RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy682
         (330 letters)



>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein,
           CDC4-like protein; PH-beach domains, vesicle
           trafficking, signal transduction; 2.40A {Homo sapiens}
           SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
          Length = 414

 Score = 71.0 bits (173), Expect = 6e-14
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 280 ELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
           ELIPE ++LPEM VN N Y LG  +D   +++VELPPWA + E+FV INR+
Sbjct: 284 ELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRL 334



 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 178 REPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
            EPFTT +L LQ GKFDH +R FSSIS AW+N QRDTSD+K
Sbjct: 243 IEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIK 283


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 57/324 (17%), Positives = 94/324 (29%), Gaps = 151/324 (46%)

Query: 1   MSGGDKGIV--------EVWRTFN------LALLY--------AFPSC--------DS-- 28
            +G  +G+V        + W +F       + +L+        A+P+         DS  
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329

Query: 29  ----------SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVT-ANTYVTLH 77
                     S+ +L     Q Y        ++     L  P+   +  ++  N    L 
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDY--------VNKTNSHL--PAGKQV-EISLVNGAKNL- 377

Query: 78  MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPIL---THPTSNN 134
              VV+                             G PP +L   L+  L     P+  +
Sbjct: 378 ---VVS-----------------------------G-PPQSL-YGLNLTLRKAKAPSGLD 403

Query: 135 NAPVPKRHLGDNFSQ-KLRVRHNCFVTTVDSRFL-LACGFWDNSFREPFTTMYL--ALQE 190
            + +P       FS+ KL+  +         RFL +A          PF +  L  A   
Sbjct: 404 QSRIP-------FSERKLKFSN---------RFLPVAS---------PFHSHLLVPASDL 438

Query: 191 GKFDHPNRLFSSISLAWKNCQRDTSDVKV---HTTFGDLLRSLDPPSGFASPESVVMSRE 247
              D          L   N   +  D+++    T  G  LR L         E +V    
Sbjct: 439 INKD----------LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS----ISERIVD--- 481

Query: 248 GVIV---VNYERG------HIAAF 262
             I+   V +E        HI  F
Sbjct: 482 -CIIRLPVKWETTTQFKATHILDF 504



 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 90/232 (38%)

Query: 29  SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANH 88
           S R L LSH                  SL+                 L +P     TA+ 
Sbjct: 5   STRPLTLSHG-----------------SLEH---------------VLLVP-----TASF 27

Query: 89  QFAINRWNPDYAASIQSPS--YA--ETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG 144
             A       +   +  P+  +A  + P +P     L     L + +S     V    +G
Sbjct: 28  FIASQLQE-QFNKILPEPTEGFAADDEPTTP---AELVGK-FLGYVSS----LVEPSKVG 78

Query: 145 DNFSQKLRVRHNCFVTTVDSRFL-------LACGFWDNS------FREPFTTMYLALQEG 191
             F Q L +    F    ++ +L       LA      +       +E       A    
Sbjct: 79  Q-FDQVLNLCLTEF----ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133

Query: 192 KF----DHPNRLFSSISLAWKNCQRDTSDVKVHTTFG---------DLLRSL 230
           K        + LF ++            + ++   FG         + LR L
Sbjct: 134 KRPFDKKSNSALFRAVG---------EGNAQLVAIFGGQGNTDDYFEELRDL 176



 Score = 35.8 bits (82), Expect = 0.022
 Identities = 45/249 (18%), Positives = 69/249 (27%), Gaps = 99/249 (39%)

Query: 134  NNAPVPKR---HLGDNFSQKLRVRHN--CFVTTVDSRFLLACGFWDNSFREPFTTMYLAL 188
            NN   P     H G    +++R  ++   F T VD +             + F  +    
Sbjct: 1667 NN---PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL---------KTEKIFKEINEHS 1714

Query: 189  QEGKFDHPN-----------RLFSSISLA----WKNCQRDTSDVKV--HTTFGDLLRSLD 231
                F                L   +  A     K+     +D     H        SL 
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTL-MEKAAFEDLKSKGLIPADATFAGH--------SL- 1764

Query: 232  PPSG-------FASPESVVMSREGVI-VVNYERGHIAAFTM---------------NGNR 268
               G        A     VMS E ++ VV Y RG      +               N  R
Sbjct: 1765 ---GEYAALASLAD----VMSIESLVEVVFY-RGMTMQVAVPRDELGRSNYGMIAINPGR 1816

Query: 269  LRHESHNDNLQELIPEL-----FFLPEMLVNSN--G--Y-CLGKTED-----NV------ 307
            +      + LQ ++  +     + + E +VN N     Y   G         NV      
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLV-E-IVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874

Query: 308  -NINNVELP 315
              I+ +EL 
Sbjct: 1875 QKIDIIELQ 1883



 Score = 29.6 bits (66), Expect = 1.8
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 39   QKYSPMMFSTVLDDVCMSLK-FPSNSPICHVTANTYVTLHMPSVV-TVTANHQFAI 92
            + YS M+F T++D    + K F   +       +T  T      + + T   Q A+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINE-----HSTSYTFRSEKGLLSATQFTQPAL 1736


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.0 bits (82), Expect = 0.017
 Identities = 37/281 (13%), Positives = 70/281 (24%), Gaps = 73/281 (25%)

Query: 49  VLDDVCMS--LK-FPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS 105
           VL +V  +     F  +  I   T    VT  + +  T   +         PD   S+  
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-- 306

Query: 106 PSYAETPGSPPGNLP---LTLDPILT---------HPTSNNNAPVPKRHLGDNFSQKLRV 153
               +     P +LP   LT +P               + +N    K    D  +  +  
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW---KHVNCDKLTTIIES 361

Query: 154 RHNCFVTTVDSRFLLACG---------------FWDNS-FREPFTTM-----YLALQEGK 192
             N        +                      W +    +    +     Y  +++  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-- 419

Query: 193 FDHPNRLFSSI-SLAWKNCQRDTSDVKVHTTFGD---LLRSLDPPSGFASPESVVMSREG 248
              P     SI S+  +   +  ++  +H +  D   + ++ D                 
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------- 470

Query: 249 VIVVNYERGHIAAFTMNGNRLRH--ESHNDNLQELIPELFF 287
                Y   HI           H     +     L   +F 
Sbjct: 471 ----QYFYSHIG---------HHLKNIEHPERMTLFRMVFL 498



 Score = 34.1 bits (77), Expect = 0.068
 Identities = 44/343 (12%), Positives = 75/343 (21%), Gaps = 123/343 (35%)

Query: 89  QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG---- 144
           +F       +Y   + SP        P     + ++        N+N    K ++     
Sbjct: 81  KFVEEVLRINYKF-LMSP-IKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQP 136

Query: 145 -DNFSQKL-RVRHNCFVT---------TV-------DSRFLLACG---FW--------DN 175
                Q L  +R    V          T          +         FW          
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 176 SFREPFTTMY------------------LALQEGKFDHPNRLFSS----ISL-------- 205
           +  E    +                   L +   +     RL  S      L        
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQN 255

Query: 206 --AWK----NCQ-----RDTS-------DVKVHTTFGDLLRSLDPPSG---FAS------ 238
             AW     +C+     R              H +      +L P               
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 239 ---PESVVMSREGVIVVNYERGHIAAFTMNG----NRLRHESHNDNLQELIPELFF--LP 289
              P  V+ +    + +      IA    +G    +  +H +  D L  +I E     L 
Sbjct: 316 QDLPREVLTTNPRRLSI------IAESIRDGLATWDNWKHVN-CDKLTTII-ESSLNVLE 367

Query: 290 EMLVNSNGYCLGKTEDNVNINNVELPP------WASSPEQFVR 326
                     L     + +I     P       W    +  V 
Sbjct: 368 PAEYRKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVM 405


>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
           beta-propeller, translation; 1.95A {Drosophila
           melanogaster} SCOP: b.68.9.1
          Length = 286

 Score = 35.2 bits (82), Expect = 0.018
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 217 VKVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLR 270
           V +    G++L           P  VV++ +  + + +     +  F   G  LR
Sbjct: 144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR 198



 Score = 32.5 bits (75), Expect = 0.13
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 217 VKVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLR 270
           ++++  +G  +R          P  V +  +G +IVV  +   +  F  NGN L 
Sbjct: 102 IQIYNQYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH 155



 Score = 32.5 bits (75), Expect = 0.16
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 217 VKVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMNGNRLRH 271
           VKV    G  LR +        P  V ++  G +++ +     ++  FT +G  +  
Sbjct: 187 VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISA 243



 Score = 27.9 bits (63), Expect = 3.8
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 4/62 (6%)

Query: 211 QRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRL 269
           Q     +  H  FG+          F  P  V ++ +  +IV +     I  F   G   
Sbjct: 7   QIKRQRMIYHCKFGEFGVM---EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK 63

Query: 270 RH 271
             
Sbjct: 64  FQ 65


>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
           {Homo sapiens}
          Length = 368

 Score = 33.0 bits (76), Expect = 0.13
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 2   SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD 38
           + G  G    W       L      D  + +   +H+
Sbjct: 290 TVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326


>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
           protein, ligand-BIND protein; 2.10A {Pyrobaculum
           aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
          Length = 141

 Score = 28.4 bits (64), Expect = 1.7
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 225 DLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRH 271
           D+LR++        P   + +   + V++ +  H+AA  M  + +RH
Sbjct: 58  DILRAVAQRLDLDGPAMPIANSP-ITVLDTDPVHVAAEKMRRHNIRH 103


>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
           activation, cytochrome C, procaspase-9, A nucleotide,
           cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
           3iyt_A* 3iza_A*
          Length = 1249

 Score = 29.8 bits (67), Expect = 1.7
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 2   SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
           +G +   +++W               +SV     S D + 
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757



 Score = 28.6 bits (64), Expect = 3.7
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 2    SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
            S       ++W    L+ L+     +  VR  A S D   
Sbjct: 1102 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1141



 Score = 28.3 bits (63), Expect = 5.0
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 2   SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
           S G    ++V++      L    + +  V   A S D  Y
Sbjct: 632 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671



 Score = 27.9 bits (62), Expect = 5.5
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 2    SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
             G + G +++    N  +  +      +VR +  + D K 
Sbjct: 978  FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017



 Score = 27.5 bits (61), Expect = 8.5
 Identities = 4/40 (10%), Positives = 14/40 (35%)

Query: 2   SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
           +      V++W +    L++ +      V     ++   +
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 713



 Score = 27.5 bits (61), Expect = 9.2
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 2   SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
               +  VE+W   +   +       S V  +  S D   
Sbjct: 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896


>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
           ATP-binding, cytoplasm, nucleotide-binding, nucleus,
           phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
           sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
           3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
           3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
          Length = 336

 Score = 29.2 bits (66), Expect = 1.8
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 168 LACG---FWDNSFREPFTTMYLALQEGKFDHPNRLFSSIS 204
           L CG   F+ N+ +     M   ++ G++  PN  +S +S
Sbjct: 222 LLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVS 261


>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
          adenylate analog, deletion mutant, ligase; HET: TSB;
          1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
          1evk_A* 1fyf_A* 1kog_A*
          Length = 401

 Score = 29.1 bits (66), Expect = 1.9
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 37 HDQKYSPMMFSTVLDDVCMSLKFPSNSPICHV 68
          H   Y   MF+T  ++    +K P N P  HV
Sbjct: 68 HWDNYKDAMFTTSSENREYCIK-PMNCP-GHV 97


>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
           genomics, midwest center for structu genomics,
           TOLB-like, Ca binding; 2.55A {Escherichia coli}
          Length = 255

 Score = 28.8 bits (64), Expect = 2.1
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 221 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYER-GHIAAFTMNGN 267
           TT GDL+R++ P       E++    +   V++ ER   I   ++  N
Sbjct: 55  TTNGDLIRTI-PLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101


>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
           genomics, PSI, protein structure initiative; 1.80A
           {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
          Length = 270

 Score = 28.4 bits (64), Expect = 2.8
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 217 VKVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLR 270
           V +     +      P  G   PE + +  +G V V +     +           
Sbjct: 90  VTLAAGSNNQTVL--PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142



 Score = 27.2 bits (61), Expect = 7.8
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 9/62 (14%)

Query: 211 QRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRL 269
            +  +     T            +G  +P +V +  +  V V +     +   T   +  
Sbjct: 216 VKLLAGSTTSTVLPF--------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267

Query: 270 RH 271
            H
Sbjct: 268 HH 269


>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
           lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
           basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
          Length = 329

 Score = 28.6 bits (64), Expect = 2.8
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 214 TSDVKVHTTFGDLLRSLDPPSG-FASPESVVM-SREG-VIVVNYERGHIAAFTMNGNRLR 270
           +   K  T +G+      P  G F+ P S+ +      + V + E G I  F  +     
Sbjct: 172 SPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231

Query: 271 HESHNDNLQELIPELFFLPEMLVNSNGY 298
            E  + +    +  + ++P  L   NG 
Sbjct: 232 REIKHASFGRNVFAISYIPGFLFAVNGK 259


>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
           protein; 2.50A {Saccharomyces cerevisiae}
          Length = 814

 Score = 28.5 bits (64), Expect = 3.5
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 2   SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
            G D   + V+       +  F +    +RS+A+   + Y
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111



 Score = 27.7 bits (62), Expect = 6.6
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 2  SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
          +    G VE+W       + +    ++ VR+      + +
Sbjct: 30 TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW 69


>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
           translational regulation, protein/RNA, ligase-RNA
           complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
           {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
           d.104.1.1
          Length = 642

 Score = 28.3 bits (64), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 37  HDQKYSPMMFSTVLDDVCMSLKFPSNSPICHV 68
           H   Y   MF+T  ++    +K P N P  HV
Sbjct: 309 HWDNYKDAMFTTSSENREYCIK-PMNCP-GHV 338


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,041,587
Number of extensions: 287499
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 41
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)