214 (330)
Q Consensus 154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--------ViaS---t~~lW~~SgS~D-------- 214 (330)
+..+++++|||+++++ + |++|++ |++.+|+....+.+|... +..| ..++ .++.|
T Consensus 18 ~~~~~~w~~dg~~~~~-~--~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~---~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYK-Q--ENNILV-FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFIL---LEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCEEECSSSEEEEE-E--TTEEEE-EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEE---EEEEEEECSSSCE
T ss_pred cccccEECCCCcEEEE-c--CCcEEE-EECCCCceEEEEechhhhhhcccccceEECCCCCEEE---EEECCeeeEEEcc
Confidence 4457889999988554 4 999999 999999877777777532 1112 1111 23333
Q ss_pred -CcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccc---cccccccccchhh
Q psy682 215 -SDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDN---LQELIPELFFLPE 290 (330)
Q Consensus 215 -gtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~d---VkELipef~~~p~ 290 (330)
+.+.||+..+..++.|.+|.+ .+..++|||||+.||...++.|.++..++.....+..+.. +..-+|+|.|..|
T Consensus 91 ~~~~~~~d~~~~~~~~l~~~~~--~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITEERIPN--NTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEEEETTTTEECCSSCCCT--TEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred ceEEEEEECCCCcEEEcccCCC--cceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 456689886555667888877 8999999999999999999999999987765555543332 2233467777766
Q ss_pred hhccc
Q psy682 291 MLVNS 295 (330)
Q Consensus 291 ~l~n~ 295 (330)
+|-..
T Consensus 169 ~~~~~ 173 (740)
T 4a5s_A 169 VFSAY 173 (740)
T ss_dssp TSSSS
T ss_pred hcCCC
Confidence 54433
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.45 E-value=5.2e-07 Score=93.49 Aligned_cols=175 Identities=9% Similarity=-0.044 Sum_probs=98.8
Q ss_pred CcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCC---CCCcceeccCCC--C-ccceeeee
Q psy682 88 HQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN---NAPVPKRHLGDN--F-SQKLRVRH 155 (330)
Q Consensus 88 ~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~---~~~~~~~~l~~~--~-~~~~~~~~ 155 (330)
....|.+|+..++... ....|. .....+.+||||+ ++..+... ...++.+.+.+. - ...+..+.
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELP----KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL 316 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCT----TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCC----eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence 3455788887544311 111111 1245788999998 44433222 233444444222 1 12222221
Q ss_pred --eEEEEecCCCeEEEeeccC---CeEEEeeecccc--cccccccCCCCcE--EE-e--HHHHHhhhccCCCcEEEEc--
Q psy682 156 --NCFVTTVDSRFLLACGFWD---NSFREPFTTMYL--ALQEGKFDHPNRL--FS-S--ISLAWKNCQRDTSDVKVHT-- 221 (330)
Q Consensus 156 --~~~~~spDg~~i~asg~~D---~tirl~w~~~~g--~l~~~l~gH~d~V--ia-S--t~~lW~~SgS~Dgtvkl~~-- 221 (330)
....++|||+.|+.....+ ..|.+ |+++++ +....+.++.+.+ ++ + .+.+ +.+.||..+||.
T Consensus 317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~-~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~---~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVR-VDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA---SYIHDAKSQVLAFD 392 (741)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEE-EECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE---EEEETTEEEEEEEE
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEE-EeCCCCccccEEEecCCCCeEEEEEEECCEEEE---EEEECCEEEEEEEe
Confidence 1222569999877665432 33677 888764 3443343444433 11 1 2222 788899999984
Q ss_pred ccCceeeecCCC-CCCCCCcEEEeCCCccEEE-Ecc----CCeEEEEeeCCceeeec
Q psy682 222 TFGDLLRSLDPP-SGFASPESVVMSREGVIVV-NYE----RGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 222 ~~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~-s~~----~~~~~~~s~nG~~las~ 272 (330)
.+|+.++.|..+ .+ .|..++++|||+.|+ +++ .+++..|.+++..+..+
T Consensus 393 ~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 393 LDGKPAGAVSLPGIG--SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp TTSCEEEECBCSSSC--EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred CCCCceeeccCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 469888888764 44 789999999998665 332 46788898876554444
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.45 E-value=3.1e-05 Score=68.67 Aligned_cols=244 Identities=15% Similarity=0.080 Sum_probs=136.9
Q ss_pred CCCcEEEeecccccccc-eeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee------ccceec
Q psy682 5 DKGIVEVWRTFNLALLY-AFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA------NTYVTL 76 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l~-tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~------~~~~~~ 76 (330)
.++.|..|+.. |+... .+..+...+.+++++|+|.+ ..... ...+ .+|.+++.+..+.. ...+.+
T Consensus 34 ~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l----~v~~~~~~~i--~~~~~~g~~~~~~~~~~~~~~~~i~~ 106 (299)
T 2z2n_A 34 KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEV----WFTENAANKI--GRITKKGIIKEYTLPNPDSAPYGITE 106 (299)
T ss_dssp TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCE----EEEETTTTEE--EEECTTSCEEEEECSSTTCCEEEEEE
T ss_pred CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCE----EEeCCCCCeE--EEECCCCcEEEEeCCCcCCCceeeEE
Confidence 36789999886 55332 22346688999999999987 33322 2222 23444444432221 111334
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccc-e---
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK-L--- 151 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~-~--- 151 (330)
.+++.+-++......|..|++++..... .+.+ ...+..+.+.+|+.+-.+.. ....+.+....+.+... +
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~ 181 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITDDGKIREYELPNK----GSYPSFITLGSDNALWFTEN-QNNAIGRITESGDITEFKIPTP 181 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCCEEEEECSST----TCCEEEEEECTTSCEEEEET-TTTEEEEECTTCCEEEEECSST
T ss_pred CCCCCEEEEecCCceEEEECCCCCEEEecCCCC----CCCCceEEEcCCCCEEEEeC-CCCEEEEEcCCCcEEEeeCCCC
Confidence 4555556666667778999884432211 1111 13456788899988443221 12223333321111100 0
Q ss_pred eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc-ccCCCCcE--E-E-eHHHHHhhhccCCCcEEEEcccCce
Q psy682 152 RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-KFDHPNRL--F-S-SISLAWKNCQRDTSDVKVHTTFGDL 226 (330)
Q Consensus 152 ~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V--i-a-St~~lW~~SgS~Dgtvkl~~~~G~l 226 (330)
......+++.+||++ +++...++.|.+ |+. +|+.... +..+...+ + . ..=.+|- +...++.|..++.+|++
T Consensus 182 ~~~~~~i~~~~~g~l-~v~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~~g~~ 257 (299)
T 2z2n_A 182 ASGPVGITKGNDDAL-WFVEIIGNKIGR-ITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTSNNII 257 (299)
T ss_dssp TCCEEEEEECTTSSE-EEEETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEETTTEE
T ss_pred CCcceeEEECCCCCE-EEEccCCceEEE-ECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECCCCce
Confidence 012347889999986 555556788988 888 6765432 22222333 2 1 2223453 44457788888877865
Q ss_pred eee-cCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCc
Q psy682 227 LRS-LDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN 267 (330)
Q Consensus 227 l~t-L~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~ 267 (330)
..- +..+.. .+.++++ ++|++.++...+.+..|.++.+
T Consensus 258 ~~~~~~~~~~--~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 258 EEYPIQIKSA--EPHGICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp EEEECSSSSC--CEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred EEEeCCCCCC--ccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 433 333334 7999999 9999999876777887776654
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.42 E-value=1.4e-06 Score=88.93 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=73.5
Q ss_pred EEEEecCCCeEEEeeccCCeEEEeeecccccccccc-----cCCCCcE--EEe--HHHHHhhhccCCCcEEEEcc-c---
Q psy682 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK-----FDHPNRL--FSS--ISLAWKNCQRDTSDVKVHTT-F--- 223 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l-----~gH~d~V--iaS--t~~lW~~SgS~Dgtvkl~~~-~--- 223 (330)
.+.|+|||++++++...+++|.+ +++.+++++..+ ..|..+- +.. --.+|-.+.-.|++|-+++. .
T Consensus 346 d~~~~pdgr~~~va~~~sn~V~V-iD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 346 DGGLDGSHRYFITAANARNKLVV-IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEE-EETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred CceECCCCCEEEEEeCCCCeEEE-EECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 56899999999888888999999 999999876543 2365322 322 12345423334688999865 3
Q ss_pred ----CceeeecCCCCCCCCCcEEEeCCCccEEEEcc--------CCeEEEEeeC
Q psy682 224 ----GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--------RGHIAAFTMN 265 (330)
Q Consensus 224 ----G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--------~~~~~~~s~n 265 (330)
-+.++++..... ....|.++|||+.|.-.. .+++..|.++
T Consensus 425 ~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 425 PDNAWKILDSFPALGG--GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp TTTBTSEEEEEECSCS--CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred ccccCEEEEEEecCCC--CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 467888886533 446689999998775532 3488888865
No 196
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.41 E-value=8.9e-07 Score=82.64 Aligned_cols=155 Identities=8% Similarity=-0.003 Sum_probs=87.0
Q ss_pred EEEeCCCCCCcccCCCCCC-CCCCCCCCccccCCCceeccCCCC-----CCCcceeccCCCCcccee--eeeeEEEEecC
Q psy682 92 INRWNPDYAASIQSPSYAE-TPGSPPGNLPLTLDPILTHPTSNN-----NAPVPKRHLGDNFSQKLR--VRHNCFVTTVD 163 (330)
Q Consensus 92 v~lW~~~~~~~~~~~~h~~-~~~~~~~~l~fs~D~~l~~~s~~~-----~~~~~~~~l~~~~~~~~~--~~~~~~~~spD 163 (330)
|.+|+.+++.......... .....++.+.+++||.+..++.+. ...+++.. .+.+..-.. ...+.++++||
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPD 189 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTT
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCC
Confidence 6777765554332211100 001234568888999854422211 12233332 221111001 12357889999
Q ss_pred CCeEEEeeccCCeEEEeeecc--cc-cccc-----cccCC---CCcEEE-eHHHHHhhhccCCCcEEEEcccCceeeecC
Q psy682 164 SRFLLACGFWDNSFREPFTTM--YL-ALQE-----GKFDH---PNRLFS-SISLAWKNCQRDTSDVKVHTTFGDLLRSLD 231 (330)
Q Consensus 164 g~~i~asg~~D~tirl~w~~~--~g-~l~~-----~l~gH---~d~Via-St~~lW~~SgS~Dgtvkl~~~~G~ll~tL~ 231 (330)
|+.|+.+.+.++.|.+ |+++ +| ++.. .+.+. .+.+.. +.=.+|- +...++.|.+|+.+|++++++.
T Consensus 190 g~~lyv~~~~~~~I~~-~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv-a~~~~~~v~~~d~~g~~~~~i~ 267 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMR-VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN-ARWGEGAVDRYDTDGNHIARYE 267 (326)
T ss_dssp SCEEEEEETTTCEEEE-EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE-EEETTTEEEEECTTCCEEEEEE
T ss_pred CCEEEEEECCCCEEEE-EEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE-EEeCCCEEEEECCCCCEEEEEE
Confidence 9988888777889998 9875 56 4321 11111 111211 1223443 3344678888988999999988
Q ss_pred CCCCCCCCcEEEeC-CCccEE
Q psy682 232 PPSGFASPESVVMS-REGVIV 251 (330)
Q Consensus 232 ~h~~~~~v~~v~fS-~dG~~l 251 (330)
.+.. .|.+++|+ ||+..|
T Consensus 268 ~~~~--~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 268 VPGK--QTTCPAFIGPDASRL 286 (326)
T ss_dssp CSCS--BEEEEEEESTTSCEE
T ss_pred CCCC--CcEEEEEecCCCCEE
Confidence 7766 79999998 887755
No 197
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.36 E-value=5e-06 Score=77.93 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=81.6
Q ss_pred CcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCcee-ccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCC
Q psy682 88 HQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSR 165 (330)
Q Consensus 88 ~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~-~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~ 165 (330)
.+.+|.+|+++.+.... ..+|.....+ .+.|++|++.. +...++ ....+ ....+.++++|||+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~---~~~~~~~g~~~~~~~~~g--~~~~~----------~~~~~gia~s~dg~ 207 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPE---DIDLVIDGVPVQIGQPDG--TVIRP----------HLGVNGIVLDAENE 207 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCC---SCCCEETTEECBEECTTS--CEECC----------CCCEEEEEECTTSC
T ss_pred CCCeEEEEECCCCCEEEEecCCCccccc---ccceeECCEEEEeccCCC--ceece----------ecccceeEeccCCC
Confidence 67788999987554333 3344321111 25667777632 111111 11001 11346788999999
Q ss_pred eEEEeeccCCeEEEeeecccccc----------ccc-----ccCCCCcEEEe-HHHHHhhhccCCCcEEEEcc-cCceee
Q psy682 166 FLLACGFWDNSFREPFTTMYLAL----------QEG-----KFDHPNRLFSS-ISLAWKNCQRDTSDVKVHTT-FGDLLR 228 (330)
Q Consensus 166 ~i~asg~~D~tirl~w~~~~g~l----------~~~-----l~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~ 228 (330)
+|+.+....+ ++ |.++...+ ... -.++.+-+..+ .=.+|- +.+.++.|.+|+. +|++..
T Consensus 208 ~ly~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v-a~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 208 WLYLSPMHST--SM-YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYV-GDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp EEEEEESSCS--EE-EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEE-EEGGGTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCC--eE-EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEE-EccCCCeEEEEECCCCCEEE
Confidence 9888764333 56 66543211 111 12345555332 222333 5666789999998 888644
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVNY 254 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s~ 254 (330)
....+.. ..|..|+|++||+++++.
T Consensus 284 ~~~~~~~-~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 284 LVTDEKL-SWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp EEECGGG-SCEEEEEECTTSCEEEEE
T ss_pred EEECCce-ecCCeeEECCCCcEEEEe
Confidence 4433211 268999999999988774
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.34 E-value=4.9e-06 Score=86.18 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=111.7
Q ss_pred ccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682 52 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHP 130 (330)
Q Consensus 52 d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~ 130 (330)
..+..+.|||||+.|+++.. -.++...+|++|+.++++......+. .....+.++|| + ++..
T Consensus 163 ~~~~~~~~SPDG~~la~~~~------------~~G~e~~~i~v~dl~tg~~~~~~~~~----~~~~~~~wspD-~~l~~~ 225 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQ------------DGGSDWRTVKFVGVADGKPLADELKW----VKFSGLAWLGN-DALLYS 225 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEE------------ETTCSEEEEEEEETTTCCEEEEEEEE----EESCCCEESTT-SEEEEE
T ss_pred EEEEeEEECCCCCEEEEEEc------------CCCCceEEEEEEECCCCCCCCccCCC----ceeccEEEECC-CEEEEE
Confidence 35667788888887644411 11222367999999887654432111 11246899999 7 5543
Q ss_pred CCCCC------------CCcceeccCCCCccceee--------eeeEEEEecCCCeEEEeecc----CCeEEEeeecccc
Q psy682 131 TSNNN------------APVPKRHLGDNFSQKLRV--------RHNCFVTTVDSRFLLACGFW----DNSFREPFTTMYL 186 (330)
Q Consensus 131 s~~~~------------~~~~~~~l~~~~~~~~~~--------~~~~~~~spDg~~i~asg~~----D~tirl~w~~~~g 186 (330)
+.+.. ..++.+.++....+...+ ....+.+||||++|+.++.. ...|.+ |+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~-~d~~~~ 304 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHV-ARVTNG 304 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEE-EEEETT
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEE-EECCCC
Confidence 33322 124455655433211111 12467799999997766532 237888 998766
Q ss_pred --cccccccCCCCcEE---Ee---HHHHHhhhccCCCcEEEEcccC--ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-
Q psy682 187 --ALQEGKFDHPNRLF---SS---ISLAWKNCQRDTSDVKVHTTFG--DLLRSLDPPSGFASPESVVMSREGVIVVNYE- 255 (330)
Q Consensus 187 --~l~~~l~gH~d~Vi---aS---t~~lW~~SgS~Dgtvkl~~~~G--~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~- 255 (330)
+....+..+.+.+. .. .+.+....+..++.|.+|+..+ .-.+.|.++.. ..+..++++ ++++++++.
T Consensus 305 ~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~l~~~~~~-~~~lv~~~~~ 382 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK-DNLESVGIA-GNRLFASYIH 382 (741)
T ss_dssp EECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS-SEEEEEEEE-BTEEEEEEEE
T ss_pred CCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC-CeEEEEEEE-CCEEEEEEEE
Confidence 41445555554431 11 1111000122244577777654 34455544433 157788888 777888874
Q ss_pred CCe--EEEEeeCCceeeecc
Q psy682 256 RGH--IAAFTMNGNRLRHES 273 (330)
Q Consensus 256 ~~~--~~~~s~nG~~las~~ 273 (330)
++. |..+..+|+.+..+.
T Consensus 383 dg~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 383 DAKSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp TTEEEEEEEETTSCEEEECB
T ss_pred CCEEEEEEEeCCCCceeecc
Confidence 554 444455687766654
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.25 E-value=1.2e-05 Score=78.05 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=83.6
Q ss_pred CCCCCccccC-CCceeccCCCCCCCcceeccCCCCccce-------eeeee---EEEEecCCCeEEEeeccCCeEEEeee
Q psy682 114 SPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFSQKL-------RVRHN---CFVTTVDSRFLLACGFWDNSFREPFT 182 (330)
Q Consensus 114 ~~~~~l~fs~-D~~l~~~s~~~~~~~~~~~l~~~~~~~~-------~~~~~---~~~~spDg~~i~asg~~D~tirl~w~ 182 (330)
..+..+++.| |+.+.. ++.+..+.+..........+ ....+ .++|+|++..|+.+-...+.|+. |+
T Consensus 219 ~~p~~iav~p~~g~lyv--~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~-~~ 295 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYF--VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK-IT 295 (409)
T ss_dssp SCCCBCEECTTSSEEEE--ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE-EC
T ss_pred CCcEEEEEeCCCCeEEE--EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE-Ee
Confidence 3567799999 677554 22222333333322111111 00112 78899976677888888899998 98
Q ss_pred cccccccccccCCC------------------CcE-EEeHHHHHhhhcc-CCCcEEEEc-ccCceeeecCCCCC------
Q psy682 183 TMYLALQEGKFDHP------------------NRL-FSSISLAWKNCQR-DTSDVKVHT-TFGDLLRSLDPPSG------ 235 (330)
Q Consensus 183 ~~~g~l~~~l~gH~------------------d~V-iaSt~~lW~~SgS-~Dgtvkl~~-~~G~ll~tL~~h~~------ 235 (330)
.+ |+ ...+.|+. .-+ +.+.=.+|- +-+ .++.|+.++ .+|+ +.++.++.+
T Consensus 296 ~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv-ad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~ 371 (409)
T 3hrp_A 296 PD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI-VDGFKGYCLRKLDILDGY-VSTVAGQVDVASQID 371 (409)
T ss_dssp TT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE-EETTTTCEEEEEETTTTE-EEEEEECTTCBSCCC
T ss_pred cC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE-EeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCC
Confidence 85 54 22333332 112 222111332 556 678899998 5675 556655410
Q ss_pred -------CCCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682 236 -------FASPESVVMSREGVIVVNY-ERGHIAAFTM 264 (330)
Q Consensus 236 -------~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~ 264 (330)
...|..|+++|||.++++- ..+++..+++
T Consensus 372 g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 372 GTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1268999999999988876 4666666554
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.20 E-value=0.00019 Score=63.56 Aligned_cols=227 Identities=12% Similarity=0.058 Sum_probs=128.7
Q ss_pred eecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee------ccceeccCCcEEEEEcCCcceEEEe
Q psy682 23 FPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA------NTYVTLHMPSVVTVTANHQFAINRW 95 (330)
Q Consensus 23 l~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~------~~~~~~~~~~~v~vS~~~~~tv~lW 95 (330)
++.+...+++++++|||++ ..... ...+ ..|.+++++..+.. ...+.+.+++.+-++....+.|..|
T Consensus 10 ~~~~~~~~~~i~~d~~g~l----~v~~~~~~~v--~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKV----WITQHKANMI--SCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI 83 (299)
T ss_dssp CCSSSCCEEEEEECTTSCE----EEEETTTTEE--EEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCCcCCCccceEECCCCCE----EEEecCCCcE--EEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence 3556678999999999987 32221 1222 22333333332221 1112344455555666667778999
Q ss_pred CCCCCCcccC--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee-----eeeeEEEEecCCCeEE
Q psy682 96 NPDYAASIQS--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR-----VRHNCFVTTVDSRFLL 168 (330)
Q Consensus 96 ~~~~~~~~~~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~i~ 168 (330)
++++. .... +.. ...+..+.+.+|+.+..+... ...+......+.+. .+. .....+++.+||+. +
T Consensus 84 ~~~g~-~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~~g~~~-~~~~~~~~~~~~~i~~~~~g~l-~ 155 (299)
T 2z2n_A 84 TKKGI-IKEYTLPNP----DSAPYGITEGPNGDIWFTEMN-GNRIGRITDDGKIR-EYELPNKGSYPSFITLGSDNAL-W 155 (299)
T ss_dssp CTTSC-EEEEECSST----TCCEEEEEECTTSCEEEEETT-TTEEEEECTTCCEE-EEECSSTTCCEEEEEECTTSCE-E
T ss_pred CCCCc-EEEEeCCCc----CCCceeeEECCCCCEEEEecC-CceEEEECCCCCEE-EecCCCCCCCCceEEEcCCCCE-E
Confidence 98643 2221 111 134567888999985442221 22233332211110 010 12357888999976 5
Q ss_pred EeeccCCeEEEeeeccccccccc-ccCCCCcE--E-E-eHHHHHhhhccCCCcEEEEcccCceeee-cCCCCCCCCCcEE
Q psy682 169 ACGFWDNSFREPFTTMYLALQEG-KFDHPNRL--F-S-SISLAWKNCQRDTSDVKVHTTFGDLLRS-LDPPSGFASPESV 242 (330)
Q Consensus 169 asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V--i-a-St~~lW~~SgS~Dgtvkl~~~~G~ll~t-L~~h~~~~~v~~v 242 (330)
.+.+.++.|.. |+. +|++... +..+...+ + . ..=.+|- +...++.|..++.+|+.... +..+.. .+..|
T Consensus 156 v~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~i 230 (299)
T 2z2n_A 156 FTENQNNAIGR-ITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITTSGEITEFKIPTPNA--RPHAI 230 (299)
T ss_dssp EEETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECTTCCEEEEECSSTTC--CEEEE
T ss_pred EEeCCCCEEEE-EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECCCCcEEEEECCCCCC--CceeE
Confidence 55656788888 888 6776532 22222222 2 1 1223443 44557788888778876543 333334 79999
Q ss_pred EeCCCccEEEEc-cCCeEEEEeeCCce
Q psy682 243 VMSREGVIVVNY-ERGHIAAFTMNGNR 268 (330)
Q Consensus 243 ~fS~dG~~l~s~-~~~~~~~~s~nG~~ 268 (330)
+++++|++.++. ..+.+..|.++|+.
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~g~~ 257 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSNNII 257 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETTTEE
T ss_pred EECCCCCEEEeccCCceEEEECCCCce
Confidence 999999988876 57889999988863
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.19 E-value=1.1e-05 Score=83.26 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=117.8
Q ss_pred ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-e
Q psy682 49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-L 127 (330)
Q Consensus 49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l 127 (330)
++...+..+.|||||+.|+++. ..+++...+|++|+.++++.....-.. .....++++ |++ +
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~------------~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l 188 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSL------------SLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGF 188 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEE------------ECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEE
T ss_pred CCcEEEEEEEECCCCCEEEEEE------------ecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEE
Confidence 3444677888999999875541 123455588999999877643321110 013468899 998 5
Q ss_pred eccCCCCC-----------CCcceeccCCCCccceee---------eeeEEEEecCCCeEEEeeccC---CeEEEeeecc
Q psy682 128 THPTSNNN-----------APVPKRHLGDNFSQKLRV---------RHNCFVTTVDSRFLLACGFWD---NSFREPFTTM 184 (330)
Q Consensus 128 ~~~s~~~~-----------~~~~~~~l~~~~~~~~~~---------~~~~~~~spDg~~i~asg~~D---~tirl~w~~~ 184 (330)
+..+.+.. ..++.+.++....+...+ ....+++||||++|+.+...+ +.|.+ ++++
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~-~d~~ 267 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV-KDLS 267 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE-EETT
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE-EECC
Confidence 54333321 224556665543221211 123567899999976655432 46788 8886
Q ss_pred ccc-ccccccCCCCcE---EEe---HHHHHhhhccCC---CcEEEEccc-Cce--eeecCCCCCCCCCcEEEeCCCccEE
Q psy682 185 YLA-LQEGKFDHPNRL---FSS---ISLAWKNCQRDT---SDVKVHTTF-GDL--LRSLDPPSGFASPESVVMSREGVIV 251 (330)
Q Consensus 185 ~g~-l~~~l~gH~d~V---iaS---t~~lW~~SgS~D---gtvkl~~~~-G~l--l~tL~~h~~~~~v~~v~fS~dG~~l 251 (330)
+++ ....+..+.+.. +.+ .+.+ ....| +.|..++.+ |+. .++|.+|.. .+. .||++|+.|
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~l 340 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSLVDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYL 340 (693)
T ss_dssp STTCCCEEEECSSSSCEEEEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEE
T ss_pred CCCCceEEEeCCCCceEEEEeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEE
Confidence 653 334555555543 211 1111 22233 456666654 333 467888776 444 999999877
Q ss_pred EEcc--CC--eEEEEeeCCceeeecc
Q psy682 252 VNYE--RG--HIAAFTMNGNRLRHES 273 (330)
Q Consensus 252 ~s~~--~~--~~~~~s~nG~~las~~ 273 (330)
+... ++ .|..|..+|+.+..+.
T Consensus 341 v~~~~~~g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred EEEEEECCeeEEEEEECCCCeeEEee
Confidence 7652 33 6888999998776654
No 202
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.17 E-value=5.4e-06 Score=76.00 Aligned_cols=186 Identities=8% Similarity=-0.022 Sum_probs=99.1
Q ss_pred cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC--CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eec
Q psy682 53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN--HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTH 129 (330)
Q Consensus 53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~--~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~ 129 (330)
.+..++|||||+.|+.... .+ ....|.+|+.+++.......+. . +..+.++||++ ++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~--------------~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~ 120 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRA--------------NEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLI 120 (347)
T ss_dssp SCEEEEECTTSSEEEEEEE--------------ETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEE
T ss_pred cCCCeEECCCCCEEEEEEe--------------ccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEE
Confidence 3566788888887633311 11 2334667777666555443332 1 55789999998 554
Q ss_pred cCCCC-------------------------CCCcceeccCCCCc-cceee-eeeEEEEecCCCeEEEeeccCC-------
Q psy682 130 PTSNN-------------------------NAPVPKRHLGDNFS-QKLRV-RHNCFVTTVDSRFLLACGFWDN------- 175 (330)
Q Consensus 130 ~s~~~-------------------------~~~~~~~~l~~~~~-~~~~~-~~~~~~~spDg~~i~asg~~D~------- 175 (330)
.+... ...++.+.+...-. +.+.. ....++++||| +++++ ..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~-~~~~~~~~~~~ 198 (347)
T 2gop_A 121 VGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNV-PHREIIPQYFK 198 (347)
T ss_dssp EEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEE-ECCCSSCCSSC
T ss_pred EEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEE-ecccccccccc
Confidence 32210 11223333321100 11211 23467899999 65554 3442
Q ss_pred eEEEeeecccccccccccCCCCcE--EEe--HHHHHhhhccC--------CCcEEEEcccCceeeecCCCCCCCCCcE-E
Q psy682 176 SFREPFTTMYLALQEGKFDHPNRL--FSS--ISLAWKNCQRD--------TSDVKVHTTFGDLLRSLDPPSGFASPES-V 242 (330)
Q Consensus 176 tirl~w~~~~g~l~~~l~gH~d~V--iaS--t~~lW~~SgS~--------Dgtvkl~~~~G~ll~tL~~h~~~~~v~~-v 242 (330)
..+| |..++|++. .+..+ ..+ ++. ...+ .++. ...|.+|+ +|+..+.+.+|.. .+.. +
T Consensus 199 ~~~l-~~~d~~~~~-~l~~~-~~~~~~spdg~~l~---~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~--~~~~~~ 269 (347)
T 2gop_A 199 FWDI-YIWEDGKEE-KMFEK-VSFYAVDSDGERIL---LYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDR--GVGQAK 269 (347)
T ss_dssp CEEE-EEEETTEEE-EEEEE-ESEEEEEECSSCEE---EEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCS--EEEEEE
T ss_pred cccE-EEeCCCceE-EeccC-cceeeECCCCCEEE---EEEccccCCccccceEEEEC-CCceEeccccCCc--ccCCcc
Confidence 5577 766655543 33333 222 211 1111 1221 23566667 7776655556655 7886 9
Q ss_pred EeCCCccEEEEc-cCCeEEEEeeC-Cceeee
Q psy682 243 VMSREGVIVVNY-ERGHIAAFTMN-GNRLRH 271 (330)
Q Consensus 243 ~fS~dG~~l~s~-~~~~~~~~s~n-G~~las 271 (330)
+|| || +++++ .++...+| .+ |+....
T Consensus 270 ~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 270 IKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp EET-TE-EEEEEEETTEEEEE-EESSSEEEE
T ss_pred EEc-Cc-EEEEEecCCcEEEE-EcCCceEEE
Confidence 999 99 77776 46777777 65 654433
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.13 E-value=6.3e-05 Score=66.26 Aligned_cols=176 Identities=10% Similarity=0.040 Sum_probs=98.5
Q ss_pred EcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee----eeeeEEE
Q psy682 85 TANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR----VRHNCFV 159 (330)
Q Consensus 85 S~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~----~~~~~~~ 159 (330)
+...++.|..|+.++....... .+ ...+..+.+.+|+.+..+.. ...+......+.....+. .....++
T Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~~~p~~i~ 114 (270)
T 1rwi_B 41 SEGMYGRVVKLATGSTGTTVLPFNG----LYQPQGLAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGLNYPEGLA 114 (270)
T ss_dssp ECSSSCEEEEECC-----EECCCCS----CCSCCCEEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSCSSEEEEE
T ss_pred ccCCCCcEEEecCCCcccceEeeCC----cCCcceeEECCCCCEEEEcC--CCEEEEEeCCCceEeeeecCCcCCCcceE
Confidence 4455667888887654433222 11 13466799999998554222 223333333222111111 1235788
Q ss_pred EecCCCeEEEeeccCCeEEEeeecccccccccccC---CCCcE-EEeHHHHHhhhccCCCcEEEEcccCceeeecC-CCC
Q psy682 160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD---HPNRL-FSSISLAWKNCQRDTSDVKVHTTFGDLLRSLD-PPS 234 (330)
Q Consensus 160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g---H~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~-~h~ 234 (330)
+.+||+. +++...++.|.+ |+..+.+....... ....+ +...=.+|- +...++.|.+++.+|....... .+.
T Consensus 115 ~~~~g~l-~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (270)
T 1rwi_B 115 VDTQGAV-YVADRGNNRVVK-LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV-TDTDNNRVVKLEAESNNQVVLPFTDI 191 (270)
T ss_dssp ECTTCCE-EEEEGGGTEEEE-ECTTCCSCEECCCCSCCSCCCEEECTTCCEEE-EEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred ECCCCCE-EEEECCCCEEEE-EECCCceeEeeccccCCCceeEEEeCCCCEEE-EECCCCEEEEEecCCCceEeecccCC
Confidence 9999986 666556888988 86543332211111 11222 222112343 4445678888887765554432 222
Q ss_pred CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeee
Q psy682 235 GFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRH 271 (330)
Q Consensus 235 ~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las 271 (330)
. .+..|+++++|.+.++. ..+.+..|.++|+....
T Consensus 192 ~--~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 192 T--APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp C--SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE
T ss_pred C--CceEEEECCCCCEEEEECCCCcEEEEcCCCCccee
Confidence 3 78999999999888876 47789999999875543
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.13 E-value=0.00063 Score=60.14 Aligned_cols=240 Identities=14% Similarity=0.106 Sum_probs=134.8
Q ss_pred CCCcEEEeecccccccc-eeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeeec------cceec
Q psy682 5 DKGIVEVWRTFNLALLY-AFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTAN------TYVTL 76 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l~-tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~~------~~~~~ 76 (330)
.++.|..|+.. |+... .+..+...+.+++++++|++ +.... ...+ .+|.+++.+..+... ....+
T Consensus 39 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l----~v~~~~~~~v--~~~d~~g~~~~~~~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 39 KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDI----WFTENGANKI--GKLSKKGGFTEYPLPQPDSGPYGITE 111 (300)
T ss_dssp TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE----EEEETTTTEE--EEECTTSCEEEEECSSTTCCEEEEEE
T ss_pred CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCE----EEEecCCCeE--EEECCCCCeEEecCCCCCCCCccceE
Confidence 46788889886 55433 23455578999999999987 33322 2222 234555554322211 11234
Q ss_pred cCCcEEEEEcCCcceEEEeCCCCCCcccC--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee--
Q psy682 77 HMPSVVTVTANHQFAINRWNPDYAASIQS--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR-- 152 (330)
Q Consensus 77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-- 152 (330)
.+++.+-++......|..+++++ ..... +.. ...+..+.+.+|+.+-.+.. ....+.+....+.+.. +.
T Consensus 112 ~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~----~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~g~~~~-~~~~ 184 (300)
T 2qc5_A 112 GLNGDIWFTQLNGDRIGKLTADG-TIYEYDLPNK----GSYPAFITLGSDNALWFTEN-QNNSIGRITNTGKLEE-YPLP 184 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTTS-CEEEEECSST----TCCEEEEEECTTSSEEEEET-TTTEEEEECTTCCEEE-EECS
T ss_pred CCCCCEEEEccCCCeEEEECCCC-CEEEccCCCC----CCCceeEEECCCCCEEEEec-CCCeEEEECCCCcEEE-eeCC
Confidence 44555556666667789999873 33222 111 13456788889998443222 1222333322211110 11
Q ss_pred ---eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc-ccCCCCcE--E--EeHHHHHhhhccCCCcEEEEcccC
Q psy682 153 ---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-KFDHPNRL--F--SSISLAWKNCQRDTSDVKVHTTFG 224 (330)
Q Consensus 153 ---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V--i--aSt~~lW~~SgS~Dgtvkl~~~~G 224 (330)
.....+++.+||+. +.+....+.|.+ |+. +|+.... +..+...+ + ...=.+|- +...++.|..++.+|
T Consensus 185 ~~~~~~~~i~~d~~g~l-~v~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 185 TNAAAPVGITSGNDGAL-WFVEIMGNKIGR-ITT-TGEISEYDIPTPNARPHAITAGKNSEIWF-TEWGANQIGRITNDN 260 (300)
T ss_dssp STTCCEEEEEECTTSSE-EEEETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEECTTS
T ss_pred CCCCCcceEEECCCCCE-EEEccCCCEEEE-EcC-CCcEEEEECCCCCCCceEEEECCCCCEEE-eccCCCeEEEECCCC
Confidence 12357788999976 555555677888 887 4665432 22222322 2 12223444 444567888888788
Q ss_pred ceeee-cCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682 225 DLLRS-LDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 265 (330)
Q Consensus 225 ~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n 265 (330)
++..- +..... .|.+|+++++|++.++... .+..|.++
T Consensus 261 ~~~~~~~~~~~~--~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 261 TIQEYQLQTENA--EPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp CEEEEECCSTTC--CCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred cEEEEECCccCC--ccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 76533 332333 7999999999998888764 77777653
No 205
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.09 E-value=1.3e-05 Score=75.96 Aligned_cols=38 Identities=5% Similarity=-0.047 Sum_probs=31.8
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecccc--cccccccCC
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL--ALQEGKFDH 195 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH 195 (330)
...++|+|||++|+++. + ++|.+ |+.++| ++++++..+
T Consensus 307 p~~ia~spdg~~l~v~n-~-~~v~v-~D~~t~~l~~~~~i~~~ 346 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLD-G-GNVNV-YDISQPEPKLLRTIEGA 346 (361)
T ss_dssp CCEEEEETTTTEEEEEC-S-SCEEE-EECSSSSCEEEEEETTS
T ss_pred eeEEEECCCCCEEEEeC-C-CeEEE-EECCCCcceeeEEeccC
Confidence 46889999999988776 4 99999 999999 888776444
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.09 E-value=1.3e-05 Score=82.64 Aligned_cols=230 Identities=9% Similarity=-0.026 Sum_probs=120.8
Q ss_pred cccCCCcEEEeecccccccceeecCCCce--eEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSV--RSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP 79 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V--~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~ 79 (330)
+|+++.+|++||+.+|+.+.. +..++ .+++|| ||+. +++...... .+
T Consensus 150 ~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~------------------------l~y~~~~~~---~~ 198 (693)
T 3iuj_A 150 AGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEG------------------------FFYSSYDKP---DG 198 (693)
T ss_dssp SSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTE------------------------EEEEESSCC---C-
T ss_pred CCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCE------------------------EEEEEecCc---cc
Confidence 355567899999988875432 22222 456666 6665 222221100 00
Q ss_pred cEEEEEcCCcceEEEeCCCCCCc-----ccCCC-CCCCCCCCCCCccccCCCcee-ccC-CC-CCCCcceeccCCCC--c
Q psy682 80 SVVTVTANHQFAINRWNPDYAAS-----IQSPS-YAETPGSPPGNLPLTLDPILT-HPT-SN-NNAPVPKRHLGDNF--S 148 (330)
Q Consensus 80 ~~v~vS~~~~~tv~lW~~~~~~~-----~~~~~-h~~~~~~~~~~l~fs~D~~l~-~~s-~~-~~~~~~~~~l~~~~--~ 148 (330)
+..+ ..++...|++|+...... ..... |. .....+.+|||+++. ..+ .+ ....++.+.+..+- .
T Consensus 199 ~~~~-~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 199 SELS-ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH----HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGC----CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cccc-ccCCCcEEEEEECCCCcccceEEEecCCCCC----eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 0111 123455688888754431 11111 21 123467899999933 222 22 22244555543321 1
Q ss_pred cceeeee--eEEEEecCCCeEEEeeccC---CeEEEeeecccccc--cccccCCCCcEE--Ee---HHHHHhhhccCCC-
Q psy682 149 QKLRVRH--NCFVTTVDSRFLLACGFWD---NSFREPFTTMYLAL--QEGKFDHPNRLF--SS---ISLAWKNCQRDTS- 215 (330)
Q Consensus 149 ~~~~~~~--~~~~~spDg~~i~asg~~D---~tirl~w~~~~g~l--~~~l~gH~d~Vi--aS---t~~lW~~SgS~Dg- 215 (330)
..+..+. ....+++||+.|+.....| ..|.. ++++++.. .+.+..|.+.++ +. .+.+ +...||
T Consensus 274 ~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~-~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~---~~~~~g~ 349 (693)
T 3iuj_A 274 LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVT-VDAANPGPAHWRDLIPERQQVLTVHSGSGYLFA---EYMVDAT 349 (693)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE-EETTSCCGGGCEEEECCCSSCEEEEEETTEEEE---EEEETTE
T ss_pred EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEE-EeCCCCCccccEEEecCCCCEEEEEEECCEEEE---EEEECCe
Confidence 2222222 1223678888777666555 34555 77766544 345666766553 11 1211 334455
Q ss_pred -cEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cC----CeEEEEeeCCceeeec
Q psy682 216 -DVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ER----GHIAAFTMNGNRLRHE 272 (330)
Q Consensus 216 -tvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~----~~~~~~s~nG~~las~ 272 (330)
.|++|+.+|+.++.+.-+.. ..+..++++|||..|+.. +. ..+..|.+++..+..+
T Consensus 350 ~~l~~~d~~g~~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 350 ARVEQFDYEGKRVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp EEEEEECTTSCEEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred eEEEEEECCCCeeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 56678888888888764332 267788889998866554 33 6788888866544433
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.06 E-value=4.4e-05 Score=74.06 Aligned_cols=191 Identities=9% Similarity=0.022 Sum_probs=110.8
Q ss_pred cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccC
Q psy682 53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPT 131 (330)
Q Consensus 53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s 131 (330)
....++|++++.+. ++......|++|++++..+.+..+.. .... +.+++|+. +.++.
T Consensus 132 ~P~~la~d~~g~ly-----------------v~d~~~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d 189 (409)
T 3hrp_A 132 YMWGIAAVGNNTVL-----------------AYQRDDPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIG 189 (409)
T ss_dssp CEEEEEECSTTEEE-----------------EEETTTTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEB
T ss_pred CceEEEEeCCCCEE-----------------EEecCCCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEe
Confidence 45677788888753 55556678999999877666554322 2234 89999998 33322
Q ss_pred CCCCCCcceeccCCCCc-cce-------eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc----ccC---CC
Q psy682 132 SNNNAPVPKRHLGDNFS-QKL-------RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG----KFD---HP 196 (330)
Q Consensus 132 ~~~~~~~~~~~l~~~~~-~~~-------~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~----l~g---H~ 196 (330)
.++...++.....+.+. ..+ ..+..+++++|++..|+++ ..++.|+. |+.++++.... ..+ ..
T Consensus 190 ~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~-d~~~~I~~-~d~~~~~~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFV-DSNKNFGR-FNVKTQEVTLIKQLELSGSLGTN 267 (409)
T ss_dssp SSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEE-CTTCEEEE-EETTTCCEEEEEECCCCSCCCCS
T ss_pred cCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEE-ECCCcEEE-EECCCCCEEEEecccccCCCCCC
Confidence 22221233222211111 011 1123578899955566774 46888988 99875543211 111 11
Q ss_pred ---CcEEEe-HHHHHhhhccCCCcEEEEcccCceeeecCCCC---C----------CCCCcEEEeCCCccEEEEc--cCC
Q psy682 197 ---NRLFSS-ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPS---G----------FASPESVVMSREGVIVVNY--ERG 257 (330)
Q Consensus 197 ---d~ViaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~---~----------~~~v~~v~fS~dG~~l~s~--~~~ 257 (330)
+..+.. --.+|- +-+.++.|+.++.+|+ +.++.++. + ...+..|+|+|||++.++- ..+
T Consensus 268 P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~ 345 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYM-SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY 345 (409)
T ss_dssp SCCEEEEETTTTEEEE-EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred ccccEEEeCCCCEEEE-EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence 222332 112222 5566788888888887 44454432 0 1258999999999977774 467
Q ss_pred eEEEEe-eCCcee
Q psy682 258 HIAAFT-MNGNRL 269 (330)
Q Consensus 258 ~~~~~s-~nG~~l 269 (330)
.+..|+ .+|+..
T Consensus 346 ~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 346 CLRKLDILDGYVS 358 (409)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCEEE
Confidence 899999 778643
No 208
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.04 E-value=1e-05 Score=75.42 Aligned_cols=172 Identities=8% Similarity=0.049 Sum_probs=98.2
Q ss_pred EEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceee--------
Q psy682 84 VTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRV-------- 153 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~-------- 153 (330)
++...+++|.+|+...... .+.++. ..+..+.+++|+++-++.. .+..+....+.. ....++..
T Consensus 58 v~~~~~~~v~viD~~t~~~~~~i~~~-----~~p~~i~~~~~g~lyv~~~-~~~~v~~iD~~t~~~~~~i~~g~~~~~~~ 131 (328)
T 3dsm_A 58 IVVNNSHVIFAIDINTFKEVGRITGF-----TSPRYIHFLSDEKAYVTQI-WDYRIFIINPKTYEITGYIECPDMDMESG 131 (328)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECC-----SSEEEEEEEETTEEEEEEB-SCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred EEEcCCCEEEEEECcccEEEEEcCCC-----CCCcEEEEeCCCeEEEEEC-CCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence 3344566788888875554 333221 3466788888888443220 122233332211 11111211
Q ss_pred eeeEEEEecCCCeEEEeec-cCCeEEEeeecccccccccccCCC--CcE-EEeHHHHHhhhccC----------CCcEEE
Q psy682 154 RHNCFVTTVDSRFLLACGF-WDNSFREPFTTMYLALQEGKFDHP--NRL-FSSISLAWKNCQRD----------TSDVKV 219 (330)
Q Consensus 154 ~~~~~~~spDg~~i~asg~-~D~tirl~w~~~~g~l~~~l~gH~--d~V-iaSt~~lW~~SgS~----------Dgtvkl 219 (330)
....+++ +++.++++.+ .+++|.+ ++.+++++++.+.... ..+ +...=++|- +... .++|.+
T Consensus 132 ~p~~i~~--~~~~lyv~~~~~~~~v~v-iD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v-~~~~~~~~~~~~~~~~~v~~ 207 (328)
T 3dsm_A 132 STEQMVQ--YGKYVYVNCWSYQNRILK-IDTETDKVVDELTIGIQPTSLVMDKYNKMWT-ITDGGYEGSPYGYEAPSLYR 207 (328)
T ss_dssp BCCCEEE--ETTEEEEEECTTCCEEEE-EETTTTEEEEEEECSSCBCCCEECTTSEEEE-EBCCBCTTCSSCBCCCEEEE
T ss_pred CcceEEE--ECCEEEEEcCCCCCEEEE-EECCCCeEEEEEEcCCCccceEEcCCCCEEE-EECCCccCCccccCCceEEE
Confidence 2234555 4556687775 4899999 9998888766554221 112 222122333 2222 267888
Q ss_pred Ecc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCc
Q psy682 220 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN 267 (330)
Q Consensus 220 ~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~ 267 (330)
++. +|++++++.-+.+ ..++.++|+|||+.|..++. .+..|.+...
T Consensus 208 id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~ 254 (328)
T 3dsm_A 208 IDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN-DIWRMPVEAD 254 (328)
T ss_dssp EETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS-SEEEEETTCS
T ss_pred EECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc-EEEEEECCCC
Confidence 865 6888888764433 27899999999998876655 7777776543
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.91 E-value=7.2e-05 Score=67.23 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=97.9
Q ss_pred cCCcceEEEeCCCCCCcccCCC-----CCCCCCCCCCCccccCC-CceeccCCCCCCCcceeccCCCCccc-------ee
Q psy682 86 ANHQFAINRWNPDYAASIQSPS-----YAETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKRHLGDNFSQK-------LR 152 (330)
Q Consensus 86 ~~~~~tv~lW~~~~~~~~~~~~-----h~~~~~~~~~~l~fs~D-~~l~~~s~~~~~~~~~~~l~~~~~~~-------~~ 152 (330)
...++.|.+|+++.+....... +. ..+..+.+++| +.+..++.+ .++......+.+... ..
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~----~~~~~i~~~~~~g~l~v~~~~--~~l~~~d~~g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYG----GIPAGCQCDRDANQLFVADMR--LGLLVVQTDGTFEEIAKKDSEGRR 115 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEE----CCEEEEEECSSSSEEEEEETT--TEEEEEETTSCEEECCSBCTTSCB
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCC----CCCceEEEecCCCcEEEEECC--CCEEEEeCCCCEEEEEeccCCCcc
Confidence 3445678888865554333211 21 34567888898 874432222 233333322111000 01
Q ss_pred -eeeeEEEEecCCCeEEEeeccC---------------CeEEEeeeccccccccccc--CCCCcE-EE----eHH-HHHh
Q psy682 153 -VRHNCFVTTVDSRFLLACGFWD---------------NSFREPFTTMYLALQEGKF--DHPNRL-FS----SIS-LAWK 208 (330)
Q Consensus 153 -~~~~~~~~spDg~~i~asg~~D---------------~tirl~w~~~~g~l~~~l~--gH~d~V-ia----St~-~lW~ 208 (330)
...+++++.+||++.+++ ..+ +.|.. |+.+ |++..... .....+ +. ..- .+|-
T Consensus 116 ~~~~~~i~~d~~g~l~v~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v 192 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITA-PAGEVAPADYTRSMQEKFGSIYC-FTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp CBCCCEEEECTTSCEEEEE-CBCBCTTSCCCBTTSSSCEEEEE-ECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEE
T ss_pred ccCCcCEEECCCCCEEEEe-cCcccccccccccccCCCCeEEE-ECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEE
Confidence 123578899999875544 334 34554 5554 55432211 111111 23 210 2232
Q ss_pred hhccCCCcEEEEcc--cCc-----eeeecCCCC-CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-Cceeeecc
Q psy682 209 NCQRDTSDVKVHTT--FGD-----LLRSLDPPS-GFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES 273 (330)
Q Consensus 209 ~SgS~Dgtvkl~~~--~G~-----ll~tL~~h~-~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~ 273 (330)
+.+.++.|.+|+. +|+ .+..+.++. . .+..+++++||++.++. ..+.+..|.++ |+.+....
T Consensus 193 -~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 193 -AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG--GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp -EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC--EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred -EECCCCeEEEEECCCCCccccceEEEECCCCCCC--CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence 4566788888874 465 344555554 4 68999999999999886 57789999998 88766554
No 210
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.85 E-value=0.00015 Score=65.59 Aligned_cols=244 Identities=8% Similarity=-0.017 Sum_probs=136.4
Q ss_pred ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee-----ccceecc
Q psy682 3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA-----NTYVTLH 77 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~-----~~~~~~~ 77 (330)
|+.++.|..|+ .+|+.+..+..+...+.++++.++|.+ +.. ..+ ..+|.+++..+.... ...+.+.
T Consensus 36 ~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l----~v~-t~~---l~~~d~~g~~~~~~~~~~~~~~~~~~~ 106 (330)
T 3hxj_A 36 GSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTI----YFG-SDK---VYAINPDGTEKWRFDTKKAIVSDFTIF 106 (330)
T ss_dssp SSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEE----CCS-SCE---EEEECCCGGGGGGSCC-----CCEEEE
T ss_pred EcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcE----EEe-cCc---EEEECCCCcEEEEEECCCCcccCceEE
Confidence 45678888899 788888777777778889999888877 222 122 334455554321110 0011222
Q ss_pred CCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceee---e
Q psy682 78 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV---R 154 (330)
Q Consensus 78 ~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~---~ 154 (330)
...+. + ++.++.+..++.++.......... ....++.+.+|+.+..++.+ .++......+........ .
T Consensus 107 ~~~l~-v-~t~~~~l~~~d~~g~~~~~~~~~~----~~~~~~~~~~~g~l~vgt~~--~~l~~~d~~g~~~~~~~~~~~~ 178 (330)
T 3hxj_A 107 EDILY-V-TSMDGHLYAINTDGTEKWRFKTKK----AIYATPIVSEDGTIYVGSND--NYLYAINPDGTEKWRFKTNDAI 178 (330)
T ss_dssp TTEEE-E-ECTTSEEEEECTTSCEEEEEECSS----CCCSCCEECTTSCEEEECTT--SEEEEECTTSCEEEEEECSSCC
T ss_pred CCEEE-E-EecCCEEEEEcCCCCEEEEEcCCC----ceeeeeEEcCCCEEEEEcCC--CEEEEECCCCCEeEEEecCCCc
Confidence 22333 2 234556888888743332222221 23445666667875543321 222222221111000110 1
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEcccCceeeec
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTTFGDLLRSL 230 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL 230 (330)
..+.++.++|...+++ +.+.. ++ .+|+.+-........+ +...=.+| -|+.++.+..++.+|+.+..+
T Consensus 179 ~~~~~~d~~g~l~v~t----~~l~~-~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~--v~t~~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS----DKVYA-IN-PDGTEKWNFYAGYWTVTRPAISEDGTIY--VTSLDGHLYAINPDGTEKWRF 250 (330)
T ss_dssp CSCCEECTTCCEEEES----SSEEE-EC-TTSCEEEEECCSSCCCSCCEECTTSCEE--EEETTTEEEEECTTSCEEEEE
T ss_pred eeeeEEcCCCEEEEEe----CEEEE-EC-CCCcEEEEEccCCcceeceEECCCCeEE--EEcCCCeEEEECCCCCEeEEe
Confidence 1345566788764433 66666 77 4565543333222222 11111334 355667777777889888877
Q ss_pred CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeecc
Q psy682 231 DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES 273 (330)
Q Consensus 231 ~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~ 273 (330)
..+.. .+.++.+.++|.+.+...++.+..|.++|+.+....
T Consensus 251 ~~~~~--~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~ 291 (330)
T 3hxj_A 251 KTGKR--IESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFE 291 (330)
T ss_dssp ECSSC--CCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEE
T ss_pred eCCCC--ccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEE
Confidence 76554 567788888999998888889999999998876654
No 211
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.85 E-value=1.9e-05 Score=75.36 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=87.6
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV 81 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~ 81 (330)
+|+.||.|+.||..+|+.+.+++. +.+.+..+.++|++
T Consensus 14 ~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~---------------------------------------- 51 (369)
T 2hz6_A 14 VSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPA---------------------------------------- 51 (369)
T ss_dssp EEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CC----------------------------------------
T ss_pred EEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCE----------------------------------------
Confidence 567899999999999999988876 45555545444433
Q ss_pred EEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCc-cccCCCceeccCC-------CCCCCcceeccCCCCcccee
Q psy682 82 VTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNL-PLTLDPILTHPTS-------NNNAPVPKRHLGDNFSQKLR 152 (330)
Q Consensus 82 v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l-~fs~D~~l~~~s~-------~~~~~~~~~~l~~~~~~~~~ 152 (330)
.+.++.++.|..|+.. +..+.....+.. ....+- .+..|+.+.+++. +..++..+|++..
T Consensus 52 -~v~~s~dg~l~a~d~~tG~~~w~~~~~~~---~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~------- 120 (369)
T 2hz6_A 52 -FLPDPNDGSLYTLGSKNNEGLTKLPFTIP---ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS------- 120 (369)
T ss_dssp -EEECTTTCCEEEC-----CCSEECSCCHH---HHHTTCSCC-----CCCCEEEEEEEEECCC-----------------
T ss_pred -EEEeCCCCEEEEEECCCCceeeeeeccCc---cccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-------
Confidence 2444566667777764 332222221110 000001 1112333322111 1112222222211
Q ss_pred eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcEEEe-H---HHHHhhhccCCCcEEEEcc-cCc
Q psy682 153 VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRLFSS-I---SLAWKNCQRDTSDVKVHTT-FGD 225 (330)
Q Consensus 153 ~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~ViaS-t---~~lW~~SgS~Dgtvkl~~~-~G~ 225 (330)
. ....++|++..++++ +.|++|+. |+.++|+++-.+.. +...++.. . -.++ .++.||.|..|+. +|+
T Consensus 121 -~-~~~~~~p~~~~v~~~-~~dg~v~a-~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~--~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 121 -A-FADSLSPSTSLLYLG-RTEYTITM-YDTKTRELRWNATYFDYAASLPEDDVDYKMSHF--VSNGDGLVVTVDSESGD 194 (369)
T ss_dssp --------------EEEE-EEEEEEEC-CCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEE--EEETSCEEEEECTTTCC
T ss_pred -C-CcccccccCCEEEEE-ecCCEEEE-EECCCCCEEEeEecccccCccccCCccccceEE--EECCCCEEEEEECCCCc
Confidence 1 123467788886665 57999999 99988987544321 11111111 0 0011 4678999999976 799
Q ss_pred eeeecCCCCCCCCCcEEEeCCCccE
Q psy682 226 LLRSLDPPSGFASPESVVMSREGVI 250 (330)
Q Consensus 226 ll~tL~~h~~~~~v~~v~fS~dG~~ 250 (330)
++-+.+-... .+...++++||.+
T Consensus 195 ~~W~~~~~~p--v~~~~~~~~dg~~ 217 (369)
T 2hz6_A 195 VLWIQNYASP--VVAFYVWQREGLR 217 (369)
T ss_dssp EEEEEECSSC--EEEEEECTTSSCE
T ss_pred EEEEecCCCc--eEEEEEecCCceE
Confidence 9888764322 3456678889875
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.79 E-value=8.6e-05 Score=69.41 Aligned_cols=81 Identities=7% Similarity=-0.114 Sum_probs=53.4
Q ss_pred eEEEEecCCCeEEEeec---cCCeEEEeeecccccccccccCCCCcE-----EEe-HHHHHhhhccCCCcEEEEcccCce
Q psy682 156 NCFVTTVDSRFLLACGF---WDNSFREPFTTMYLALQEGKFDHPNRL-----FSS-ISLAWKNCQRDTSDVKVHTTFGDL 226 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~---~D~tirl~w~~~~g~l~~~l~gH~d~V-----iaS-t~~lW~~SgS~Dgtvkl~~~~G~l 226 (330)
+.++++|++..++.+.+ .++.|.+ |+.++|++.+.+.+|.... +.. -..++ +++.||+++.|.
T Consensus 123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v-~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~--~~~~~g~~~~~~----- 194 (343)
T 2qe8_A 123 NDLAVDLIHNFVYISDPAPDDKAALIR-VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQ--IGQPDGTVIRPH----- 194 (343)
T ss_dssp CEEEEETTTTEEEEEECCSGGGCEEEE-EETTTCCEEEECTTCTTTSCCSCCCEETTEECB--EECTTSCEECCC-----
T ss_pred ceEEEecCCCEEEEEcCccCCCCeEEE-EECCCCCEEEEecCCCcccccccceeECCEEEE--eccCCCceecee-----
Confidence 67889987667777776 7899999 9998898877776664311 110 00000 234555554442
Q ss_pred eeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682 227 LRSLDPPSGFASPESVVMSREGVIVVNY 254 (330)
Q Consensus 227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~ 254 (330)
. .++.|+|||||+.|..+
T Consensus 195 --------~--~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 195 --------L--GVNGIVLDAENEWLYLS 212 (343)
T ss_dssp --------C--CEEEEEECTTSCEEEEE
T ss_pred --------c--ccceeEeccCCCEEEEE
Confidence 1 47899999999877765
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.77 E-value=0.0033 Score=55.43 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=126.5
Q ss_pred ecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee------ccceeccCCcEEEEEcCCcceEEEeC
Q psy682 24 PSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA------NTYVTLHMPSVVTVTANHQFAINRWN 96 (330)
Q Consensus 24 ~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~------~~~~~~~~~~~v~vS~~~~~tv~lW~ 96 (330)
+......++|++++||++ +.... ...+ ..|.+++.+..+.. ...+.+.+++.+-++......|..++
T Consensus 16 ~~~~~~p~~i~~d~~g~l----~v~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKV----WFTQHKANKI--SSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp SSTTCCEEEEEECTTSCE----EEEETTTTEE--EEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCCCcceeeECCCCCE----EEEcCCCCeE--EEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 455678899999999887 33221 2222 22334444433221 11123444454556666667789999
Q ss_pred CCCCCcccC--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccce-----eeeeeEEEEecCCCeEEE
Q psy682 97 PDYAASIQS--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL-----RVRHNCFVTTVDSRFLLA 169 (330)
Q Consensus 97 ~~~~~~~~~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~spDg~~i~a 169 (330)
+++ ..... +... ..+..+.+.+|+.+-.+..+ ...+.+....+.+. .+ ......+++.+||+. +.
T Consensus 90 ~~g-~~~~~~~~~~~----~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~~g~~~-~~~~~~~~~~~~~i~~d~~g~l-~v 161 (300)
T 2qc5_A 90 KKG-GFTEYPLPQPD----SGPYGITEGLNGDIWFTQLN-GDRIGKLTADGTIY-EYDLPNKGSYPAFITLGSDNAL-WF 161 (300)
T ss_dssp TTS-CEEEEECSSTT----CCEEEEEECSTTCEEEEETT-TTEEEEECTTSCEE-EEECSSTTCCEEEEEECTTSSE-EE
T ss_pred CCC-CeEEecCCCCC----CCCccceECCCCCEEEEccC-CCeEEEECCCCCEE-EccCCCCCCCceeEEECCCCCE-EE
Confidence 873 33222 1111 34567888889885442221 12233332211111 01 012357888999985 66
Q ss_pred eeccCCeEEEeeeccccccccccc-CCCCcE--E-E-eHHHHHhhhccCCCcEEEEcccCceeee-cCCCCCCCCCcEEE
Q psy682 170 CGFWDNSFREPFTTMYLALQEGKF-DHPNRL--F-S-SISLAWKNCQRDTSDVKVHTTFGDLLRS-LDPPSGFASPESVV 243 (330)
Q Consensus 170 sg~~D~tirl~w~~~~g~l~~~l~-gH~d~V--i-a-St~~lW~~SgS~Dgtvkl~~~~G~ll~t-L~~h~~~~~v~~v~ 243 (330)
+.+.++.|.. ++. +|++..... ++...+ + . ..=.+|- +....+.|..++.+|+.... +..+.. .+..|+
T Consensus 162 ~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~i~ 236 (300)
T 2qc5_A 162 TENQNNSIGR-ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITTTGEISEYDIPTPNA--RPHAIT 236 (300)
T ss_dssp EETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECTTCCEEEEECSSTTC--CEEEEE
T ss_pred EecCCCeEEE-ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcCCCcEEEEECCCCCC--CceEEE
Confidence 6656778888 887 566543211 122222 1 1 1223443 44455678888778877654 333333 789999
Q ss_pred eCCCccEEEEc-cCCeEEEEeeCCcee
Q psy682 244 MSREGVIVVNY-ERGHIAAFTMNGNRL 269 (330)
Q Consensus 244 fS~dG~~l~s~-~~~~~~~~s~nG~~l 269 (330)
+.++|++.++. ..+.+..|.++|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~g~~~ 263 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITNDNTIQ 263 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred ECCCCCEEEeccCCCeEEEECCCCcEE
Confidence 99999988776 468899999887644
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.74 E-value=0.001 Score=63.71 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=37.2
Q ss_pred CcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCcc-EEEEc--cCCeEEEEeeC-Cceeee
Q psy682 215 SDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTMN-GNRLRH 271 (330)
Q Consensus 215 gtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~--~~~~~~~~s~n-G~~las 271 (330)
++|-+.+. +++.++++... . .+..++|||||+ .++.+ .++.+..+... ++.+++
T Consensus 298 ~~V~VID~~t~~vv~~i~~g-~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLG-H--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEECCCCEEEEEEECC-C--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35555544 68888888542 2 589999999999 66665 36788888654 555555
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.67 E-value=9.3e-05 Score=72.25 Aligned_cols=76 Identities=9% Similarity=-0.009 Sum_probs=53.7
Q ss_pred EEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhh----hccCCCcEEEEcccCce---eeec------C---
Q psy682 168 LACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKN----CQRDTSDVKVHTTFGDL---LRSL------D--- 231 (330)
Q Consensus 168 ~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~----SgS~Dgtvkl~~~~G~l---l~tL------~--- 231 (330)
+++ ..|+++.+ |++.++++.+ +...| +...|.. .|..||+|++|+.+|.. .+++ .
T Consensus 140 av~-~~dG~L~v-~dl~~~~~~~----~~~~V---s~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 140 VIL-NSVNDLSA-LDLRTKSTKQ----LAQNV---TSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP 210 (388)
T ss_dssp EEE-ETTSEEEE-EETTTCCEEE----EEESE---EEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred EEE-ECCCCEEE-EEccCCcccc----ccCCc---eEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence 444 57999999 9998776653 22222 1111221 68899999999887766 5677 2
Q ss_pred CCCCCCCCcEEEeCCCccEEEEc
Q psy682 232 PPSGFASPESVVMSREGVIVVNY 254 (330)
Q Consensus 232 ~h~~~~~v~~v~fS~dG~~l~s~ 254 (330)
+|.. .|.+|.+.++++++|++
T Consensus 211 ~~~~--~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 211 VEEY--SPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TTTS--EEEEEEESSSSEEEEEE
T ss_pred CCCe--eEEEEEEecCCeEEEEE
Confidence 3544 89999999999999997
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.64 E-value=0.00048 Score=62.71 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=96.9
Q ss_pred EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CCCccce--------eee
Q psy682 84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQKL--------RVR 154 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~~~~~~--------~~~ 154 (330)
++......|++|++++....... . ...+..+.+++|+.+.++. ..++...... +.+ +.+ ..+
T Consensus 29 ~~d~~~~~i~~~d~~~~~~~~~~-~----~~~~~~i~~~~dG~l~v~~---~~~l~~~d~~~g~~-~~~~~~~~~~~~~~ 99 (297)
T 3g4e_A 29 FVDIPAKKVCRWDSFTKQVQRVT-M----DAPVSSVALRQSGGYVATI---GTKFCALNWKEQSA-VVLATVDNDKKNNR 99 (297)
T ss_dssp EEETTTTEEEEEETTTCCEEEEE-C----SSCEEEEEEBTTSSEEEEE---TTEEEEEETTTTEE-EEEEECCTTCSSEE
T ss_pred EEECCCCEEEEEECCCCcEEEEe-C----CCceEEEEECCCCCEEEEE---CCeEEEEECCCCcE-EEEEecCCCCCCCC
Confidence 44455566777777655432221 1 1245678888888855422 2233333321 111 001 122
Q ss_pred eeEEEEecCCCeEEEeecc--------CCeEEEeeeccc-ccccccccCC---CCcEEEe----HHHHHhhhccCCCcEE
Q psy682 155 HNCFVTTVDSRFLLACGFW--------DNSFREPFTTMY-LALQEGKFDH---PNRLFSS----ISLAWKNCQRDTSDVK 218 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~--------D~tirl~w~~~~-g~l~~~l~gH---~d~ViaS----t~~lW~~SgS~Dgtvk 218 (330)
.+.+++.|||++.+++-.. ...-+| |.++. |++.. +..+ ..-+..+ ++.+ +.+.++.|.
T Consensus 100 ~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l-~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv---~~~~~~~i~ 174 (297)
T 3g4e_A 100 FNDGKVDPAGRYFAGTMAEETAPAVLERHQGAL-YSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY---IDSLSYSVD 174 (297)
T ss_dssp EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEE-EEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE---EEGGGTEEE
T ss_pred CCCEEECCCCCEEEecCCcccccccccCCCcEE-EEEECCCCEEE-EeeccccccceEEcCCCCEEEE---ecCCCCcEE
Confidence 4678899999975544321 133466 66542 33322 1111 1111111 1111 455567788
Q ss_pred EEcc---cCce-----eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccCc
Q psy682 219 VHTT---FGDL-----LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 219 l~~~---~G~l-----l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~~ 275 (330)
+++. +|.+ +..+..+.+ .+..+++.+||.+.++. ..+.+..|+++ |+.+......
T Consensus 175 ~~~~d~~~G~~~~~~~~~~~~~~~~--~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 175 AFDYDLQTGQISNRRSVYKLEKEEQ--IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEECTTTCCEEEEEEEEECCGGGC--EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEeccCCCCcccCcEEEEECCCCCC--CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 7753 4544 334443334 78999999999988886 56789999997 9999887654
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.56 E-value=0.00018 Score=70.27 Aligned_cols=137 Identities=9% Similarity=0.036 Sum_probs=88.2
Q ss_pred CCCCCccccCCCceeccCCCCCCCcceeccCCC----------Ccc----ceeeeeeEEEEecCCCeEEEeeccCCeEEE
Q psy682 114 SPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----------FSQ----KLRVRHNCFVTTVDSRFLLACGFWDNSFRE 179 (330)
Q Consensus 114 ~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~----------~~~----~~~~~~~~~~~spDg~~i~asg~~D~tirl 179 (330)
..++.|+++++..+.. +++.+++..+.+... +.. .+.. ...++| |+++|+++ .++.|++
T Consensus 38 ~~~nlLais~~~gll~--a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~--~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFV--AASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS--TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEE--EEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE--ESSEEEE
T ss_pred ccccEEEEcCCCCEEE--EeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE--cCCcEEE
Confidence 3577899999988544 223334433332111 111 1112 356677 99997776 7899999
Q ss_pred eeecccccccccccCCCCcEEE--e---HHHHHhhhccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCCCccEEEE
Q psy682 180 PFTTMYLALQEGKFDHPNRLFS--S---ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVN 253 (330)
Q Consensus 180 ~w~~~~g~l~~~l~gH~d~Via--S---t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s 253 (330)
|++.+......+..|...|.. . .+ + .++.||++.+|+.. |++.. + .. .|.++++||+| +++.
T Consensus 111 -~dv~sl~~~~~~~~~~~~v~~i~~~~p~~-a---v~~~dG~L~v~dl~~~~~~~-~---~~--~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 111 -LDLEELSEFRTVTSFEKPVFQLKNVNNTL-V---ILNSVNDLSALDLRTKSTKQ-L---AQ--NVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp -EESSSTTCEEEEEECSSCEEEEEECSSEE-E---EEETTSEEEEEETTTCCEEE-E---EE--SEEEEEECSSE-EEEE
T ss_pred -EEchhhhccCccceeecceeeEEecCCCE-E---EEECCCCEEEEEccCCcccc-c---cC--CceEEEEcCCc-eEEE
Confidence 998654433345555555521 1 21 1 57899999999874 66543 3 23 79999999999 4444
Q ss_pred ccCCeEEEEeeCCcee
Q psy682 254 YERGHIAAFTMNGNRL 269 (330)
Q Consensus 254 ~~~~~~~~~s~nG~~l 269 (330)
+.+++++.|+++|..+
T Consensus 179 ~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEM 194 (388)
T ss_dssp ETTSCEEEEEEETTEE
T ss_pred EcCCcEEEEcCCCccc
Confidence 4689999999999884
No 218
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.53 E-value=0.00045 Score=70.36 Aligned_cols=186 Identities=10% Similarity=0.095 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CC--Cccceee
Q psy682 78 MPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DN--FSQKLRV 153 (330)
Q Consensus 78 ~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~--~~~~~~~ 153 (330)
+...+.|+...+++|.+++.+...+.. .+.. ..+..+.||||++++-.+ +.+..+....+. +. ...++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~-~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEE-cCCCeEEEEECCCCCCcEeEEEec
Confidence 345778888899999999998765443 3221 134579999999943222 222334444432 11 1112221
Q ss_pred --eeeEEEEe----cCCCeEEEeeccCCeEEEeeecccccccccccC----------CCC-cE---EEe-HHHHHhhhcc
Q psy682 154 --RHNCFVTT----VDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----------HPN-RL---FSS-ISLAWKNCQR 212 (330)
Q Consensus 154 --~~~~~~~s----pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----------H~d-~V---iaS-t~~lW~~SgS 212 (330)
....++|| |||++++++.++++++.+ ++..++++++++.- |.. +| .+| --..|-++-.
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V-iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVI-MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEE-EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEE-EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 12578899 799999999999999999 99988887665431 223 23 222 0000111334
Q ss_pred CCCcEEEEccc-Cc-e-eeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEe-eCCceeeecc
Q psy682 213 DTSDVKVHTTF-GD-L-LRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFT-MNGNRLRHES 273 (330)
Q Consensus 213 ~Dgtvkl~~~~-G~-l-l~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s-~nG~~las~~ 273 (330)
.+|+|.+.+.. .+ + +.++. ... .+..+.|+|||+.+..+ ..+.+..+. ..|++++...
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~-~~~--~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEIS-AER--FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEE-CCS--SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCCCccceeeeee-ccc--cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 56777666542 11 1 22221 112 56788999999987655 466676664 4566555553
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.51 E-value=0.00068 Score=61.85 Aligned_cols=181 Identities=16% Similarity=0.188 Sum_probs=89.8
Q ss_pred EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcc---ceee----eee
Q psy682 84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ---KLRV----RHN 156 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~---~~~~----~~~ 156 (330)
++....+.|.+|+.++. ......+. ..+..+.+.+|+++.++..+ ...+.+....+.+.. .... ..+
T Consensus 61 ~~d~~~~~i~~~~~~g~-~~~~~~~~----~~~~gl~~d~dG~l~v~~~~-~~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 61 WSDLVGRRVLGWREDGT-VDVLLDAT----AFTNGNAVDAQQRLVHCEHG-RRAITRSDADGQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp EEETTTTEEEEEETTSC-EEEEEESC----SCEEEEEECTTSCEEEEETT-TTEEEEECTTSCEEEEECEETTEECSCCC
T ss_pred EEECCCCEEEEEeCCCC-EEEEeCCC----CccceeeECCCCCEEEEECC-CCEEEEECCCCCEEEEEeccCCCccCCCC
Confidence 44555566777776433 22222221 23456788888885542221 122222222111100 0000 124
Q ss_pred EEEEecCCCeEEEe---ecc-------------CCeEEEeeecccccccccc-cCCCCcE-EEe-HHHHHhhhccC----
Q psy682 157 CFVTTVDSRFLLAC---GFW-------------DNSFREPFTTMYLALQEGK-FDHPNRL-FSS-ISLAWKNCQRD---- 213 (330)
Q Consensus 157 ~~~~spDg~~i~as---g~~-------------D~tirl~w~~~~g~l~~~l-~gH~d~V-iaS-t~~lW~~SgS~---- 213 (330)
.+++.|||++.++- |.. .+.|.. ++.++|++.... ......+ +.. --.||- +.+.
T Consensus 135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~-~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv-~~~~~~~~ 212 (305)
T 3dr2_A 135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYR-LPPDGSPLQRMADLDHPNGLAFSPDEQTLYV-SQTPEQGH 212 (305)
T ss_dssp CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEE-ECSSSCCCEEEEEESSEEEEEECTTSSEEEE-EECCC---
T ss_pred CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEE-EcCCCCcEEEEecCCCCcceEEcCCCCEEEE-EecCCcCC
Confidence 68899999874431 321 133444 565556654322 0111111 211 111221 2222
Q ss_pred -CCcEEEEcccCcee---eec-CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCc
Q psy682 214 -TSDVKVHTTFGDLL---RSL-DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHN 275 (330)
Q Consensus 214 -Dgtvkl~~~~G~ll---~tL-~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~ 275 (330)
++.|..++..+.-+ +.+ ....+ .+..+++.+||.+.++. .+.+..|+++|+.+......
T Consensus 213 ~~~~i~~~~~~~~~l~~~~~~~~~~~~--~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~ 276 (305)
T 3dr2_A 213 GSVEITAFAWRDGALHDRRHFASVPDG--LPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTP 276 (305)
T ss_dssp CCCEEEEEEEETTEEEEEEEEECCSSS--CCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECS
T ss_pred CCCEEEEEEecCCCccCCeEEEECCCC--CCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECC
Confidence 36777776543212 111 11223 67889999999977776 44599999999988877544
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.41 E-value=0.0026 Score=58.95 Aligned_cols=180 Identities=11% Similarity=-0.010 Sum_probs=99.7
Q ss_pred EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CCCcc------ce-eeee
Q psy682 84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQ------KL-RVRH 155 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~~~~------~~-~~~~ 155 (330)
++....+.|.+|+++++...... . ...+.++.+++|+.+..++. .++...... +.+.. .. ....
T Consensus 65 ~~d~~~~~i~~~d~~~~~~~~~~-~----~~~v~~i~~~~dg~l~v~~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~ 136 (326)
T 2ghs_A 65 WFNILERELHELHLASGRKTVHA-L----PFMGSALAKISDSKQLIASD---DGLFLRDTATGVLTLHAELESDLPGNRS 136 (326)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEE-C----SSCEEEEEEEETTEEEEEET---TEEEEEETTTCCEEEEECSSTTCTTEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEE-C----CCcceEEEEeCCCeEEEEEC---CCEEEEECCCCcEEEEeeCCCCCCCCCC
Confidence 44445667888888765443321 1 12466788999998554332 224333321 11100 00 1234
Q ss_pred eEEEEecCCCeEEEeecc---CCeEEEeeecccccccccccC--CCCcEEEe--HHHHHhhhccCCCcEEEEcc---cC-
Q psy682 156 NCFVTTVDSRFLLACGFW---DNSFREPFTTMYLALQEGKFD--HPNRLFSS--ISLAWKNCQRDTSDVKVHTT---FG- 224 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~---D~tirl~w~~~~g~l~~~l~g--H~d~ViaS--t~~lW~~SgS~Dgtvkl~~~---~G- 224 (330)
+.++++|||++.+++... ....+| |.+++|++.....+ ....+..+ --.+|- +.+.++.|.+++. +|
T Consensus 137 ~~i~~d~~G~l~v~~~~~~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv-~~~~~~~I~~~d~~~~~Gl 214 (326)
T 2ghs_A 137 NDGRMHPSGALWIGTMGRKAETGAGSI-YHVAKGKVTKLFADISIPNSICFSPDGTTGYF-VDTKVNRLMRVPLDARTGL 214 (326)
T ss_dssp EEEEECTTSCEEEEEEETTCCTTCEEE-EEEETTEEEEEEEEESSEEEEEECTTSCEEEE-EETTTCEEEEEEBCTTTCC
T ss_pred CCEEECCCCCEEEEeCCCcCCCCceEE-EEEeCCcEEEeeCCCcccCCeEEcCCCCEEEE-EECCCCEEEEEEcccccCC
Confidence 678899999975544221 134566 65544554322111 11111112 101221 4556788888875 46
Q ss_pred ce-----eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCc
Q psy682 225 DL-----LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHN 275 (330)
Q Consensus 225 ~l-----l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~ 275 (330)
++ +..+.+..+ .+..+++.+||.+.++. +.+.+..|+++|+.+......
T Consensus 215 ~~~~~~~~~~~~~~~~--~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 215 PTGKAEVFIDSTGIKG--GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp BSSCCEEEEECTTSSS--EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred cccCceEEEECCCCCC--CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence 42 334443334 67899999999988876 567899999999988776543
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.36 E-value=0.0032 Score=61.42 Aligned_cols=110 Identities=10% Similarity=-0.094 Sum_probs=67.4
Q ss_pred eEEEEecCCCeEEEeecc-CCeEEEeeecccccccccccCCCCcEEEe-HHHHHhhhccCCCcEEEEcc--cCceeeecC
Q psy682 156 NCFVTTVDSRFLLACGFW-DNSFREPFTTMYLALQEGKFDHPNRLFSS-ISLAWKNCQRDTSDVKVHTT--FGDLLRSLD 231 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~-D~tirl~w~~~~g~l~~~l~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~ 231 (330)
..++|+|||++++++... +++|.+ +++++++++.++.--.-..+.+ -.+.+- +.+.||++..-+. .|+...+..
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsV-ID~~t~~vv~tI~v~g~~~~~P~g~~~~~-~~~~DG~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGV-VDLEGKAFKRMLDVPDCYHIFPTAPDTFF-MHCRDGSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEE-EETTTTEEEEEEECCSEEEEEEEETTEEE-EEETTSCEEEEECCSSSCCEEEEC
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEE-EECCCCcEEEEEECCCcceeecCCCceeE-EECCCCCEEEEECCCCCeEEEeec
Confidence 578899999999988754 789999 9999999887773211111222 110000 5677898777655 377654333
Q ss_pred CCCCC--CCC-cEEEe-CCCccEEEEccCCeEEEEeeCCc
Q psy682 232 PPSGF--ASP-ESVVM-SREGVIVVNYERGHIAAFTMNGN 267 (330)
Q Consensus 232 ~h~~~--~~v-~~v~f-S~dG~~l~s~~~~~~~~~s~nG~ 267 (330)
.+-.. ..+ ...+| .+||+.+.....+++..+...|.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 22110 011 22466 48998765555677777777654
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.30 E-value=0.0018 Score=62.43 Aligned_cols=53 Identities=6% Similarity=0.107 Sum_probs=35.7
Q ss_pred EEc-ccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEc--cCCeEEEEee-CCceeeeccC
Q psy682 219 VHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTM-NGNRLRHESH 274 (330)
Q Consensus 219 l~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~--~~~~~~~~s~-nG~~las~~~ 274 (330)
+++ .+++.++++.-+. .+..|+|+|||+ .+++. .++.+..+.. .++.+++...
T Consensus 298 ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 554 4788888886532 589999999998 33433 3677777654 5666666653
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.16 E-value=0.0034 Score=61.23 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=42.5
Q ss_pred cEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEc--cCCeEEEEe-eCCceeeeccCccccccc
Q psy682 216 DVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFT-MNGNRLRHESHNDNLQEL 281 (330)
Q Consensus 216 tvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~--~~~~~~~~s-~nG~~las~~~~~dVkEL 281 (330)
+|-+-+ .+++.++++.-. ..+++|+|||||+ .|... .++.+..+. ..|+.+++...-..-.+|
T Consensus 312 ~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l 379 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 379 (386)
T ss_dssp EEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCE
T ss_pred EEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCcee
Confidence 455544 478988887642 1688999999997 54443 467777664 488888888755444444
No 224
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.13 E-value=0.0071 Score=54.39 Aligned_cols=230 Identities=9% Similarity=0.011 Sum_probs=117.3
Q ss_pred EEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeec-----cceeccCCcEEE
Q psy682 9 VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTAN-----TYVTLHMPSVVT 83 (330)
Q Consensus 9 V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~-----~~~~~~~~~~v~ 83 (330)
|..++. +|+.+..+..+.....+.++. +|.+ ........+. +|.+++..+..... ..+....++.+.
T Consensus 80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l----~v~t~~~~l~--~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~ 151 (330)
T 3hxj_A 80 VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDIL----YVTSMDGHLY--AINTDGTEKWRFKTKKAIYATPIVSEDGTIY 151 (330)
T ss_dssp EEEECC-CGGGGGGSCC-----CCEEEE-TTEE----EEECTTSEEE--EECTTSCEEEEEECSSCCCSCCEECTTSCEE
T ss_pred EEEECC-CCcEEEEEECCCCcccCceEE-CCEE----EEEecCCEEE--EEcCCCCEEEEEcCCCceeeeeEEcCCCEEE
Confidence 788886 778877776666555555555 7777 2221122221 22233332221110 112233233333
Q ss_pred EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee---eeeeEEEE
Q psy682 84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR---VRHNCFVT 160 (330)
Q Consensus 84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~ 160 (330)
+ ++.++.+..++.++.......... ....++.+..|+.+-.++ .++......+...-... ....++++
T Consensus 152 v-gt~~~~l~~~d~~g~~~~~~~~~~----~~~~~~~~d~~g~l~v~t----~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 222 (330)
T 3hxj_A 152 V-GSNDNYLYAINPDGTEKWRFKTND----AITSAASIGKDGTIYFGS----DKVYAINPDGTEKWNFYAGYWTVTRPAI 222 (330)
T ss_dssp E-ECTTSEEEEECTTSCEEEEEECSS----CCCSCCEECTTCCEEEES----SSEEEECTTSCEEEEECCSSCCCSCCEE
T ss_pred E-EcCCCEEEEECCCCCEeEEEecCC----CceeeeEEcCCCEEEEEe----CEEEEECCCCcEEEEEccCCcceeceEE
Confidence 3 334567888888733322222111 234456666777754423 22332221111000000 11245667
Q ss_pred ecCCCeEEEeeccCCeEEEeeecccccccccccCCCC----cEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCC
Q psy682 161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN----RLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGF 236 (330)
Q Consensus 161 spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d----~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~ 236 (330)
.+||.. +++. .++.+.. ++. +|+.+........ .++..--.+| -|+.+|.+..++.+|+.+..+.-+..
T Consensus 223 ~~~g~l-~v~t-~~~gl~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~--v~t~~ggl~~~d~~g~~~~~~~~~~~- 295 (330)
T 3hxj_A 223 SEDGTI-YVTS-LDGHLYA-INP-DGTEKWRFKTGKRIESSPVIGNTDTIY--FGSYDGHLYAINPDGTEKWNFETGSW- 295 (330)
T ss_dssp CTTSCE-EEEE-TTTEEEE-ECT-TSCEEEEEECSSCCCSCCEECTTSCEE--EECTTCEEEEECTTSCEEEEEECSSC-
T ss_pred CCCCeE-EEEc-CCCeEEE-ECC-CCCEeEEeeCCCCccccceEcCCCeEE--EecCCCCEEEECCCCcEEEEEEcCCc-
Confidence 888866 4433 4777776 665 3554333322222 1122222344 36778777777888998887766555
Q ss_pred CCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682 237 ASPESVVMSREGVIVVNYERGHIAAFT 263 (330)
Q Consensus 237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s 263 (330)
.+.++.+.++|++.+...+|.++...
T Consensus 296 -~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 296 -IIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp -CCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred -cccceEEcCCCEEEEEcCCCeEEEEe
Confidence 78899999999999988888776554
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.97 E-value=0.025 Score=50.19 Aligned_cols=92 Identities=9% Similarity=-0.061 Sum_probs=57.4
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcEEEeHHHHHhhhccCCCcEEEEcc-cCceeeecC
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRLFSSISLAWKNCQRDTSDVKVHTT-FGDLLRSLD 231 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~ 231 (330)
.+.++++||++.|+.+-...+.|.. ++.+.++....+. .+.+.+-...-.+|- +....+.|...+. +|+.++++.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~-~~~~g~~~~~~~~~~~~P~gi~~d~~~lyv-a~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAEC-LNPAQPGRRKVLEGLQYPFAVTSYGKNLYY-TDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEE-EETTEEEEEEEEECCCSEEEEEEETTEEEE-EETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEE-EecCCCceEEEecCCCCceEEEEeCCEEEE-EECCCCeEEEEeCCCCCceEEEc
Confidence 4678899999888888878889998 8886443322221 232222111111221 3334567777665 699999987
Q ss_pred CCCCCCCCcEEEeCCCcc
Q psy682 232 PPSGFASPESVVMSREGV 249 (330)
Q Consensus 232 ~h~~~~~v~~v~fS~dG~ 249 (330)
.... ..+..|++.||+-
T Consensus 247 ~g~~-~~p~gi~~~~~~~ 263 (267)
T 1npe_A 247 PHKQ-TRLYGITIALSQC 263 (267)
T ss_dssp CSSC-CCCCCEEEECSCC
T ss_pred cccc-cccceeeecCccC
Confidence 5432 2588899998864
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.74 E-value=0.018 Score=59.66 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=62.0
Q ss_pred CCeEEEeeecccccccccccCCCCc---EEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCC
Q psy682 174 DNSFREPFTTMYLALQEGKFDHPNR---LFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSRE 247 (330)
Q Consensus 174 D~tirl~w~~~~g~l~~~l~gH~d~---ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d 247 (330)
+++|+. |++.+|+++-....+... +++. -+.. .|+.||.++.|+. +|++|.+++-+.+. .-..++|+.|
T Consensus 454 ~g~l~A-~D~~tG~~~W~~~~~~~~~~g~~~tagglvf---~gt~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~ty~~~ 528 (689)
T 1yiq_A 454 SGKLIA-WDPVKQQAAWEVPYVTIFNGGTLSTAGNLVF---EGSADGRVIAYAADTGEKLWEQPAASGV-MAAPVTYSVD 528 (689)
T ss_dssp EEEEEE-EETTTTEEEEEEEESSSCCCCEEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET
T ss_pred ceeEEE-EECCCCCeEeEccCCCCccCccceECCCEEE---EECCCCcEEEEECCCCccceeeeCCCCc-ccCceEEEEC
Confidence 578999 999999875544433321 2333 2222 6899999999975 79999998866551 3356888999
Q ss_pred ccEEEEc--c--------------------CCeEEEEeeCCce
Q psy682 248 GVIVVNY--E--------------------RGHIAAFTMNGNR 268 (330)
Q Consensus 248 G~~l~s~--~--------------------~~~~~~~s~nG~~ 268 (330)
|+..|.. + .+.+..|...|..
T Consensus 529 G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~ 571 (689)
T 1yiq_A 529 GEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA 571 (689)
T ss_dssp TEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred CEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence 9966553 1 1368899988865
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.70 E-value=0.015 Score=55.92 Aligned_cols=39 Identities=5% Similarity=-0.133 Sum_probs=31.7
Q ss_pred eeeEEEEecCCCeEEEeec-cCCeEEEeeeccccccccccc
Q psy682 154 RHNCFVTTVDSRFLLACGF-WDNSFREPFTTMYLALQEGKF 193 (330)
Q Consensus 154 ~~~~~~~spDg~~i~asg~-~D~tirl~w~~~~g~l~~~l~ 193 (330)
....++|+|||++++.+.. .+++|.+ +++.+++.++++.
T Consensus 315 ~p~gi~~s~Dg~~l~va~~~~~~~VsV-ID~~t~kvv~~I~ 354 (368)
T 1mda_H 315 DSDAIIAAQDGASDNYANSAGTEVLDI-YDAASDQDQSSVE 354 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEE-EESSSCEEEEECC
T ss_pred CcceEEECCCCCEEEEEccCCCCeEEE-EECCCCcEEEEEE
Confidence 3568999999997666666 4999999 9999888877664
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=96.38 E-value=0.11 Score=49.28 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=30.0
Q ss_pred eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccc
Q psy682 155 HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGK 192 (330)
Q Consensus 155 ~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l 192 (330)
..+++|+|||+ .++++.+.+++|.+ ++.++++.++++
T Consensus 320 p~~i~~s~Dg~~~l~v~~~~~~~V~V-iD~~t~~vv~~i 357 (373)
T 2mad_H 320 VDAISVAQDGGPDLYALSAGTEVLHI-YDAGAGDQDQST 357 (373)
T ss_pred cCeEEECCCCCeEEEEEcCCCCeEEE-EECCCCCEEeee
Confidence 36889999999 66776656899999 999988887663
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.35 E-value=0.069 Score=47.20 Aligned_cols=113 Identities=12% Similarity=-0.034 Sum_probs=63.8
Q ss_pred eeEEEEecCCCeEEEeecc--CCeEEEeeeccccccccccc----CCCCcE-EEe-HHHHHhhhccCCCcEEEEcccCce
Q psy682 155 HNCFVTTVDSRFLLACGFW--DNSFREPFTTMYLALQEGKF----DHPNRL-FSS-ISLAWKNCQRDTSDVKVHTTFGDL 226 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~--D~tirl~w~~~~g~l~~~l~----gH~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~G~l 226 (330)
.+.+++.|++..|+.+... .+.|.. ++.+ |+..+.+. .+...+ +.. .-.||- +-+..+.|...+.+|..
T Consensus 124 P~~i~vd~~~g~lyv~~~~~~~~~I~~-~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv-~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 124 PRGIVTDPVRGNLYWTDWNRDNPKIET-SHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCW-VDAGTHRAECLNPAQPG 200 (267)
T ss_dssp EEEEEEETTTTEEEEEECCSSSCEEEE-EETT-SCCCEEEECTTCSCEEEEEEETTTTEEEE-EETTTTEEEEEETTEEE
T ss_pred ccEEEEeeCCCEEEEEECCCCCcEEEE-EecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEE-EECCCCEEEEEecCCCc
Confidence 3578899987777776643 357776 7774 54333221 122222 221 112221 34455677777777765
Q ss_pred eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-Cceeeecc
Q psy682 227 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES 273 (330)
Q Consensus 227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~ 273 (330)
++.+..... .+..|++. +|.+.++. ..+.+..+.++ |+.++...
T Consensus 201 ~~~~~~~~~--~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 201 RRKVLEGLQ--YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEECCC--SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred eEEEecCCC--CceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 554432222 56778775 44444443 57789889885 77777664
No 230
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.27 E-value=0.037 Score=50.56 Aligned_cols=110 Identities=14% Similarity=0.203 Sum_probs=65.1
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccc-----ccccccCCCCcEEE-eHHHHHhhh-c--------cCCCcEEEE
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-----LQEGKFDHPNRLFS-SISLAWKNC-Q--------RDTSDVKVH 220 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-----l~~~l~gH~d~Via-St~~lW~~S-g--------S~Dgtvkl~ 220 (330)
+.++++|||++|+.+-+..+.|+. ++++..+ ....+.+ .+-+.. +.=.+|--. + +..+.|...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~-~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~ 265 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVK-YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF 265 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEE-EESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEE-EECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence 578899999988888777788988 8875321 1111223 333322 111233311 1 113456667
Q ss_pred cccCceeeecCCCCC--CCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCce
Q psy682 221 TTFGDLLRSLDPPSG--FASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR 268 (330)
Q Consensus 221 ~~~G~ll~tL~~h~~--~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~ 268 (330)
+.+|++++.+..+.+ ...+..+++ .+|++.++. ..+.|..|.++.+.
T Consensus 266 d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 266 DEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp CTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred CCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 788999988876543 235778887 578777775 46778777766543
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.15 E-value=0.024 Score=55.82 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=34.6
Q ss_pred eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccc--cCCCC
Q psy682 155 HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGK--FDHPN 197 (330)
Q Consensus 155 ~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l--~gH~d 197 (330)
...++|+|||+ .++++...+++|-+ +++.+++.++++ .|+.-
T Consensus 372 P~gia~spDg~~~lyv~n~~s~~VsV-ID~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 372 IDSINVSQDAEPLLYALSAGTQTLHI-YDAATGEELRSVDQLGRGP 416 (426)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEE-EETTTCCEEEEECCCSSSC
T ss_pred cCeEEEccCCCEEEEEEcCCCCeEEE-EECCCCCEEEEecCCCCCC
Confidence 46899999999 87887766999999 999999998876 45443
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.68 E-value=0.0038 Score=59.21 Aligned_cols=103 Identities=11% Similarity=-0.092 Sum_probs=43.1
Q ss_pred EecCCCeEEEeeccCCeEEEeeecccccccccccCCCC------cEE-EeHHHHHhhhccCCCcEEEEcc-cCceeeecC
Q psy682 160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN------RLF-SSISLAWKNCQRDTSDVKVHTT-FGDLLRSLD 231 (330)
Q Consensus 160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d------~Vi-aSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~ 231 (330)
+.++++. +.+++.|++|+. |+.++|+.+..+..+.. .++ ..-..+ .|+.||+|..|+. +|+.+.++.
T Consensus 45 ~~~~g~~-~v~~s~dg~l~a-~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~---~g~~dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 45 THVEEPA-FLPDPNDGSLYT-LGSKNNEGLTKLPFTIPELVQASPCRSSDGILY---MGKKQDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp -----CC-EEECTTTCCEEE-C-----CCSEECSCCHHHHHTTCSCC-----CC---CCEEEEEEEEECCC---------
T ss_pred eEcCCCE-EEEeCCCCEEEE-EECCCCceeeeeeccCccccccCceEecCCEEE---EEeCCCEEEEEECCCCcEEEEec
Confidence 3456766 444568999999 99988876544433211 112 111112 6788999999976 699998887
Q ss_pred CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeecc
Q psy682 232 PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHES 273 (330)
Q Consensus 232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~ 273 (330)
.+. .+.++|++..|+.++ ++.++.|.. +|+.+-+..
T Consensus 120 ~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 120 SAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred CCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 653 245677877777764 678888875 677665543
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.58 E-value=0.13 Score=53.02 Aligned_cols=88 Identities=9% Similarity=0.077 Sum_probs=58.1
Q ss_pred CeEEEeeecccccccccccCCC---CcEEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc
Q psy682 175 NSFREPFTTMYLALQEGKFDHP---NRLFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG 248 (330)
Q Consensus 175 ~tirl~w~~~~g~l~~~l~gH~---d~ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG 248 (330)
++|+. |++.+|+++-...... ...++. -... .|+.||++++++. +|+.+.++.-+.+ ..-..+.+++||
T Consensus 457 g~l~A-~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~---~g~~dg~l~a~D~~tG~~lw~~~~~~~-~~~~p~~y~~~G 531 (677)
T 1kb0_A 457 GRLLA-WDPVAQKAAWSVEHVSPWNGGTLTTAGNVVF---QGTADGRLVAYHAATGEKLWEAPTGTG-VVAAPSTYMVDG 531 (677)
T ss_dssp EEEEE-EETTTTEEEEEEEESSSCCCCEEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETT
T ss_pred cEEEE-EeCCCCcEEeecCCCCCCcCcceEeCCCEEE---EECCCCcEEEEECCCCceeeeeeCCCC-cccCCEEEEeCC
Confidence 67888 9998888644332211 122332 2222 5789999999975 7999999986554 244567788999
Q ss_pred cEEEEc--c----------------CCeEEEEeeCCc
Q psy682 249 VIVVNY--E----------------RGHIAAFTMNGN 267 (330)
Q Consensus 249 ~~l~s~--~----------------~~~~~~~s~nG~ 267 (330)
+..+.. + .+.+..|...++
T Consensus 532 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~ 568 (677)
T 1kb0_A 532 RQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK 568 (677)
T ss_dssp EEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred EEEEEEeccCCccccccccccccCCCCeEEEEecccc
Confidence 866543 2 367888887764
No 234
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.54 E-value=0.58 Score=45.28 Aligned_cols=28 Identities=0% Similarity=-0.235 Sum_probs=21.1
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTM 184 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~ 184 (330)
+.++|+|||++|+.+-...+.|.. ++.+
T Consensus 273 ~gia~~pdG~~lyv~d~~~~~I~~-~~~d 300 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQHYILR-SDYD 300 (430)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEE-EEEE
T ss_pred eeEEEcCCCCEEEEEECCCCEEEE-EeCC
Confidence 568889999877777767777877 6654
No 235
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.28 E-value=1.6 Score=39.33 Aligned_cols=88 Identities=6% Similarity=-0.156 Sum_probs=54.7
Q ss_pred ecCCCeEEEeeccCCeEEEeeeccc-cccc--ccc--cCCCCcEEE-eHHHHHhhhccCCCcEEEEcccCceee--ecCC
Q psy682 161 TVDSRFLLACGFWDNSFREPFTTMY-LALQ--EGK--FDHPNRLFS-SISLAWKNCQRDTSDVKVHTTFGDLLR--SLDP 232 (330)
Q Consensus 161 spDg~~i~asg~~D~tirl~w~~~~-g~l~--~~l--~gH~d~Via-St~~lW~~SgS~Dgtvkl~~~~G~ll~--tL~~ 232 (330)
+||+++|+.+-+..++|.. ++++. |++- +.+ ..+.+-+.. +.=.+|- +-...+.|.+++.+|++.. .+..
T Consensus 175 s~dg~~lyv~d~~~~~I~~-~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~~~~~V~~~~~~G~~~~~~~~~~ 252 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLR-IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIAPDRSTTIIAQAEQ 252 (306)
T ss_dssp EEETTEEEEEETTTTEEEE-EEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEECTTCCEEEEECGGG
T ss_pred CcCCCEEEEEeCCCCEEEE-EEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeCCCCeEEEECCCCCEEEEeeccc
Confidence 8999999999888899988 88763 4431 111 134444422 2112333 3344567888888898743 4443
Q ss_pred CCCCCCCcEEEeC---CCccEEE
Q psy682 233 PSGFASPESVVMS---REGVIVV 252 (330)
Q Consensus 233 h~~~~~v~~v~fS---~dG~~l~ 252 (330)
+.. .+.+++|+ |||..|.
T Consensus 253 ~~~--~p~~~a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 253 GVI--GSTAVAFGQTEGDCTAIY 273 (306)
T ss_dssp TCT--TEEEEEECCSTTTTTEEE
T ss_pred ccC--CceEEEEecccCCCCEEE
Confidence 323 68999999 8866553
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=95.19 E-value=0.046 Score=53.73 Aligned_cols=33 Identities=9% Similarity=-0.172 Sum_probs=22.1
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCCc
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~ 41 (330)
++|.+.|..+++.+.+++--... .++|||||+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~ 131 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSF 131 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCE
Confidence 67777787777777777543333 6667766665
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.98 E-value=0.23 Score=50.95 Aligned_cols=80 Identities=9% Similarity=0.122 Sum_probs=51.4
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccc-ccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCC
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ-EGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPS 234 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~-~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~ 234 (330)
.++++||||+++++++--+.++-+ +++++.+.. .....-.+.| +.++..
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsV-id~~~~~~~~~~~l~~~~~v---------------------------~~~v~v-- 329 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTV-LDVTRFDAVFYENADPRSAV---------------------------VAEPEL-- 329 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEE-EEGGGHHHHHHSCCCGGGGE---------------------------EECCBC--
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEE-EECcccccccccccCcccce---------------------------EEEcCC--
Confidence 589999999999999999999999 888744311 0000111111 112211
Q ss_pred CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682 235 GFASPESVVMSREGVIVVNY-ERGHIAAFTMNG 266 (330)
Q Consensus 235 ~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG 266 (330)
+ ..+.-++|+|||...++- -+..+..|.++.
T Consensus 330 G-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp C-SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred C-CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1 168999999999433333 477888888764
No 238
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.95 E-value=1.1 Score=42.58 Aligned_cols=113 Identities=7% Similarity=-0.012 Sum_probs=64.6
Q ss_pred eEEEEecCCCeEEEeeccC-CeEEEeeeccccccccccc----CCCCcE-EEe-HHHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGKF----DHPNRL-FSS-ISLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l~----gH~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
+.+++.|++.+|+.+-... +.|.. .+.+ |.....+. ....-+ +.. .-+||- +=+..+.|...+.+|...+
T Consensus 205 ~giavdp~~g~ly~td~~~~~~I~r-~~~d-G~~~~~~~~~~~~~PnGlavd~~~~~lY~-aD~~~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 205 RAIALHPMEGTIYWTDWGNTPRIEA-SSMD-GSGRRIIADTHLFWPNGLTIDYAGRRMYW-VDAKHHVIERANLDGSHRK 281 (386)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEE-EETT-SCSCEEEECSSCSCEEEEEEEGGGTEEEE-EETTTTEEEEECTTSCSCE
T ss_pred cEEEEEcCCCeEEEeccCCCCEEEE-EeCC-CCCcEEEEECCCCCeeeEEEeCCCCEEEE-EECCCCEEEEEeCCCCeeE
Confidence 5788999888878876444 66766 6764 54333322 112222 221 111211 3344567777777776666
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEE-ccCCeEEEEe-eCCceeeecc
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHES 273 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s-~~~~~~~~~s-~nG~~las~~ 273 (330)
++.... ...+..|++. ++.+.++ ...+.+..+. .+|+.+..+.
T Consensus 282 ~~~~~~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 282 AVISQG-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEECSS-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEECC-CCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 553211 1268899994 4444444 3677888887 6887665553
No 239
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.89 E-value=2.4 Score=41.02 Aligned_cols=27 Identities=4% Similarity=-0.189 Sum_probs=20.7
Q ss_pred EEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682 157 CFVTTVDSRFLLACGFWDNSFREPFTTM 184 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~tirl~w~~~ 184 (330)
.++|+|||++|+.+-...+.|+. ++.+
T Consensus 277 ~ia~dpdG~~LYvad~~~~~I~~-~~~d 303 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKHCIYR-VDYN 303 (433)
T ss_dssp EEEECTTSSEEEEEETTTTEEEE-EEBC
T ss_pred cEEEeCCCCEEEEEeCCCCEEEE-EeCC
Confidence 58899999877877777778877 6654
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.58 Score=46.56 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCcEEEeCCCccEEEEcc
Q psy682 238 SPESVVMSREGVIVVNYE 255 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~~ 255 (330)
.+..+++||||+.|..+.
T Consensus 382 gPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 382 APQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEcCCCCEEEEEc
Confidence 489999999999887764
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.81 E-value=0.28 Score=45.27 Aligned_cols=94 Identities=9% Similarity=0.011 Sum_probs=54.3
Q ss_pred CCCeEEEeeccCCeEEEeeecccccccccccCCC-----CcEEEeHHHHHhhhccCCCcEEEEc-ccCceeeecCCCCCC
Q psy682 163 DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-----NRLFSSISLAWKNCQRDTSDVKVHT-TFGDLLRSLDPPSGF 236 (330)
Q Consensus 163 Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-----d~ViaSt~~lW~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~ 236 (330)
++..|+++. .++.+.. ++..+|+.+-...... ..+++.- .+| .++.+|.+..++ .+|+++...+.+..
T Consensus 276 ~~~~l~~~~-~~g~l~~-~d~~tG~~~w~~~~~~~~~~~~~~~~~~-~l~--v~~~~g~l~~~d~~tG~~~~~~~~~~~- 349 (376)
T 3q7m_A 276 DGNRIYLVD-QNDRVMA-LTIDGGVTLWTQSDLLHRLLTSPVLYNG-NLV--VGDSEGYLHWINVEDGRFVAQQKVDSS- 349 (376)
T ss_dssp ETTEEEEEE-TTCCEEE-EETTTCCEEEEECTTTTSCCCCCEEETT-EEE--EECTTSEEEEEETTTCCEEEEEECCTT-
T ss_pred ECCEEEEEc-CCCeEEE-EECCCCcEEEeecccCCCcccCCEEECC-EEE--EEeCCCeEEEEECCCCcEEEEEecCCC-
Confidence 344556654 5888888 8988888653332111 1122221 122 477889888886 58999887765333
Q ss_pred CCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682 237 ASPESVVMSREGVIVVNYERGHIAAFT 263 (330)
Q Consensus 237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s 263 (330)
.+.+...-.+|.+++...++.++.|.
T Consensus 350 -~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 350 -GFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -CBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred -cceeCCEEECCEEEEEeCCCEEEEEe
Confidence 22221112366766666677777664
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=94.68 E-value=0.056 Score=53.86 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=23.8
Q ss_pred CCCcEEEeecccccccceeecC--CCceeEEEe--CCCCCc
Q psy682 5 DKGIVEVWRTFNLALLYAFPSC--DSSVRSLAL--SHDQKY 41 (330)
Q Consensus 5 ~d~~V~lW~~~~g~~l~tl~gH--~~~V~svaf--Spdg~~ 41 (330)
.+.+|.+|++++++++.++.-- ...-+.|+| +|||++
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~ 266 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLM 266 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCE
Confidence 4688999999888877776542 123334433 666665
No 243
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.46 E-value=0.57 Score=48.56 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=61.5
Q ss_pred cEEEEEeC-CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-CcccCCCCCCCCCCCCCCccccCCCc-eec
Q psy682 53 VCMSLKFP-SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPI-LTH 129 (330)
Q Consensus 53 ~~~~v~Fs-~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~ 129 (330)
.+...+|| |||+.|+.+.. -+++...+|++++.+++ +... ..- ......+.++||++ ++.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~------------~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVD------------MSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEE------------SSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEE
T ss_pred EEeeeEecCCCCCEEEEEEe------------CCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEE
Confidence 45677888 88887644411 12334457899998776 4211 110 11234689999997 443
Q ss_pred cCCCCC---CCcceeccCCCCccceee-------eeeEEEEecCCCeEEEeeccCCe--EEEeeecccc
Q psy682 130 PTSNNN---APVPKRHLGDNFSQKLRV-------RHNCFVTTVDSRFLLACGFWDNS--FREPFTTMYL 186 (330)
Q Consensus 130 ~s~~~~---~~~~~~~l~~~~~~~~~~-------~~~~~~~spDg~~i~asg~~D~t--irl~w~~~~g 186 (330)
.+.+.. ..++...++..-.+...+ ....+.+||||++|+.+.....+ |.+ ++++++
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~-~d~~~~ 305 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHL-LDLRKG 305 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEE-EESSSC
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEE-EECCCC
Confidence 222211 124445555432221111 11356789999997766533223 445 555543
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.45 E-value=0.97 Score=40.79 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=27.5
Q ss_pred CCcEEEeCCCccEEEEc-cCCeEEEEeeCCceee
Q psy682 238 SPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLR 270 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~la 270 (330)
.+..+++.+||++.++. ..+.+..|+++|+...
T Consensus 213 ~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~ 246 (306)
T 2p4o_A 213 NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI 246 (306)
T ss_dssp CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE
T ss_pred CCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEE
Confidence 57889999999987776 4788999999998743
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.95 E-value=0.023 Score=58.33 Aligned_cols=69 Identities=7% Similarity=-0.071 Sum_probs=45.8
Q ss_pred CCCCccccCCCceeccCCCCCCCcceeccCCC-------Ccc------ceee--eeeEEEEecCCCeEEEeeccCCeEEE
Q psy682 115 PPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-------FSQ------KLRV--RHNCFVTTVDSRFLLACGFWDNSFRE 179 (330)
Q Consensus 115 ~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-------~~~------~~~~--~~~~~~~spDg~~i~asg~~D~tirl 179 (330)
.+..+.|||||+++..+...++.+....+... +.. .++. ....++|+||| +++++-+-|..|-+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence 46679999999966555555555543333211 100 1111 12578899999 78999999999999
Q ss_pred eeeccc
Q psy682 180 PFTTMY 185 (330)
Q Consensus 180 ~w~~~~ 185 (330)
|++++
T Consensus 357 -wdi~~ 361 (595)
T 1fwx_A 357 -WNIED 361 (595)
T ss_dssp -EEHHH
T ss_pred -EEhhH
Confidence 99975
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.69 E-value=3.3 Score=38.50 Aligned_cols=112 Identities=8% Similarity=-0.011 Sum_probs=63.8
Q ss_pred eeEEEEecCCCeEEEeeccC-CeEEEeeecccccccccccC----CCCcE-EEe-HHHHHhhhccCCCcEEEEcccCcee
Q psy682 155 HNCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGKFD----HPNRL-FSS-ISLAWKNCQRDTSDVKVHTTFGDLL 227 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l~g----H~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll 227 (330)
.+.+++.|++.+|+.+-... +.|.. .+.+ |.....+.. ...-+ +.. .-+||- +=+..+.|...+.+|...
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r-~~~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~-aD~~~~~I~~~~~dG~~~ 237 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEA-SSMD-GSGRRIIADTHLFWPNGLTIDYAGRRMYW-VDAKHHVIERANLDGSHR 237 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEE-EETT-SCSCEESCCSSCSCEEEEEEETTTTEEEE-EETTTTEEEEEETTSCSC
T ss_pred cceEEEecCcCeEEEeccCCCCEEEE-EeCC-CCCcEEEEECCCCCcceEEEeCCCCEEEE-EECCCCEEEEEeCCCCce
Confidence 36788999877878876545 66776 7775 544333321 11222 221 112211 233446677777777766
Q ss_pred eecCC-CCCCCCCcEEEeCCCccEEEE-ccCCeEEEEe-eCCceeeec
Q psy682 228 RSLDP-PSGFASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE 272 (330)
Q Consensus 228 ~tL~~-h~~~~~v~~v~fS~dG~~l~s-~~~~~~~~~s-~nG~~las~ 272 (330)
+++.. ... .+..|++. +|.+.++ ...+.+..+. .+|+.+..+
T Consensus 238 ~~~~~~~~~--~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 238 KAVISQGLP--HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEECSSCS--SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEeCCCC--CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 65432 223 68889994 4444444 3677788877 678765544
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=93.47 E-value=0.35 Score=43.88 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=29.8
Q ss_pred CcEEEeCCCccEEEEcc-----------CCeEEEEeeCCceeeeccCc
Q psy682 239 PESVVMSREGVIVVNYE-----------RGHIAAFTMNGNRLRHESHN 275 (330)
Q Consensus 239 v~~v~fS~dG~~l~s~~-----------~~~~~~~s~nG~~las~~~~ 275 (330)
+..+++.+||.+.++.. .+.+..|+++|+.+......
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~ 278 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP 278 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence 68899999999888763 35689999999988776543
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=92.83 E-value=0.28 Score=50.95 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=45.7
Q ss_pred CCeEEEeeccC--CeEEEeeec--cccccccc-ccCCCCc-EEEe------HHHHHhhhccCCCcEEEE--cc-------
Q psy682 164 SRFLLACGFWD--NSFREPFTT--MYLALQEG-KFDHPNR-LFSS------ISLAWKNCQRDTSDVKVH--TT------- 222 (330)
Q Consensus 164 g~~i~asg~~D--~tirl~w~~--~~g~l~~~-l~gH~d~-ViaS------t~~lW~~SgS~Dgtvkl~--~~------- 222 (330)
|+.|+.....| ...+| |.. +++.-.+. +..|... .+.+ .+.+ +...||..+|+ +.
T Consensus 330 g~~l~~~t~~~~a~~~~L-~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~---~~~~~g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKL-LIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVV---AGRRAGLTRIWTMMADSQDGVF 405 (751)
T ss_dssp TTEEEEEECTTTCTTCEE-EEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEE---EEEETTEEEEEEEECCTTTSCC
T ss_pred CCEEEEEeCCCCCCCcEE-EEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEE---EEEeCCEEEEEEEecccccccc
Confidence 77666655555 45666 544 32222233 4444433 2221 2222 56677877776 32
Q ss_pred cCce-eeecCCCCCCCCCcEEEe------CCCcc-EEEEccC----CeEEEEeeCC
Q psy682 223 FGDL-LRSLDPPSGFASPESVVM------SREGV-IVVNYER----GHIAAFTMNG 266 (330)
Q Consensus 223 ~G~l-l~tL~~h~~~~~v~~v~f------S~dG~-~l~s~~~----~~~~~~s~nG 266 (330)
.|.. ++.|.-+. ....+.| ++|+. ++++++. ..+..+.+..
T Consensus 406 ~~g~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~ 458 (751)
T 2xe4_A 406 KAGTGLREVVMEE---PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQD 458 (751)
T ss_dssp CTTTCCEECCCCC---SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTT
T ss_pred cCCccceEECCCC---ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 3333 55554222 2334455 45665 4444432 3466666543
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.49 E-value=2.1 Score=43.76 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=56.4
Q ss_pred cCCeEEEeeecccccccccccCCC---CcEEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC
Q psy682 173 WDNSFREPFTTMYLALQEGKFDHP---NRLFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR 246 (330)
Q Consensus 173 ~D~tirl~w~~~~g~l~~~l~gH~---d~ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~ 246 (330)
+++.|.. |+..+|+..=....+. ...++. -+.. .|+.||.++.++. +|+++..++.+.+. .-.-+++..
T Consensus 436 ~~g~l~A-~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf---~g~~dg~l~a~d~~tG~~l~~~~~~~~~-~~~p~~~~~ 510 (668)
T 1kv9_A 436 VSGALLA-WDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF---QGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFEL 510 (668)
T ss_dssp CEEEEEE-EETTTTEEEEEEEESSSCCCCEEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEE
T ss_pred ccceEEE-EeCCCCcEEEEccCCCCCcCceeEeCCCEEE---EECCcccchhhhhhcChhheEecCCCCc-ccCceEEEE
Confidence 5688998 9998888643222211 112322 1222 5789999999975 79999988776542 224566677
Q ss_pred CccEEEEc--c--------------------CCeEEEEeeCC
Q psy682 247 EGVIVVNY--E--------------------RGHIAAFTMNG 266 (330)
Q Consensus 247 dG~~l~s~--~--------------------~~~~~~~s~nG 266 (330)
||+..++. + .+.|+.|..+|
T Consensus 511 ~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 552 (668)
T 1kv9_A 511 AGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG 552 (668)
T ss_dssp TTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred CCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence 88854432 1 24688888888
No 250
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.23 E-value=6.6 Score=35.71 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=57.6
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc----CCCCcE-EEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF----DHPNRL-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~----gH~d~V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
..+++.+.++.|+.+-...+.|.+ .+++ |+....+. .+...+ +.. -.+.|.-.+ ..+.|...+.+|...+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~-~~~~-g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSV-ADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE-EETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEE-EeCC-CCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCCCeE
Confidence 355566655555665555666766 6664 43222221 111111 111 111121011 1144444556676666
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCceeee
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRH 271 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~las 271 (330)
.+... ....++.|+++|++..|..+ ..+.|..+..+|.....
T Consensus 157 ~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~ 200 (316)
T 1ijq_A 157 SLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 200 (316)
T ss_dssp EEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE
Confidence 55321 11278899999887766555 36678888888865443
No 251
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.01 E-value=1.2 Score=45.90 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=53.5
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc------cCCCCcE-EEeHHHHHhhhccCCCcEEEEc-ccCce
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK------FDHPNRL-FSSISLAWKNCQRDTSDVKVHT-TFGDL 226 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l------~gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~-~~G~l 226 (330)
.+.++++|+++.|+.+-+..+.|.. ++++ |.-.+.+ .+|.+.| +...-+.| +....+.|...+ .+|+.
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~-~d~d-G~~~~~~~~~~~~~~~P~glavd~~~lyw--td~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISS-IDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFW--TDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEE-ECSS-SSCCEEECCCSSSCSSCCCCEEETTEEEE--ECSTTTCEEEEETTTEEE
T ss_pred ccEEEEeccCCEEEEEecCCCeEEE-EccC-CCceEEEEecCCcCCCceEeEEECCEEEE--EeCCCCeEEEEEccCCCc
Confidence 4678999998888888777888988 8885 4322222 2444444 22222223 334456777765 47998
Q ss_pred eeecCCCCCCCCCcEEEeCCC
Q psy682 227 LRSLDPPSGFASPESVVMSRE 247 (330)
Q Consensus 227 l~tL~~h~~~~~v~~v~fS~d 247 (330)
+++|..+.. .+..|++..+
T Consensus 618 ~~~i~~~~~--~P~~i~v~~~ 636 (699)
T 1n7d_A 618 VNLLAENLL--SPEDMVLFHQ 636 (699)
T ss_dssp EECCCTTCS--SCCCCCBCSS
T ss_pred eEEeecCCC--CCcEEEEeCc
Confidence 888865433 5666665544
No 252
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.14 E-value=6.7 Score=36.09 Aligned_cols=112 Identities=10% Similarity=0.026 Sum_probs=62.9
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcE-EEeH--HHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRL-FSSI--SLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~V-iaSt--~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
..+++.+.+..|+.+-...+.|.+ ++++ |+....+.. ....| +... .+.|. .-...+.|...+.+|+..+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~-~~~d-G~~~~~l~~~~~~~P~giavdp~~g~ly~t-d~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEV-SNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWT-DWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE-EETT-SCSCEEEECSSCSSEEEEEEEGGGTEEEEE-ECSSSCEEEEEETTSCSCE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEE-EECC-CCcEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCCEEEEEEcCCCCeE
Confidence 456677766666776656677877 7775 544333321 11111 2211 11121 1112344555566787766
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCceeee
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNRLRH 271 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~las 271 (330)
.+... +...++.|+|+|++..|.-++ .+.|..+..||.....
T Consensus 159 ~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 202 (318)
T 3sov_A 159 IIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA 202 (318)
T ss_dssp EEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE
Confidence 65321 113789999999777665553 6788889999865443
No 253
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.77 E-value=2.6 Score=39.86 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=52.1
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc----cCCCCcEEEe-HHHHHhhhccCCCcEEEEc-ccCceee
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK----FDHPNRLFSS-ISLAWKNCQRDTSDVKVHT-TFGDLLR 228 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l----~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~-~~G~ll~ 228 (330)
.+.++++|+++.|+.+=+..+.|+. ++++ |.....+ .+|.+.|-+. --..| +-...+.|...+ .+|+.++
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~-~d~d-G~~~~~~~~~~~~~P~giav~~~~ly~--td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIER-ANLD-GSHRKAVISQGLPHPFAITVFEDSLYW--TDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEE-ECTT-SCSCEEEECSSCSSEEEEEEETTEEEE--EETTTTEEEEEETTTCCSCE
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEE-EeCC-CCeeEEEEECCCCCceEEEEECCEEEE--eeCCCCeEEEEECCCCcceE
Confidence 4678899988888888777788888 8885 4322211 2344444222 11112 333455666555 5788888
Q ss_pred ecCCCCCCCCCcEEEeC-CCcc
Q psy682 229 SLDPPSGFASPESVVMS-REGV 249 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS-~dG~ 249 (330)
++..... .+..|++- |..|
T Consensus 324 ~i~~~~~--~p~gi~v~~~~~q 343 (386)
T 3v65_B 324 IIRNKLH--FPMDIHTLHPQRQ 343 (386)
T ss_dssp EEECSCS--CCCCEEEESGGGS
T ss_pred EEccCCC--CCceEEEEchhcC
Confidence 7765434 56666553 4444
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=89.59 E-value=0.85 Score=41.86 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=56.1
Q ss_pred EEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCc------E-EEeHHHHHhhhccCCCcEEE-EcccCcee
Q psy682 158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNR------L-FSSISLAWKNCQRDTSDVKV-HTTFGDLL 227 (330)
Q Consensus 158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~------V-iaSt~~lW~~SgS~Dgtvkl-~~~~G~ll 227 (330)
..+++||+.+++|- .++++.+ ++.++.+.+..+.- +... + +. .-++|- ....+++|-+ -..+|+.+
T Consensus 110 ~glt~Dg~~l~vs~-gs~~l~v-iD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv-n~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 110 WGLATDGKILYGSD-GTSILYE-IDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA-NIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp CEEEECSSSEEEEC-SSSEEEE-ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE-EETTSSEEEEEETTTCCEE
T ss_pred EEEEECCCEEEEEC-CCCeEEE-EECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE-ecCCCCeEEEEECCCCcEE
Confidence 44788999988887 5888998 89887765544431 1000 1 11 113442 1222344444 45589888
Q ss_pred eecCCC-----------CCCCCCcEEEeCCCccEEEEcc
Q psy682 228 RSLDPP-----------SGFASPESVVMSREGVIVVNYE 255 (330)
Q Consensus 228 ~tL~~h-----------~~~~~v~~v~fS~dG~~l~s~~ 255 (330)
+++.-. .....++.|+|+|+|+.+.-++
T Consensus 186 ~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 186 GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 887531 0002678999999997665554
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=89.57 E-value=0.67 Score=42.56 Aligned_cols=113 Identities=6% Similarity=-0.000 Sum_probs=71.8
Q ss_pred eEEEEecCCCeEEEee-ccCCeEEEeeeccccccccccc--CCCCcE-EE-eHHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682 156 NCFVTTVDSRFLLACG-FWDNSFREPFTTMYLALQEGKF--DHPNRL-FS-SISLAWKNCQRDTSDVKVHTT-FGDLLRS 229 (330)
Q Consensus 156 ~~~~~spDg~~i~asg-~~D~tirl~w~~~~g~l~~~l~--gH~d~V-ia-St~~lW~~SgS~Dgtvkl~~~-~G~ll~t 229 (330)
.-++|++|++..+++| +.+.+|++ .++++|+.++.+. .+.... ++ .--+||. +.-.+++|-+.+. +++.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~-iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv-~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQ-VALQTGKVENIHKMDDSYFGEGLTLLNEKLYQ-VVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEE-EETTTCCEEEEEECCTTCCEEEEEEETTEEEE-EETTCSEEEEEETTTTEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEE-EECCCCCEEEEEecCCCcceEEEEEeCCEEEE-EEecCCEEEEEECCCCcEEEE
Confidence 4567899975544444 34689999 9999999877753 222211 21 1223444 3456888888875 7999999
Q ss_pred cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC-ceeeeccC
Q psy682 230 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRHESH 274 (330)
Q Consensus 230 L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG-~~las~~~ 274 (330)
+.-.. .....+++||+.|..+ +.+.+..+.+.. +.+++...
T Consensus 102 i~~g~----~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 102 FTHQM----KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp EECCS----SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EECCC----CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 86321 2345577898755544 567788877655 55566553
No 256
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.49 E-value=4.1 Score=41.99 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=64.3
Q ss_pred eEEEEecCCCeEEEeeccC-CeEEEeeecccccccccc----cCCCCcEEEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGK----FDHPNRLFSS--ISLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l----~gH~d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
..+++.|++.+|+.+-... +.|.. .+++ |+....+ ......|-.+ .-+||- +-+..+.|...+.+|..++
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~-~~~d-G~~~~~l~~~~l~~PnGlavd~~~~~LY~-aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKK-GGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYW-VDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEB-CCSS-SCCCCEESCSSCSSCCCEEECTTTCCEEE-EETTTTEEEEECSSSSCCE
T ss_pred ceEEEccCCCcEEEcccCCCCeEEE-EeCC-CCCeeEEEeCCCCCccEEEEeccCCEEEE-EecCCCeEEEEccCCCceE
Confidence 5678898777777765323 56776 6664 5433322 2233333222 111211 3344567777777787666
Q ss_pred ecCCCC-CCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeecc
Q psy682 229 SLDPPS-GFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHES 273 (330)
Q Consensus 229 tL~~h~-~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~ 273 (330)
++.... ....+..|++-.++.+++....+.|..+.+ +|+.++.+.
T Consensus 576 ~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 654321 112566777766644444445778888876 688776664
No 257
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=89.15 E-value=1.2 Score=45.83 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=25.3
Q ss_pred EecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682 160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF 193 (330)
Q Consensus 160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~ 193 (330)
++.++..++. |..|+.+++ |+..+|+++..+.
T Consensus 484 ~~~~g~~v~~-g~~dg~l~a-~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 484 LTTAGNVVFQ-GTADGRLVA-YHAATGEKLWEAP 515 (677)
T ss_dssp EEETTTEEEE-ECTTSEEEE-EETTTCCEEEEEE
T ss_pred eEeCCCEEEE-ECCCCcEEE-EECCCCceeeeee
Confidence 5667777666 468999999 9999999876665
No 258
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=88.99 E-value=1.7 Score=43.44 Aligned_cols=150 Identities=7% Similarity=-0.024 Sum_probs=76.5
Q ss_pred ceEEEeCCCCCCcccCCCCCCCCCCCCCCccc-------cCCCc-eeccCCCCCC---C----cceeccCCCCc-----c
Q psy682 90 FAINRWNPDYAASIQSPSYAETPGSPPGNLPL-------TLDPI-LTHPTSNNNA---P----VPKRHLGDNFS-----Q 149 (330)
Q Consensus 90 ~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f-------s~D~~-l~~~s~~~~~---~----~~~~~l~~~~~-----~ 149 (330)
..|++.+.+...+.++..-..-..+....+.| ++|+. |.++...+.. . ...|.-.+.+. +
T Consensus 162 ~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~ 241 (496)
T 3kya_A 162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ 241 (496)
T ss_dssp EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEE
T ss_pred CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccce
Confidence 44666666555555543221111223567888 99987 5543222211 0 11222111222 1
Q ss_pred ceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecc-------cccccccccCCCCcEEEeHHHHHhhhccCCCcEEEE
Q psy682 150 KLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTM-------YLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220 (330)
Q Consensus 150 ~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~-------~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~ 220 (330)
.+.. +.+.+++.|+++.|+.+-+.++.|.. ++++ ++++-... .-|. +| ..
T Consensus 242 ~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r-~d~~~~~~~~~tg~~~tp~------------~~~~-~g----~~--- 300 (496)
T 3kya_A 242 LIAAYKQCNGATIHPINGELYFNSYEKGQVFR-LDLVDYFKTIKNGGSWDPI------------VKNN-PN----TF--- 300 (496)
T ss_dssp EEEEESCCCCEEECTTTCCEEEEETTTTEEEE-ECHHHHHHHHHTTCCCCCB------------GGGC-TT----TE---
T ss_pred eeccCCCceEEEEcCCCCeEEEEECCCCEEEE-EecccccccccCceeeccc------------cccc-cc----cc---
Confidence 2221 23577899977788988888888877 7775 33330000 0000 00 00
Q ss_pred cccCceeeecCCCCCCCCCcEEEeCCCccEEEE--ccCCeEEEEeeCCc
Q psy682 221 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMNGN 267 (330)
Q Consensus 221 ~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s--~~~~~~~~~s~nG~ 267 (330)
+++ -++. ... .++.|+|+|+|.+|.- ...+.|..++.||.
T Consensus 301 ---~~l-~~~~-~~~--~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 301 ---KQL-FTIA-DPS--WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp ---EEE-EECS-SSS--CCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred ---cee-EecC-CCC--CceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 001 1111 112 6789999999994333 35788988888874
No 259
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=88.91 E-value=16 Score=34.57 Aligned_cols=224 Identities=12% Similarity=-0.018 Sum_probs=110.7
Q ss_pred CcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCC------CeeEeee----cccee
Q psy682 7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNS------PICHVTA----NTYVT 75 (330)
Q Consensus 7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~------~v~~~~~----~~~~~ 75 (330)
..|+.-++.. +....+...-..+.+|+|+++++. .+.. .....|+.+ .+++ ....+.. ...+.
T Consensus 92 ~~I~~i~l~~-~~~~~~~~~~~~~~~l~~d~~~~~---lywsD~~~~~I~~~--~~~g~~~~~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 92 HEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNR---IYWSDLSQRMICST--QLDRAHGVSSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp TEEEEECTTS-CSCEEEECSCSCEEEEEEETTTTE---EEEEETTTTEEEEE--EC------CCCEEEECSSCSCEEEEE
T ss_pred ceeEEEccCC-cceeEeccccCcceEEeeeeccCc---eEEEecCCCeEEEE--EcccCCCCCcceEEEeCCCCCcccEE
Confidence 4566666644 333344445567789999985443 1433 333445443 3333 2222221 11133
Q ss_pred ccC-CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCceeccCCCCCCCcceeccCCCCcccee-
Q psy682 76 LHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFSQKLR- 152 (330)
Q Consensus 76 ~~~-~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~l~~~s~~~~~~~~~~~l~~~~~~~~~- 152 (330)
+.. ...+-++......|.+-++++.....+.... ...+..+++.| ++.|..+-.+....+.+-.+.+.....+.
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~---~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS---SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC---CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 432 3344455555667888888776544433211 23455677776 34433211111122333332222111110
Q ss_pred ---eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc------cCCCCcE-EEeHHHHHhhhccCCCcEEEEc-
Q psy682 153 ---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK------FDHPNRL-FSSISLAWKNCQRDTSDVKVHT- 221 (330)
Q Consensus 153 ---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l------~gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~- 221 (330)
.+.+.+++.++++.|+.+=...+.|+. .+++ |.....+ ..|...| +..--..| +-...+.|...+
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~-~d~d-G~~~~~~~~~~~~l~~P~gl~v~~~~lyw--td~~~~~V~~~~~ 318 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISS-IDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFW--TDIINEAIFSANR 318 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEE-EETT-SCCCEEEEECSSTTSSEEEEEEETTEEEE--EESSSCSEEEEES
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEE-EeCC-CCccEEEEeCCCCCCCCEEEEEeCCEEEE--ecCCCCeEEEEEc
Confidence 134678999988888888766788888 8885 4432222 2333333 11111223 234445666554
Q ss_pred ccCceeeecCCCCCCCCCcEEEeC
Q psy682 222 TFGDLLRSLDPPSGFASPESVVMS 245 (330)
Q Consensus 222 ~~G~ll~tL~~h~~~~~v~~v~fS 245 (330)
.+|+.++++..... .+..|++-
T Consensus 319 ~~G~~~~~i~~~~~--~p~~i~v~ 340 (400)
T 3p5b_L 319 LTGSDVNLLAENLL--SPEDMVLF 340 (400)
T ss_dssp SSCCCCEEEECSCS--CEEEEEEE
T ss_pred CCCCceEEEecCCC--CCceEEEE
Confidence 57887777765433 45555443
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=87.94 E-value=6.4 Score=36.51 Aligned_cols=90 Identities=8% Similarity=-0.024 Sum_probs=49.8
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc----cCCCCcEEEeHHHHHhhhccCCCcEEEEc-ccCceeee
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK----FDHPNRLFSSISLAWKNCQRDTSDVKVHT-TFGDLLRS 229 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l----~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~-~~G~ll~t 229 (330)
.+.++++|+++.|+.+=+..+.|.. ++.+ |.....+ .+|.+.+-+..-.+|- +-...+.|...+ .+|+.+++
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~I~~-~~~d-G~~~~~~~~~~~~~P~giav~~~~ly~-td~~~~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHVIER-ANLD-GSHRKAVISQGLPHPFAITVFEDSLYW-TDWHTKSINSANKFTGKNQEI 281 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEE-EETT-SCSCEEEECSSCSSEEEEEEETTEEEE-EETTTTEEEEEETTTCCSCEE
T ss_pred cceEEEeCCCCEEEEEECCCCEEEE-EeCC-CCceEEEEeCCCCCceEEEEECCEEEE-ecCCCCeEEEEEccCCCccEE
Confidence 4678999988888888777788888 8885 4322221 3344444212111111 223344555444 57777777
Q ss_pred cCCCCCCCCCcEEEe-CCCcc
Q psy682 230 LDPPSGFASPESVVM-SREGV 249 (330)
Q Consensus 230 L~~h~~~~~v~~v~f-S~dG~ 249 (330)
+..... .+..|++ .|..|
T Consensus 282 i~~~~~--~p~gi~v~~~~~q 300 (349)
T 3v64_C 282 IRNKLH--FPMDIHTLHPQRQ 300 (349)
T ss_dssp EECSCS--CCCCEEEECGGGS
T ss_pred eccCCC--CCceEEEEccccC
Confidence 764433 4555554 34433
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=87.03 E-value=4.5 Score=37.08 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=15.3
Q ss_pred CCcEEEeCCCccEEEEccCC
Q psy682 238 SPESVVMSREGVIVVNYERG 257 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~~~~ 257 (330)
.++.||++|+++.|.-.++.
T Consensus 226 vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 226 VLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECCC
Confidence 67899999998877665544
No 262
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=86.95 E-value=2.5 Score=43.42 Aligned_cols=34 Identities=6% Similarity=-0.056 Sum_probs=24.6
Q ss_pred EecCCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682 160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH 195 (330)
Q Consensus 160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH 195 (330)
++..+..++. |+.|+.||. |+.++|+++-.+.-.
T Consensus 482 ~~tagglvf~-gt~dg~l~a-~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 482 LSTAGNLVFE-GSADGRVIA-YAADTGEKLWEQPAA 515 (689)
T ss_dssp EEETTTEEEE-ECTTSEEEE-EETTTCCEEEEEECS
T ss_pred ceECCCEEEE-ECCCCcEEE-EECCCCccceeeeCC
Confidence 4555656555 568999999 999999987555433
No 263
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=86.78 E-value=12 Score=39.42 Aligned_cols=113 Identities=11% Similarity=0.041 Sum_probs=70.4
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcE-EEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRL-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
..+|+.+.++.|+.+-+..+.|++ .+++ |+...++.. ....| +.. -.+.|.-.| ..+.|..-+.+|..++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v-~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSV-ADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE-EETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEE-EeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceE
Confidence 467788888788888878888988 8885 654444432 11112 222 112232112 1245666677888777
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCceeeec
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~las~ 272 (330)
+|....- ..++.|++.+++..|..++ .+.|..+.+||..+..+
T Consensus 551 ~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 551 SLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 7654221 3789999998766665553 66799999999866554
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=86.34 E-value=1.5 Score=40.32 Aligned_cols=109 Identities=8% Similarity=-0.100 Sum_probs=70.6
Q ss_pred EEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcE---EE-eHHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682 157 CFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRL---FS-SISLAWKNCQRDTSDVKVHTT-FGDLLRS 229 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~V---ia-St~~lW~~SgS~Dgtvkl~~~-~G~ll~t 229 (330)
-+.|+ |+. |+.|...++ +|+. +++++|++++.+.-..... ++ .--++|. ..-.++++.+++. +++++++
T Consensus 47 GL~~~-~~~-LyestG~~g~S~v~~-vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~-ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 47 GFFYR-NGY-FYESTGLNGRSSIRK-VDIESGKTLQQIELGKRYFGEGISDWKDKIVG-LTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEE-TTE-EEEEEEETTEEEEEE-ECTTTCCEEEEEECCTTCCEEEEEEETTEEEE-EESSSSEEEEEETTTCCEEEE
T ss_pred eEEEE-CCE-EEEECCCCCCceEEE-EECCCCcEEEEEecCCccceeEEEEeCCEEEE-EEeeCCEEEEEECccCcEEEE
Confidence 45577 664 455555554 8999 9999999877664333211 11 1223444 2345788888875 7999999
Q ss_pred cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccC
Q psy682 230 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESH 274 (330)
Q Consensus 230 L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~ 274 (330)
+.-.. ....+++||+.|+.. +.+.+..+.+. .+.+++...
T Consensus 123 i~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 123 FNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 87532 334556788766665 46778888776 677777664
No 265
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=86.07 E-value=20 Score=32.55 Aligned_cols=15 Identities=0% Similarity=-0.223 Sum_probs=7.6
Q ss_pred cCCeEEEeeecccccc
Q psy682 173 WDNSFREPFTTMYLAL 188 (330)
Q Consensus 173 ~D~tirl~w~~~~g~l 188 (330)
.++.+.. ++.++|++
T Consensus 196 ~~g~l~~-~d~~tG~~ 210 (376)
T 3q7m_A 196 DNGRVSA-VLMEQGQM 210 (376)
T ss_dssp TTTEEEE-EETTTCCE
T ss_pred CCCEEEE-EECCCCcE
Confidence 3555555 55555544
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=85.84 E-value=0.76 Score=42.49 Aligned_cols=111 Identities=6% Similarity=-0.156 Sum_probs=71.4
Q ss_pred EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EEe-HHHHHhhhccCCCcEEEEcc-cCceeeecCC
Q psy682 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP 232 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~ 232 (330)
-+.|+ ++.|+.|...++.|+. +++++|+.++.+.+-.-.- ++- --+||. ..-.++.+.+++. ++++++++.-
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~-iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~-ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQ-LSLESAQPVWMERLGNIFAEGLASDGERLYQ-LTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEE-CCSSCSSCSEEEECTTCCEEEEEECSSCEEE-EESSSCEEEEEETTTTEEEEEEEC
T ss_pred eEEEE--CCEEEEEcCCCCEEEE-EECCCCcEEeEECCCCcceeEEEEeCCEEEE-EEccCCEEEEEECCcCcEEEEEeC
Confidence 34454 4566777778888999 9999999887762221110 111 223444 3446788888875 7999999985
Q ss_pred CCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccCcc
Q psy682 233 PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHND 276 (330)
Q Consensus 233 h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~~~ 276 (330)
. + ....+++||+.|+.. +.+.++.+.+. ++.+++.....
T Consensus 135 ~-~----eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 135 S-G----EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp S-S----CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred C-C----ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 3 2 234455788876655 47778887654 57777766543
No 267
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=81.74 E-value=44 Score=33.19 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=25.5
Q ss_pred CCcEEEeCCC-ccEEEEc-cCCeEEEEeeCCceeeec
Q psy682 238 SPESVVMSRE-GVIVVNY-ERGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 238 ~v~~v~fS~d-G~~l~s~-~~~~~~~~s~nG~~las~ 272 (330)
.+..|++.++ |.+.|+- ...+|+.++++|..-...
T Consensus 445 ~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 445 DVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 6889999997 8877664 578899999988755443
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=81.18 E-value=9 Score=36.76 Aligned_cols=111 Identities=7% Similarity=-0.125 Sum_probs=59.0
Q ss_pred eEEEEecCCCeEEEeeccCCeE--EEeeeccccccc--ccc--cCCCCcEEEe--HHHHHhhhccCCCcEEEEcccCcee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSF--REPFTTMYLALQ--EGK--FDHPNRLFSS--ISLAWKNCQRDTSDVKVHTTFGDLL 227 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~ti--rl~w~~~~g~l~--~~l--~gH~d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~ll 227 (330)
..+++++||++|+++.+..+.+ ++-|-...|++. ..+ ..|..-|.+. .=.+|- +-..++.|..++.+|..+
T Consensus 182 ~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv-~d~~~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 182 RTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF-NSWNAGQVFRYDFTTQET 260 (430)
T ss_dssp EEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEE-EETTTTEEEEEETTTTEE
T ss_pred ceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEE-EECCCCEEEEEECCCCcE
Confidence 5788999999888887643322 220222345443 111 2333333221 111111 222345566666655544
Q ss_pred eecCCCCCCCCCcEEEeCCCccE-EEEc-cCCeEEEEeeCCc
Q psy682 228 RSLDPPSGFASPESVVMSREGVI-VVNY-ERGHIAAFTMNGN 267 (330)
Q Consensus 228 ~tL~~h~~~~~v~~v~fS~dG~~-l~s~-~~~~~~~~s~nG~ 267 (330)
..+........++.|+|+|+|+. .++- ..+.+..|..||.
T Consensus 261 ~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 261 TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK 302 (430)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence 22211111126899999999994 3433 5788999999873
No 269
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=79.90 E-value=36 Score=31.05 Aligned_cols=29 Identities=10% Similarity=-0.114 Sum_probs=21.6
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTM 184 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~ 184 (330)
.+.++++|+++.|+.+=...+.|.. ++.+
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~-~d~d 196 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHK-SNLD 196 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEE-EETT
T ss_pred ccEEEEeccCCEEEEEECCCCEEEE-EcCC
Confidence 4678889888887877666677777 7774
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=79.20 E-value=34 Score=30.70 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=14.7
Q ss_pred CCcEEEeCCCccEEEEccCC
Q psy682 238 SPESVVMSREGVIVVNYERG 257 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~~~~ 257 (330)
..+.||+.|+++.|.-.++.
T Consensus 205 vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECCC
Confidence 67899999987766555443
No 271
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=78.38 E-value=62 Score=32.94 Aligned_cols=107 Identities=9% Similarity=0.205 Sum_probs=61.8
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC--------CCCcE--EE--eHHH-HHhhhccCCCcEEEEcc
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--------HPNRL--FS--SISL-AWKNCQRDTSDVKVHTT 222 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--------H~d~V--ia--St~~-lW~~SgS~Dgtvkl~~~ 222 (330)
.+++..++|..-+ |..++.|.. |+..+++...-... ..+.| ++ +.=. +| -|+.++-+.+++.
T Consensus 360 ~~i~~d~~g~lWi--Gt~~~Gl~~-~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lW--igt~~~Gl~~~d~ 434 (795)
T 4a2l_A 360 SCIVEDKDKNLWI--GTNDGGLNL-YNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVY--IGTHAGGLSILHR 434 (795)
T ss_dssp EEEEECTTSCEEE--EESSSCEEE-ECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEE--EEETTTEEEEEET
T ss_pred EEEEECCCCCEEE--EECCCCeEE-EcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEE--EEeCcCceeEEeC
Confidence 4666777887644 335667877 88766654322111 12334 21 1233 66 3666555666654
Q ss_pred -cCceeeecCC-----CCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeee
Q psy682 223 -FGDLLRSLDP-----PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRH 271 (330)
Q Consensus 223 -~G~ll~tL~~-----h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las 271 (330)
+|+. +.+.. +.. .|.++...++|.+.+... +-+..|.++......
T Consensus 435 ~~~~~-~~~~~~~~~l~~~--~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 435 NSGQV-ENFNQRNSQLVNE--NVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTT 485 (795)
T ss_dssp TTCCE-EEECTTTSCCSCS--CEEEEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred CCCcE-EEeecCCCCcCCC--eeEEEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence 4544 33321 223 789999999999888766 457777776554443
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=76.90 E-value=68 Score=32.58 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=55.9
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccc--cCC-CCcE--EE--eHHHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK--FDH-PNRL--FS--SISLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l--~gH-~d~V--ia--St~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
.+++..++|++.+++ .++.+-. ++.++++...-. .+- .+.| |. +.=.+|- |+.+|-|..++...+.++
T Consensus 498 ~~i~~d~~g~lWigt--~~~Gl~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi--~T~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 498 RSIAQDSEGRFWIGT--FGGGVGI-YTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL--ATGEGLVCFPSARNFDYQ 572 (781)
T ss_dssp EEEEECTTCCEEEEE--SSSCEEE-ECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE--EETTEEEEESCTTTCCCE
T ss_pred EEEEEcCCCCEEEEE--cCCCEEE-EeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE--EECCCceEEECCCCCcEE
Confidence 466678889875544 2344555 666544432211 011 1222 11 1223443 333454244444332233
Q ss_pred ecCCCCC--CCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeec
Q psy682 229 SLDPPSG--FASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 229 tL~~h~~--~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~ 272 (330)
.+....+ ...|.++...++|.+-++..++ +..|.++.+.+...
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGNIWASTNTG-ISCYITSKKCFYTY 617 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSCEEEECSSC-EEEEETTTTEEEEE
T ss_pred EccccCCCCCceEEEEEECCCCCEEEEcCCc-eEEEECCCCceEEe
Confidence 3322111 1268899999999999988665 55566665554443
No 273
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=74.20 E-value=77 Score=31.92 Aligned_cols=114 Identities=9% Similarity=-0.016 Sum_probs=65.9
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc-----CCCCcEEEe--HHHHHhhhccCCCcEEEEcccCcee
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF-----DHPNRLFSS--ISLAWKNCQRDTSDVKVHTTFGDLL 227 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~-----gH~d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~ll 227 (330)
...+|+.+.++.|+.+-+..+.|.+ .+++ |+...++. .-.+.++.+ -.+.|.--| ..+.|..-+.+|..+
T Consensus 86 P~GlAvD~~~~~ly~~d~~~~~I~v-~~~d-G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTDSETNRIEV-SNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSR 162 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEE-EETT-SCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred cCeEEEEecCCEEEEEeCCCCEEEE-EECC-CCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCce
Confidence 3567788877777888777888888 7875 55433332 222322322 111222111 122333335577766
Q ss_pred eecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCceeeec
Q psy682 228 RSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 228 ~tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~las~ 272 (330)
++|..... ..++.|+++++++.|..++ .+.|..+..||.....+
T Consensus 163 ~~l~~~~~-~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 208 (619)
T 3s94_A 163 FIIINSEI-YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 208 (619)
T ss_dssp EEEECSSC-SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--
T ss_pred EEEEeCCC-CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE
Confidence 66643222 3789999999876665553 66788889999655443
No 274
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=73.69 E-value=43 Score=30.60 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=23.1
Q ss_pred cccCCCcEEEeecccccccceeecCCCceeEEEeC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALS 36 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafS 36 (330)
|.+.+|.|+..|+++|+.+.++-......-.+++.
T Consensus 70 stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~ 104 (268)
T 3nok_A 70 STGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD 104 (268)
T ss_dssp EETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC
T ss_pred EcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe
Confidence 56678889999999999888762222222345553
No 275
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=72.22 E-value=89 Score=31.77 Aligned_cols=102 Identities=10% Similarity=0.151 Sum_probs=54.0
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC------CCCcE--EE--eHHHHHhhhccCCCcEEEEcc-cC
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD------HPNRL--FS--SISLAWKNCQRDTSDVKVHTT-FG 224 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g------H~d~V--ia--St~~lW~~SgS~Dgtvkl~~~-~G 224 (330)
.++...++|+..+++ + +.+.+ |+.++++...-... +.+.| +. +.=.+|- |+.+| +..++. ++
T Consensus 455 ~~i~~d~~g~lwigt-~--~Gl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi--gt~~G-l~~~~~~~~ 527 (795)
T 4a2l_A 455 YAILPDGEGNLWLGT-L--SALVR-FNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI--GGEEG-LSVFKQEGL 527 (795)
T ss_dssp EEEEECSSSCEEEEE-S--SCEEE-EETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE--EESSC-EEEEEEETT
T ss_pred EEEEECCCCCEEEEe-c--CceeE-EeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE--EeCCc-eEEEeCCCC
Confidence 466667788875544 2 45666 78766654322211 12333 11 1223453 33344 444443 44
Q ss_pred ceeeecCC-------CCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCcee
Q psy682 225 DLLRSLDP-------PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL 269 (330)
Q Consensus 225 ~ll~tL~~-------h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~l 269 (330)
+. .+.. +.. .|.+|...++|++.++... -+..|.++....
T Consensus 528 ~~--~~~~~~~~~~l~~~--~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 528 DI--QKASILPVSNVTKL--FTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI 574 (795)
T ss_dssp EE--EECCCSCSCGGGGS--CEEEEEECTTSCEEEEESS-CEEEEETTTTEE
T ss_pred eE--EEecCCCCCCCCCC--eeEEEEECCCCCEEEEeCC-CceeECCCCCcE
Confidence 44 3321 223 7899999999998877654 455555544433
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=69.57 E-value=32 Score=30.97 Aligned_cols=114 Identities=15% Similarity=0.067 Sum_probs=66.7
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccc---cccccccc----CCCCcEEEe--HHHHHhhhccCCCcEEEEcccCce
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMY---LALQEGKF----DHPNRLFSS--ISLAWKNCQRDTSDVKVHTTFGDL 226 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~---g~l~~~l~----gH~d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~l 226 (330)
..+++.++++.|+.+-...+.|.. ++.++ +.....+. ....-+.+. .-.+|- +-+..+.|.+.+.+|+.
T Consensus 33 ~g~~~d~~~~~ly~~D~~~~~I~~-~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~-~d~~~~~I~~~~~~g~~ 110 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLSQRMICS-TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVK 110 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-EEC--------CEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSSS
T ss_pred EEEEEEeCCCEEEEEECCCCcEEE-EECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEE-EECCCCEEEEEeCCCCc
Confidence 467788887777888777888888 88763 12222111 222333221 111111 33456778888888887
Q ss_pred eeecCCCCCCCCCcEEEeCCCcc-EEEEc-cC-CeEEEEeeCCceeeec
Q psy682 227 LRSLDPPSGFASPESVVMSREGV-IVVNY-ER-GHIAAFTMNGNRLRHE 272 (330)
Q Consensus 227 l~tL~~h~~~~~v~~v~fS~dG~-~l~s~-~~-~~~~~~s~nG~~las~ 272 (330)
.+++..... ..++.|++.|++. +.++. +. +.|..+.+||+....+
T Consensus 111 ~~~~~~~~~-~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 111 RKTLFRENG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp EEEEEECTT-CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred eEEEEECCC-CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE
Confidence 776643211 2789999998655 44443 33 6888888999765443
No 277
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=69.19 E-value=84 Score=31.74 Aligned_cols=108 Identities=9% Similarity=-0.012 Sum_probs=60.0
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CC-CcEEEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HP-NRLFSS--ISLAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~-d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
..+|+.+.++.|+.+-+..+.|.+ .+++ |+....+.. .. +.++.+ -.+.|.-.| ..+.|..-+.+|..++
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v-~~~d-G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEV-SKLD-GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERT 159 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE-EETT-STTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEE-EecC-CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceE
Confidence 356677666666777666677777 6764 543333321 11 111221 111121111 1233333456777666
Q ss_pred ecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCce
Q psy682 229 SLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNR 268 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~ 268 (330)
.|-..- ..++.|++.++++.|..++ .+.|..+..+|..
T Consensus 160 ~l~~~~--~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 160 TLVPNV--GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp EEECSC--SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEECCC--CCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence 654322 3789999999877776664 6678888888853
No 278
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=68.55 E-value=67 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=23.1
Q ss_pred CCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682 238 SPESVVMSREGVIVVNY--ERGHIAAFTMN 265 (330)
Q Consensus 238 ~v~~v~fS~dG~~l~s~--~~~~~~~~s~n 265 (330)
.++.|+|||||+.|.-+ ..+.+..|..+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 68999999999877666 37788888875
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=68.24 E-value=67 Score=28.75 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=60.6
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccc----ccc-----------cCCCCcEEEe-HHHHHhhhccCCCcEEE
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ----EGK-----------FDHPNRLFSS-ISLAWKNCQRDTSDVKV 219 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~----~~l-----------~gH~d~ViaS-t~~lW~~SgS~Dgtvkl 219 (330)
..+++.|+++.|+++.-.+. .++ |..+ |.+. +.+ .+-++.-+-+ |=.+|-+| ...+.+..
T Consensus 124 EGLA~d~~~~~L~va~E~~p-~~i-~~~~-g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS-~~s~~L~~ 199 (255)
T 3qqz_A 124 EGLAYSRQDHTFWFFKEKNP-IEV-YKVN-GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS-HESRALQE 199 (255)
T ss_dssp EEEEEETTTTEEEEEEESSS-EEE-EEEE-STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEE-TTTTEEEE
T ss_pred ceEEEeCCCCEEEEEECcCC-ceE-EEEc-ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEE-CCCCeEEE
Confidence 46778999877677654443 455 5553 3111 111 1111111212 33344333 23345555
Q ss_pred EcccCceeeecCCCCC-------CCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682 220 HTTFGDLLRSLDPPSG-------FASPESVVMSREGVIVVNYERGHIAAFTMNG 266 (330)
Q Consensus 220 ~~~~G~ll~tL~~h~~-------~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG 266 (330)
.+.+|+.+..+.=..+ ...++.|+|.++|.+.++.....+..|+..+
T Consensus 200 ~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 200 VTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp ECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC--
T ss_pred EcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEecC
Confidence 7889987765433222 2478999999999999998777888887654
No 280
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=67.27 E-value=16 Score=32.97 Aligned_cols=110 Identities=7% Similarity=-0.085 Sum_probs=66.4
Q ss_pred EEEEecCCCeEEEeeccC--CeEEEeeecccccccccccCCCCcE---EE-eHHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682 157 CFVTTVDSRFLLACGFWD--NSFREPFTTMYLALQEGKFDHPNRL---FS-SISLAWKNCQRDTSDVKVHTT-FGDLLRS 229 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D--~tirl~w~~~~g~l~~~l~gH~d~V---ia-St~~lW~~SgS~Dgtvkl~~~-~G~ll~t 229 (330)
-+.|.. +. |+.+...+ .+|+. .++++|++++.+.-..... ++ .--+||. ..-.++++.+++. +++++++
T Consensus 25 GL~~~~-~~-LyestG~~g~S~v~~-vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~-ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 25 GLFYLR-GH-LYESTGETGRSSVRK-VDLETGRILQRAEVPPPYFGAGIVAWRDRLIQ-LTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEET-TE-EEEEECCTTSCEEEE-EETTTCCEEEEEECCTTCCEEEEEEETTEEEE-EESSSSEEEEEETTTTEEEEE
T ss_pred cEEEEC-CE-EEEECCCCCCceEEE-EECCCCCEEEEEeCCCCcceeEEEEeCCEEEE-EEeeCCEEEEEECCcCcEEEE
Confidence 345664 44 45554444 48999 9999999877664322211 11 1223343 2345788888875 7999999
Q ss_pred cCCCCCCCCCcEEEeCCCccEE-EEccCCeEEEEeeC-CceeeeccCc
Q psy682 230 LDPPSGFASPESVVMSREGVIV-VNYERGHIAAFTMN-GNRLRHESHN 275 (330)
Q Consensus 230 L~~h~~~~~v~~v~fS~dG~~l-~s~~~~~~~~~s~n-G~~las~~~~ 275 (330)
+.-.. ....+++||+.| +|-+.+.|..+.+. .+.+++....
T Consensus 101 i~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 101 FRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp EECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 98532 234455777655 44457778888764 5666766543
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=66.55 E-value=49 Score=31.07 Aligned_cols=36 Identities=6% Similarity=-0.172 Sum_probs=23.5
Q ss_pred EEEEecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF 193 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~ 193 (330)
.+.++.++..|+.+-...++|.. ++..+|+.+..+.
T Consensus 293 P~gl~v~~~~lywtd~~~~~V~~-~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 293 PFSLAVFEDKVFWTDIINEAIFS-ANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEEEETTEEEEEESSSCSEEE-EESSSCCCCEEEE
T ss_pred CEEEEEeCCEEEEecCCCCeEEE-EEcCCCCceEEEe
Confidence 44455567777777755677877 7765677665554
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=66.09 E-value=84 Score=32.86 Aligned_cols=177 Identities=6% Similarity=-0.104 Sum_probs=78.8
Q ss_pred CCcEEEeecccc----cccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCCeeEeee------ccce
Q psy682 6 KGIVEVWRTFNL----ALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSPICHVTA------NTYV 74 (330)
Q Consensus 6 d~~V~lW~~~~g----~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~~~~------~~~~ 74 (330)
.+.|+.++++.. .....+...-....+||+.+.++. | +.+ .....|.+ +..+|....+-. ...+
T Consensus 445 ~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~--L-Y~tD~~~~~I~v--~~ldG~~~~~l~~~~l~~P~gI 519 (791)
T 3m0c_C 445 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN--I-YWTDSVLGTVSV--ADTKGVKRKTLFRENGSKPRAI 519 (791)
T ss_dssp TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE--E-EEEETTTTEEEE--EETTSSSEEEEEECTTCCEEEE
T ss_pred ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc--E-EEEecCCCeEEE--EeCCCCeEEEEEeCCCCCcceE
Confidence 355666666431 222223334556678899887643 2 333 22233433 333443221111 1123
Q ss_pred eccCC-cEEEEEcCC-cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682 75 TLHMP-SVVTVTANH-QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL 151 (330)
Q Consensus 75 ~~~~~-~~v~vS~~~-~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~ 151 (330)
.+.+. +.+-++... ...|.+-+++|...+.+.... ...++.|++.++.. |-.+ ......+....+.+...+.+
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~---l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---IQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS---CSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEE
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC---CCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEE
Confidence 34332 333344322 255777777766544432211 23456677775433 3321 11122223333322222112
Q ss_pred ee----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682 152 RV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK 192 (330)
Q Consensus 152 ~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l 192 (330)
.. ....++++.++.+||.+-...++|.. .+..+|+.+..+
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~-~dk~tG~~~~~l 639 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS-ANRLTGSDVNLL 639 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEE-EETTTCCCCEEE
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEE-EeCCCCcceEEe
Confidence 11 11345556666677877766677766 665566544444
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=65.40 E-value=1.6e+02 Score=32.15 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=118.3
Q ss_pred CCCcEEEeecccc-ccc--ceeecCCCceeEEEeCCCCCcCcc---------eeeeecCccEEEEE---eCCCCCeeEee
Q psy682 5 DKGIVEVWRTFNL-ALL--YAFPSCDSSVRSLALSHDQKYSPM---------MFSTVLDDVCMSLK---FPSNSPICHVT 69 (330)
Q Consensus 5 ~d~~V~lW~~~~g-~~l--~tl~gH~~~V~svafSpdg~~~~l---------~~~~~~~d~~~~v~---Fs~~~~v~~~~ 69 (330)
.+|.+|+.+--=+ +.+ ..|+| -..+|.+..+.+...... +.+.-..+.+.-+. |..+.+.|+++
T Consensus 401 ~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~ 479 (1158)
T 3ei3_A 401 KEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCG 479 (1158)
T ss_dssp GGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEE
T ss_pred CCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEE
Confidence 5677777642100 111 12454 367888876543333111 11221122333333 66789999888
Q ss_pred e---ccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-C
Q psy682 70 A---NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-D 145 (330)
Q Consensus 70 ~---~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~ 145 (330)
. ...+|+++.++..+..+....+.-|.+..+.... .+-..+++++.++ ++ .+.--++. +
T Consensus 480 ~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~--------------~As~n~~~vvva~-g~--~l~~fel~~~ 542 (1158)
T 3ei3_A 480 NVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNIS--------------VASCNSSQVVVAV-GR--ALYYLQIHPQ 542 (1158)
T ss_dssp EETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCC--------------EEEECSSEEEEEE-TT--EEEEEEEETT
T ss_pred EcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEE--------------EEEeCCCEEEEEE-CC--EEEEEEeeCC
Confidence 5 3458999999999998776678889875432111 1112233433321 11 11111110 0
Q ss_pred CCcc----ceeeeeeEEEEecC------CCeEEEeecc-CCeEEEeeeccccccc--ccccCC--CCcE-EEe----HHH
Q psy682 146 NFSQ----KLRVRHNCFVTTVD------SRFLLACGFW-DNSFREPFTTMYLALQ--EGKFDH--PNRL-FSS----ISL 205 (330)
Q Consensus 146 ~~~~----~~~~~~~~~~~spD------g~~i~asg~~-D~tirl~w~~~~g~l~--~~l~gH--~d~V-iaS----t~~ 205 (330)
.+.+ .+.....|+++.|. +++ ++-|.| |+++|+ .++.+.+.+ +.+.+. ...| ++. ...
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~-~aVg~~~d~tv~I-~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPL-CAIGLWTDISARI-LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYL 620 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSE-EEEEETTTTEEEE-EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccE-EEEEECCCCEEEE-EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEE
Confidence 0100 01112257777753 356 666788 999999 999754432 222211 1111 221 011
Q ss_pred HHhhhccCCCcEEEEc---ccCceeee---cCCCCCCCCCcEEEeCCCccEEEE-ccCCeEEEEeeCCceeee
Q psy682 206 AWKNCQRDTSDVKVHT---TFGDLLRS---LDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRH 271 (330)
Q Consensus 206 lW~~SgS~Dgtvkl~~---~~G~ll~t---L~~h~~~~~v~~v~fS~dG~~l~s-~~~~~~~~~s~nG~~las 271 (330)
. .|-.||.+.-.. .+|++..+ ..|. . +|.-..|...|..-+- .++.-...|+-+|++.-+
T Consensus 621 ~---igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-~--pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s 687 (1158)
T 3ei3_A 621 L---CALGDGALFYFGLNIETGLLSDRKKVTLGT-Q--PTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFS 687 (1158)
T ss_dssp E---EEETTSEEEEEEECTTTCCEEEEEEEECCS-S--CCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEE
T ss_pred E---EEeCCCeEEEEEEcCCCCccccceeEEcCC-C--ceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEe
Confidence 1 466677665432 35666422 3332 2 5666666665543222 245555556667765544
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=63.92 E-value=1.3e+02 Score=30.47 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=57.6
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcE--EEe--HHHHHhhhccCCCcEEEEcccCceeee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRL--FSS--ISLAWKNCQRDTSDVKVHTTFGDLLRS 229 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~V--iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~t 229 (330)
.++...++|++.++ ..++.+-. ++..+++...-... ....| |+- .=.+|- |+..|-.++...+|++.+-
T Consensus 410 ~~i~~d~~g~lWig--t~~~Gl~~-~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi--gt~~Gl~~~~~~~~~~~~~ 484 (781)
T 3v9f_A 410 LCSLKDSEGNLWFG--TYLGNISY-YNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI--GTHAGVFVIDLASKKVIHH 484 (781)
T ss_dssp EEEEECTTSCEEEE--ETTEEEEE-ECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE--EETTEEEEEESSSSSCCEE
T ss_pred EEEEECCCCCEEEE--eccCCEEE-EcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE--EECCceEEEeCCCCeEEec
Confidence 45556677876443 34566666 77766654332211 12333 221 223443 3334433333334444332
Q ss_pred cCCC-----CCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeec
Q psy682 230 LDPP-----SGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 230 L~~h-----~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~ 272 (330)
.... .. .|.++...++|.+.+....+-+..|.+++..+...
T Consensus 485 ~~~~~~~~~~~--~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 485 YDTSNSQLLEN--FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF 530 (781)
T ss_dssp ECTTTSSCSCS--CEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred ccCcccccccc--eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence 2111 23 78999999999988876534466677766555443
No 285
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=60.35 E-value=77 Score=31.58 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=21.5
Q ss_pred cccCCCcEEEeecccccccceeecCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCD 27 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~ 27 (330)
.++.+|.+..+|..+|+++..++...
T Consensus 341 ~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 341 HADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSS
T ss_pred EECCCceEEEEECCCCCEeccccccc
Confidence 46788999999999999988876653
No 286
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=59.34 E-value=27 Score=34.72 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=17.9
Q ss_pred ccCCCcEEEeecccccccceeec
Q psy682 3 GGDKGIVEVWRTFNLALLYAFPS 25 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~g 25 (330)
++.+|.+...|..+|+++..++-
T Consensus 322 ~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 322 IDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp ECTTSEEEEEETTTCCEEEEEES
T ss_pred eCCCcEEEEEECCCCCEEeeecc
Confidence 56778888899888988777653
No 287
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=59.21 E-value=32 Score=34.86 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=20.7
Q ss_pred cccCCCcEEEeecccccccceeecCC
Q psy682 2 SGGDKGIVEVWRTFNLALLYAFPSCD 27 (330)
Q Consensus 2 sgs~d~~V~lW~~~~g~~l~tl~gH~ 27 (330)
.++.+|.+.++|..+|+++...+...
T Consensus 319 ~~~~~G~l~~lD~~tG~~l~~~~~~~ 344 (668)
T 1kv9_A 319 QAPKNGFFYVLDRTNGKLISAEKFGK 344 (668)
T ss_dssp ECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred EECCCCEEEEEECCCCCEeccccccc
Confidence 46688999999999999987765443
No 288
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=58.70 E-value=14 Score=37.00 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCeEEEeeecccccccccccCCCC---cEEEe---HHHHHhhhccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEeCC
Q psy682 174 DNSFREPFTTMYLALQEGKFDHPN---RLFSS---ISLAWKNCQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVMSR 246 (330)
Q Consensus 174 D~tirl~w~~~~g~l~~~l~gH~d---~ViaS---t~~lW~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~ 246 (330)
++.+.. |+..+|+.+-....... ..++. ++- .|+.||.+..++ .+|+++.+++-.... .-..+.++.
T Consensus 443 ~g~l~a-~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~----~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~~~~ 516 (571)
T 2ad6_A 443 MGQIRA-FDLTTGKAKWTKWEKFAAWGGTLYTKGGLVW----YATLDGYLKALDNKDGKELWNFKMPSGG-IGSPMTYSF 516 (571)
T ss_dssp CEEEEE-ECTTTCCEEEEEEESSCCCSBCEEETTTEEE----EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEE
T ss_pred CCeEEE-EECCCCCEEEEecCCCCccceeEEECCCEEE----EEcCCCeEEEEECCCCCEEEEEeCCCCc-EeeeEEEEE
Confidence 466777 88877876433321111 11221 222 478899999997 489999988765441 223345667
Q ss_pred CccEEEEc
Q psy682 247 EGVIVVNY 254 (330)
Q Consensus 247 dG~~l~s~ 254 (330)
||++++..
T Consensus 517 ~G~~yv~~ 524 (571)
T 2ad6_A 517 KGKQYIGS 524 (571)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 77766654
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=57.53 E-value=32 Score=34.46 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=18.2
Q ss_pred EEEEecCCCeEEEeeccC-----CeEEEeeecccc
Q psy682 157 CFVTTVDSRFLLACGFWD-----NSFREPFTTMYL 186 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D-----~tirl~w~~~~g 186 (330)
+.++.+||+.++.+|..+ +++.+ |+..++
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~-yd~~t~ 324 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEV-YSPSSK 324 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEE-EETTTT
T ss_pred ceEEecCCeEEEEeCcccCCcccccceE-eCCCCC
Confidence 334567888866666445 45777 777554
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=52.60 E-value=21 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=17.4
Q ss_pred ccCCCcEEEeecccccccceee
Q psy682 3 GGDKGIVEVWRTFNLALLYAFP 24 (330)
Q Consensus 3 gs~d~~V~lW~~~~g~~l~tl~ 24 (330)
++.+|.+.+.|..+|+++...+
T Consensus 329 ~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 329 PDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp ECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCcEEEEEECCCCCEeeccc
Confidence 5678888888888888877654
No 291
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=52.09 E-value=64 Score=30.31 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=12.6
Q ss_pred eEEEEecCCCeEEEee
Q psy682 156 NCFVTTVDSRFLLACG 171 (330)
Q Consensus 156 ~~~~~spDg~~i~asg 171 (330)
..++|.|||++.++.|
T Consensus 143 ~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 143 GRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CCEEECTTSCEEEECB
T ss_pred ccccCCCCCCEEEEEC
Confidence 3688999998766666
No 292
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=51.52 E-value=21 Score=35.79 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=45.0
Q ss_pred CCeEEEeeecccccccccccCCCC---cEEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCC
Q psy682 174 DNSFREPFTTMYLALQEGKFDHPN---RLFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSRE 247 (330)
Q Consensus 174 D~tirl~w~~~~g~l~~~l~gH~d---~ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d 247 (330)
++.|.. |++.+|+.+=....+.. ..++. -+.. .|+.||.++.++. +|++|-.++.+.+. .-.-+.++.|
T Consensus 465 ~G~l~A-~D~~tG~~~W~~~~~~~~~~g~~~tagglvf---~g~~dg~l~A~D~~tG~~lW~~~~~~g~-~a~P~~y~~~ 539 (582)
T 1flg_A 465 VGSLRA-MDPVSGKVVWEHKEHLPLWAGVLATAGNLVF---TGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQD 539 (582)
T ss_dssp SEEEEE-ECTTTCCEEEEEEESSCCCSCCEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET
T ss_pred cceEEE-EECCCCCEEEEecCCCCCcccceEeCCCEEE---EECCCCcEEEEECCCCCEEEEecCCCCc-ccCceEEEEC
Confidence 577887 88888875322211111 11222 1111 5888999999975 89999988876551 2233666677
Q ss_pred ccEEEE
Q psy682 248 GVIVVN 253 (330)
Q Consensus 248 G~~l~s 253 (330)
|+..+.
T Consensus 540 G~qYv~ 545 (582)
T 1flg_A 540 GEQYLG 545 (582)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 765444
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=38.68 E-value=2.6e+02 Score=26.41 Aligned_cols=55 Identities=4% Similarity=-0.016 Sum_probs=29.8
Q ss_pred CCcEEEeecccccccceee--cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCC
Q psy682 6 KGIVEVWRTFNLALLYAFP--SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSN 62 (330)
Q Consensus 6 d~~V~lW~~~~g~~l~tl~--gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~ 62 (330)
++.|+.++..+|+....+. +...+-..+||+|||+. +.+.......|+.+.+...
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~--LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW--AYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE--EEEEETTTTEEEEEEBCTT
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE--EEEEeCCCCEEEEEeCCCC
Confidence 4567777776565422221 22233446999999973 2222233446666666543
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=37.36 E-value=2.6e+02 Score=26.13 Aligned_cols=9 Identities=0% Similarity=0.039 Sum_probs=7.0
Q ss_pred CccccCCCc
Q psy682 118 NLPLTLDPI 126 (330)
Q Consensus 118 ~l~fs~D~~ 126 (330)
-+.+.||+.
T Consensus 189 GIv~~pdg~ 197 (334)
T 2p9w_A 189 GITFDPHSN 197 (334)
T ss_dssp EEEEETTTT
T ss_pred eEEEeCCCC
Confidence 478888887
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=36.35 E-value=1.3e+02 Score=30.09 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=65.4
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcEEEe-HHHHHhhhccCCCcEEEEcccCceeeec
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRLFSS-ISLAWKNCQRDTSDVKVHTTFGDLLRSL 230 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~ViaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL 230 (330)
..+++.+++..|+.+-...+.|+. ++++......++.. ..+-+-+. .-..+.++-+..+.|.+-+.+|+..++|
T Consensus 43 ~~ld~~~~~~~ly~sD~~~~~I~r-~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l 121 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDVSEEAIKR-TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-EEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEEEEeCCCEEEEEECCCCeEEE-EEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence 466788877777877666777877 78753321111111 11111111 1111112455678888888899888777
Q ss_pred CCCCCCCCCcEEEeCCC-ccEEEEc-c-CCeEEEEeeCCceeeec
Q psy682 231 DPPSGFASPESVVMSRE-GVIVVNY-E-RGHIAAFTMNGNRLRHE 272 (330)
Q Consensus 231 ~~h~~~~~v~~v~fS~d-G~~l~s~-~-~~~~~~~s~nG~~las~ 272 (330)
....- ..++.|++.|. |.+.++- + ...+....+||.....+
T Consensus 122 ~~~~l-~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l 165 (619)
T 3s94_A 122 FWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 165 (619)
T ss_dssp ECSSC-SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EeCCC-CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE
Confidence 53222 27899999986 5555543 2 45677778888654433
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=34.93 E-value=2.5e+02 Score=25.06 Aligned_cols=101 Identities=6% Similarity=-0.026 Sum_probs=52.7
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc-C---CCCcE--EE--eHHHHHhhhccCCCcEEEEccc-Cce
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF-D---HPNRL--FS--SISLAWKNCQRDTSDVKVHTTF-GDL 226 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~-g---H~d~V--ia--St~~lW~~SgS~Dgtvkl~~~~-G~l 226 (330)
..++++++++.+ +.+ .++.+++ .+.+.|+--+.+. + +...+ ++ ..-.+| -+..+|++ +++.+ |+-
T Consensus 208 ~~~~~~~~g~~~-~~~-~~G~~~~-s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~--~~g~~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 208 HNMGFTPDGRLW-MIV-NGGKIAF-SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW--LAGGAGAL-LCSQDGGQT 281 (327)
T ss_dssp EEEEECTTSCEE-EEE-TTTEEEE-EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE--EEESTTCE-EEESSTTSS
T ss_pred ceeEECCCCCEE-EEe-CCceEEE-ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE--EEeCCCeE-EEeCCCCcc
Confidence 456688999874 444 4677766 5433354322221 1 11122 11 100111 12235555 33333 443
Q ss_pred eeecC---CCCCCCCCcEEEeCCCccEEEEccCCeEEEEee
Q psy682 227 LRSLD---PPSGFASPESVVMSREGVIVVNYERGHIAAFTM 264 (330)
Q Consensus 227 l~tL~---~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~ 264 (330)
-..+. ++.. .++.|+|.+++++++.+.++.+..+..
T Consensus 282 W~~~~~~~~~~~--~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 282 WQQDVDVKKVPS--NFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEECGGGTTSSS--CCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred cEEcCccCCCCC--CeEEEEEECCCceEEEcCCceEEEEcC
Confidence 33333 1223 578999998889888888887766553
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=33.58 E-value=1.6e+02 Score=29.70 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=66.9
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc----CCCCcEEEe--HH-HHHhhhccCCCcEEEEcccCceee
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF----DHPNRLFSS--IS-LAWKNCQRDTSDVKVHTTFGDLLR 228 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~----gH~d~ViaS--t~-~lW~~SgS~Dgtvkl~~~~G~ll~ 228 (330)
..++|.++...|+.+-..++.|+. ++++ |...+++. +...-+-+. .- +.| +-+..+.|.+-+.+|...+
T Consensus 40 ~~l~~d~~~~~lywtD~~~~~I~r-~~~~-g~~~~~v~~~g~~~P~GlAvD~~~~~LY~--tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 40 SALDFDVTDNRIYWTDISLKTISR-AFMN-GSALEHVVEFGLDYPEGMAVDWLGKNLYW--ADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-EETT-SCSCEEEECSSCSCCCEEEEETTTTEEEE--EETTTTEEEEEETTSTTCE
T ss_pred EEEEEECCCCEEEEEECCCCeEEE-EECC-CCCcEEEEeCCCCCcceEEEEeCCCEEEE--EECCCCEEEEEecCCCcEE
Confidence 467788887788888777888887 8876 43222221 222222111 01 112 3344567777777888777
Q ss_pred ecCCCCCCCCCcEEEeCC-CccEEEEc-c-CCeEEEEeeCCceeee
Q psy682 229 SLDPPSGFASPESVVMSR-EGVIVVNY-E-RGHIAAFTMNGNRLRH 271 (330)
Q Consensus 229 tL~~h~~~~~v~~v~fS~-dG~~l~s~-~-~~~~~~~s~nG~~las 271 (330)
+|....- ..++.|++.| +|.+.++- + ...|..+.+||.....
T Consensus 116 ~l~~~~l-~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 116 VLVWKDL-DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEECSSC-CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred EEEeCCC-CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 6642211 2789999998 56655553 2 5677777888875443
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=32.11 E-value=1.8e+02 Score=26.53 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEecC---CCeEEEeeccC-----CeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeee
Q psy682 158 FVTTVD---SRFLLACGFWD-----NSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRS 229 (330)
Q Consensus 158 ~~~spD---g~~i~asg~~D-----~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~t 229 (330)
++++|| ++.|+++-... ..|.. ++.+.+++.... .++..
T Consensus 80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r-~~~~~~~~~~~~--------------------------------~l~~~ 126 (352)
T 2ism_A 80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVR-LRHLGERGVLDR--------------------------------VVLDG 126 (352)
T ss_dssp EEECTTTTTSCEEEEEEEECTTSSEEEEEE-EEECSSCEEEEE--------------------------------EEEEE
T ss_pred EEECCCCCCCCEEEEEEecCCCCCccEEEE-EEeCCCCcCceE--------------------------------EEEEe
Q ss_pred cCC-CCCCCCCcEEEeCCCccEEEEccC--------------CeEEEEeeCC
Q psy682 230 LDP-PSGFASPESVVMSREGVIVVNYER--------------GHIAAFTMNG 266 (330)
Q Consensus 230 L~~-h~~~~~v~~v~fS~dG~~l~s~~~--------------~~~~~~s~nG 266 (330)
+.. ....+....|+|+|||.+.++-++ +.+.-+.++|
T Consensus 127 ~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 127 IPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp ECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
No 299
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=30.31 E-value=40 Score=34.27 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.1
Q ss_pred cCceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682 223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNY 254 (330)
Q Consensus 223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~ 254 (330)
+|++.|-|.+|.++ .+..++|||||++|...
T Consensus 518 ~g~~~rf~~~P~ga-E~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 518 TGEIRRFMVGPIGC-EVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TCCEEEEEECCTTC-EEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEeCCCCc-cCcCeeECCCCCEEEEE
Confidence 69999999999884 99999999999988553
No 300
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=28.40 E-value=1.6e+02 Score=26.64 Aligned_cols=106 Identities=7% Similarity=-0.020 Sum_probs=59.3
Q ss_pred EEEEecCCCeEEEeeccC-------------CeEEEeeecccccccccccCCCCcEEEe--HHHHHhhhccCCCcEEEE-
Q psy682 157 CFVTTVDSRFLLACGFWD-------------NSFREPFTTMYLALQEGKFDHPNRLFSS--ISLAWKNCQRDTSDVKVH- 220 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D-------------~tirl~w~~~~g~l~~~l~gH~d~ViaS--t~~lW~~SgS~Dgtvkl~- 220 (330)
+--+++||.+|+-+...+ ..|+. .+++.++ ...+.......++. .-+.|. ..+.++.-.|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~-i~~dg~~-~~~l~~~~~~~~s~~g~~Iy~~-~~~~~~~~~Iy~ 133 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR-IKRNGHG-STVLDPDPCIYASLIGNYIYYL-HYDTQTATSLYR 133 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEE-EETTSCC-CEEEECSCEEEEEEETTEEEEE-EESSSSCEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE-EeCCCCc-ceEeecCCccEEEEeCCEEEEE-eecCCCCceEEE
Confidence 344799999988887654 35666 6776443 22232222222221 222232 21344455555
Q ss_pred -cccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCceeee
Q psy682 221 -TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNRLRH 271 (330)
Q Consensus 221 -~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~las 271 (330)
..+|.-.+.|..+. + .+|+|+|+.|...+ +..|..-..+|..-..
T Consensus 134 ~~~dGs~~~~lt~~~----~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 134 IRIDGEEKKKIKNHY----L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL 181 (302)
T ss_dssp EETTSCCCEEEESSC----C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred EECCCCCeEEEeCCC----c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence 45676666666542 2 45789999888664 4567777777765433
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.95 E-value=46 Score=35.55 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=26.5
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccccc
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG 191 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~ 191 (330)
.+.+.++|..++++- +.|+++|+ |++.+|+++.+
T Consensus 239 ~~~~~~~~~~~lftl-~~D~~LRi-Wsl~t~~~v~t 272 (950)
T 4gq2_M 239 ISMIFLSTYNVLVML-SLDYKLKV-LDLSTNQCVET 272 (950)
T ss_dssp EEEEEETTTTEEEEE-ETTCEEEE-EETTTTEEEEE
T ss_pred EEEeecCCCcEEEEE-ECCCEEEE-EECCCCCeEee
Confidence 466678888886665 48999999 99999876544
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=26.34 E-value=1.7e+02 Score=27.90 Aligned_cols=108 Identities=6% Similarity=0.072 Sum_probs=69.6
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-----------EEe--HHHHHhhhccCCCcEEEEcc
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------FSS--ISLAWKNCQRDTSDVKVHTT 222 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------iaS--t~~lW~~SgS~Dgtvkl~~~ 222 (330)
.+..++|..+.|+-=+ -+++++ |++++-..++...=..++| +++ .+--|++.| ....+|+.++
T Consensus 70 dsAIMnP~~~ViALra--g~~LQi-FnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~-~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKA--GKTLQI-FNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG-ESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEE--TTEEEE-EETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST-TCCCEEEEEC
T ss_pred ceeeeCCCccEEEEec--CCeEEE-echHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC-CCCCceeeec
Confidence 4555789888754443 688999 9998776666655567777 233 444466544 6678899888
Q ss_pred cCceeeecCCCCCCCCCcEEEeCCCccEEEEc----c----CCeEEEEeeCCceeeeccCc
Q psy682 223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNY----E----RGHIAAFTMNGNRLRHESHN 275 (330)
Q Consensus 223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~----~----~~~~~~~s~nG~~las~~~~ 275 (330)
.+.|- + ..|-.-.-++|.+.++-. . .|.+-+||..=+.-...+.|
T Consensus 146 ~~~L~----~----~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh 198 (365)
T 2xzh_A 146 HSSLA----G----CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 198 (365)
T ss_dssp CGGGT----T----CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS
T ss_pred chhcc----c----ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeee
Confidence 76652 1 166677778888855432 1 45678888776654444433
No 303
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.47 E-value=40 Score=36.62 Aligned_cols=34 Identities=9% Similarity=-0.005 Sum_probs=26.0
Q ss_pred eEEEEecCCCeEEEeeccCCeEEEeeeccccccccc
Q psy682 156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG 191 (330)
Q Consensus 156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~ 191 (330)
.+.+.++|.+++++-. .|+++|+ |++.+|+++.+
T Consensus 241 vs~~~~~~~~~lftL~-~D~~LRi-Wsl~t~~~v~t 274 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLS-LDYKLKV-LDLSTNQCVET 274 (1139)
T ss_dssp SCCEEETTTTEEEEEB-TTCEEEE-EETTTTEEEEE
T ss_pred EEeeccCCccEEEEEe-CCCEEEE-EECCCCCeEEe
Confidence 3555678888876654 8999999 99998876544
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=21.19 E-value=78 Score=29.76 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=25.0
Q ss_pred eeEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682 155 HNCFVTTVDSRFLLACGFWDNSFREPFTTM 184 (330)
Q Consensus 155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~ 184 (330)
.|-+++|||+++++.+-+..+.|.. |+++
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~-~~~~ 251 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHV-YEKH 251 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEE-EEEC
T ss_pred cCcceECCCCCEEEEEeCCCCeEEE-EEEC
Confidence 3778999999999999888898888 7774
No 305
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.26 E-value=67 Score=33.58 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=22.5
Q ss_pred ecCCCeEEEeeccCCeEEEeeeccccccccc
Q psy682 161 TVDSRFLLACGFWDNSFREPFTTMYLALQEG 191 (330)
Q Consensus 161 spDg~~i~asg~~D~tirl~w~~~~g~l~~~ 191 (330)
..|.+++++- +.|+++|+ |++.+++++.+
T Consensus 228 ~~~~~fLftL-~~Dh~LRi-WsL~t~~lv~t 256 (729)
T 3f7f_A 228 LFHERYLIVL-TQNCHLKI-WDLTSFTLIQD 256 (729)
T ss_dssp EETTTEEEEE-ETTCEEEE-EETTTTEEEEE
T ss_pred ccCCcEEEEE-EcCCeEEE-EEcCCCceEEe
Confidence 5667786665 48999999 99999886543
No 306
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=20.05 E-value=1.7e+02 Score=29.12 Aligned_cols=29 Identities=3% Similarity=-0.061 Sum_probs=20.1
Q ss_pred EEEEecCCCeEEEeeccCCeEEEeeecccc
Q psy682 157 CFVTTVDSRFLLACGFWDNSFREPFTTMYL 186 (330)
Q Consensus 157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g 186 (330)
+.++.+||+.++.+|+.+.++++ |+..++
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~-yd~~t~ 275 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSL-YDSSSD 275 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEE-EEGGGT
T ss_pred cccCCCCCCEEEeCCCCCCceEE-ecCcCC
Confidence 35667888876766666667777 776654
Done!