RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy682
(330 letters)
>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 304
Score = 70.0 bits (171), Expect = 2e-14
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 280 ELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
ELIPE ++LPEM VN N Y LG +D +++VELPPWA + E+FV INR+
Sbjct: 174 ELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRL 224
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 32.4 bits (72), Expect = 0.059
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
+G D VW D+ V L ++ D
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Score = 26.2 bits (56), Expect = 6.4
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---SPMMFSTVLDDVCMSL 57
+SG ++W F +S + ++ + + L D+
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD 98
+ + S + T V+ + + F N W+
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 30.5 bits (67), Expect = 0.24
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY 41
+S D + VW N + + + V SL Y
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 30.2 bits (66), Expect = 0.33
Identities = 26/270 (9%), Positives = 58/270 (21%), Gaps = 2/270 (0%)
Query: 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--SPMMFSTVLDDVCMSLKF 59
+G D ++ V+ + N L D V +L +H + + D+
Sbjct: 28 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 87
Query: 60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL 119
+ + VT + ++ W +S+
Sbjct: 88 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147
Query: 120 PLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRE 179
+ + H S + + G D +
Sbjct: 148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 207
Query: 180 PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASP 239
+ D R++ + + + + D G
Sbjct: 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRG 267
Query: 240 ESVVMSREGVIVVNYERGHIAAFTMNGNRL 269
+ I F ++ N L
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 29.4 bits (64), Expect = 0.55
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSP 43
+SG V W + L +SV S+A+++ P
Sbjct: 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 29.1 bits (63), Expect = 0.74
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 173 WDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDP 232
E + + L P + + + +T+ V L P
Sbjct: 161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL-P 219
Query: 233 PSGFASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLRH 271
+G +P +V + + V V + + T + H
Sbjct: 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHH 259
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 28.6 bits (62), Expect = 1.00
Identities = 11/78 (14%), Positives = 18/78 (23%)
Query: 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPS 61
SG D ++VW L V S + + S T+ + +
Sbjct: 32 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH 91
Query: 62 NSPICHVTANTYVTLHMP 79
T
Sbjct: 92 TLYGHTSTVRCMHLHEKR 109
Score = 27.5 bits (59), Expect = 2.3
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTV-LDDVCMSLKFP 60
SG + VW ++ S + L + S STV + D+
Sbjct: 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251
Query: 61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGS 114
+ + + +T++ + W+ I++ E+ GS
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 28.1 bits (61), Expect = 1.4
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 236 FASPESVVMSREG-VIVVNYERGHIAAFTMNGNRLRH 271
F P V ++ + +IV + I F G
Sbjct: 22 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQ 58
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 158
Score = 27.3 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 129 HPTSNNNAPVPKRHLGDNFSQKLR 152
NNN VP+RH+ +F QK R
Sbjct: 100 LEIGNNNVSVPERHIPSHF-QKFR 122
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 26.6 bits (57), Expect = 4.6
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 251 VVNYERGHIAAFTMNGNRLRHESHN 275
+V E+GH+A +N E N
Sbjct: 1 MVQVEKGHVAVVFLN----DPERRN 21
>d1ggpb1 b.42.2.1 (B:11-140) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 126
Score = 25.5 bits (55), Expect = 5.5
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 292 LVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR 329
+ +G+C + N + L A + Q + R
Sbjct: 8 IAGRDGFCADVNGEGQNGAAIILKKCAENDNQLWTLKR 45
>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Murine minute virus, strain i [TaxId: 10794]}
Length = 549
Score = 26.0 bits (57), Expect = 7.4
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 71 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETP---GSPPGNLPLTLDPIL 127
TY T +T+ A + A WNP Y S++ + P + P++
Sbjct: 482 VTYGTFFWKGKLTMRAKLR-ANTTWNPVYQVSVEDNGNSYMSVTKWLPTATGNMQSVPLI 540
Query: 128 THPTSNN 134
T P + N
Sbjct: 541 TRPVARN 547
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein,
SHARP {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.5 bits (56), Expect = 8.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 14 TFNLALLYAFPSCDSSVRSLALSH 37
+L FP C+ S L+
Sbjct: 126 NQPAYVLQIFPPCEFSESHLSRLA 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,247,199
Number of extensions: 56174
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 20
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.2 bits)