RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6820
(639 letters)
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 309 bits (795), Expect = e-102
Identities = 109/260 (41%), Positives = 161/260 (61%), Gaps = 8/260 (3%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII 438
Y + + +G+G+F V DK A+K+I K K+ ++ I E+ IL+ + HPNI+
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
+L D ++ ++LYLV+E +GGDLFD + K + SE++++F + + SAL YLH IVH
Sbjct: 61 RLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIVH 120
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF--TVCGTPTYVAPEILNESGYGVK 556
RD+KPEN+L++ G +K+ DFGLA+++ T GTP Y+APE+L GYG
Sbjct: 121 RDLKPENILLDEDG----HVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKA 176
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+D+W+ GVILY LL G PPF + ELF I + FP P W DIS EAK+LI +
Sbjct: 177 VDIWSLGVILYELLTGKPPF-PGDDQLLELFKKIGKPKPPFPPPEW-DISPEAKDLIRKL 234
Query: 617 LESNPDLRFSAEDVLDHPWL 636
L +P+ R +AE+ L HP+
Sbjct: 235 LVKDPEKRLTAEEALQHPFF 254
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 272 bits (697), Expect = 4e-87
Identities = 111/264 (42%), Positives = 160/264 (60%), Gaps = 10/264 (3%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLL-GKKQMIENEVNILRSVNHPNI 437
Y + + +G G+F V + K A+KI+ K K Q E+ ILR ++HPNI
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
++L+D ++ + LYLV+E +GGDLFD +S+ SE+++K + + L YLH N I+
Sbjct: 61 VRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGII 120
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNES-GY 553
HRD+KPEN+L++ +G V+K+ DFGLA+++L+ + T GTP Y+APE+L GY
Sbjct: 121 HRDLKPENILLDENG----VVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGY 176
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTN-DQDELFDDILSGQYGFPSPYWDDISEEAKEL 612
G K+DVW+ GVILY LL G PPF + DQ +L IL F P W SEEAK+L
Sbjct: 177 GPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDL 236
Query: 613 ISHMLESNPDLRFSAEDVLDHPWL 636
I L +P R +AE++L HPW
Sbjct: 237 IKKCLNKDPSKRPTAEEILQHPWF 260
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 233 bits (596), Expect = 8e-72
Identities = 99/266 (37%), Positives = 157/266 (59%), Gaps = 17/266 (6%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNH 434
+ + +G G+F V V K ALKI+ K+K++ KQ+ + NE IL+S+ H
Sbjct: 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRH 60
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN 494
P ++ L + ++ LYLV+E + GG+LF + K+ +F E ++F + AL YLH
Sbjct: 61 PFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSL 120
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGYG 554
IV+RD+KPENLL++ G + +K+ DFG A+RV +T+CGTP Y+APEI+ GYG
Sbjct: 121 DIVYRDLKPENLLLDSDG-Y---IKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYG 176
Query: 555 VKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
+D WA G+++Y +L G+PPF D ++++ IL G+ FPS + S +AK+LI
Sbjct: 177 KAVDWWALGILIYEMLAGYPPFFDDN--PIQIYEKILEGKVRFPSFF----SPDAKDLIR 230
Query: 615 HMLESNPDLRF-----SAEDVLDHPW 635
++L+ + R D+ +HPW
Sbjct: 231 NLLQVDLTKRLGNLKNGVNDIKNHPW 256
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 230 bits (590), Expect = 2e-71
Identities = 104/261 (39%), Positives = 154/261 (59%), Gaps = 22/261 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMD--CALKIIDKSKLLGKKQ--MIENEVNILRSVNHPNIIKL 440
+G G+F V V + KD A+K++ K K++ +K+ E NIL +NHP I+KL
Sbjct: 1 LGKGSFGKVLLV--RKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKL 58
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ T +LYLV+E GG+LF +SK +FSEE ++F + AL YLH I++RD
Sbjct: 59 HYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRD 118
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAPEILNESGYGVKI 557
+KPEN+L++ G H+K L DFGLA+ + T CGTP Y+APE+L GYG +
Sbjct: 119 LKPENILLDADG-HIK-LT--DFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAV 174
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
D W+ GV+LY +L G PPF D+ E+++ IL FP + +S EA++LIS +L
Sbjct: 175 DWWSLGVLLYEMLTGKPPF--YAEDRKEIYEKILKDPLRFP----EFLSPEARDLISGLL 228
Query: 618 ESNPDLRF---SAEDVLDHPW 635
+ +P R AE++ HP+
Sbjct: 229 QKDPTKRLGSGGAEEIKAHPF 249
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 216 bits (553), Expect = 6e-66
Identities = 98/268 (36%), Positives = 138/268 (51%), Gaps = 23/268 (8%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPN 436
+Y + + IG G+F V V K LK ID S + K ++ NEV IL+ +NHPN
Sbjct: 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN 60
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISK----NVKFSEEDS-KFMTQSLASALSYL 491
IIK + ++ +L +V+E GGDL I K F EE + Q L AL YL
Sbjct: 61 IIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQ-LCLALKYL 119
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF----TVCGTPTYVAPEI 547
H I+HRDIKP+N+ + ++K+GDFG++ +VL TV GTP Y++PE+
Sbjct: 120 HSRKILHRDIKPQNIFL----TSNGLVKLGDFGIS-KVLSSTVDLAKTVVGTPYYLSPEL 174
Query: 548 LNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYG-FPSPYWDDIS 606
Y K D+W+ G +LY L PF + EL IL GQY PS Y S
Sbjct: 175 CQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN--LLELALKILKGQYPPIPSQY----S 228
Query: 607 EEAKELISHMLESNPDLRFSAEDVLDHP 634
E + L+S +L+ +P+ R S +L P
Sbjct: 229 SELRNLVSSLLQKDPEERPSIAQILQSP 256
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 210 bits (536), Expect = 2e-63
Identities = 94/264 (35%), Positives = 142/264 (53%), Gaps = 19/264 (7%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ--MIENEVNILRSVNHPNIIKLLD 442
+G G F V V K K+ ALK + K ++ Q I +E IL NHP I+KL
Sbjct: 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+ +Y+++E GG+L+ + F E ++F + A YLH+ I++RD+K
Sbjct: 61 TFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLK 120
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRV--LRPMFTVCGTPTYVAPEILNESGYGVKIDVW 560
PENLL++ +G +K+ DFG A+++ + +T CGTP YVAPEI+ GY +D W
Sbjct: 121 PENLLLDSNG----YVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYW 176
Query: 561 AAGVILYILLCGFPPFVSDTNDQDELFDDILSG--QYGFPSPYWDDISEEAKELISHMLE 618
+ G++LY LL G PPF D D E+++DIL G + FP+ I + AK+LI +L
Sbjct: 177 SLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPN----YIDKAAKDLIKQLLR 232
Query: 619 SNPDLRF-----SAEDVLDHPWLE 637
NP+ R +D+ H W
Sbjct: 233 RNPEERLGNLKGGIKDIKKHKWFN 256
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 200 bits (512), Expect = 1e-60
Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 45/255 (17%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G F V DK A+KII K + + E+ IL+ +NHPNI+KL +
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60
Query: 445 DTNNELYLVIELIKGGDLFDAISKN-VKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKP 503
+ N LYLV+E +GG L D + +N K SE++ + + L YLH N I+HRD+KP
Sbjct: 61 EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKP 120
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRV---LRPMFTVCGTPTYVAPEIL-NESGYGVKIDV 559
EN+L++ V K+ DFGL++ + + T+ GTP Y+APE+L + Y K D+
Sbjct: 121 ENILLDSDNGKV---KLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDI 177
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLES 619
W+ GVILY L E K+LI ML+
Sbjct: 178 WSLGVILYEL-------------------------------------PELKDLIRKMLQK 200
Query: 620 NPDLRFSAEDVLDHP 634
+P+ R SA+++L+H
Sbjct: 201 DPEKRPSAKEILEHL 215
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 194 bits (495), Expect = 2e-57
Identities = 85/267 (31%), Positives = 138/267 (51%), Gaps = 15/267 (5%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM-IENEVNILRSVNHPN 436
++ G+++G G+F V DK A+K ++ S ++ +E E+ IL S+ HPN
Sbjct: 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60
Query: 437 IIKLLDEY--DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN 494
I++ + N L + +E + GG L + K K E + T+ + L+YLH N
Sbjct: 61 IVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSN 120
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV-----LRPMFTVCGTPTYVAPEILN 549
IVHRDIK N+LV+ G V+K+ DFG A+R+ +V GTP ++APE++
Sbjct: 121 GIVHRDIKGANILVDSDG----VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR 176
Query: 550 ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEA 609
YG D+W+ G + + G PP+ N L+ SG+ P + +SEEA
Sbjct: 177 GEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGE---PPEIPEHLSEEA 233
Query: 610 KELISHMLESNPDLRFSAEDVLDHPWL 636
K+ + L +P R +A+++L HP+L
Sbjct: 234 KDFLRKCLRRDPKKRPTADELLQHPFL 260
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 194 bits (495), Expect = 3e-57
Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 42/288 (14%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLG-KKQ---MIENEVNILRSVNH 434
+ G+IIG+G+F+ V +K + + A+KI+DK +L+ KK IE EV + R H
Sbjct: 3 FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEV-LTRLNGH 61
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN 494
P IIKL + LY V+E G+L I K E+ ++F + AL YLH
Sbjct: 62 PGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSK 121
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ-------------------RVLRPMF- 534
I+HRD+KPEN+L++ H+K+ DFG A+ +
Sbjct: 122 GIIHRDLKPENILLDKDM-HIKIT---DFGTAKVLDPNSSPESNKGDATNIDSQIEKNRR 177
Query: 535 ---TVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDIL 591
+ GT YV+PE+LNE G D+WA G I+Y +L G PPF + F IL
Sbjct: 178 RFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN--EYLTFQKIL 235
Query: 592 SGQYGFPSPYWDDISEEAKELISHMLESNPDLR----FSAEDVLDHPW 635
+Y FP + +AK+LI +L +P R +++ HP+
Sbjct: 236 KLEYSFP----PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPF 279
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 188 bits (481), Expect = 1e-55
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 11/260 (4%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII 438
+ + + IG G F V + K + A+K+I KK+ I NE+ IL+ HPNI+
Sbjct: 2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIV 60
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
K Y +EL++V+E GG L D + S N +E ++ + L L YLH N I+
Sbjct: 61 KYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGII 120
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV--LRPMFTVCGTPTYVAPEILNESGYGV 555
HRDIK N+L+ G +K+ DFGL+ ++ + T+ GTP ++APE++N Y
Sbjct: 121 HRDIKAANILLTSDG----EVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDY 176
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
K D+W+ G+ L G PP+ S+ LF +G G +P S+E K+ +
Sbjct: 177 KADIWSLGITAIELAEGKPPY-SELPPMKALFKIATNGPPGLRNPEK--WSDEFKDFLKK 233
Query: 616 MLESNPDLRFSAEDVLDHPW 635
L+ NP+ R +AE +L HP+
Sbjct: 234 CLQKNPEKRPTAEQLLKHPF 253
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 185 bits (471), Expect = 4e-54
Identities = 91/265 (34%), Positives = 139/265 (52%), Gaps = 15/265 (5%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPN 436
+ + ++IG G F V V + A+K ++K K + K + + NE IL+ +NHP
Sbjct: 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPF 61
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
++ L + +YLV++L+ GGDL +S+ VKFSEE KF + AL YLH I
Sbjct: 62 LVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGI 121
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGY 553
+HRDIKP+N+L++ G HV + DF +A + P + GTP Y+APE+L GY
Sbjct: 122 IHRDIKPDNILLDEQG-HV---HITDFNIA-TKVTPDTLTTSTSGTPGYMAPEVLCRQGY 176
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELI 613
V +D W+ GV Y L G P+ + + D I + Q Y S EA + I
Sbjct: 177 SVAVDWWSLGVTAYECLRGKRPYRGHSR---TIRDQIRAKQETADVLYPATWSTEAIDAI 233
Query: 614 SHMLESNPDLRFS--AEDVLDHPWL 636
+ +LE +P R +D+ +HP+
Sbjct: 234 NKLLERDPQKRLGDNLKDLKNHPYF 258
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 186 bits (475), Expect = 7e-54
Identities = 94/267 (35%), Positives = 153/267 (57%), Gaps = 17/267 (6%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVN 433
L + +G+ +G G+F VR K A+K + K ++L KQ+ + E +IL ++
Sbjct: 17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELS 76
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHD 493
HP I+ ++ + N +Y ++E + GG+LF + K +F + +KF L A YLH
Sbjct: 77 HPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHS 136
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGY 553
I++RD+KPENLL++ G HVKV DFG A++V FT+CGTP Y+APE++ G+
Sbjct: 137 KDIIYRDLKPENLLLDNKG-HVKVT---DFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGH 192
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELI 613
G +D W GV+LY + G+PPF DT + +++ IL+G+ FP+ W D A++L+
Sbjct: 193 GKAVDWWTMGVLLYEFIAGYPPFFDDTPFR--IYEKILAGRLKFPN--WFD--GRARDLV 246
Query: 614 SHMLESNPDLRFSA-----EDVLDHPW 635
+L+++ R DV +HP+
Sbjct: 247 KGLLQTDHTKRLGTLKGGVADVKNHPY 273
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 183 bits (466), Expect = 2e-53
Identities = 82/248 (33%), Positives = 137/248 (55%), Gaps = 24/248 (9%)
Query: 406 ALKIIDKSKLLGK--KQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLF 463
A+K+I K+ ++ K + E +IL P ++KL + LYLV+E + GGDL
Sbjct: 22 AIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLA 81
Query: 464 DAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDF 523
+ E+ ++ + AL YLH N I+HRD+KP+N+L++ +G H LK+ DF
Sbjct: 82 SLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNG-H---LKLTDF 137
Query: 524 GLA------QRVLRPMFT-----VCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCG 572
GL+ +++ + GTP Y+APE++ G+ +D W+ G ILY L G
Sbjct: 138 GLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVG 197
Query: 573 FPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRF---SAED 629
PPF +T +E+F +IL+G+ +P ++S+EA +LIS +L +P+ R S E+
Sbjct: 198 IPPFHGET--PEEIFQNILNGKIEWPE--DVEVSDEAIDLISKLLVPDPEKRLGAKSIEE 253
Query: 630 VLDHPWLE 637
+ +HP+ +
Sbjct: 254 IKNHPFFK 261
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 179 bits (455), Expect = 2e-51
Identities = 89/260 (34%), Positives = 145/260 (55%), Gaps = 17/260 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKLLD 442
+G G F V V D+ + ALK++ +++ KQ + NE +L+ V+HP II+L
Sbjct: 9 VGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFW 68
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
LY+++E + GG+LF + + +FS F + AL YLH IV+RD+K
Sbjct: 69 TEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLK 128
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKIDVWAA 562
PEN+L++ G H +K+ DFG A+++ +T+CGTP Y+APE++ G+ +D WA
Sbjct: 129 PENILLDKEG-H---IKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWAL 184
Query: 563 GVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPD 622
G+++Y +L G+PPF D +++ IL+G+ FP D+ AK+LI +L +
Sbjct: 185 GILIYEMLVGYPPFFDDN--PFGIYEKILAGKLEFPRHL--DLY--AKDLIKKLLVVDRT 238
Query: 623 LRF-----SAEDVLDHPWLE 637
R A+DV +H W +
Sbjct: 239 RRLGNMKNGADDVKNHRWFK 258
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 169 bits (431), Expect = 2e-48
Identities = 86/265 (32%), Positives = 145/265 (54%), Gaps = 17/265 (6%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHP 435
Y +G +IG G F VV + + A+K I K+ ++ + I E+++L+++ HP
Sbjct: 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHP 59
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSE-EDSKFMTQSLASALSYLHDN 494
NI+K + +T++ LY+++E + G L I K F E + ++ Q L L+YLH+
Sbjct: 60 NIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVL-QGLAYLHEQ 118
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNES 551
++HRDIK N+L G V+K+ DFG+A ++ + +V GTP ++APE++ S
Sbjct: 119 GVIHRDIKAANILTTKDG----VVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMS 174
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
G D+W+ G + LL G PP+ D N LF I+ + P P + IS E K+
Sbjct: 175 GASTASDIWSLGCTVIELLTGNPPY-YDLNPMAALF-RIVQDDH-PPLP--EGISPELKD 229
Query: 612 LISHMLESNPDLRFSAEDVLDHPWL 636
+ + +P+LR +A+ +L HPW+
Sbjct: 230 FLMQCFQKDPNLRPTAKQLLKHPWI 254
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 168 bits (429), Expect = 6e-48
Identities = 103/274 (37%), Positives = 146/274 (53%), Gaps = 30/274 (10%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPNI 437
Y V + IG G+F VR+V K K ID + K KQ + +EVNILR + HPNI
Sbjct: 2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI 61
Query: 438 IKLLD-EYDTNNE-LYLVIELIKGGDLFDAISK---NVKFSEEDS--KFMTQSLASALSY 490
++ D D +N+ LY+V+E +GGDL I K K+ EE+ + +TQ L AL
Sbjct: 62 VRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQ-LLLALYE 120
Query: 491 LH-----DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR--PMF--TVCGTPT 541
H N ++HRD+KP N+ ++ + +K+GDFGLA ++L F T GTP
Sbjct: 121 CHNRSDPGNTVLHRDLKPANIFLDANNN----VKLGDFGLA-KILGHDSSFAKTYVGTPY 175
Query: 542 YVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYG-FPSP 600
Y++PE LN Y K D+W+ G ++Y L PPF + N Q +L I G++ P
Sbjct: 176 YMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPF-TARN-QLQLASKIKEGKFRRIPYR 233
Query: 601 YWDDISEEAKELISHMLESNPDLRFSAEDVLDHP 634
Y S E E+I ML +PD R S E++L P
Sbjct: 234 Y----SSELNEVIKSMLNVDPDKRPSTEELLQLP 263
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 170 bits (433), Expect = 1e-47
Identities = 95/293 (32%), Positives = 148/293 (50%), Gaps = 42/293 (14%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHP 435
+ V ++IG G F V V DK A+K++ KS ++ + Q+ + E +IL + P
Sbjct: 2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSP 61
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY 495
I+KL + LYLV+E + GGDL + + + F EE ++F L AL +H
Sbjct: 62 WIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLG 121
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQR--------------------------- 528
+HRDIKP+N+L++ G H+K+ DFGL ++
Sbjct: 122 FIHRDIKPDNILIDADG-HIKLA---DFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRR 177
Query: 529 ----VLRPMF-TVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQ 583
R + GTP Y+APE+L + YG++ D W+ GVILY +L GFPPF SDT
Sbjct: 178 RDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTL-- 235
Query: 584 DELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRF-SAEDVLDHPW 635
E ++ I++ + P +S EA +LI +L +P+ R S E++ HP+
Sbjct: 236 QETYNKIINWKESLRFPPDPPVSPEAIDLICRLL-CDPEDRLGSFEEIKSHPF 287
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 170 bits (431), Expect = 3e-47
Identities = 96/284 (33%), Positives = 139/284 (48%), Gaps = 31/284 (10%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHP- 435
Y + + +G+G+F V D+ ALK++ K K++ E+ IL S+NHP
Sbjct: 2 YRILRKLGEGSFGEVYLARDRKL---VALKVLAKKLESKSKEVERFLREIQILASLNHPP 58
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN---VKFSEEDSKFMTQSLASALSYLH 492
NI+KL D + LYLV+E + GG L D + K SE ++ F+ + SAL YLH
Sbjct: 59 NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH 118
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA---------QRVLRPMFTVCGTPTYV 543
I+HRDIKPEN+L++ G VK++ DFGLA + T GTP Y+
Sbjct: 119 SKGIIHRDIKPENILLDRDGRVVKLI---DFGLAKLLPDPGSTSSIPALPSTSVGTPGYM 175
Query: 544 APEIL---NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQ--DELFDDILSGQYG-F 597
APE+L + + D+W+ G+ LY LL G PPF + N + IL
Sbjct: 176 APEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSL 235
Query: 598 PSPYWDD----ISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
SP IS+ A +L+ +L +P R S+ L H L
Sbjct: 236 ASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLA 279
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 166 bits (422), Expect = 8e-47
Identities = 94/301 (31%), Positives = 134/301 (44%), Gaps = 62/301 (20%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---------EVNIL 429
Y + +G+G + VV + DK ALK I + E E+++L
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKI--------RLDNEEEGIPSTALREISLL 52
Query: 430 RSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN-VKFSEEDSKFMTQSLASAL 488
+ + HPNI+KLLD T +LYLV E DL + K S K + L L
Sbjct: 53 KELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGL 111
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV----LRPMFTVCGTPTYVA 544
+Y H + I+HRD+KP+N+L+ G VLK+ DFGLA R LR T Y A
Sbjct: 112 AYCHSHRILHRDLKPQNILINRDG----VLKLADFGLA-RAFGIPLRTYTHEVVTLWYRA 166
Query: 545 PEIL-NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFD--DILSGQYGFPS-- 599
PEIL Y +D+W+ G I ++ G P F D+ + D+LF IL G P+
Sbjct: 167 PEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS-EIDQLFKIFQIL----GTPTEE 221
Query: 600 --------PYWDD----------------ISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
P + + E +L+S ML+ NP R SA++ L HP+
Sbjct: 222 SWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPY 281
Query: 636 L 636
Sbjct: 282 F 282
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 163 bits (413), Expect = 4e-45
Identities = 88/263 (33%), Positives = 149/263 (56%), Gaps = 20/263 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN--EVNILRSVNHPNIIKL 440
+++G G F V V +K A+KI+ K ++ K ++ E +L++ HP + L
Sbjct: 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTAL 60
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ T++ L V+E GG+LF +S+ FSE+ ++F + SAL YLH +V+RD
Sbjct: 61 KYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRD 120
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGYGVKI 557
+K ENL+++ G H+ K+ DFGL + + M T CGTP Y+APE+L ++ YG +
Sbjct: 121 LKLENLMLDKDG-HI---KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAV 176
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
D W GV++Y ++CG PF + D ++LF+ IL + FP +S EAK L++ +L
Sbjct: 177 DWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIRFPR----TLSPEAKSLLAGLL 230
Query: 618 ESNPDLRF-----SAEDVLDHPW 635
+ +P R A+++++H +
Sbjct: 231 KKDPKQRLGGGPEDAKEIMEHRF 253
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 160 bits (406), Expect = 1e-44
Identities = 83/270 (30%), Positives = 126/270 (46%), Gaps = 22/270 (8%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDC--ALKIIDKSKLLGKKQMIENEVNILRSVN 433
L+R V +G G+ VV +V +HK ALK I ++ + E+ LRS
Sbjct: 3 LERVKV---LGQGSSGVVYKV--RHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCE 57
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH- 492
P ++K + E+ +V+E + GG L D + K K E ++ + + L YLH
Sbjct: 58 SPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHT 117
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ---RVLRPMFTVCGTPTYVAPEILN 549
+I+HRDIKP NLL+ G +K+ DFG+++ L T GT TY++PE +
Sbjct: 118 KRHIIHRDIKPSNLLINSKGE----VKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQ 173
Query: 550 ESGYGVKIDVWAAGVILYILLCG-FPPFVSDTNDQDELFDDILSGQYGFPSPYWDD--IS 606
Y D+W+ G+ L G FP EL I G P P S
Sbjct: 174 GESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDG----PPPSLPAEEFS 229
Query: 607 EEAKELISHMLESNPDLRFSAEDVLDHPWL 636
E ++ IS L+ +P R SA ++L HP++
Sbjct: 230 PEFRDFISACLQKDPKKRPSAAELLQHPFI 259
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 160 bits (406), Expect = 2e-44
Identities = 85/275 (30%), Positives = 148/275 (53%), Gaps = 22/275 (8%)
Query: 372 PSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNIL 429
P +L Y + IG+G V + D+ + A+K + L K+ I NE+ I+
Sbjct: 17 PREL---YKNLEKIGEGASGEVYKATDRATGKEVAIKKMR----LRKQNKELIINEILIM 69
Query: 430 RSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN-VKFSEEDSKFMTQSLASAL 488
+ HPNI+ D Y +EL++V+E + GG L D I++N V+ +E ++ + + L
Sbjct: 70 KDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGL 129
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAP 545
YLH ++HRDIK +N+L+ G +K+ DFG A ++ + +V GTP ++AP
Sbjct: 130 EYLHSQNVIHRDIKSDNILLSKDG----SVKLADFGFAAQLTKEKSKRNSVVGTPYWMAP 185
Query: 546 EILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP-YWDD 604
E++ YG K+D+W+ G++ + G PP++ + + LF L G P +
Sbjct: 186 EVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR-ALF---LITTKGIPPLKNPEK 241
Query: 605 ISEEAKELISHMLESNPDLRFSAEDVLDHPWLERS 639
S E K+ ++ L +P+ R SAE++L HP+L+++
Sbjct: 242 WSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKA 276
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 159 bits (403), Expect = 9e-44
Identities = 92/265 (34%), Positives = 152/265 (57%), Gaps = 22/265 (8%)
Query: 383 QIIGDGNFA---VVRQVYDKHKDMDCALKIIDKSKLLGKKQM-IENEVNILRSVNHPNII 438
+++G G+F +VR++ A+K++ K+ L + ++ + E +IL VNHP I+
Sbjct: 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIV 61
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
KL + T +LYL+++ ++GGDLF +SK V F+EED KF LA AL +LH I++
Sbjct: 62 KLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIY 121
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGYGV 555
RD+KPEN+L++ G H+K+ DFGL++ + + ++ CGT Y+APE++N G+
Sbjct: 122 RDLKPENILLDEEG-HIKLT---DFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQ 177
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
D W+ GV+++ +L G PF D+ E IL + G P +S EA+ L+
Sbjct: 178 SADWWSFGVLMFEMLTGSLPF--QGKDRKETMTMILKAKLGMP----QFLSPEAQSLLRA 231
Query: 616 MLESNPDLRFSA-----EDVLDHPW 635
+ + NP R A E++ HP+
Sbjct: 232 LFKRNPANRLGAGPDGVEEIKRHPF 256
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 157 bits (398), Expect = 1e-43
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 406 ALKIIDKSKLLGKKQMIE---NEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDL 462
A+K++ KS ++ K Q+ ++ P + KL + + + LYLV+E + GGD
Sbjct: 25 AIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDC 84
Query: 463 FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGD 522
I E+ +K + + LH I+HRDIKPENLL++ +G H LK+ D
Sbjct: 85 ASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTG-H---LKLTD 140
Query: 523 FGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTND 582
FGL++ L V GTP Y+APE + G D W+ G +++ L G+PPF ++T
Sbjct: 141 FGLSRNGLENKKFV-GTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET-- 197
Query: 583 QDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSA---EDVLDHPW 635
D +FD+ILS + +P + S EA +LI+ +L +P R A +++ HP+
Sbjct: 198 PDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPF 253
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 158 bits (402), Expect = 2e-43
Identities = 86/263 (32%), Positives = 143/263 (54%), Gaps = 18/263 (6%)
Query: 385 IGDGNFAVVRQVY-DKHKDMD--CALKIIDKSKL--LGKKQMIENEVNILRSVNHPNIIK 439
+G G + QV+ K KD ALK + KS L L + + + E +IL + ++K
Sbjct: 9 VGQGGYG---QVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVK 65
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
LL + + LYL +E + GGD ++ SE+ ++F + A+ LH+ +HR
Sbjct: 66 LLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHR 125
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKIDV 559
D+KPEN L++ SG H+K+ DFGL++ ++ +V G+P Y+APE+L GY +D
Sbjct: 126 DLKPENFLIDASG-HIKLT---DFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDY 181
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD----ISEEAKELISH 615
W+ G +LY LCGFPPF T +E ++++ + P +DD +S+EA +LI+
Sbjct: 182 WSLGCMLYEFLCGFPPFSGST--PNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITK 239
Query: 616 MLESNPDLRFSAEDVLDHPWLER 638
++ S ED+ +HP+ +
Sbjct: 240 LINDPSRRFGSLEDIKNHPFFKE 262
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 154 bits (391), Expect = 5e-42
Identities = 86/262 (32%), Positives = 139/262 (53%), Gaps = 21/262 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSV-NHPNIIKL 440
++G G+F V K D A+K++ K +L + E +L HP + +L
Sbjct: 2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQL 61
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ T + L+ V+E + GGDL I ++ +F E ++F + L +LH+ I++RD
Sbjct: 62 HSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRD 121
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGVKI 557
+K +N+L++ G H+ K+ DFG+ + + T CGTP Y+APEIL+ YG +
Sbjct: 122 LKLDNVLLDSEG-HI---KIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAV 177
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
D WA GV+LY +L G PF + +D+DELF IL + +P W +S+EAK ++ L
Sbjct: 178 DWWALGVLLYEMLAGQSPF--EGDDEDELFQSILEDEVRYPR--W--LSKEAKSILKSFL 231
Query: 618 ESNPDLRFSA-----EDVLDHP 634
NP+ R +D+ HP
Sbjct: 232 TKNPEKRLGCLPTGEQDIKGHP 253
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 154 bits (390), Expect = 5e-42
Identities = 90/261 (34%), Positives = 147/261 (56%), Gaps = 20/261 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN--EVNILRSVNHPNIIKL 440
+++G G F V V +K A+KI+ K ++ K ++ E +L++ HP + L
Sbjct: 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTAL 60
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ T++ L V+E GG+LF +S+ F+EE ++F + SAL YLH +V+RD
Sbjct: 61 KYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRD 120
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPTYVAPEILNESGYGVKI 557
IK ENL+++ G H+K+ DFGL + + M T CGTP Y+APE+L ++ YG +
Sbjct: 121 IKLENLMLDKDG-HIKIT---DFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAV 176
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
D W GV++Y ++CG PF + D + LF+ IL + FP +S EAK L++ +L
Sbjct: 177 DWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIRFPR----TLSPEAKSLLAGLL 230
Query: 618 ESNPDLRF-----SAEDVLDH 633
+ +P R A++V++H
Sbjct: 231 KKDPKQRLGGGPSDAKEVMEH 251
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 154 bits (390), Expect = 6e-42
Identities = 90/266 (33%), Positives = 143/266 (53%), Gaps = 22/266 (8%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
++IG G+F V K A+K++ K +L KK+ M E V +L++V HP ++
Sbjct: 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNV-LLKNVKHPFLV 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T ++LY V++ + GG+LF + + F E ++F +ASAL YLH I++
Sbjct: 60 GLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGV 555
RD+KPEN+L++ G HV VL DFGL + + T CGTP Y+APE+L + Y
Sbjct: 120 RDLKPENILLDSQG-HV-VLT--DFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDR 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W G +LY +L G PPF S D E++D+IL+ +IS A+ L+
Sbjct: 176 TVDWWCLGAVLYEMLYGLPPFYS--RDTAEMYDNILNKPLRLKP----NISVSARHLLEG 229
Query: 616 MLESNPDLRFSA----EDVLDHPWLE 637
+L+ + R A ++ +H +
Sbjct: 230 LLQKDRTKRLGAKDDFLEIKNHVFFS 255
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 152 bits (387), Expect = 7e-42
Identities = 94/284 (33%), Positives = 131/284 (46%), Gaps = 39/284 (13%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKL-LGKKQMIENEVNILRSVNHPNIIKLLDE 443
IG+G + VV + DK A+K I G + E+ +L+ +NHPNIIKLLD
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+ +LYLV E + DL+ I + E K L L++ H + I+HRD+K
Sbjct: 67 FRHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLK 125
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVL----RPMFTVCGTPTYVAPEIL-NESGYGVKI 557
PENLL+ G VLK+ DFGLA R RP T Y APE+L + GY +
Sbjct: 126 PENLLINTEG----VLKLADFGLA-RSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPV 180
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDI----------------LSGQYGFPSPY 601
D+W+ G I LL P F ++ D+LF L+ Y F P
Sbjct: 181 DIWSVGCIFAELLSRRPLFPGK-SEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPK 239
Query: 602 WD---------DISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
+ S +A +L+S ML +P R +AE L HP+
Sbjct: 240 KAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF 283
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 151 bits (385), Expect = 1e-41
Identities = 96/301 (31%), Positives = 138/301 (45%), Gaps = 61/301 (20%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE-----NEVNILRSVN 433
Y V + +GDG F V +K A+K K+ K E EV LR +N
Sbjct: 1 YKVIKQLGDGTFGSVYLARNKETGELVAIK-----KMKKKFYSWEECMNLREVKSLRKLN 55
Query: 434 -HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAIS--KNVKFSEEDSKFMTQSLASALSY 490
HPNI+KL + + N+ELY V E ++G +L+ + K FSE + + + L++
Sbjct: 56 EHPNIVKLKEVFRENDELYFVFEYMEG-NLYQLMKDRKGKPFSESVIRSIIYQILQGLAH 114
Query: 491 LHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL-RPMFTV-CGTPTYVAPEIL 548
+H + HRD+KPENLLV V+K+ DFGLA+ + RP +T T Y APEIL
Sbjct: 115 IHKHGFFHRDLKPENLLVSGPE----VVKIADFGLAREIRSRPPYTDYVSTRWYRAPEIL 170
Query: 549 NESG-YGVKIDVWAAGVI---LYILLCGFPPFVSDTNDQDELFD--DILSGQYGFPSP-Y 601
S Y +D+WA G I LY L FP +++ D+L+ +L G P+
Sbjct: 171 LRSTSYSSPVDIWALGCIMAELYTLRPLFP----GSSEIDQLYKICSVL----GTPTKQD 222
Query: 602 WDD--------------------------ISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
W + S EA +LI ML +P R +A L HP+
Sbjct: 223 WPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPY 282
Query: 636 L 636
Sbjct: 283 F 283
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 152 bits (385), Expect = 2e-41
Identities = 87/262 (33%), Positives = 140/262 (53%), Gaps = 18/262 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN--EVNILRSVNHPNIIKLLD 442
IG G+F V QV + ALK I K+ ++ + ++ E +L VN P I+ L
Sbjct: 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+ + +LYLV+ I GG+LF + + +F ++F T L AL LH +++RD+K
Sbjct: 61 SFQSPEKLYLVLAFINGGELFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLK 120
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPTYVAPEILNESGYGVKIDV 559
PEN+L++ G H+ + DFGL + ++ T CGTP Y+APE+L GY +D
Sbjct: 121 PENILLDYQG-HIALC---DFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDW 176
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLES 619
W GV+LY +L G PPF + + +E++ IL FP D +AK+L+ +L
Sbjct: 177 WTLGVLLYEMLTGLPPFYDE--NVNEMYRKILQEPLRFP----DGFDRDAKDLLIGLLSR 230
Query: 620 NPDLRF---SAEDVLDHPWLER 638
+P R A+++ +HP+ +
Sbjct: 231 DPTRRLGYNGAQEIKNHPFFSQ 252
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 151 bits (384), Expect = 4e-41
Identities = 89/269 (33%), Positives = 148/269 (55%), Gaps = 26/269 (9%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
+++G G+F V K A+K++ K +L M E + L + NHP +
Sbjct: 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSL-ARNHPFLT 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
+L + T + L+ V+E + GGDL I K+ +F E ++F + SAL +LHD I++
Sbjct: 60 QLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIY 119
Query: 499 RDIKPENLLVEMSG-CHVKVLKVGDFGLAQRVLR---PMFTVCGTPTYVAPEILNESGYG 554
RD+K +N+L++ G C K+ DFG+ + + T CGTP Y+APEIL E YG
Sbjct: 120 RDLKLDNVLLDHEGHC-----KLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYG 174
Query: 555 VKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
+D WA GV+LY +LCG PF ++ +D+LF+ IL+ + +P+ W +S++A +++
Sbjct: 175 PSVDWWAMGVLLYEMLCGHAPFEAEN--EDDLFEAILNDEVVYPT--W--LSQDAVDILK 228
Query: 615 HMLESNPDLRFSA------EDVLDHPWLE 637
+ NP +R + E +L HP+ +
Sbjct: 229 AFMTKNPTMRLGSLTLGGEEAILRHPFFK 257
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 148 bits (376), Expect = 2e-40
Identities = 85/271 (31%), Positives = 138/271 (50%), Gaps = 25/271 (9%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE--NEVNILRSVN 433
L + + + IG G F+VV + ALK + +++ K + E+++L+ ++
Sbjct: 1 LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ--------SLA 485
HPN+IK L + NNEL +V+EL GDL S+ +K ++ + + + L
Sbjct: 61 HPNVIKYLASFIENNELNIVLELADAGDL----SRMIKHFKKQKRLIPERTIWKYFVQLC 116
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP----MFTVCGTPT 541
SAL ++H I+HRDIKP N+ + +G V+K+GD GL R ++ GTP
Sbjct: 117 SALEHMHSKRIMHRDIKPANVFITATG----VVKLGDLGLG-RFFSSKTTAAHSLVGTPY 171
Query: 542 YVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPY 601
Y++PE ++E+GY K D+W+ G +LY + PF D + L I Y P P
Sbjct: 172 YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYP-PLPA 230
Query: 602 WDDISEEAKELISHMLESNPDLRFSAEDVLD 632
D SEE ++L+S + +P+ R VL
Sbjct: 231 -DHYSEELRDLVSRCINPDPEKRPDISYVLQ 260
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 149 bits (377), Expect = 3e-40
Identities = 89/264 (33%), Positives = 147/264 (55%), Gaps = 20/264 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN--EVNILRSVNHPNIIKL 440
+++G G F V V +K A+KI+ K ++ K ++ E +L++ HP + L
Sbjct: 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSL 60
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ T + L V+E + GG+LF +S+ FSE+ ++F + SAL YLH IV+RD
Sbjct: 61 KYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRD 120
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPTYVAPEILNESGYGVKI 557
+K ENL+++ G H+K+ DFGL + + M T CGTP Y+APE+L ++ YG +
Sbjct: 121 LKLENLMLDKDG-HIKIT---DFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAV 176
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
D W GV++Y ++CG PF + D ++LF+ IL FP +S +AK L+S +L
Sbjct: 177 DWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEDIKFPR----TLSADAKSLLSGLL 230
Query: 618 ESNPDLRF-----SAEDVLDHPWL 636
+P+ R A++++ H +
Sbjct: 231 IKDPNKRLGGGPDDAKEIMRHSFF 254
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 148 bits (375), Expect = 9e-40
Identities = 90/265 (33%), Positives = 150/265 (56%), Gaps = 22/265 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN--EVNILRSV---NHPNIIK 439
IG G F V QV K A+K++ K +++ KK++ E NIL P I+
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T+++LYLV + + GG+LF + K +FSE+ +KF L AL +LH IV+R
Sbjct: 61 LKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYR 120
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEI-LNESGYGV 555
D+KPEN+L++ +G H+ + DFGL++ L + T CGT Y+APE+ L+E GY
Sbjct: 121 DLKPENILLDATG-HIALC---DFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTK 176
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W+ GV+++ + CG+ PF ++ D +++ +I G+ FP + +S+E ++ +
Sbjct: 177 HVDFWSLGVLVFEMCCGWSPFYAE--DTQQMYRNIAFGKVRFPK---NVLSDEGRQFVKG 231
Query: 616 MLESNPDLRFSA----EDVLDHPWL 636
+L NP R A ++ +HP+
Sbjct: 232 LLNRNPQHRLGAHRDAVELKEHPFF 256
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 148 bits (374), Expect = 1e-39
Identities = 89/261 (34%), Positives = 146/261 (55%), Gaps = 21/261 (8%)
Query: 386 GDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ---MIENEVNILRSVNHPNIIKLLD 442
G G VR+V A+K++ K+ ++ ++ + E NIL +V HP I+ L+
Sbjct: 8 GYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIY 67
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+ T +LYL++E + GG+LF + + F E+ + F ++ AL +LH I++RD+K
Sbjct: 68 AFQTGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLK 127
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGVKIDV 559
PEN+L++ G HVK+ DFGL + + T CGT Y+APEIL SG+G +D
Sbjct: 128 PENILLDAQG-HVKLT---DFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDW 183
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLES 619
W+ G ++Y +L G PPF ++ ++ + D IL G+ P PY ++ EA++L+ +L+
Sbjct: 184 WSLGALMYDMLTGAPPFTAE--NRKKTIDKILKGKLNLP-PY---LTPEARDLLKKLLKR 237
Query: 620 NPDLRF-----SAEDVLDHPW 635
NP R A +V HP+
Sbjct: 238 NPSSRLGAGPGDAAEVQSHPF 258
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 147 bits (372), Expect = 2e-39
Identities = 89/262 (33%), Positives = 149/262 (56%), Gaps = 21/262 (8%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN--EVNILRSVNHPNIIKL 440
+++G G F V V +K A+KI+ K ++ K ++ E +L++ HP + L
Sbjct: 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTAL 60
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH-DNYIVHR 499
+ T++ L V+E GG+LF +S+ FSE+ ++F + SAL YLH + +V+R
Sbjct: 61 KYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYR 120
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPTYVAPEILNESGYGVK 556
D+K ENL+++ G H+K+ DFGL + ++ M T CGTP Y+APE+L ++ YG
Sbjct: 121 DLKLENLMLDKDG-HIKIT---DFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRA 176
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+D W GV++Y ++CG PF + D ++LF+ IL + FP +S EAK L+S +
Sbjct: 177 VDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIRFPR----TLSPEAKSLLSGL 230
Query: 617 LESNPDLRF-----SAEDVLDH 633
L+ +P R A++++ H
Sbjct: 231 LKKDPKQRLGGGPDDAKEIMQH 252
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 147 bits (373), Expect = 2e-39
Identities = 86/265 (32%), Positives = 137/265 (51%), Gaps = 24/265 (9%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVN---HPNII 438
++G G+F V K A+K + K ++ + ++ + E I + N HP ++
Sbjct: 6 VLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLV 65
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T + + V+E GGDL I +V FSE + F + L YLH+N IV+
Sbjct: 66 NLFACFQTEDHVCFVMEYAAGGDLMMHIHTDV-FSEPRAVFYAACVVLGLQYLHENKIVY 124
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGV 555
RD+K +NLL++ G VK+ DFGL + + T CGTP ++APE+L E+ Y
Sbjct: 125 RDLKLDNLLLDTEG-FVKI---ADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTR 180
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W GV++Y +L G PF D D++E+FD I++ + +P +S EA ++
Sbjct: 181 AVDWWGLGVLIYEMLVGESPFPGD--DEEEVFDSIVNDEVRYPR----FLSREAISIMRR 234
Query: 616 MLESNPDLRF-----SAEDVLDHPW 635
+L NP+ R AEDV P+
Sbjct: 235 LLRRNPERRLGSGEKDAEDVKKQPF 259
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 144 bits (364), Expect = 4e-39
Identities = 81/267 (30%), Positives = 141/267 (52%), Gaps = 17/267 (6%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALK--IIDKSKLLGKK--QMIENEVNILRSVN 433
R+ G+++G G+F V + + A+K + G++ + +E E+ +L +
Sbjct: 1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQ 60
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHD 493
HPNI++ L + LY+ +EL+ GG L + K F E + T+ + L YLHD
Sbjct: 61 HPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHD 120
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV--LRPMFTVCGTPTYVAPEILNES 551
VHRDIK N+LV+ +G +K+ DFG+A++V + G+P ++APE++ +
Sbjct: 121 RNTVHRDIKGANILVDTNGV----VKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQ 176
Query: 552 G-YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILS-GQYGFPSPYWDDISEEA 609
G YG+ D+W+ G + + G PP+ Q E + G+ P D +S+EA
Sbjct: 177 GGYGLAADIWSLGCTVLEMATGKPPW-----SQLEGVAAVFKIGRSKELPPIPDHLSDEA 231
Query: 610 KELISHMLESNPDLRFSAEDVLDHPWL 636
K+ I L+ +P LR +A ++L+HP++
Sbjct: 232 KDFILKCLQRDPSLRPTAAELLEHPFV 258
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 145 bits (368), Expect = 5e-39
Identities = 94/289 (32%), Positives = 136/289 (47%), Gaps = 36/289 (12%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE----NEVNILRSVN 433
RY G+ +G+G +AVV + DK A+K I + K I E+ +L+ +
Sbjct: 1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELK 60
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFMTQSLASALSYLH 492
HPNII LLD + + + LV E + DL I K++ + D K L YLH
Sbjct: 61 HPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLH 119
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV---LRPMFTVCGTPTYVAPEIL- 548
N+I+HRD+KP NLL+ G VLK+ DFGLA+ R M T Y APE+L
Sbjct: 120 SNWILHRDLKPNNLLIASDG----VLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLF 175
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPFVSDTN-DQ------------DELFDDILSGQY 595
YGV +D+W+ G I LL P D++ DQ +E + + S
Sbjct: 176 GARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPD 235
Query: 596 G-----FPSPYWDDI----SEEAKELISHMLESNPDLRFSAEDVLDHPW 635
FP I S++A +L+ +L NP+ R +A L+HP+
Sbjct: 236 YVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPY 284
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 146 bits (369), Expect = 5e-39
Identities = 88/253 (34%), Positives = 144/253 (56%), Gaps = 16/253 (6%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ--MIENEVNIL-RSVNHPNIIK 439
++IG G+F V K ++ A+K++ K +L KK+ I +E N+L ++V HP ++
Sbjct: 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVG 60
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T ++LY V++ I GG+LF + + F E ++F +ASAL YLH IV+R
Sbjct: 61 LHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYR 120
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGVK 556
D+KPEN+L++ G H+ + DFGL + + T CGTP Y+APE+L++ Y
Sbjct: 121 DLKPENILLDSQG-HIVLT---DFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRT 176
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+D W G +LY +L G PPF S + E++D+IL+ P +I+ A+ L+ +
Sbjct: 177 VDWWCLGAVLYEMLYGLPPFYS--RNTAEMYDNILNK----PLQLKPNITNSARHLLEGL 230
Query: 617 LESNPDLRFSAED 629
L+ + R A+D
Sbjct: 231 LQKDRTKRLGAKD 243
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 147 bits (372), Expect = 5e-39
Identities = 92/302 (30%), Positives = 148/302 (49%), Gaps = 55/302 (18%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKLL 441
+IG G F VR V K A+K + KS++L K+Q+ + E +IL ++P ++KL
Sbjct: 8 VIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLY 67
Query: 442 DEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHD-NYIVHRD 500
+ N LYL++E + GGD+ + K F+EE+++F A+ +H YI HRD
Sbjct: 68 YSFQDENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYI-HRD 126
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQ-----------RVL-------------RPM--- 533
IKP+NLL++ G H+ K+ DFGL R+L +PM
Sbjct: 127 IKPDNLLLDAKG-HI---KLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSK 182
Query: 534 --------------FTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSD 579
++ GTP Y+APE+ ++GY + D W+ GVI+Y +L G+PPF SD
Sbjct: 183 RKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSD 242
Query: 580 TNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRF---SAEDVLDHPWL 636
+ E + I++ + P +S EAK+LI + + R ++ HP+
Sbjct: 243 --NPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLC-CEAERRLGNNGVNEIKSHPFF 299
Query: 637 ER 638
+
Sbjct: 300 KG 301
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 144 bits (366), Expect = 6e-39
Identities = 88/297 (29%), Positives = 133/297 (44%), Gaps = 50/297 (16%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN----EVNILRSVN 433
RY + IG+G +V + D+ ALK + +L G I N E+ L++
Sbjct: 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGG---IPNQALREIKALQACQ 57
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQSLASALSYLH 492
HP ++KLLD + + LV+E + DL + + + E K + L ++Y+H
Sbjct: 58 HPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH 116
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL-----RPMFTVCGTPTYVAPEI 547
N I+HRD+KP NLL+ G LK+ DFGLA R+ R T Y APE+
Sbjct: 117 ANGIMHRDLKPANLLISADGV----LKIADFGLA-RLFSEEEPRLYSHQVATRWYRAPEL 171
Query: 548 LNES-GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPY----- 601
L + Y +D+WA G I LL G P F + ND ++L I+ G P+
Sbjct: 172 LYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE-NDIEQL--AIVFRTLGTPNEETWPGL 228
Query: 602 ------------------WDDI----SEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
++I S EA +L+ +L +P R SA + L HP+
Sbjct: 229 TSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYF 285
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 145 bits (368), Expect = 8e-39
Identities = 89/260 (34%), Positives = 142/260 (54%), Gaps = 14/260 (5%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMD---CALKIIDKSKLLGKKQM--IENEVNILRSVNHPNI 437
+ +G G+F R + +K+ D A+K +KSK++ +KQ+ + +E IL +NHP
Sbjct: 36 RTLGTGSFG--RVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFC 93
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
+ L + + LYLV+E + GG+ F + +N +F + F + YL IV
Sbjct: 94 VNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIV 153
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKI 557
+RD+KPENLL++ G +K+ DFG A+ V +T+CGTP Y+APEIL G+G
Sbjct: 154 YRDLKPENLLLDKDG----FIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAA 209
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
D W G+ +Y +L G PPF + N+ ++ IL G FP ++ K+L+SH L
Sbjct: 210 DWWTLGIFIYEILVGCPPFYA--NEPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDL 267
Query: 618 ESN-PDLRFSAEDVLDHPWL 636
+L+ A++V +HPW
Sbjct: 268 TKRYGNLKKGAQNVKEHPWF 287
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 143 bits (362), Expect = 9e-39
Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 21/266 (7%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPN 436
+ V + +G G++ V +V + ALK +D + K ++ NE+ IL SVNHPN
Sbjct: 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK----FSEEDS-KFMTQSLASALSYL 491
II + + N+L +V+E GDL AISK K E++ + Q L L L
Sbjct: 61 IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQ-LLRGLQAL 119
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF--TVCGTPTYVAPEILN 549
H+ I+HRD+K N+L+ ++K+GD G++ +VL+ T GTP Y+APE+
Sbjct: 120 HEQKILHRDLKSANILL----VANDLVKIGDLGIS-KVLKKNMAKTQIGTPHYMAPEVWK 174
Query: 550 ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQY-GFPSPYWDDISEE 608
Y K D+W+ G +LY + PPF + +L + G+Y P Y D+
Sbjct: 175 GRPYSYKSDIWSLGCLLYEMATFAPPF--EARSMQDLRYKVQRGKYPPIPPIYSQDLQ-- 230
Query: 609 AKELISHMLESNPDLRFSAEDVLDHP 634
I ML+ P LR + + +L P
Sbjct: 231 --NFIRSMLQVKPKLRPNCDKILASP 254
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 144 bits (366), Expect = 1e-38
Identities = 85/270 (31%), Positives = 141/270 (52%), Gaps = 25/270 (9%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
+++G G+F V K D A+K++ K +L M E + L + HP +
Sbjct: 1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILAL-AAKHPFLT 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T + L+ V+E + GGDL I ++ KF E S+F + AL +LH + +++
Sbjct: 60 ALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGV 555
RD+K +N+L++ G H K+ DFG+ + + T CGTP Y+APEIL E YG
Sbjct: 120 RDLKLDNILLDAEG-HCKL---ADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGP 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D WA GV++Y ++ G PPF +D ++D+LF+ IL + P W +S+EA ++
Sbjct: 176 SVDWWALGVLMYEMMAGQPPFEAD--NEDDLFESILHDDVLY--PVW--LSKEAVSILKA 229
Query: 616 MLESNPDLRFSA-------EDVLDHPWLER 638
+ NP+ R + + HP+ +
Sbjct: 230 FMTKNPNKRLGCVASQGGEDAIKQHPFFKE 259
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 145 bits (368), Expect = 1e-38
Identities = 94/307 (30%), Positives = 135/307 (43%), Gaps = 61/307 (19%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKII---DKSKLLGKKQMIENEVNILRSVNH 434
RY + + IG G + VV DK A+K I + K+ I E+ +LR + H
Sbjct: 1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKR--ILREIKLLRHLRH 58
Query: 435 PNIIKLLD-----EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALS 489
NII LLD + N++Y+V EL DL I +++ ++ + L
Sbjct: 59 ENIIGLLDILRPPSPEDFNDVYIVTEL-METDLHKVIKSPQPLTDDHIQYFLYQILRGLK 117
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT-YV----- 543
YLH ++HRD+KP N+LV S C LK+ DFGLA R + P G T YV
Sbjct: 118 YLHSANVIHRDLKPSNILVN-SNCD---LKICDFGLA-RGVDPDEDEKGFLTEYVVTRWY 172
Query: 544 -APEI-LNESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQDELFDDILSGQYGFPSP 600
APE+ L+ S Y ID+W+ G I LL P F D DQ L ++L +P
Sbjct: 173 RAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVL------GTP 226
Query: 601 YWDDI------------------------------SEEAKELISHMLESNPDLRFSAEDV 630
+D+ S EA +L+ ML +P R +A++
Sbjct: 227 SEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEA 286
Query: 631 LDHPWLE 637
L HP+L
Sbjct: 287 LAHPYLA 293
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 144 bits (365), Expect = 1e-38
Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 14/223 (6%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
++IG G+F V K A+K++ K +L KK+ M E V +L+++ HP ++
Sbjct: 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNV-LLKNLKHPFLV 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T +LY V++ + GG+LF + + F E ++F +ASA+ YLH I++
Sbjct: 60 GLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGV 555
RD+KPEN+L++ G HV VL DFGL + + P T CGTP Y+APE+L + Y
Sbjct: 120 RDLKPENILLDSQG-HV-VLT--DFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDR 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFP 598
+D W G +LY +L G PPF S D +++D+IL P
Sbjct: 176 TVDWWCLGAVLYEMLYGLPPFYS--RDVSQMYDNILHKPLQLP 216
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 144 bits (365), Expect = 2e-38
Identities = 86/270 (31%), Positives = 138/270 (51%), Gaps = 20/270 (7%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPN 436
+ V ++G G+F V+ V +K A+K++ KS LL ++ + E E +IL N P
Sbjct: 3 FDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPW 62
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHDNY 495
I +L + + LYLV+E GGDL +++ +F E+ ++F L A+ +H
Sbjct: 63 IPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMG 122
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV----CGTPTYVAPEILN-- 549
VHRDIKPEN+L++ +G H+K+ DFG A R+ GTP Y+APE+L
Sbjct: 123 YVHRDIKPENVLIDRTG-HIKLA---DFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTM 178
Query: 550 ----ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDI 605
+ YGV+ D W+ GVI Y ++ G PF T+ + +++I++ Q P +
Sbjct: 179 NGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS--AKTYNNIMNFQRFLKFPEDPKV 236
Query: 606 SEEAKELISHMLESNPDLRFSAEDVLDHPW 635
S + +LI L R E + HP+
Sbjct: 237 SSDFLDLI-QSLLCGQKERLGYEGLCCHPF 265
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 140 bits (354), Expect = 9e-38
Identities = 87/265 (32%), Positives = 139/265 (52%), Gaps = 14/265 (5%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPN 436
RY + + IG+G+F + K C +K ID +K+ K K+ + EV +L + HPN
Sbjct: 1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN 60
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKN--VKFSEEDSKFMTQSLASALSYLHDN 494
I+ + N L++V+E GGDL I++ V FSE+ ++ L ++HD
Sbjct: 61 IVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR 120
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEILNES 551
I+HRDIK +N+ + +G V K+GDFG+A+++ M +T GTP Y++PEI
Sbjct: 121 KILHRDIKSQNIFLSKNG---MVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNR 177
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
Y K D+W+ G +LY L PF + N+ +L I G + SP + S + +
Sbjct: 178 PYNNKTDIWSLGCVLYELCTLKHPF--EGNNLHQLVLKICQGYFAPISPNF---SRDLRS 232
Query: 612 LISHMLESNPDLRFSAEDVLDHPWL 636
LIS + + +P R S +L P+L
Sbjct: 233 LISQLFKVSPRDRPSITSILKRPFL 257
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 142 bits (359), Expect = 1e-37
Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
+++G G+F V K + A+K + K +L M+E V L HP +
Sbjct: 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAW-EHPFLT 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T L+ V+E + GGDL I + +F E ++F + L +LH I++
Sbjct: 60 HLFCTFQTKEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLA-QRVLRPMF--TVCGTPTYVAPEILNESGYGV 555
RD+K +N+L++ G H+ K+ DFG+ + + T CGTP Y+APEIL Y
Sbjct: 120 RDLKLDNVLLDKDG-HI---KIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNE 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W+ GV+LY +L G PF + D+DELFD IL+ + FP W IS+EAK+ +S
Sbjct: 176 SVDWWSFGVLLYEMLIGQSPFHGE--DEDELFDSILNDRPHFPR--W--ISKEAKDCLSK 229
Query: 616 MLESNPDLRF-SAEDVLDHPW 635
+ E +P R D+ HP+
Sbjct: 230 LFERDPTKRLGVDGDIRQHPF 250
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 141 bits (357), Expect = 2e-37
Identities = 90/266 (33%), Positives = 140/266 (52%), Gaps = 22/266 (8%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
++IG G+F V K A+K++ K +L +K+ M E V +L++V HP ++
Sbjct: 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNV-LLKNVKHPFLV 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T +LY V++ + GG+LF + + F E ++F +ASAL YLH IV+
Sbjct: 60 GLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQR---VLRPMFTVCGTPTYVAPEILNESGYGV 555
RD+KPEN+L++ G HV VL DFGL + T CGTP Y+APE++ + Y
Sbjct: 120 RDLKPENILLDSQG-HV-VLT--DFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDN 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W G +LY +L G PPF D E++D+IL P S A ++
Sbjct: 176 TVDWWCLGAVLYEMLYGLPPFYC--RDVAEMYDNILHK----PLVLRPGASLTAWSILEE 229
Query: 616 MLESNPDLRFSAED----VLDHPWLE 637
+LE + R A++ + +HP+ E
Sbjct: 230 LLEKDRQRRLGAKEDFLEIQEHPFFE 255
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 139 bits (353), Expect = 2e-37
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 33/278 (11%)
Query: 378 RYSVGQIIGDGNFAVVRQVY--DKHKDMDCALKIIDKSKLLGKK-QMIENEVNILRSVNH 434
R+ G IG G F V D + M A+K I K + I +E+ +L + H
Sbjct: 1 RWQRGNKIGGGTFGKVYTAVNLDTGELM--AVKEIRIQDNDPKTIKEIADEMKVLELLKH 58
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN 494
PN++K ++Y+ +E GG L + + E + T L L+YLH +
Sbjct: 59 PNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH 118
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP-------MFTVCGTPTYVAPEI 547
IVHRDIKP N+ ++ +G V+K+GDFG A ++ + ++ GTP Y+APE+
Sbjct: 119 GIVHRDIKPANIFLDHNG----VIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEV 174
Query: 548 L---NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQY--GF----P 598
+ G+G D+W+ G ++ + G P+ D+ + G P
Sbjct: 175 ITGGKGKGHGRAADIWSLGCVVLEMATGKRPW--------SELDNEFQIMFHVGAGHKPP 226
Query: 599 SPYWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
P +S E K+ + LES+P R +A ++L HP++
Sbjct: 227 IPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV 264
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 140 bits (355), Expect = 3e-37
Identities = 87/276 (31%), Positives = 138/276 (50%), Gaps = 30/276 (10%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE--NEVNILRSVNHPNIIKL 440
++I +G + V V K A+K I+K L+ + Q+ + E +IL +P ++ +
Sbjct: 7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSM 66
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
++T L +V+E ++GGD + + ++ AL YLH+ IVHRD
Sbjct: 67 FCSFETKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRD 126
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFT------------------VCGTPTY 542
+KP+NLL+ G H+K+ DFGL++ L + T VCGTP Y
Sbjct: 127 LKPDNLLITSMG-HIKLT---DFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEY 182
Query: 543 VAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYW 602
+APE++ GYG +D WA G+ILY L G PF DT +ELF ++S +P
Sbjct: 183 IAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT--PEELFGQVISDDIEWPEGD- 239
Query: 603 DDISEEAKELISHMLESNPDLRF---SAEDVLDHPW 635
+ + +A++LIS +L NP R A +V H +
Sbjct: 240 EALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRF 275
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 139 bits (353), Expect = 9e-37
Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 50/292 (17%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLL--GKKQMIENEVNILRSVNHPNIIKLLD 442
+G G+ V V K ALK++DK +++ K + + E IL +++HP + L
Sbjct: 9 LGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYA 68
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ T L LV++ GG+LF + + SEE ++F + AL YLH IV+RD
Sbjct: 69 SFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRD 128
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLA-----------------------QRVLRPMFTVC 537
+KPEN+L+ SG H+ +L DF L+ + F
Sbjct: 129 LKPENILLHESG-HI-MLS--DFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETF-SE 183
Query: 538 ----------GTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF 587
GT Y+APE+++ G+G +D W G++LY +L G PF ++DE F
Sbjct: 184 EPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGS--NRDETF 241
Query: 588 DDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRF----SAEDVLDHPW 635
+IL + FP +S A++LI +L +P R A ++ HP+
Sbjct: 242 SNILKKEVTFPGS--PPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPF 291
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 137 bits (347), Expect = 2e-36
Identities = 82/273 (30%), Positives = 154/273 (56%), Gaps = 25/273 (9%)
Query: 372 PSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRS 431
P LL+ Y IG+G+ +V +KH A+K++D K +++++ NEV I+R
Sbjct: 19 PRSLLENYIK---IGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ-QRRELLFNEVVIMRD 74
Query: 432 VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYL 491
H N++++ Y EL++++E ++GG L D +S+ + +EE + +S+ AL YL
Sbjct: 75 YQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ-TRLNEEQIATVCESVLQALCYL 133
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEIL 548
H ++HRDIK +++L+ + G +K+ DFG ++ + + ++ GTP ++APE++
Sbjct: 134 HSQGVIHRDIKSDSILLTLDG----RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVI 189
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQ--DELFDDILSGQYGFPSPYWDD-- 604
+ + YG ++D+W+ G+++ ++ G PP+ SD+ Q L D P P +
Sbjct: 190 SRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS--------PPPKLKNAH 241
Query: 605 -ISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
IS ++ + ML P R +A+++LDHP+L
Sbjct: 242 KISPVLRDFLERMLTREPQERATAQELLDHPFL 274
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 135 bits (342), Expect = 5e-36
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Query: 424 NEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMT 481
NE+ IL + HPNII + + +N L + +E GG L+D I + F EE +
Sbjct: 48 NEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYL 107
Query: 482 QSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF----TVC 537
+ SA+SY+H I+HRDIK N+ + +G ++K+GDFG++ ++L + TV
Sbjct: 108 FQIVSAVSYIHKAGILHRDIKTLNIFLTKAG----LIKLGDFGIS-KILGSEYSMAETVV 162
Query: 538 GTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYG- 596
GTP Y++PE+ Y K D+WA G +LY LL F D + L I+ G Y
Sbjct: 163 GTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTF--DATNPLNLVVKIVQGNYTP 220
Query: 597 FPSPYWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
S Y S E L+ +L+ +P+ R +A++VLD P L
Sbjct: 221 VVSVY----SSELISLVHSLLQQDPEKRPTADEVLDQPLL 256
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 136 bits (345), Expect = 6e-36
Identities = 74/256 (28%), Positives = 108/256 (42%), Gaps = 62/256 (24%)
Query: 425 EVNILRSVNHPNIIKLLDEY--DTNNELYLVIE--------LIKGGDLFDAISKNVKFSE 474
E+ +L+ + HPNI++L + +Y+V E L+ S VKF+E
Sbjct: 48 EIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLD--------SPEVKFTE 99
Query: 475 EDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA---QRVLR 531
K + L L YLH N I+HRDIK N+L+ G VLK+ DFGLA +
Sbjct: 100 SQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDG----VLKLADFGLARPYTKRNS 155
Query: 532 PMFT--VCGTPTYVAPEIL-NESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQDELF 587
+T V T Y PE+L + YG ++D+W+ G IL L G P F S +Q E
Sbjct: 156 ADYTNRVI-TLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKI 214
Query: 588 DDILSGQYGFPSP-YWDD---------------------------ISEEAKELISHMLES 619
++ G P+ W I A +L+ +L
Sbjct: 215 FELC----GSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTL 270
Query: 620 NPDLRFSAEDVLDHPW 635
+P R SA+ L H +
Sbjct: 271 DPKKRISADQALQHEY 286
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 135 bits (342), Expect = 8e-36
Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 14/266 (5%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
+ +++ + IG G+F V + DK + A+K+ID + + + I+ E+ L P
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPY 60
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
I K + ++L++++E GG D + K K E F+ + + L YLH+
Sbjct: 61 ITKYYGSFLKGSKLWIIMEYCGGGSCLDLL-KPGKLDETYIAFILREVLLGLEYLHEEGK 119
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFG----LAQRVLRPMFTVCGTPTYVAPEILNESG 552
+HRDIK N+L+ G +K+ DFG L + + T GTP ++APE++ +SG
Sbjct: 120 IHRDIKAANILLSEEG----DVKLADFGVSGQLTSTMSK-RNTFVGTPFWMAPEVIKQSG 174
Query: 553 YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKEL 612
Y K D+W+ G+ L G PP SD + LF L + PS + S+ K+
Sbjct: 175 YDEKADIWSLGITAIELAKGEPPL-SDLHPMRVLF---LIPKNNPPSLEGNKFSKPFKDF 230
Query: 613 ISHMLESNPDLRFSAEDVLDHPWLER 638
+S L +P R SA+++L H ++++
Sbjct: 231 VSLCLNKDPKERPSAKELLKHKFIKK 256
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 136 bits (344), Expect = 1e-35
Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 23/267 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNIIK 439
++G G+F V K D A+KI+ K ++ M+E V L P + +
Sbjct: 7 VLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-KPPFLTQ 65
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T + LY V+E + GGDL I + KF E + F +A L +LH I++R
Sbjct: 66 LHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYR 125
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGVK 556
D+K +N++++ G H+K+ DFG+ + + T CGTP Y+APEI+ YG
Sbjct: 126 DLKLDNVMLDAEG-HIKI---ADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKS 181
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+D WA GV+LY +L G PPF D D+DELF I+ +P +S+EA + +
Sbjct: 182 VDWWAFGVLLYEMLAGQPPF--DGEDEDELFQSIMEHNVSYPK----SLSKEAVSICKGL 235
Query: 617 LESNPDLRFSA-----EDVLDHPWLER 638
L +P R D+ +H + R
Sbjct: 236 LTKHPAKRLGCGPTGERDIREHAFFRR 262
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 134 bits (340), Expect = 2e-35
Identities = 77/266 (28%), Positives = 145/266 (54%), Gaps = 28/266 (10%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE---NEVNILRSVNHPNIIKLL 441
IG+G+ +V DK A+K +D L K+Q E NEV I+R HPNI+++
Sbjct: 27 IGEGSTGIVCIATDKSTGRQVAVKKMD----LRKQQRRELLFNEVVIMRDYQHPNIVEMY 82
Query: 442 DEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
Y +EL++V+E ++GG L D ++ + +EE + ++ ALS+LH ++HRDI
Sbjct: 83 SSYLVGDELWVVMEFLEGGALTDIVTH-TRMNEEQIATVCLAVLKALSFLHAQGVIHRDI 141
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEILNESGYGVKID 558
K +++L+ G +K+ DFG +V + + ++ GTP ++APE+++ YG ++D
Sbjct: 142 KSDSILLTSDG----RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVD 197
Query: 559 VWAAGVILYILLCGFPPFVSDTNDQ--DELFDDILSGQYGFPSPYWDD---ISEEAKELI 613
+W+ G+++ ++ G PP+ ++ Q + D+ P + +S + +
Sbjct: 198 IWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDN--------LPPKLKNLHKVSPRLRSFL 249
Query: 614 SHMLESNPDLRFSAEDVLDHPWLERS 639
ML +P R +A ++L+HP+L ++
Sbjct: 250 DRMLVRDPAQRATAAELLNHPFLAKA 275
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 135 bits (342), Expect = 2e-35
Identities = 85/273 (31%), Positives = 144/273 (52%), Gaps = 27/273 (9%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNIL-RSVNHPNIIK 439
++IG G++A V V K + A+K++ K + + + ++ E ++ ++ NHP ++
Sbjct: 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVG 60
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T + L+ VIE + GGDL + + K EE ++F + ++ AL+YLH+ I++R
Sbjct: 61 LHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYR 120
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV---CGTPTYVAPEILNESGYGVK 556
D+K +N+L++ G H+K+ D+G+ + LRP T CGTP Y+APEIL YG
Sbjct: 121 DLKLDNVLLDSEG-HIKLT---DYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFS 176
Query: 557 IDVWAAGVILYILLCGFPPF-------VSDTNDQDELFDDILSGQYGFPSPYWDDISEEA 609
+D WA GV+++ ++ G PF D N +D LF IL Q P +S +A
Sbjct: 177 VDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR----SLSVKA 232
Query: 610 KELISHMLESNPDLRFSA------EDVLDHPWL 636
++ L +P R D+ HP+
Sbjct: 233 ASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 265
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 134 bits (339), Expect = 3e-35
Identities = 78/264 (29%), Positives = 145/264 (54%), Gaps = 12/264 (4%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
++Y+ + IG G V D + A+K ++ + KK++I NE+ ++R HPN
Sbjct: 19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ-PKKELIINEILVMRENKHPN 77
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
I+ LD Y +EL++V+E + GG L D +++ E + + AL +LH N +
Sbjct: 78 IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC-MDEGQIAAVCRECLQALEFLHSNQV 136
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGY 553
+HRDIK +N+L+ M G +K+ DFG ++ T+ GTP ++APE++ Y
Sbjct: 137 IHRDIKSDNILLGMDGS----VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 192
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELI 613
G K+D+W+ G++ ++ G PP++++ N L+ +G +P + +S ++ +
Sbjct: 193 GPKVDIWSLGIMAIEMVEGEPPYLNE-NPLRALYLIATNGTPELQNP--EKLSAIFRDFL 249
Query: 614 SHMLESNPDLRFSAEDVLDHPWLE 637
+ LE + + R SA+++L HP+L+
Sbjct: 250 NRCLEMDVEKRGSAKELLQHPFLK 273
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 134 bits (340), Expect = 5e-35
Identities = 85/279 (30%), Positives = 142/279 (50%), Gaps = 41/279 (14%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNI----------LRSV 432
++IG G++A V V K A+K+I KK+++ ++ +I +
Sbjct: 1 RVIGRGSYAKVLLVELKKTRRIYAMKVI-------KKELVNDDEDIDWVQTEKHVFETAS 53
Query: 433 NHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH 492
NHP ++ L + T + L+ VIE + GGDL + + K EE ++F + ++ AL++LH
Sbjct: 54 NHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLH 113
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILN 549
+ I++RD+K +N+L++ G H+K+ D+G+ + +RP T CGTP Y+APEIL
Sbjct: 114 ERGIIYRDLKLDNVLLDAEG-HIKLT---DYGMCKEGIRPGDTTSTFCGTPNYIAPEILR 169
Query: 550 ESGYGVKIDVWAAGVILYILLCGFPPF-------VSDTNDQDELFDDILSGQYGFPSPYW 602
YG +D WA GV+++ ++ G PF D N +D LF IL Q P
Sbjct: 170 GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPR--- 226
Query: 603 DDISEEAKELISHMLESNPDLRFSAE------DVLDHPW 635
+S +A ++ L +P R D+ HP+
Sbjct: 227 -SLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPF 264
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 132 bits (333), Expect = 9e-35
Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 15/263 (5%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPN 436
+Y +++G G F +V K +K I ++ + +NE +L+ ++HPN
Sbjct: 1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDS-KFMTQSLASALSYLHD 493
II+ + + + L +V+E GG L + I K N E+ F Q L AL ++H
Sbjct: 61 IIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILL-ALHHVHT 119
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNES 551
I+HRD+K +N+L++ H V+K+GDFG+++ + +TV GTP Y++PE+
Sbjct: 120 KLILHRDLKTQNILLDK---HKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGK 176
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
Y K D+WA G +LY L F + + L I+SG + +P D S + ++
Sbjct: 177 PYNQKSDIWALGCVLYELASLKRAF--EAANLPALVLKIMSGTF---APISDRYSPDLRQ 231
Query: 612 LISHMLESNPDLRFSAEDVLDHP 634
LI ML +P R ++ P
Sbjct: 232 LILSMLNLDPSKRPQLSQIMAQP 254
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 133 bits (336), Expect = 1e-34
Identities = 87/290 (30%), Positives = 134/290 (46%), Gaps = 49/290 (16%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE----NEVNILRSVNHPNIIKL 440
I +G + VV + DK ALK K K+ +K+ E+NIL + HPNI+ +
Sbjct: 13 IEEGTYGVVYRARDKKTGEIVALK---KLKMEKEKEGFPITSLREINILLKLQHPNIVTV 69
Query: 441 LDEY---DTNNELYLVIELIKGGDLFDAIS-KNVKFSEEDSKFMTQSLASALSYLHDNYI 496
E +++Y+V+E ++ DL + F + + K + L S +++LHDN+I
Sbjct: 70 -KEVVVGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWI 127
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLA---QRVLRPMFTVCGTPTYVAPEIL-NESG 552
+HRD+K NLL+ G +LK+ DFGLA L+P + T Y APE+L
Sbjct: 128 LHRDLKTSNLLLNNRG----ILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKE 183
Query: 553 YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF----------DDILSGQYGFPS--- 599
Y ID+W+ G I LL P F ++ D+L + I G P
Sbjct: 184 YSTAIDMWSVGCIFAELLTKKPLFPG-KSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKK 242
Query: 600 ------PYW--------DDISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
PY +S+ +L++ +L +P R SAED L HP+
Sbjct: 243 KTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPY 292
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 131 bits (330), Expect = 2e-34
Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 18/263 (6%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALKII----DKSKLLGKKQMIENEVNILRSVNHPNI 437
G+++G G F V YD + A+K + D + + +E E+ +L+++ H I
Sbjct: 7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERI 66
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
++ + L + +E + GG + D + +E ++ T+ + + YLH N IV
Sbjct: 67 VQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIV 126
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV------LRPMFTVCGTPTYVAPEILNES 551
HRDIK N+L + +G +K+GDFG ++R+ M +V GTP +++PE+++
Sbjct: 127 HRDIKGANILRDSAGN----VKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGE 182
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
GYG K DVW+ G + +L PP+ ++ +F I + P +S +A+
Sbjct: 183 GYGRKADVWSVGCTVVEMLTEKPPW-AEFEAMAAIF-KIATQPTNPQLP--SHVSPDARN 238
Query: 612 LISHMLESNPDLRFSAEDVLDHP 634
+ N R SAE++L H
Sbjct: 239 FLRRTFVENAKKRPSAEELLRHF 261
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 131 bits (332), Expect = 3e-34
Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 23/265 (8%)
Query: 388 GNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNH-PNIIKLLDE 443
G +VR+V A+K++ K+ ++ K + E+ E +L +V P ++ L
Sbjct: 14 GKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYA 73
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKP 503
+ T+ +L+L+++ + GG+LF + + F+E + + + AL +LH I++RDIK
Sbjct: 74 FQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKL 133
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRVLRP----MFTVCGTPTYVAPEILN--ESGYGVKI 557
EN+L++ G HV + DFGL++ L ++ CGT Y+APE++ G+ +
Sbjct: 134 ENILLDSEG-HV---VLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAV 189
Query: 558 DVWAAGVILYILLCGFPPFVSD--TNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
D W+ GV+ + LL G PF D N Q E+ IL + FP +S EA++ I
Sbjct: 190 DWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPK----TMSAEARDFIQK 245
Query: 616 MLESNPDLRFSAEDVLD---HPWLE 637
+LE +P R A + HP+ +
Sbjct: 246 LLEKDPKKRLGANGADEIKNHPFFQ 270
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 129 bits (327), Expect = 7e-34
Identities = 77/277 (27%), Positives = 123/277 (44%), Gaps = 35/277 (12%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII 438
Y + ++IG G AVV + A+K ID K + EV + NHPN++
Sbjct: 3 YELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVV 62
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLAS---ALSYLHDNY 495
K + +EL+LV+ + GG L D + + D + L L YLH N
Sbjct: 63 KYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG 122
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLA-------QRVLRPMFTVCGTPTYVAPEIL 548
+HRDIK N+L+ G +K+ DFG++ R + T GTP ++APE++
Sbjct: 123 QIHRDIKAGNILLGEDGS----VKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVM 178
Query: 549 NE-SGYGVKIDVWAAGVILYILLCGFPPF----------VSDTNDQDELFDDILSGQYGF 597
+ GY K D+W+ G+ L G P+ ++ ND L +Y
Sbjct: 179 EQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKY-- 236
Query: 598 PSPYWDDISEEAKELISHMLESNPDLRFSAEDVLDHP 634
S+ +++IS L+ +P R +AE++L H
Sbjct: 237 --------SKSFRKMISLCLQKDPSKRPTAEELLKHK 265
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 130 bits (328), Expect = 1e-33
Identities = 91/301 (30%), Positives = 133/301 (44%), Gaps = 57/301 (18%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKII----DKSKLLGKKQMIENEVNILRSV-- 432
Y IG+G + V + D + ALK + + G E+ +L+ +
Sbjct: 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE---GIPLSTLREIALLKQLES 57
Query: 433 -NHPNIIKLLD-----EYDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMTQSL 484
HPNI++LLD D +L LV E + DL +SK K E K + + L
Sbjct: 58 FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQL 116
Query: 485 ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPT 541
+ +LH + IVHRD+KP+N+LV G +K+ DFGLA R+ + +V T
Sbjct: 117 LRGVDFLHSHRIVHRDLKPQNILVTSDG----QVKIADFGLA-RIYSFEMALTSVVVTLW 171
Query: 542 YVAPEILNESGYGVKIDVWAAGVILYILLCGFPPF--VSDTNDQDELFDDILSGQYGFPS 599
Y APE+L +S Y +D+W+ G I L P F S+ + D++FD I G PS
Sbjct: 172 YRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVI-----GLPS 226
Query: 600 ----P-----YWD---------------DISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
P +I EE +L+ ML NP R SA + L HP+
Sbjct: 227 EEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPY 286
Query: 636 L 636
Sbjct: 287 F 287
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 128 bits (325), Expect = 1e-33
Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 14/262 (5%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII 438
+ + + +G+G++ V + K A+K++ + Q I E++IL+ + P I+
Sbjct: 5 FDILEKLGEGSYGSVYKAIHKETGQVVAIKVV---PVEEDLQEIIKEISILKQCDSPYIV 61
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
K Y N +L++V+E G + D + N +EE+ + L YLH N +
Sbjct: 62 KYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKI 121
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAPEILNESGYG 554
HRDIK N+L+ G K+ DFG++ ++ M TV GTP ++APE++ E GY
Sbjct: 122 HRDIKAGNILLNEEG----QAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYN 177
Query: 555 VKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
K D+W+ G+ + G PP+ SD + +F P + S E + +
Sbjct: 178 NKADIWSLGITAIEMAEGKPPY-SDIHPMRAIFMIPNKPPPTLSDP--EKWSPEFNDFVK 234
Query: 615 HMLESNPDLRFSAEDVLDHPWL 636
L +P+ R SA +L HP++
Sbjct: 235 KCLVKDPEERPSAIQLLQHPFI 256
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 129 bits (325), Expect = 2e-33
Identities = 80/269 (29%), Positives = 146/269 (54%), Gaps = 15/269 (5%)
Query: 372 PSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRS 431
P K RY + IG G V D + A+K I+ K KK++I NE+ +++
Sbjct: 17 PKKKYTRY---EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ-PKKELIINEILVMKE 72
Query: 432 VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYL 491
+ +PNI+ LD + +EL++V+E + GG L D +++ E + + AL +L
Sbjct: 73 LKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETC-MDEAQIAAVCRECLQALEFL 131
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEIL 548
H N ++HRDIK +N+L+ M G +K+ DFG ++ T+ GTP ++APE++
Sbjct: 132 HANQVIHRDIKSDNVLLGMDGS----VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV 187
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEE 608
YG K+D+W+ G++ ++ G PP++++ N L+ +G +P + +S
Sbjct: 188 TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE-NPLRALYLIATNGTPELQNP--EKLSPI 244
Query: 609 AKELISHMLESNPDLRFSAEDVLDHPWLE 637
++ ++ LE + + R SA+++L HP+L+
Sbjct: 245 FRDFLNRCLEMDVEKRGSAKELLQHPFLK 273
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 130 bits (329), Expect = 2e-33
Identities = 95/308 (30%), Positives = 151/308 (49%), Gaps = 48/308 (15%)
Query: 371 IPSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALK-IIDKSKLLGKKQMIENEVNIL 429
I +L++Y + Q +G G + +V + D+ ALK I D + Q E+ L
Sbjct: 1 IDKHILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFL 60
Query: 430 RSV-NHPNIIKLLDEY--DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK-FMTQSLA 485
+ + +HPNI+KLL+ + + ++YLV E ++ DL I N+ E+ K ++ L
Sbjct: 61 QELGDHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAVIRANIL--EDVHKRYIMYQLL 117
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT---Y 542
AL Y+H ++HRD+KP N+L+ S C VK+ DFGLA R L + P Y
Sbjct: 118 KALKYIHSGNVIHRDLKPSNILLN-SDCRVKL---ADFGLA-RSLSELEENPENPVLTDY 172
Query: 543 VA------PEILNESG-YGVKIDVWAAGVILYILLCGFPPFV-SDTNDQDELF------- 587
VA PEIL S Y +D+W+ G IL +L G P F + T +Q E
Sbjct: 173 VATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPP 232
Query: 588 --DDILSGQYGFPSPYWDDI---------------SEEAKELISHMLESNPDLRFSAEDV 630
+DI S + F + D + S++A +L+ +L NP+ R +AE+
Sbjct: 233 SAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEA 292
Query: 631 LDHPWLER 638
L+HP++ +
Sbjct: 293 LEHPYVAQ 300
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 130 bits (327), Expect = 3e-33
Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 23/267 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNIIK 439
++G G+F V K D A+KI+ K ++ M+E V L+ P + +
Sbjct: 7 VLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQD-KPPFLTQ 65
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T + LY V+E + GGDL I + KF E + F ++ L +LH I++R
Sbjct: 66 LHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYR 125
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV---CGTPTYVAPEILNESGYGVK 556
D+K +N++++ G H+K+ DFG+ + + T CGTP Y+APEI+ YG
Sbjct: 126 DLKLDNVMLDSEG-HIKI---ADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKS 181
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+D WA GV+LY +L G PPF D D+DELF I+ +P +S+EA + +
Sbjct: 182 VDWWAYGVLLYEMLAGQPPF--DGEDEDELFQSIMEHNVSYPK----SLSKEAVSICKGL 235
Query: 617 LESNPDLRFSA-----EDVLDHPWLER 638
+ +P R D+ +H + R
Sbjct: 236 MTKHPSKRLGCGPEGERDIREHAFFRR 262
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 129 bits (324), Expect = 3e-33
Identities = 78/264 (29%), Positives = 145/264 (54%), Gaps = 12/264 (4%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
++Y+ + IG G V D + A+K ++ + KK++I NE+ ++R +PN
Sbjct: 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ-PKKELIINEILVMRENKNPN 77
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
I+ LD Y +EL++V+E + GG L D +++ E + + AL +LH N +
Sbjct: 78 IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC-MDEGQIAAVCRECLQALDFLHSNQV 136
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGY 553
+HRDIK +N+L+ M G +K+ DFG ++ T+ GTP ++APE++ Y
Sbjct: 137 IHRDIKSDNILLGMDGS----VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 192
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELI 613
G K+D+W+ G++ ++ G PP++++ N L+ +G +P + +S ++ +
Sbjct: 193 GPKVDIWSLGIMAIEMVEGEPPYLNE-NPLRALYLIATNGTPELQNP--ERLSAVFRDFL 249
Query: 614 SHMLESNPDLRFSAEDVLDHPWLE 637
+ LE + D R SA+++L HP+L+
Sbjct: 250 NRCLEMDVDRRGSAKELLQHPFLK 273
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 125 bits (315), Expect = 2e-32
Identities = 82/266 (30%), Positives = 136/266 (51%), Gaps = 17/266 (6%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPN 436
+Y + IG+G+F V K +K I+ SK+ K ++ EV +L ++ HPN
Sbjct: 1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPN 60
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAIS--KNVKFSEEDSKFMTQSLASALSYLHDN 494
I++ + ++ N LY+V++ +GGDL+ I+ + V F E+ + AL ++HD
Sbjct: 61 IVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR 120
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF----TVCGTPTYVAPEILNE 550
I+HRDIK +N+ + G +K+GDFG+A RVL T GTP Y++PEI
Sbjct: 121 KILHRDIKSQNIFLTKDG----TIKLGDFGIA-RVLNSTVELARTCIGTPYYLSPEICEN 175
Query: 551 SGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAK 610
Y K D+WA G +LY + F + + L I+ G Y S ++ S + +
Sbjct: 176 RPYNNKSDIWALGCVLYEMCTLKHAF--EAGNMKNLVLKIIRGSYPPVSSHY---SYDLR 230
Query: 611 ELISHMLESNPDLRFSAEDVLDHPWL 636
L+S + + NP R S +L+ ++
Sbjct: 231 NLVSQLFKRNPRDRPSVNSILEKNFI 256
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 125 bits (315), Expect = 3e-32
Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 17/259 (6%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVN 433
L + + + IG G F+ V + ALK + +++ K Q E+++L+ +N
Sbjct: 1 LANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLN 60
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI---SKNVKFSEEDS--KFMTQSLASAL 488
HPN+IK LD + +NEL +V+EL GDL I K + E + K+ Q L SA+
Sbjct: 61 HPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQ-LCSAV 119
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ---RVLRPMFTVCGTPTYVAP 545
++H ++HRDIKP N+ + +G V+K+GD GL + ++ GTP Y++P
Sbjct: 120 EHMHSRRVMHRDIKPANVFITATG----VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP 175
Query: 546 EILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDI 605
E ++E+GY K D+W+ G +LY + PF D + L I Q +P +
Sbjct: 176 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKI--EQCDYPPLPTEHY 233
Query: 606 SEEAKELISHMLESNPDLR 624
SE+ +EL+S + +PD R
Sbjct: 234 SEKLRELVSMCIYPDPDQR 252
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 125 bits (315), Expect = 3e-32
Identities = 78/264 (29%), Positives = 135/264 (51%), Gaps = 18/264 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G GN VV +V + A+K I ++ I E++IL N P I+ +
Sbjct: 9 LGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAF 68
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHDNY-IVHRDI 501
N ++ + +E + GG L D I K V+ E + ++ L+YLH+ + I+HRD+
Sbjct: 69 YNNGDISICMEYMDGGSL-DKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDV 127
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM-FTVCGTPTYVAPEILNESGYGVKIDVW 560
KP N+LV G +K+ DFG++ +++ + T GT +Y+APE + + Y VK D+W
Sbjct: 128 KPSNILVNSRG----QIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIW 183
Query: 561 AAGVILYILLCG-FP-PFVSDTNDQD-ELFDDILSGQYGFPSPYW--DDISEEAKELISH 615
+ G+ L L G FP P +D D EL I++ P P S + ++ ++
Sbjct: 184 SLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNE----PPPRLPSGKFSPDFQDFVNL 239
Query: 616 MLESNPDLRFSAEDVLDHPWLERS 639
L +P R S +++L+HP++++
Sbjct: 240 CLIKDPRERPSYKELLEHPFIKKY 263
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 124 bits (314), Expect = 7e-32
Identities = 85/296 (28%), Positives = 134/296 (45%), Gaps = 44/296 (14%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALK---IIDKSKLLGKKQMIENEVNILRSVN 433
+Y V ++G+G + VV + +K A+K + + + K + EV +LR +
Sbjct: 1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTAL--REVKVLRQLR 58
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQSLASALSYLH 492
H NI+ L + + LYLV E + L + + + + + L A++Y H
Sbjct: 59 HENIVNLKEAFRRKGRLYLVFEYV-ERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCH 117
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFG----LAQRVLRPMFTVCGTPTYVAPEIL 548
+ I+HRDIKPEN+LV SG VLK+ DFG L R P+ T Y APE+L
Sbjct: 118 SHNIIHRDIKPENILVSESG----VLKLCDFGFARALRARPASPLTDYVATRWYRAPELL 173
Query: 549 -NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF--------------DDILSG 593
++ YG +DVWA G I+ LL G P F D +D D+L+ + S
Sbjct: 174 VGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD-SDIDQLYLIQKCLGPLPPSHQELFSSN 232
Query: 594 QY----GFPSPYWDD---------ISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
FP P + +S A + + L +P R + +++L HP+
Sbjct: 233 PRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF 288
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 124 bits (312), Expect = 9e-32
Identities = 86/263 (32%), Positives = 131/263 (49%), Gaps = 21/263 (7%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPNIIKLLD 442
+G G F V K A K +DK +L +K QM NE IL V+ I+ L
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60
Query: 443 EYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
++T ++L LV+ L+ GGDL I F E + F + L +LH IV+RD
Sbjct: 61 AFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRD 120
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNESGYGVKID 558
+KPEN+L++ G +V ++ D GLA + + + GTP Y+APE+L Y +D
Sbjct: 121 LKPENVLLDDHG-NV---RISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVD 176
Query: 559 VWAAGVILYILLCGFPPFVS--DTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+A G LY ++ G PF + +++EL L +P D S EAK+L +
Sbjct: 177 WFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYP----DKFSPEAKDLCEAL 232
Query: 617 LESNPDLRF-----SAEDVLDHP 634
L+ +P+ R SA++V +HP
Sbjct: 233 LQKDPEKRLGCRGGSADEVREHP 255
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 126 bits (317), Expect = 1e-31
Identities = 91/306 (29%), Positives = 141/306 (46%), Gaps = 66/306 (21%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKL 440
++IG G F VR V K A+KI+ K+ +L K+Q+ I E +IL + ++K+
Sbjct: 7 KVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKM 66
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ LYL++E + GGD+ + K SEE ++F A+ +H +HRD
Sbjct: 67 FYSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRD 126
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLA---QRVLRPMF----------------------- 534
IKP+NLL++ G HV K+ DFGL ++ R F
Sbjct: 127 IKPDNLLLDAKG-HV---KLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKA 182
Query: 535 ------------TVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTND 582
+ GTP Y+APE+ ++GY D W+ GVI+Y +L G+PPF S+T
Sbjct: 183 ETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET-- 240
Query: 583 QDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRF-----------SAEDVL 631
E + +++ + P ISE+AK+LI LRF E++
Sbjct: 241 PQETYRKVMNWKETLVFPPEVPISEKAKDLI---------LRFCTDSENRIGSNGVEEIK 291
Query: 632 DHPWLE 637
HP+ E
Sbjct: 292 SHPFFE 297
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 125 bits (314), Expect = 1e-31
Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 19/257 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNIL-RSVNHPNIIK 439
++IG G++A V V K D A+K++ K + + + ++ E ++ ++ ++P ++
Sbjct: 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVG 60
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T + L+LVIE + GGDL + + K EE ++F + AL++LH+ I++R
Sbjct: 61 LHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYR 120
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPEILNESGYGVK 556
D+K +N+L++ G H+K+ D+G+ + L P T CGTP Y+APEIL YG
Sbjct: 121 DLKLDNVLLDADG-HIKLT---DYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFS 176
Query: 557 IDVWAAGVILYILLCGFPPF-----VSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
+D WA GV+++ ++ G PF D N +D LF IL P +S +A
Sbjct: 177 VDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPR----FLSVKASH 232
Query: 612 LISHMLESNPDLRFSAE 628
++ L +P R +
Sbjct: 233 VLKGFLNKDPKERLGCQ 249
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 124 bits (313), Expect = 2e-31
Identities = 82/262 (31%), Positives = 131/262 (50%), Gaps = 23/262 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNIIK 439
++G G+F V K D A+KI+ K ++ M+E V L S P + +
Sbjct: 7 VLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLAL-SGKPPFLTQ 65
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHR 499
L + T + LY V+E + GGDL I + +F E + F +A L +LH I++R
Sbjct: 66 LHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYR 125
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV---CGTPTYVAPEILNESGYGVK 556
D+K +N++++ G H+K+ DFG+ + + T CGTP Y+APEI+ YG
Sbjct: 126 DLKLDNVMLDSEG-HIKI---ADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKS 181
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
+D WA GV+LY +L G PF + D+DELF I+ +P +S+EA + +
Sbjct: 182 VDWWAFGVLLYEMLAGQAPF--EGEDEDELFQSIMEHNVAYPK----SMSKEAVAICKGL 235
Query: 617 LESNPDLRFSA-----EDVLDH 633
+ +P R D+ +H
Sbjct: 236 MTKHPGKRLGCGPEGERDIKEH 257
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 123 bits (310), Expect = 2e-31
Identities = 82/276 (29%), Positives = 150/276 (54%), Gaps = 28/276 (10%)
Query: 383 QIIGDGNFA---VVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNH-P 435
+++G G + +VR+V A+K++ K+ ++ K + E+ E +L + P
Sbjct: 6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 65
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY 495
++ L + T+ +L+L+++ I GG+LF +S+ +F E++ + + + AL +LH
Sbjct: 66 FLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLG 125
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP----MFTVCGTPTYVAPEIL--N 549
I++RDIK EN+L++ +G HV VL DFGL++ ++ CGT Y+AP+I+
Sbjct: 126 IIYRDIKLENILLDSNG-HV-VLT--DFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGG 181
Query: 550 ESGYGVKIDVWAAGVILYILLCGFPPFVSD--TNDQDELFDDILSGQYGFPSPYWDDISE 607
+ G+ +D W+ GV++Y LL G PF D N Q E+ IL + PY ++S
Sbjct: 182 DGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE----PPYPQEMSA 237
Query: 608 EAKELISHMLESNPDLRF-----SAEDVLDHPWLER 638
AK++I +L +P R A+++ HP+ ++
Sbjct: 238 LAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQK 273
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 121 bits (307), Expect = 4e-31
Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 27/268 (10%)
Query: 384 IIGDGNFAVVRQ--VYDKH-KDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKL 440
+G+G F V + + K K + A+K + + +++ E +++ + HPN+++L
Sbjct: 2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRL 61
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKN-VKFSEEDSKFMTQS--------LASALSYL 491
L LYLV+E ++GGDL D + K+ F + ++ +A + YL
Sbjct: 62 LGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYL 121
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYV-----APE 546
VHRD+ N LV V+K+ DFGL++ V + T + APE
Sbjct: 122 ASKKFVHRDLAARNCLV----GEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPE 177
Query: 547 ILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDI 605
L + + K DVW+ GV+L+ I G P+ +N +E+ + + G Y P P +
Sbjct: 178 SLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN--EEVLEYLRKG-YRLPKP--EYC 232
Query: 606 SEEAKELISHMLESNPDLRFSAEDVLDH 633
+E EL+ + +P+ R + ++++
Sbjct: 233 PDELYELMLSCWQLDPEDRPTFSELVER 260
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 122 bits (308), Expect = 4e-31
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 40/284 (14%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSV-NHPN 436
+ + ++IG+G + V + K A+KI+D + +++ I+ E NILR NHPN
Sbjct: 7 IFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE--DEEEEIKEEYNILRKYSNHPN 64
Query: 437 IIKLLDEYDTNN------ELYLVIELIKGGDLFD----AISKNVKFSEEDSKFMTQSLAS 486
I + N +L+LV+EL GG + D K + EE ++ +
Sbjct: 65 IATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLR 124
Query: 487 ALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYV 543
L+YLH+N ++HRDIK +N+L+ + VK++ DFG++ ++ + T GTP ++
Sbjct: 125 GLAYLHENKVIHRDIKGQNILLTKNA-EVKLV---DFGVSAQLDSTLGRRNTFIGTPYWM 180
Query: 544 APEILN-----ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFP 598
APE++ ++ Y + DVW+ G+ L G PP D + LF I P
Sbjct: 181 APEVIACDEQPDASYDARSDVWSLGITAIELADGKPPL-CDMHPMRALF-KIPRN----P 234
Query: 599 SP------YWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
P W S++ + IS L N + R E++L+HP++
Sbjct: 235 PPTLKSPENW---SKKFNDFISECLIKNYEQRPFMEELLEHPFI 275
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 123 bits (310), Expect = 5e-31
Identities = 86/274 (31%), Positives = 150/274 (54%), Gaps = 27/274 (9%)
Query: 383 QIIGDGNFA---VVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNH-P 435
+++G G + +VR+V A+K++ K+ L+ K + +E+ E N+L V P
Sbjct: 6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSP 65
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY 495
++ L + T +L+L+++ + GG++F + + FSE++ +F + + AL +LH
Sbjct: 66 FLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLG 125
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP----MFTVCGTPTYVAPEIL-NE 550
IV+RDIK EN+L++ G HV VL DFGL++ L ++ CGT Y+APEI+ +
Sbjct: 126 IVYRDIKLENILLDSEG-HV-VLT--DFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGK 181
Query: 551 SGYGVKIDVWAAGVILYILLCGFPPFV--SDTNDQDELFDDILSGQYGFPSPYWDDISEE 608
G+G +D W+ G++++ LL G PF + N Q E+ IL FPS I E
Sbjct: 182 GGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPS----FIGPE 237
Query: 609 AKELISHMLESNPDLRF-----SAEDVLDHPWLE 637
A++L+ +L +P R A ++ +HP+ +
Sbjct: 238 AQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFK 271
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 124 bits (313), Expect = 5e-31
Identities = 89/288 (30%), Positives = 138/288 (47%), Gaps = 51/288 (17%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE--------NEVNILR 430
+ V ++IG G F V+ V +HK K + KLL K +MI+ E +I+
Sbjct: 45 FDVIKVIGRGAFGEVQLV--RHKSS----KQVYAMKLLSKFEMIKRSDSAFFWEERDIMA 98
Query: 431 SVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSY 490
N I++L + + LY+V+E + GGDL + +S N E+ ++F T + AL
Sbjct: 99 HANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMS-NYDIPEKWARFYTAEVVLALDA 157
Query: 491 LHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC----GTPTYVAPE 546
+H +HRD+KP+N+L++ SG H LK+ DFG ++ C GTP Y++PE
Sbjct: 158 IHSMGFIHRDVKPDNMLLDKSG-H---LKLADFGTCMKMDANGMVRCDTAVGTPDYISPE 213
Query: 547 ILNESG----YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYG------ 596
+L G YG + D W+ GV LY +L G PF + D L G Y
Sbjct: 214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF----------YADSLVGTYSKIMDHK 263
Query: 597 ----FPSPYWDDISEEAKELISHMLESNPDL--RFSAEDVLDHPWLER 638
FP +IS++AK+LI L R +++ HP+ +
Sbjct: 264 NSLTFPDDI--EISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKN 309
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 121 bits (306), Expect = 5e-31
Identities = 82/262 (31%), Positives = 130/262 (49%), Gaps = 17/262 (6%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
++G G + +V D + A+K I + + Q + E+ + + H NI++ L
Sbjct: 15 VLGKGTYGIVYAARDLSTQVRIAIKEIPE-RDSRYVQPLHEEIALHSYLKHRNIVQYLGS 73
Query: 444 YDTNNELYLVIELIKGGDLFDAISKN---VKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
N + +E + GG L + +K +E+ F T+ + L YLHDN IVHRD
Sbjct: 74 DSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRD 133
Query: 501 IKPENLLVEM-SGCHVKVLKVGDFGLAQRV--LRPMF-TVCGTPTYVAPEILNES--GYG 554
IK +N+LV SG V+K+ DFG ++R+ + P T GT Y+APE++++ GYG
Sbjct: 134 IKGDNVLVNTYSG----VVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYG 189
Query: 555 VKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
D+W+ G + + G PPF+ Q +F G + + +S EAK I
Sbjct: 190 APADIWSLGCTIVEMATGKPPFIELGEPQAAMFK---VGMFKIHPEIPESLSAEAKNFIL 246
Query: 615 HMLESNPDLRFSAEDVLDHPWL 636
E +PD R SA D+L P+L
Sbjct: 247 RCFEPDPDKRASAHDLLQDPFL 268
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 122 bits (307), Expect = 5e-31
Identities = 75/261 (28%), Positives = 148/261 (56%), Gaps = 22/261 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
IG+G+ +V +KH A+K +D K +++++ NEV I+R +H N++ + + Y
Sbjct: 30 IGEGSTGIVCIATEKHTGKQVAVKKMDLRKQ-QRRELLFNEVVIMRDYHHENVVDMYNSY 88
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPE 504
+EL++V+E ++GG L D ++ + + +EE + S+ ALSYLH+ ++HRDIK +
Sbjct: 89 LVGDELWVVMEFLEGGALTDIVT-HTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSD 147
Query: 505 NLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEILNESGYGVKIDVWA 561
++L+ G +K+ DFG +V + + ++ GTP ++APE+++ YG ++D+W+
Sbjct: 148 SILLTSDG----RIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWS 203
Query: 562 AGVILYILLCGFPPFVSDTNDQ--DELFDDILSGQYGFPSPYWDD---ISEEAKELISHM 616
G+++ ++ G PP+ ++ Q + D++ P D +S + + M
Sbjct: 204 LGIMVIEMIDGEPPYFNEPPLQAMRRIRDNL--------PPRVKDSHKVSSVLRGFLDLM 255
Query: 617 LESNPDLRFSAEDVLDHPWLE 637
L P R +A+++L HP+L+
Sbjct: 256 LVREPSQRATAQELLQHPFLK 276
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 121 bits (305), Expect = 6e-31
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 31/230 (13%)
Query: 382 GQIIGDGNFAVVRQ-VY---DKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
G+ +G+G F V + K+++ A+K + + + + E I+R ++HPNI
Sbjct: 4 GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNI 63
Query: 438 IKLL-----DEYDTNNELYLVIELIKGGDLFDAI--SKNVKFSEED-SKFMTQSLASALS 489
+KLL +E L +V+E + GGDL D + ++ + S D F Q +A +
Sbjct: 64 VKLLGVCTEEE-----PLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQ-IARGME 117
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYV-----A 544
YL +HRD+ N LV + V+K+ DFGL+ R L + A
Sbjct: 118 YLESKNFIHRDLAARNCLVGEN----LVVKISDFGLS-RDLYDDDYYKVKGGKLPIRWMA 172
Query: 545 PEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSG 593
PE L E + K DVW+ GV+L+ I G P+ +N E+ + + G
Sbjct: 173 PESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSN--AEVLEYLKKG 220
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 120 bits (304), Expect = 1e-30
Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 31/259 (11%)
Query: 382 GQIIGDGNFAVVRQ-VY---DKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
G+ +G+G F V + K ++ A+K + + + + E I+R ++HPN+
Sbjct: 4 GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNV 63
Query: 438 IKLL-----DEYDTNNELYLVIELIKGGDLFDAISKN-VKFSEED-SKFMTQSLASALSY 490
+KLL +E LY+V+E ++GGDL + KN K S D F Q +A + Y
Sbjct: 64 VKLLGVCTEEE-----PLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQ-IARGMEY 117
Query: 491 LHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-PMFTVCGTP---TYVAPE 546
L +HRD+ N LV + V+K+ DFGL++ + + G ++APE
Sbjct: 118 LESKNFIHRDLAARNCLVGEN----LVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPE 173
Query: 547 ILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDI 605
L E + K DVW+ GV+L+ I G P+ +N +E+ + + +G Y P P +
Sbjct: 174 SLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSN--EEVLEYLKNG-YRLPQP--PNC 228
Query: 606 SEEAKELISHMLESNPDLR 624
E +L+ +P+ R
Sbjct: 229 PPELYDLMLQCWAEDPEDR 247
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 123 bits (310), Expect = 1e-30
Identities = 88/286 (30%), Positives = 137/286 (47%), Gaps = 55/286 (19%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKL 440
++IG G F VR V K A+KI+ K+ +L K+Q+ I E +IL + ++K+
Sbjct: 7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKM 66
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ LYL++E + GGD+ + K +EE+++F A+ +H +HRD
Sbjct: 67 FYSFQDKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRD 126
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLA---------------------------------- 526
IKP+NLL++ G HV K+ DFGL
Sbjct: 127 IKPDNLLLDSKG-HV---KLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKA 182
Query: 527 ---QRVLRPM-FTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTND 582
+R R + F+ GTP Y+APE+ ++GY D W+ GVI+Y +L G+PPF S+T
Sbjct: 183 ETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET-- 240
Query: 583 QDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAE 628
E + +++ + P ISE+AK+LI LRF E
Sbjct: 241 PQETYKKVMNWKETLIFPPEVPISEKAKDLI---------LRFCCE 277
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 121 bits (304), Expect = 1e-30
Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 29/269 (10%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNHPNIIKLL 441
+GDG F V + K + A KII + ++ +E+ E++IL HPNI+ L
Sbjct: 13 LGDGAFGKVYKAQHKETGLFAAAKIIQ----IESEEELEDFMVEIDILSECKHPNIVGLY 68
Query: 442 DEYDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ Y N+L+++IE GG L + + + +E +++ + + AL++LH + ++HRD
Sbjct: 69 EAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRD 128
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEILN-----ESG 552
+K N+L+ + G +K+ DFG++ + + T GTP ++APE++ ++
Sbjct: 129 LKAGNILLTLDG----DVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNP 184
Query: 553 YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD---ISEEA 609
Y K D+W+ G+ L L PP + N L IL P D S
Sbjct: 185 YDYKADIWSLGITLIELAQMEPPH-HELNPMRVLL-KILKS----EPPTLDQPSKWSSSF 238
Query: 610 KELISHMLESNPDLRFSAEDVLDHPWLER 638
+ + L +PD R +A ++L HP++
Sbjct: 239 NDFLKSCLVKDPDDRPTAAELLKHPFVSD 267
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 123 bits (310), Expect = 1e-30
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 66/314 (21%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPN 436
+ ++IG G F VR V K A+K + KS++ K Q+ ++ E ++L + P
Sbjct: 3 FHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPW 62
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
++ L + LYL++E + GGDL + K FSE+ ++F A+ +H
Sbjct: 63 VVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGF 122
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLA------------QRVL-------------- 530
+HRDIKP+N+L++ G H+ K+ DFGL+ Q++L
Sbjct: 123 IHRDIKPDNILIDRGG-HI---KLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNS 178
Query: 531 -----------------------RPM-FTVCGTPTYVAPEILNESGYGVKIDVWAAGVIL 566
R M ++ GTP Y+APEI + GYG + D W+ G I+
Sbjct: 179 VAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIM 238
Query: 567 YILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDI--SEEAKELISHMLESNPDLR 624
+ L G+PPF S+ + E + I++ + P DDI S EA++LI ++ +N + R
Sbjct: 239 FECLIGWPPFCSE--NSHETYRKIINWRETLYFP--DDIHLSVEAEDLIRRLI-TNAENR 293
Query: 625 F---SAEDVLDHPW 635
A ++ HP+
Sbjct: 294 LGRGGAHEIKSHPF 307
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 120 bits (304), Expect = 2e-30
Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 45/287 (15%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN----EVNILRSVNHPNIIKL 440
IG+G + VV + DK ALK K +L + + + + E+++L+ +NHPNI++L
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVALK---KIRLETEDEGVPSTAIREISLLKELNHPNIVRL 63
Query: 441 LDEYDTNNELYLVIELIKGGDL---FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
LD + N+LYLV E + DL D+ ++ Q L ++Y H + ++
Sbjct: 64 LDVVHSENKLYLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQ-LLQGIAYCHSHRVL 121
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEILNESG-Y 553
HRD+KP+NLL++ G LK+ DFGLA+ P+ T T Y APEIL S Y
Sbjct: 122 HRDLKPQNLLIDREG----ALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQY 177
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF----------DDILSGQYGFPS---- 599
+D+W+ G I ++ P F D+ + D+LF +D+ G P
Sbjct: 178 STPVDIWSIGCIFAEMVNRRPLFPGDS-EIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPT 236
Query: 600 -PYWD---------DISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
P W ++ E+ +L+S ML +P R SA+ L HP+
Sbjct: 237 FPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF 283
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 119 bits (300), Expect = 2e-30
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 18/261 (6%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
+Y+V +++G+G+F V + D A+K I K + E +L + HPNI
Sbjct: 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNI 60
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAIS-KNVKFSEEDS--KFMTQSLASALSYLHDN 494
+ + ++ + LY+V+E GGDL I + K ED+ ++ Q + + ++H+
Sbjct: 61 VAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQ-MCLGVQHIHEK 119
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC---GTPTYVAPEILNES 551
++HRDIK +N+ + +G +K+GDFG A+ + P C GTP YV PEI
Sbjct: 120 RVLHRDIKSKNIFLTQNG----KVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENM 175
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYG-FPSPYWDDISEEAK 610
Y K D+W+ G ILY L PF N L + G Y PS Y S E +
Sbjct: 176 PYNNKSDIWSLGCILYELCTLKHPF--QANSWKNLILKVCQGSYKPLPSHY----SYELR 229
Query: 611 ELISHMLESNPDLRFSAEDVL 631
LI M + NP R SA +L
Sbjct: 230 SLIKQMFKRNPRSRPSATTIL 250
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 118 bits (298), Expect = 4e-30
Identities = 81/261 (31%), Positives = 128/261 (49%), Gaps = 21/261 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK-KQMIENEVNILRSVNHPNIIKLLDE 443
IG G+F VV +V K A+K ID SK+ + ++ +E +L ++ II+ +
Sbjct: 8 IGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYES 67
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDS-KFMTQSLASALSYLHDNYIVHRD 500
+ +L +V+E + GDL + E+ +F Q L L++LH I+HRD
Sbjct: 68 FLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILL-GLAHLHSKKILHRD 126
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP--MF--TVCGTPTYVAPEILNESGYGVK 556
IK NL ++ + +VK+ GD G+A ++L F T+ GTP Y++PE+ + Y K
Sbjct: 127 IKSLNLFLD-AYDNVKI---GDLGVA-KLLSDNTNFANTIVGTPYYLSPELCEDKPYNEK 181
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYG-FPSPYWDDISEEAKELISH 615
DVWA GV+LY G PF D N+Q L I+ G + Y ++ +LI
Sbjct: 182 SDVWALGVVLYECCTGKHPF--DANNQGALILKIIRGVFPPVSQMYSQQLA----QLIDQ 235
Query: 616 MLESNPDLRFSAEDVLDHPWL 636
L + R +L +P L
Sbjct: 236 CLTKDYRQRPDTFQLLRNPSL 256
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 119 bits (300), Expect = 4e-30
Identities = 74/264 (28%), Positives = 144/264 (54%), Gaps = 12/264 (4%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
++Y+ + IG G V D + A++ ++ + KK++I NE+ ++R +PN
Sbjct: 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPN 78
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
I+ LD Y +EL++V+E + GG L D +++ E + + AL +LH N +
Sbjct: 79 IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC-MDEGQIAAVCRECLQALEFLHSNQV 137
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGY 553
+HRDIK +N+L+ M G +K+ DFG ++ T+ GTP ++APE++ Y
Sbjct: 138 IHRDIKSDNILLGMDGS----VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 193
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELI 613
G K+D+W+ G++ ++ G PP++++ N L+ +G +P + +S ++ +
Sbjct: 194 GPKVDIWSLGIMAIEMIEGEPPYLNE-NPLRALYLIATNGTPELQNP--EKLSAIFRDFL 250
Query: 614 SHMLESNPDLRFSAEDVLDHPWLE 637
+ L+ + + R SA+++L H +L+
Sbjct: 251 NRCLDMDVEKRGSAKELLQHQFLK 274
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 118 bits (297), Expect = 7e-30
Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 33/266 (12%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
+ G V+QV ++ A K + + ++ EV++L+S+ H NI++ L
Sbjct: 20 LTNQGQLIAVKQVELDTSNVLAAEK---------EYEKLQEEVDLLKSLKHVNIVQYLGT 70
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKP 503
+N + + +E + GG + +++ E T+ + ++YLH+N +VHRDIK
Sbjct: 71 CLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKG 130
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRV------------LRPMFTVCGTPTYVAPEILNES 551
N+++ +G ++K+ DFG A+R+ L+ M GTP ++APE++NES
Sbjct: 131 NNVMLMPNG----IIKLIDFGCARRLAWVGLHGTHSNMLKSMH---GTPYWMAPEVINES 183
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD-ISEEAK 610
GYG K D+W+ G ++ + G PP S D L G + P D S A
Sbjct: 184 GYGRKSDIWSIGCTVFEMATGKPPLAS----MDRLAAMFYIGAHRGLMPRLPDSFSAAAI 239
Query: 611 ELISHMLESNPDLRFSAEDVLDHPWL 636
+ ++ L + R SA +L H +L
Sbjct: 240 DFVTSCLTRDQHERPSALQLLRHDFL 265
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 119 bits (300), Expect = 1e-29
Identities = 91/273 (33%), Positives = 145/273 (53%), Gaps = 27/273 (9%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKL 440
++IG G F V V K+ A+KI++K ++L + + E ++L + + I L
Sbjct: 7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNL 66
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHDNYIVHR 499
+ N LYLV++ GGDL +SK + E+ ++F + A+ +H VHR
Sbjct: 67 HYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHR 126
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV-----CGTPTYVAPEILN--ESG 552
DIKP+N+L++ +G H+ ++ DFG R L TV GTP Y++PEIL E G
Sbjct: 127 DIKPDNVLLDKNG-HI---RLADFGSCLR-LLADGTVQSNVAVGTPDYISPEILQAMEDG 181
Query: 553 ---YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQ--YGFPSPYWDDISE 607
YG + D W+ GV +Y +L G PF +++ E + I++ + + FP P D+SE
Sbjct: 182 KGRYGPECDWWSLGVCMYEMLYGETPFYAES--LVETYGKIMNHKEHFQFP-PDVTDVSE 238
Query: 608 EAKELISHMLESNPDLRF---SAEDVLDHPWLE 637
EAK+LI ++ S P+ R +D DHP+ E
Sbjct: 239 EAKDLIRRLICS-PETRLGRNGLQDFKDHPFFE 270
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 117 bits (294), Expect = 2e-29
Identities = 81/259 (31%), Positives = 133/259 (51%), Gaps = 17/259 (6%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE--NEVNILRSVN 433
L + + + IG G F+ V + + ALK + L+ K + E+++L+ +N
Sbjct: 1 LANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN 60
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI---SKNVKFSEEDS--KFMTQSLASAL 488
HPN+IK + +NEL +V+EL GDL I K + E + K+ Q L SAL
Sbjct: 61 HPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQ-LCSAL 119
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ---RVLRPMFTVCGTPTYVAP 545
++H ++HRDIKP N+ + +G V+K+GD GL + ++ GTP Y++P
Sbjct: 120 EHMHSRRVMHRDIKPANVFITATG----VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP 175
Query: 546 EILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDI 605
E ++E+GY K D+W+ G +LY + PF D + L I Q +P D
Sbjct: 176 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKI--EQCDYPPLPSDHY 233
Query: 606 SEEAKELISHMLESNPDLR 624
SEE ++L++ + +P+ R
Sbjct: 234 SEELRQLVNMCINPDPEKR 252
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 117 bits (295), Expect = 2e-29
Identities = 76/271 (28%), Positives = 124/271 (45%), Gaps = 23/271 (8%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVN 433
+ Y + Q IG G + V + D A+K+I KL ++I+ E+++L+
Sbjct: 2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVI---KLEPGDDFEIIQQEISMLKECR 58
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQSLASALSYLH 492
HPNI+ Y ++L++V+E GG L D SE ++ + L+YLH
Sbjct: 59 HPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH 118
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAPEILN 549
+ +HRDIK N+L+ G +K+ DFG++ ++ + + GTP ++APE+
Sbjct: 119 ETGKIHRDIKGANILLTEDGD----VKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAA 174
Query: 550 E---SGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDIS 606
GY K D+WA G+ L PP D + LF L + FP P D
Sbjct: 175 VERKGGYDGKCDIWALGITAIELAELQPPM-FDLHPMRALF---LISKSNFPPPKLKDKE 230
Query: 607 EEAKELISHM---LESNPDLRFSAEDVLDHP 634
+ + + L +P R +A +L HP
Sbjct: 231 KWSPVFHDFIKKCLTKDPKKRPTATKLLQHP 261
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 117 bits (295), Expect = 2e-29
Identities = 76/267 (28%), Positives = 127/267 (47%), Gaps = 20/267 (7%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALKII-----DKSKLLGKKQMIENEVNILRSVNHPN 436
GQ +G G F+ Q D A+K + S+ + + E+ ++ +NHP+
Sbjct: 5 GQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPH 64
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
II++L ++ L +E + GG + +SK F E T+ L LSYLH+N I
Sbjct: 65 IIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQI 124
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFT--------VCGTPTYVAPEIL 548
+HRD+K NLL++ +G L++ DFG A R L T + GT ++APE+L
Sbjct: 125 IHRDVKGANLLIDSTGQR---LRIADFGAAAR-LAAKGTGAGEFQGQLLGTIAFMAPEVL 180
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPFVSDT-NDQDELFDDILSGQYGFPSPYWDDISE 607
YG DVW+ G ++ + PP+ ++ ++ L I S P + +S
Sbjct: 181 RGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIP--EHLSP 238
Query: 608 EAKELISHMLESNPDLRFSAEDVLDHP 634
+++ LE P+ R + ++L HP
Sbjct: 239 GLRDVTLRCLELQPEDRPPSRELLKHP 265
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 119 bits (300), Expect = 2e-29
Identities = 93/306 (30%), Positives = 136/306 (44%), Gaps = 59/306 (19%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKII---DKSKLLGKKQMIENEVNILRSVN 433
RY IG+G + +V K + A+K I + Q E+ ILR
Sbjct: 5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFC---QRTLREIKILRRFK 61
Query: 434 HPNIIKLLD-----EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASAL 488
H NII +LD +++ N++Y+V EL++ DL+ I K S + ++ + L
Sbjct: 62 HENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLI-KTQHLSNDHIQYFLYQILRGL 119
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP-------MFTVCGTPT 541
Y+H ++HRD+KP NLL+ + C LK+ DFGLA R+ P + T
Sbjct: 120 KYIHSANVLHRDLKPSNLLLN-TNCD---LKICDFGLA-RIADPEHDHTGFLTEYVATRW 174
Query: 542 YVAPEI-LNESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQDELFDDILSGQYGFPS 599
Y APEI LN GY ID+W+ G IL +L P F D Q L +L G PS
Sbjct: 175 YRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVL----GTPS 230
Query: 600 -------------------PY-----WDDI----SEEAKELISHMLESNPDLRFSAEDVL 631
P+ W+ + +A +L+ ML NP R + E+ L
Sbjct: 231 QEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEAL 290
Query: 632 DHPWLE 637
HP+LE
Sbjct: 291 AHPYLE 296
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 119 bits (300), Expect = 2e-29
Identities = 87/289 (30%), Positives = 151/289 (52%), Gaps = 24/289 (8%)
Query: 362 TIKRRENLNIPSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ- 420
TI + +L + + + Y V ++IG G F V+ V K A+K++ K +++ +
Sbjct: 31 TINKIRDLRMKA---EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDS 87
Query: 421 -MIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF 479
E +I+ N P +++L + + LY+V+E + GGDL + +S N E+ ++F
Sbjct: 88 AFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS-NYDVPEKWARF 146
Query: 480 MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC-- 537
T + AL +H +HRD+KP+N+L++ SG H LK+ DFG ++ + C
Sbjct: 147 YTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG-H---LKLADFGTCMKMNKEGMVRCDT 202
Query: 538 --GTPTYVAPEILNESG----YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDIL 591
GTP Y++PE+L G YG + D W+ GV LY +L G PF +D+ + I+
Sbjct: 203 AVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS--LVGTYSKIM 260
Query: 592 SGQYGFPSPYWDDISEEAKELISHMLESNPDLRF---SAEDVLDHPWLE 637
+ + P +DIS+EAK LI L ++ ++R E++ H + +
Sbjct: 261 NHKNSLTFPDDNDISKEAKNLICAFL-TDREVRLGRNGVEEIKRHLFFK 308
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 117 bits (294), Expect = 4e-29
Identities = 94/309 (30%), Positives = 131/309 (42%), Gaps = 60/309 (19%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE----NEVNILRS 431
+ ++ + IG+G + V + DK ALK K +L +K+ E+ ILR
Sbjct: 6 VDKFDIIGQIGEGTYGQVYKARDKDTGELVALK---KVRLDNEKEGFPITAIREIKILRQ 62
Query: 432 VNHPNIIKL----------LDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFM 480
+NH NI+ L LD YLV E + DL + S V FSE+ K
Sbjct: 63 LNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSF 121
Query: 481 TQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ----RVLRPMFTV 536
+ L L+Y H +HRDIK N+L+ G +K+ DFGLA+ RP
Sbjct: 122 MKQLLEGLNYCHKKNFLHRDIKCSNILLNNKG----QIKLADFGLARLYNSEESRPYTNK 177
Query: 537 CGTPTYVAPEIL-NESGYGVKIDVWAAGVILYILLCGFPPFVSDTN-DQDELFDDILSGQ 594
T Y PE+L E YG IDVW+ G IL L P F ++ Q EL +
Sbjct: 178 VITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLC--- 234
Query: 595 YGFPSP-YWDDISE--------------------------EAKELISHMLESNPDLRFSA 627
G P P W D+ + A +L+ HML +P R +A
Sbjct: 235 -GSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTA 293
Query: 628 EDVLDHPWL 636
E+ L+ PWL
Sbjct: 294 EEALNSPWL 302
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 118 bits (297), Expect = 4e-29
Identities = 88/269 (32%), Positives = 130/269 (48%), Gaps = 24/269 (8%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLL 441
IG G V +V + ALK+I + ++ I E+ ILR VNHPN++K
Sbjct: 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCH 138
Query: 442 DEYDTNNELYLVIELIKGGDLFDA-ISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
D +D N E+ +++E + GG L I+ ++ + + + S ++YLH +IVHRD
Sbjct: 139 DMFDHNGEIQVLLEFMDGGSLEGTHIADEQFLAD-----VARQILSGIAYLHRRHIVHRD 193
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC----GTPTYVAPEI----LNESG 552
IKP NLL+ + K +K+ DFG++ R+L C GT Y++PE LN
Sbjct: 194 IKPSNLLINSA----KNVKIADFGVS-RILAQTMDPCNSSVGTIAYMSPERINTDLNHGA 248
Query: 553 Y-GVKIDVWAAGV-ILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAK 610
Y G D+W+ GV IL L FP V D L I Q S E +
Sbjct: 249 YDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPA---TASREFR 305
Query: 611 ELISHMLESNPDLRFSAEDVLDHPWLERS 639
IS L+ P R+SA +L HP++ R+
Sbjct: 306 HFISCCLQREPAKRWSAMQLLQHPFILRA 334
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 116 bits (293), Expect = 4e-29
Identities = 81/285 (28%), Positives = 130/285 (45%), Gaps = 52/285 (18%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVN-HPNIIKL 440
Q G + ++ + K ++ + E+ LR ++ HPNI++L
Sbjct: 18 AQSRKTGKYYAIKCMKKHFKSLEQVNNL--------------REIQALRRLSPHPNILRL 63
Query: 441 LD-EYD-TNNELYLVIELIKGGDLFDAISKNVK-FSEEDSK-FMTQSLASALSYLHDNYI 496
++ +D L LV EL+ +L++ I + E+ K +M Q L +L ++H N I
Sbjct: 64 IEVLFDRKTGRLALVFELMDM-NLYELIKGRKRPLPEKRVKSYMYQ-LLKSLDHMHRNGI 121
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL-RPMFTV-CGTPTYVAPEILNESG-Y 553
HRDIKPEN+L+ +LK+ DFG + + +P +T T Y APE L G Y
Sbjct: 122 FHRDIKPENILI-----KDDILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYY 176
Query: 554 GVKIDVWAAGVILYILLCGFPPFV-SDTNDQDELFDDILSG---------------QYGF 597
G K+D+WA G + + +L FP F ++ DQ D+L Y F
Sbjct: 177 GPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNF 236
Query: 598 PS-------PYWDDISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
PS + S E +L+ +L +PD R +A+ L HP+
Sbjct: 237 PSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPY 281
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 117 bits (294), Expect = 6e-29
Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 19/263 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
+++G G+F V K K A+K + K +L M+E V L N P +
Sbjct: 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWEN-PFLT 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T L+ V+E + GGDL I +F + F + L +LH I++
Sbjct: 60 HLYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGYGV 555
RD+K +N++++ G H+K+ DFG+ + + T CGTP Y+APEIL Y
Sbjct: 120 RDLKLDNVMLDRDG-HIKI---ADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTF 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W+ GV+LY +L G PF D D+DELF+ I +P W I++E+K+++
Sbjct: 176 SVDWWSFGVLLYEMLIGQSPFHGD--DEDELFESIRVDTPHYPR--W--ITKESKDILEK 229
Query: 616 MLESNPDLRFSAE-DVLDHPWLE 637
+ E +P R ++ HP+ +
Sbjct: 230 LFERDPTRRLGVVGNIRGHPFFK 252
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 118 bits (297), Expect = 6e-29
Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 21/274 (7%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ--MIENEVNILRSVNH 434
+ Y V ++IG G F V+ V K A+K++ K +++ + E +I+ N
Sbjct: 43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS 102
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN 494
P +++L + + LY+V+E + GGDL + +S N E+ +KF T + AL +H
Sbjct: 103 PWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMS-NYDVPEKWAKFYTAEVVLALDAIHSM 161
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC----GTPTYVAPEILNE 550
++HRD+KP+N+L++ G H LK+ DFG ++ C GTP Y++PE+L
Sbjct: 162 GLIHRDVKPDNMLLDKHG-H---LKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKS 217
Query: 551 SG----YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDIS 606
G YG + D W+ GV L+ +L G PF +D+ + I+ + P +IS
Sbjct: 218 QGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADS--LVGTYSKIMDHKNSLNFPEDVEIS 275
Query: 607 EEAKELISHMLESNPDLRF---SAEDVLDHPWLE 637
+ AK LI L ++ ++R E++ HP+ +
Sbjct: 276 KHAKNLICAFL-TDREVRLGRNGVEEIKQHPFFK 308
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 117 bits (296), Expect = 7e-29
Identities = 90/299 (30%), Positives = 134/299 (44%), Gaps = 49/299 (16%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN------EVNILR 430
RY +G G + V +D A+K KL Q + E+ +L+
Sbjct: 15 DRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIK-----KLSRPFQSAIHAKRTYRELRLLK 69
Query: 431 SVNHPNIIKLLDEY--DTNNE----LYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSL 484
++H N+I LLD + ++ E +YLV L+ G DL + I K K S++ +F+ +
Sbjct: 70 HMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADL-NNIVKCQKLSDDHIQFLVYQI 127
Query: 485 ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVA 544
L Y+H I+HRD+KP N+ V C +K+L DFGLA+ M T Y A
Sbjct: 128 LRGLKYIHSAGIIHRDLKPSNIAVN-EDCELKIL---DFGLARHTDDEMTGYVATRWYRA 183
Query: 545 PEI-LNESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQ------------DELFDDI 590
PEI LN Y +D+W+ G I+ LL G F SD DQ +EL I
Sbjct: 184 PEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKI 243
Query: 591 LS--------GQYGFPSPYWDDI----SEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
S P + ++ + A +L+ ML +PD R +A + L HP+L
Sbjct: 244 SSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLA 302
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 115 bits (289), Expect = 1e-28
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 23/264 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
+GDG F V + +K + A K+ID KS+ + M+E ++IL S +HPNI+KLLD
Sbjct: 13 LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVE--IDILASCDHPNIVKLLDA 70
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
+ N L+++IE GG + DA+ ++ +E + + + AL+YLH+N I+HRD+
Sbjct: 71 FYYENNLWILIEFCAGGAV-DAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDL 129
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLA---QRVLRPMFTVCGTPTYVAPEIL-----NESGY 553
K N+L + G +K+ DFG++ R ++ + GTP ++APE++ + Y
Sbjct: 130 KAGNILFTLDG----DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPY 185
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPY-WDDISEEAKEL 612
K DVW+ G+ L I + P + N L S P W S E K+
Sbjct: 186 DYKADVWSLGITL-IEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRW---SSEFKDF 241
Query: 613 ISHMLESNPDLRFSAEDVLDHPWL 636
+ LE N D R++ +L HP++
Sbjct: 242 LKKCLEKNVDARWTTTQLLQHPFV 265
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 116 bits (291), Expect = 1e-28
Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 19/263 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVNHPNII 438
+++G G+F V K + A+K + K +L M+E V L + HP +
Sbjct: 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSL-AWEHPFLT 59
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
L + T L+ V+E + GGDL I KF + F + L +LH IV+
Sbjct: 60 HLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVY 119
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEILNESGYGV 555
RD+K +N+L++ G H+ K+ DFG+ + + T CGTP Y+APEIL Y
Sbjct: 120 RDLKLDNILLDTDG-HI---KIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNT 175
Query: 556 KIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
+D W+ GV+LY +L G PF +D++ELF I +P W ++ EAK+++
Sbjct: 176 SVDWWSFGVLLYEMLIGQSPF--HGHDEEELFQSIRMDNPCYPR--W--LTREAKDILVK 229
Query: 616 MLESNPDLRFSAE-DVLDHPWLE 637
+ P+ R + D+ HP+
Sbjct: 230 LFVREPERRLGVKGDIRQHPFFR 252
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 114 bits (288), Expect = 1e-28
Identities = 87/268 (32%), Positives = 136/268 (50%), Gaps = 34/268 (12%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMD-CALKII------------DKSKLLGKKQMIENE 425
Y+V + +G G F V +V K+ + ALK I ++ K +G I +E
Sbjct: 2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGD---IVSE 58
Query: 426 VNILR-SVNHPNIIKLLDEYDTNNELYLVIELIKG---GDLFDAI-SKNVKFSEEDSKFM 480
V I++ + HPNI++ + N+ LY+V++LI+G G+ F+++ K +F+EE +
Sbjct: 59 VTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNI 118
Query: 481 TQSLASALSYLH-DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR--PMFTVC 537
+ AL YLH + IVHRD+ P N+ M G KV + DFGLA++ + +V
Sbjct: 119 FVQMVLALRYLHKEKRIVHRDLTPNNI---MLGEDDKVT-ITDFGLAKQKQPESKLTSVV 174
Query: 538 GTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGF 597
GT Y PEI+ YG K DVWA G ILY + PPF S + L I+ Y
Sbjct: 175 GTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYS--TNMLSLATKIVEAVY-- 230
Query: 598 PSPYWDDI-SEEAKELISHMLESNPDLR 624
P + + SE+ ++I+ L + + R
Sbjct: 231 -EPLPEGMYSEDVTDVITSCLTPDAEAR 257
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 114 bits (288), Expect = 2e-28
Identities = 83/285 (29%), Positives = 129/285 (45%), Gaps = 43/285 (15%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G +A V + ++ ALK I G E+++++ + H NI++L D
Sbjct: 8 LGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI 67
Query: 445 DTNNELYLVIELIKGGDL---FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
T N+L LV E + DL D K T L +++ H+N ++HRD+
Sbjct: 68 HTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDL 126
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEILNES-GYGVKI 557
KP+NLL+ G LK+ DFGLA+ P+ T T Y AP++L S Y I
Sbjct: 127 KPQNLLINKRG----ELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSI 182
Query: 558 DVWAAGVILYILLCGFPPFV-SDTNDQDELFDDILSGQYGFPSPY-WDDISEEAK----- 610
D+W+ G I+ ++ G P F ++ DQ I+ G P+ W IS+ +
Sbjct: 183 DIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIM----GTPTESTWPGISQLPEYKPTF 238
Query: 611 --------------------ELISHMLESNPDLRFSAEDVLDHPW 635
+L+ +L+ NP+LR SA D L HPW
Sbjct: 239 PRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPW 283
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 116 bits (293), Expect = 2e-28
Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 62/304 (20%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKLLD 442
IG G F V V + A+K + K+ +L + Q ++ E +IL ++ ++KL
Sbjct: 9 IGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYY 68
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+ + LY V++ I GGD+ + + F E+ ++F L A+ +H +HRDIK
Sbjct: 69 SFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIK 128
Query: 503 PENLLVEMSGCHVKVLKVGDFGLA------------------------------------ 526
P+N+L++ G H+K+ DFGL
Sbjct: 129 PDNILIDRDG-HIKLT---DFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCR 184
Query: 527 ------------QRVLRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFP 574
QR L ++ GTP Y+APE+L +GY D W+ GVILY +L G P
Sbjct: 185 LKPLERRRKRQHQRCL--AHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQP 242
Query: 575 PFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRF---SAEDVL 631
PF++DT + +L +++ + P +S EA +LI L + R A+++
Sbjct: 243 PFLADTPAETQL--KVINWETTLHIPSQAKLSREASDLILR-LCCGAEDRLGKNGADEIK 299
Query: 632 DHPW 635
HP+
Sbjct: 300 AHPF 303
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 115 bits (289), Expect = 3e-28
Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 29/278 (10%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPN 436
+ + ++IG G F V V KH + A+KI++K ++L + + E N+L + +
Sbjct: 3 FEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQW 62
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISK-NVKFSEEDSKFMTQSLASALSYLHDNY 495
I L + N LYLV++ GGDL +SK + E+ ++F + A+ +H +
Sbjct: 63 ITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLH 122
Query: 496 IVHRDIKPENLLVEMSGCHVKV------LKVGDFGLAQRVLRPMFTVCGTPTYVAPEILN 549
VHRDIKP+N+L++M+G H+++ LK+ G Q + GTP Y++PEIL
Sbjct: 123 YVHRDIKPDNVLLDMNG-HIRLADFGSCLKMNQDGTVQSSV-----AVGTPDYISPEILQ 176
Query: 550 --ESG---YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQ--YGFPSPYW 602
E G YG + D W+ GV +Y +L G PF +++ E + I++ + + FPS +
Sbjct: 177 AMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAES--LVETYGKIMNHEERFQFPS-HI 233
Query: 603 DDISEEAKELISHMLESNPDLRFSA---EDVLDHPWLE 637
D+SEEAK+LI ++ S + R ED H + E
Sbjct: 234 TDVSEEAKDLIQRLICSR-ERRLGQNGIEDFKKHAFFE 270
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 113 bits (285), Expect = 3e-28
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 15/213 (7%)
Query: 382 GQIIGDGNFAVVRQ----VYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
G+ +G+G F V + + + A+K + + +++ E +I++ ++HPNI
Sbjct: 4 GKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNI 63
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
++LL LY+V E + GGDL D + K + +D M +A + YL
Sbjct: 64 VRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNF 123
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYV-----APEILNES 551
VHRD+ N LV + V+K+ DFGL++ + + + APE L +
Sbjct: 124 VHRDLAARNCLVTENL----VVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMAPESLKDG 179
Query: 552 GYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
+ K DVW+ GV+L+ I G P+ +N++
Sbjct: 180 KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE 212
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 113 bits (284), Expect = 5e-28
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 413 SKLLGKKQM-------IENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDA 465
KL +K + IE V+ L ++PN IKL T L+++ IK GDLFD
Sbjct: 41 QKLFVQKIIKAKNFNAIEPMVHQLMK-DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDL 99
Query: 466 ISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGL 525
+ K K SE + K + + L AL+ LH + I+H DIK EN+L + + + + D+GL
Sbjct: 100 LKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLC---DYGL 156
Query: 526 AQRVLRPMFTVC--GTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQ 583
+ + P C GT Y +PE + Y V D WA GV+ Y LL G PF D+
Sbjct: 157 CKIIGTPS---CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFK---EDE 210
Query: 584 DELFD-DILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSA-EDVLDHPWL 636
DE D + L + P+ ++S+ A + + ML+ N + R + +++ HP+L
Sbjct: 211 DEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFL 265
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 112 bits (282), Expect = 2e-27
Identities = 84/270 (31%), Positives = 129/270 (47%), Gaps = 25/270 (9%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK---- 439
+G+G V + K+ M ALK I ++ I E+ I +S P I+K
Sbjct: 8 RLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGA 67
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVK-----FSEEDSKFMTQSLASALSYLHDN 494
LDE ++ + + +E +GG L D+I K VK E+ + +S+ LSYLH
Sbjct: 68 FLDESSSS--IGIAMEYCEGGSL-DSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR 124
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA-QRVLRPMFTVCGTPTYVAPEILNESGY 553
I+HRDIKP N+L+ G +K+ DFG++ + V T GT Y+APE + Y
Sbjct: 125 KIIHRDIKPSNILLTRKG----QVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPY 180
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD-------IS 606
+ DVW+ G+ L + PF + + ++LS P+P D S
Sbjct: 181 SITSDVWSLGLTLLEVAQNRFPFPPE-GEPPLGPIELLSYIVNMPNPELKDEPGNGIKWS 239
Query: 607 EEAKELISHMLESNPDLRFSAEDVLDHPWL 636
EE K+ I LE +P R + D+L+HPW+
Sbjct: 240 EEFKDFIKQCLEKDPTRRPTPWDMLEHPWI 269
>gnl|CDD|214711 smart00537, DCX, Domain in the Doublecortin (DCX) gene product.
Tandemly-repeated domain in doublin, the Doublecortin
gene product. Proposed to bind tubulin. Doublecortin
(DCX) is mutated in human X-linked neuronal migration
defects.
Length = 89
Score = 105 bits (264), Expect = 3e-27
Identities = 47/89 (52%), Positives = 66/89 (74%), Gaps = 3/89 (3%)
Query: 98 RRAKRIRFLCNGDKFFKGVVMAVGPERYRSFDSLLEELTRALAENINLPSGVRILFTMDG 157
+ KRIRF NGD+FFKGV + V +R++SF++LL++LT ++LP GVR L+T+DG
Sbjct: 3 VKPKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTE--VVKLDLPHGVRKLYTLDG 60
Query: 158 QKVTNIDELEDGKFYICSSSGDQFKKVDY 186
+KVT++DELEDG Y+ S + FKKVDY
Sbjct: 61 KKVTSLDELEDGGSYVA-SGTEAFKKVDY 88
Score = 76.5 bits (189), Expect = 3e-17
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 222 VRPRIIIVIRNGIRPRKVVRALLNKRNAPSLDQCFSTITDIVKLDTG-AVRKVYTLNGNQ 280
V+P+ I RNG R K VR ++N++ S + +T++VKLD VRK+YTL+G +
Sbjct: 3 VKPKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKK 62
Query: 281 LARLSDFFKSDDVFFAYGSERVLP 304
+ L + + A G+E
Sbjct: 63 VTSLDELE-DGGSYVASGTEAFKK 85
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 112 bits (281), Expect = 3e-27
Identities = 90/307 (29%), Positives = 129/307 (42%), Gaps = 59/307 (19%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ----MIENEVNILRSVN 433
+Y IG G F V + K ALK + + +K+ E+ IL+ +
Sbjct: 13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKV---LMENEKEGFPITALREIKILQLLK 69
Query: 434 HPNIIKLLDEYDT-----NN---ELYLVIELIKGGDLFDAIS-KNVKFSEEDSKFMTQSL 484
H N++ L++ T N YLV E + DL +S KNVKF+ + K + + L
Sbjct: 70 HENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKML 128
Query: 485 ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP-------MFTVC 537
+ L Y+H N I+HRD+K N+L+ G +LK+ DFGLA+
Sbjct: 129 LNGLYYIHRNKILHRDMKAANILITKDG----ILKLADFGLARAFSLSKNSKPNRYTNRV 184
Query: 538 GTPTYVAPEI-LNESGYGVKIDVWAAGVI---------------------LYILLCG-FP 574
T Y PE+ L E YG ID+W AG I L LCG
Sbjct: 185 VTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSIT 244
Query: 575 PFVSDTNDQDELFD--DILSGQYGFP----SPYWDDISEEAKELISHMLESNPDLRFSAE 628
P V D+ ELF ++ GQ PY D A +LI +L +P R A+
Sbjct: 245 PEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKD--PHALDLIDKLLVLDPAKRIDAD 302
Query: 629 DVLDHPW 635
L+H +
Sbjct: 303 TALNHDF 309
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 111 bits (278), Expect = 5e-27
Identities = 70/259 (27%), Positives = 144/259 (55%), Gaps = 14/259 (5%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
IG+G+ +V K A+K +D K +++++ NEV I+R H N++++ + Y
Sbjct: 28 IGEGSTGIVCIATVKSSGKLVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHENVVEMYNSY 86
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPE 504
+EL++V+E ++GG L D ++ + + +EE + ++ ALS LH ++HRDIK +
Sbjct: 87 LVGDELWVVMEFLEGGALTDIVT-HTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSD 145
Query: 505 NLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEILNESGYGVKIDVWA 561
++L+ G +K+ DFG +V + + ++ GTP ++APE+++ YG ++D+W+
Sbjct: 146 SILLTHDG----RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWS 201
Query: 562 AGVILYILLCGFPPFVSDTNDQD-ELFDDILSGQYGFPSPYWDDISEEAKELISHMLESN 620
G+++ ++ G PP+ ++ + ++ D L + +S K + +L +
Sbjct: 202 LGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKL----KNLHKVSPSLKGFLDRLLVRD 257
Query: 621 PDLRFSAEDVLDHPWLERS 639
P R +A ++L HP+L ++
Sbjct: 258 PAQRATAAELLKHPFLAKA 276
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 108 bits (272), Expect = 1e-26
Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 36/275 (13%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLG----KKQMIENEVNILRSVNH 434
Y +++G G++ V V +H+ D +I K L +++ E E +L + H
Sbjct: 2 YCFVRVVGKGSYGEVSLV--RHRT-DGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKH 58
Query: 435 PNIIKLLDEYDTNN-ELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQS--------LA 485
PNI+ + ++ + LY+V+ +GGDL+ K E+ K + ++ +A
Sbjct: 59 PNIVAYRESWEGEDGLLYIVMGFCEGGDLYH------KLKEQKGKLLPENQVVEWFVQIA 112
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF----TVCGTPT 541
AL YLH+ +I+HRD+K +N+ + + ++KVGD G+A RVL T+ GTP
Sbjct: 113 MALQYLHEKHILHRDLKTQNVFLTRT----NIIKVGDLGIA-RVLENQCDMASTLIGTPY 167
Query: 542 YVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPY 601
Y++PE+ + Y K DVWA G +Y + F + D + L I+ G+ P
Sbjct: 168 YMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAF--NAKDMNSLVYRIIEGKL---PPM 222
Query: 602 WDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
D S E ELI+ ML P+ R S + +L P++
Sbjct: 223 PKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI 257
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 110 bits (277), Expect = 1e-26
Identities = 86/305 (28%), Positives = 129/305 (42%), Gaps = 52/305 (17%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMD--CALK----IIDKSKLLGKKQMIENEVNILRS 431
RY + + +G G + +V + + A+K + K K+L K+ + E+ +LR
Sbjct: 1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK-KILAKRAL--RELKLLRH 57
Query: 432 V-NHPNIIKLLD----EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLAS 486
H NI L D NELYL EL++ DL I ++ + +
Sbjct: 58 FRGHKNITCLYDMDIVFPGNFNELYLYEELMEA-DLHQIIRSGQPLTDAHFQSFIYQILC 116
Query: 487 ALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT----- 541
L Y+H ++HRD+KP NLLV LK+ DFGLA+ G T
Sbjct: 117 GLKYIHSANVLHRDLKPGNLLVNADCE----LKICDFGLARGFSENPGENAGFMTEYVAT 172
Query: 542 --YVAPEI-LNESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQ-DELF-------DD 589
Y APEI L+ Y IDVW+ G IL LL P F D DQ +++ ++
Sbjct: 173 RWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEE 232
Query: 590 ILSG-------QYGFPSPY---------WDDISEEAKELISHMLESNPDLRFSAEDVLDH 633
LS Y P + + + A +L+ +L +P R S E+ L+H
Sbjct: 233 TLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH 292
Query: 634 PWLER 638
P+L
Sbjct: 293 PYLAI 297
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 110 bits (276), Expect = 1e-26
Identities = 84/275 (30%), Positives = 145/275 (52%), Gaps = 21/275 (7%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNH 434
+ + + ++IG G F V V K+ D A+KI++K ++L + + E ++L + ++
Sbjct: 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDN 60
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISK-NVKFSEEDSKFMTQSLASALSYLHD 493
I L + N LYLV++ GGDL +SK + E+ ++F + A+ +H
Sbjct: 61 QWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ 120
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR----PMFTVCGTPTYVAPEILN 549
+ VHRDIKP+N+L++M+G H+ ++ DFG +++ GTP Y++PEIL
Sbjct: 121 LHYVHRDIKPDNILMDMNG-HI---RLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQ 176
Query: 550 --ESG---YGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYW-D 603
E G YG + D W+ GV +Y +L G PF +++ E + I++ + F P
Sbjct: 177 AMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES--LVETYGKIMNHKERFQFPAQVT 234
Query: 604 DISEEAKELISHMLESNPDL--RFSAEDVLDHPWL 636
D+SE+AK+LI ++ S + ED HP+
Sbjct: 235 DVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFF 269
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 109 bits (275), Expect = 2e-26
Identities = 85/290 (29%), Positives = 133/290 (45%), Gaps = 49/290 (16%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE----NEVNILRSVNHPNIIK 439
IG+G + +V + D ALK K ++ ++ I E+ +L ++ HPNI++
Sbjct: 14 RIGEGTYGIVYRARDTTSGEIVALK---KVRMDNERDGIPISSLREITLLLNLRHPNIVE 70
Query: 440 LLDEYDTN--NELYLVIELIKG--GDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY 495
L + + ++LV+E + L D + FSE K + L L YLH+N+
Sbjct: 71 LKEVVVGKHLDSIFLVMEYCEQDLASLLDNMPT--PFSESQVKCLMLQLLRGLQYLHENF 128
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQR---VLRPMFTVCGTPTYVAPEIL-NES 551
I+HRD+K NLL+ GC LK+ DFGLA+ +PM T Y APE+L +
Sbjct: 129 IIHRDLKVSNLLLTDKGC----LKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCT 184
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTN-DQDELFDDILS----------------GQ 594
Y ID+WA G IL LL P + +Q +L +L G+
Sbjct: 185 TYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGK 244
Query: 595 YGFPS-PY--------WDDISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
+ P PY W +SE L++ +L +P R +AE+ L+ +
Sbjct: 245 FTLPKQPYNNLKHKFPW--LSEAGLRLLNFLLMYDPKKRATAEEALESSY 292
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 109 bits (273), Expect = 2e-26
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 21/265 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPNIIKL 440
+++G G F V + A K ++K ++ +K M NE IL VN ++ L
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSL 65
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
Y+T + L LV+ L+ GGDL I N F EE + F + L LH IV+
Sbjct: 66 AYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVY 125
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNESGYGVK 556
RD+KPEN+L++ G H+++ D GLA + + GT Y+APE++ Y
Sbjct: 126 RDLKPENILLDDYG-HIRI---SDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFS 181
Query: 557 IDVWAAGVILYILLCGFPPFVS--DTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
D W G ++Y ++ G PF + ++E+ + Q Y + SE A+ +
Sbjct: 182 PDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQ----EEYSEKFSEAARSICR 237
Query: 615 HMLESNPDLRF-----SAEDVLDHP 634
+L +P R AE+V HP
Sbjct: 238 QLLTKDPGFRLGCRGEGAEEVKAHP 262
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 108 bits (272), Expect = 2e-26
Identities = 77/259 (29%), Positives = 123/259 (47%), Gaps = 17/259 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGK--KQMIENEVNILRSVNHPNIIKLLD 442
+G G F V V K+ A K +DK +L K ++M E IL VN P I+ L
Sbjct: 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAY 60
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK--FMTQSLASALSYLHDNYIVHRD 500
+++ L LV+ L+ GGDL I + E + + + + +LH IV+RD
Sbjct: 61 AFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRD 120
Query: 501 IKPENLLVEMSG-CHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNESGYGVKI 557
+KPEN+L++ G C ++ D GLA + + + GT Y+APEIL E Y +
Sbjct: 121 MKPENVLLDDQGNC-----RLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPV 175
Query: 558 DVWAAGVILYILLCGFPPF--VSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISH 615
D +A G +Y ++ G PF + ++EL L + F + +EE+K++
Sbjct: 176 DWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEH---QNFTEESKDICRL 232
Query: 616 MLESNPDLRFSAEDVLDHP 634
L P+ R + + D P
Sbjct: 233 FLAKKPEDRLGSREKNDDP 251
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 108 bits (271), Expect = 2e-26
Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 30/274 (10%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALK-----IIDKSKLLGKKQMIE---NEVNILRSVN 433
G +IG G+F V + A+K + S K+ M++ E+ +L+ +
Sbjct: 5 GALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQ 64
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHD 493
H NI++ L + L + +E + GG + ++ F E + + + L+YLH+
Sbjct: 65 HENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHN 124
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV-----------LRPMFTVCGTPTY 542
I+HRDIK N+LV+ G +K+ DFG+++++ RP G+ +
Sbjct: 125 RGIIHRDIKGANILVDNKG----GIKISDFGISKKLEANSLSTKTNGARPSLQ--GSVFW 178
Query: 543 VAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYW 602
+APE++ ++ Y K D+W+ G ++ +L G PF D +F G+ P
Sbjct: 179 MAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPF-PDCTQLQAIFK---IGENASPEIP- 233
Query: 603 DDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
+IS EA + + E + + R +A ++L HP+L
Sbjct: 234 SNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL 267
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 107 bits (270), Expect = 4e-26
Identities = 87/282 (30%), Positives = 132/282 (46%), Gaps = 37/282 (13%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
IG+G + VV + +K ALK I ++ G E+++L+ +NHPNI+KLLD
Sbjct: 8 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDV 67
Query: 444 YDTNNELYLVIELIKGGDL--FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
T N+LYLV E + DL F S K L L++ H + ++HRD+
Sbjct: 68 IHTENKLYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDL 126
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEILNESG-YGVKI 557
KP+NLL+ G +K+ DFGLA+ P+ T T Y APEIL Y +
Sbjct: 127 KPQNLLINTEG----AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAV 182
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELF----------DDILSGQYGFPS-----PYW 602
D+W+ G I ++ F D+ + D+LF + + G P P W
Sbjct: 183 DIWSLGCIFAEMVTRRALFPGDS-EIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKW 241
Query: 603 D---------DISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
+ E+ ++L+S ML +P+ R SA+ L HP+
Sbjct: 242 ARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPF 283
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 109 bits (274), Expect = 4e-26
Identities = 87/302 (28%), Positives = 128/302 (42%), Gaps = 49/302 (16%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKS---KLLGKKQMIENEVNILRSVNH 434
RY + IG G + VV D A+K I + L K+ + E+ ILR H
Sbjct: 6 RYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTL--RELKILRHFKH 63
Query: 435 PNIIKLLDEYDTNNEL----YLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSY 490
NII + D Y+V++L+ DL I + +EE ++ L L Y
Sbjct: 64 DNIIAIRDILRPPGADFKDVYVVMDLM-ESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKY 122
Query: 491 LHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL-------RPMFTVCGTPTYV 543
+H ++HRD+KP NLLV C L++GDFG+A+ + M T Y
Sbjct: 123 IHSANVIHRDLKPSNLLVN-EDCE---LRIGDFGMARGLSSSPTEHKYFMTEYVATRWYR 178
Query: 544 APEILNESG-YGVKIDVWAAGVI---------------------LYILLCGFPPF-VSDT 580
APE+L Y ID+W+ G I L + + G P V +
Sbjct: 179 APELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNR 238
Query: 581 NDQDELFDDILSGQYGFPSPYWDDI----SEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
D + I + P P W I S EA +L+S ML+ +P+ R + E L HP+L
Sbjct: 239 IGSDRVRKYIQNLPRKQPVP-WSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFL 297
Query: 637 ER 638
+
Sbjct: 298 AQ 299
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 107 bits (269), Expect = 5e-26
Identities = 65/272 (23%), Positives = 129/272 (47%), Gaps = 24/272 (8%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALKII---------DKSKLLGKKQMIENEVNILRSV 432
G++IG G + V + A+K + S+ + + +E+ L+ +
Sbjct: 6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDL 65
Query: 433 NHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH 492
+H NI++ L T L + +E + GG + + +F E+ +F T+ + L+YLH
Sbjct: 66 DHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLH 125
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-----PMFTVCGTPTYVAPEI 547
I+HRD+K +NLLV+ G + K+ DFG++++ ++ G+ ++APE+
Sbjct: 126 SKGILHRDLKADNLLVDADG----ICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEV 181
Query: 548 LNES--GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQD--ELFDDILSGQYGFPSPYWD 603
++ GY K+D+W+ G ++ + G P+ + +L + P
Sbjct: 182 IHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGN--KRSAPPIPPDVSM 239
Query: 604 DISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
++S A + ++ NPD R +A ++L HP+
Sbjct: 240 NLSPVALDFLNACFTINPDNRPTARELLQHPF 271
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 107 bits (268), Expect = 6e-26
Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 25/263 (9%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
IG G+F V + D A+KIID + + + I+ E+ +L + P I + Y
Sbjct: 12 IGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSY 71
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPE 504
+L++++E + GG D + K E + + + L YLH +HRDIK
Sbjct: 72 LKGTKLWIIMEYLGGGSALDLL-KPGPLEETYIATILREILKGLDYLHSERKIHRDIKAA 130
Query: 505 NLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAPEILNESGYGVKIDVWA 561
N+L+ G +K+ DFG+A ++ T GTP ++APE++ +S Y K D+W+
Sbjct: 131 NVLLSEQG----DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWS 186
Query: 562 AGVILYILLCGFPPFVSDTNDQDELF------DDILSGQYGFPSPYWDDISEEAKELISH 615
G+ L G PP SD + LF L GQY P KE +
Sbjct: 187 LGITAIELAKGEPPN-SDLHPMRVLFLIPKNSPPTLEGQYSKP----------FKEFVEA 235
Query: 616 MLESNPDLRFSAEDVLDHPWLER 638
L +P R +A+++L H ++ R
Sbjct: 236 CLNKDPRFRPTAKELLKHKFITR 258
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 108 bits (271), Expect = 7e-26
Identities = 82/309 (26%), Positives = 132/309 (42%), Gaps = 59/309 (19%)
Query: 385 IGDGNFAVVRQVYDKHKDM--DCALKII--DKSKLLGKKQMIENEVNILRSVNHPNIIKL 440
IG G + V + K+ + A+K DK + G Q E+ +LR + H N++ L
Sbjct: 8 IGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSL 67
Query: 441 LDEY--DTNNELYLVIELIKGGDLFDAI-----SKNVKFSEEDSKFMTQSLASALSYLHD 493
++ + + +YL+ + + DL+ I +K V K + + + + YLH
Sbjct: 68 VEVFLEHADKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS 126
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA---QRVLRPMFT---VCGTPTYVAPEI 547
N+++HRD+KP N+LV G V+K+GD GLA L+P+ V T Y APE+
Sbjct: 127 NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPEL 186
Query: 548 LNESG-YGVKIDVWAAGVILYILLC------------------------------GFP-- 574
L + Y ID+WA G I LL G P
Sbjct: 187 LLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTE 246
Query: 575 ---PFVSDTNDQDELFDDILSGQYGFPS-PYWDDI----SEEAKELISHMLESNPDLRFS 626
P + + D L D + Y S W + + +L+ +LE +P R +
Sbjct: 247 KDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRIT 306
Query: 627 AEDVLDHPW 635
AE+ L+HP+
Sbjct: 307 AEEALEHPY 315
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 107 bits (267), Expect = 1e-25
Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 23/266 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
+GDG F V + +K A K+I+ KS+ + M+E + IL + NHP I+KLL
Sbjct: 20 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVE--IEILATCNHPYIVKLLGA 77
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
+ + +L+++IE GG + DAI + +E + + + + AL YLH I+HRD+
Sbjct: 78 FYWDGKLWIMIEFCPGGAV-DAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDL 136
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQ---RVLRPMFTVCGTPTYVAPEI-----LNESGY 553
K N+L+ + G +K+ DFG++ + L+ + GTP ++APE+ + ++ Y
Sbjct: 137 KAGNVLLTLDG----DIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPY 192
Query: 554 GVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPY-WDDISEEAKEL 612
K D+W+ G+ L I + P + N L S P W S E ++
Sbjct: 193 DYKADIWSLGITL-IEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKW---SMEFRDF 248
Query: 613 ISHMLESNPDLRFSAEDVLDHPWLER 638
+ L+ +P+ R SA +L+HP++
Sbjct: 249 LKTALDKHPETRPSAAQLLEHPFVSS 274
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 107 bits (268), Expect = 2e-25
Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 64/314 (20%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALK-IIDKSKLLGKKQMIENEVNILRSVNH 434
L+ Y + +G+G F V + ALK I+ ++ G E+ IL+ + H
Sbjct: 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKH 66
Query: 435 PNIIKLLD--------EYDTNNELYLVIELIKGGDLFDAISK-NVKFSEEDSKFMTQSLA 485
PN++ L+D +Y+V + DL + +VK +E K L
Sbjct: 67 PNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLL 125
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPT- 541
++YLH+N+I+HRDIK N+L++ G +LK+ DFGLA R P G
Sbjct: 126 EGINYLHENHILHRDIKAANILIDNQG----ILKIADFGLA-RPYDGPPPNPKGGGGGGT 180
Query: 542 -----------YVAPE-ILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTN-DQDELFD 588
Y PE +L E Y +D+W G + + P ++ DQ L
Sbjct: 181 RKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIF 240
Query: 589 DILSGQYGFPS----PYWDDI-----------------------SEEAKELISHMLESNP 621
+ G P+ P W + E +L+S +L +P
Sbjct: 241 KLC----GTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDP 296
Query: 622 DLRFSAEDVLDHPW 635
R +A D L+HP+
Sbjct: 297 YKRLTASDALEHPY 310
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 105 bits (264), Expect = 2e-25
Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 15/256 (5%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
IG G+F V + D A+KIID + + + I+ E+ +L + P + K Y
Sbjct: 12 IGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 71
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPE 504
+L++++E + GG D + F E M + + L YLH +HRDIK
Sbjct: 72 LKGTKLWIIMEYLGGGSALDLLRAG-PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAA 130
Query: 505 NLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAPEILNESGYGVKIDVWA 561
N+L+ G +K+ DFG+A ++ T GTP ++APE++ +S Y K D+W+
Sbjct: 131 NVLLSEQG----DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWS 186
Query: 562 AGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYW-DDISEEAKELISHMLESN 620
G+ L G PP SD + LF P + S+ KE I L +
Sbjct: 187 LGITAIELAKGEPP-NSDMHPMRVLFL-----IPKNNPPTLTGEFSKPFKEFIDACLNKD 240
Query: 621 PDLRFSAEDVLDHPWL 636
P R +A+++L H ++
Sbjct: 241 PSFRPTAKELLKHKFI 256
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 107 bits (270), Expect = 2e-25
Identities = 96/292 (32%), Positives = 124/292 (42%), Gaps = 46/292 (15%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDK--SKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
IG G F VV V D ALK + L+ K++ E+ +L H N++ LD
Sbjct: 8 IGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFR-ELKMLCFFKHDNVLSALD 66
Query: 443 -----EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
D E+Y+V EL++ DL I S + K + L YLH I+
Sbjct: 67 ILQPPHIDPFEEIYVVTELMQS-DLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGIL 125
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP-----MFTVCGTPTYVAPEILNESG 552
HRDIKP NLLV S C VLK+ DFGLA RV P M T Y APEIL S
Sbjct: 126 HRDIKPGNLLVN-SNC---VLKICDFGLA-RVEEPDESKHMTQEVVTQYYRAPEILMGSR 180
Query: 553 -YGVKIDVWAAGVI---------------------LYILLCGFPPFVSDTNDQDELFDDI 590
Y +D+W+ G I L L G P + + + I
Sbjct: 181 HYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHI 240
Query: 591 LSGQY---GFPSPYW--DDISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
L G + P Y + EA L+ ML +PD R SA D L HP+L+
Sbjct: 241 LRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLD 292
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 105 bits (264), Expect = 2e-25
Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 19/269 (7%)
Query: 375 LLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNH 434
L QR ++IG G + V + ALKII+ I+ EV +L +
Sbjct: 2 LYQRL---ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQ 58
Query: 435 ---PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYL 491
PNI K Y L++++E +GG + + K +E+ + + + AL Y+
Sbjct: 59 SQPPNITKYYGSYLKGPRLWIIMEYAEGGSV-RTLMKAGPIAEKYISVIIREVLVALKYI 117
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA---QRVLRPMFTVCGTPTYVAPEIL 548
H ++HRDIK N+LV +G +K+ DFG+A + T GTP ++APE++
Sbjct: 118 HKVGVIHRDIKAANILVTNTG----NVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVI 173
Query: 549 NE-SGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISE 607
E Y K D+W+ G+ +Y + G PP+ +D D +L + P + S+
Sbjct: 174 TEGKYYDTKADIWSLGITIYEMATGNPPY----SDVDAFRAMMLIPKSKPPRLEDNGYSK 229
Query: 608 EAKELISHMLESNPDLRFSAEDVLDHPWL 636
+E ++ L+ P R SAE++L W+
Sbjct: 230 LLREFVAACLDEEPKERLSAEELLKSKWI 258
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 109 bits (273), Expect = 3e-25
Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 23/241 (9%)
Query: 404 DCALKIIDKSKLLGKKQMI---ENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGG 460
D K++ K +L ++ +E++ L + +H I+K D++ ++++L L++E GG
Sbjct: 91 DPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGG 150
Query: 461 DLFDAISKNVK----FSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVK 516
DL I + +K F E + + + AL +H ++HRD+K N+ + +G
Sbjct: 151 DLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTG---- 206
Query: 517 VLKVGDFGLAQRV-----LRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLC 571
++K+GDFG +++ L + CGTP Y+APE+ Y K D+W+ GVILY LL
Sbjct: 207 IIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLT 266
Query: 572 GFPPFVSDTNDQDELFDDILSGQYG-FPSPYWDDISEEAKELISHMLESNPDLRFSAEDV 630
PF + Q E+ +L G+Y FP P +S K L+ +L NP LR + + +
Sbjct: 267 LHRPFKGPS--QREIMQQVLYGKYDPFPCP----VSSGMKALLDPLLSKNPALRPTTQQL 320
Query: 631 L 631
L
Sbjct: 321 L 321
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 104 bits (262), Expect = 6e-25
Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 38/284 (13%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
IG+G + VV + +K A+K I +S+ G E+++L+ + HPNI+ L D
Sbjct: 8 IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDV 67
Query: 444 YDTNNELYLVIELIKGGDL---FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ LYL+ E + DL D++ K E K + + + H ++HRD
Sbjct: 68 LMQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRD 126
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEILNESG-YGVK 556
+KP+NLL++ G +K+ DFGLA+ P+ T Y APE+L S Y
Sbjct: 127 LKPQNLLIDNKGV----IKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTP 182
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELF----------DDILSGQYGFPS-----PY 601
+D+W+ G I + P F D+ + D+LF +D+ G P P
Sbjct: 183 VDIWSIGTIFAEMATKKPLFHGDS-EIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPK 241
Query: 602 WD---------DISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
W ++ E+ +L+ ML +P R SA+ L+HP+
Sbjct: 242 WKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF 285
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 108 bits (271), Expect = 6e-25
Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 43/284 (15%)
Query: 377 QRYSVGQIIGDGNFAVV---RQVYDKHKDMDCALKIIDKSKLL-GKKQMIENEVNILRSV 432
++Y + +++G G V ++V D A+K++D + K + EV L +
Sbjct: 32 KKYWISRVLGSGATGTVLCAKRVSDGEP---FAVKVVDMEGMSEADKNRAQAEVCCLLNC 88
Query: 433 NHPNIIKLLDEY---DTNNE-----LYLVIELIKGGDLFDAISKNVK----FSEEDSKFM 480
+ +I+K +++ D N + LV++ GDL I K F E ++ +
Sbjct: 89 DFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLL 148
Query: 481 TQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF------ 534
+ A+ ++H +++HRDIK N+L+ C ++K+GDFG ++ M+
Sbjct: 149 FIQVLLAVHHVHSKHMIHRDIKSANILL----CSNGLVKLGDFGFSK-----MYAATVSD 199
Query: 535 ----TVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDI 590
T CGTP YVAPEI Y K D+++ GV+LY LL PF D + +E+
Sbjct: 200 DVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPF--DGENMEEVMHKT 257
Query: 591 LSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDVLDHP 634
L+G+Y P IS E +E+++ +L S+P R S+ +L+ P
Sbjct: 258 LAGRY---DPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMP 298
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 103 bits (259), Expect = 8e-25
Identities = 75/268 (27%), Positives = 133/268 (49%), Gaps = 21/268 (7%)
Query: 382 GQIIGDGNFAVVRQVYDKHKDMDCALKII----DKSKLLGKKQMIENEVNILRSVNHPNI 437
G+++G G F V YD + A K + + + + +E E+ +L+++ H I
Sbjct: 7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERI 66
Query: 438 IKLLDEYDTNNELYLVI--ELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY 495
++ E L I E + GG + D + +E ++ T+ + +SYLH N
Sbjct: 67 VQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNM 126
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL------RPMFTVCGTPTYVAPEILN 549
IVHRDIK N+L + +G +K+GDFG ++R+ + +V GTP +++PE+++
Sbjct: 127 IVHRDIKGANILRDSAGN----VKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVIS 182
Query: 550 ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEA 609
GYG K DVW+ G + +L PP+ ++ +F ++ Q P ISE A
Sbjct: 183 GEGYGRKADVWSLGCTVVEMLTEKPPW-AEYEAMAAIFK--IATQPTNP-QLPSHISEHA 238
Query: 610 KELISHMLESNPDLRFSAEDVLDHPWLE 637
++ + + R SAE++L HP+ +
Sbjct: 239 RDFLGCIF-VEARHRPSAEELLRHPFAQ 265
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 102 bits (256), Expect = 2e-24
Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 23/271 (8%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKL--LGKKQMIEN--EVNILRSVN 433
RY + Q +G G+F V V DK + LK++ + + L + ++ E +L ++
Sbjct: 1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLD 60
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISK----NVKFSEEDSKFMTQSLASALS 489
HP I+K + + ++ E +G DL + + SE L +
Sbjct: 61 HPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVH 120
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCGTPTYVAPE 546
Y+H I+HRD+K +N+ ++ + +LK+GDFG+++ ++ T GTP Y++PE
Sbjct: 121 YMHQRRILHRDLKAKNIFLKNN-----LLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPE 175
Query: 547 ILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD-I 605
L GY K D+W+ G ILY + C F F ++ P+P +
Sbjct: 176 ALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN------FLSVVLRIVEGPTPSLPETY 229
Query: 606 SEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
S + ++ ML +P LR SA ++L +P++
Sbjct: 230 SRQLNSIMQSMLNKDPSLRPSAAEILRNPFI 260
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 102 bits (256), Expect = 3e-24
Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 21/267 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPNIIKL 440
+++G G F V + A K ++K ++ +K M NE IL VN ++ L
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNL 65
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
Y+T + L LV+ ++ GGDL I N F EE + F + L LH V+
Sbjct: 66 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVY 125
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR--PMFTVCGTPTYVAPEILNESGYGVK 556
RD+KPEN+L++ G H+++ D GLA ++ + GT Y+APE+LN Y +
Sbjct: 126 RDLKPENILLDDYG-HIRI---SDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLS 181
Query: 557 IDVWAAGVILYILLCGFPPFVS--DTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
D W G ++Y ++ G PF + ++E+ +L + + + + SEEAK +
Sbjct: 182 PDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKF----SEEAKSICK 237
Query: 615 HMLESNPDLRF-----SAEDVLDHPWL 636
+L +P R A +V HP+
Sbjct: 238 MLLTKDPKQRLGCQEEGAGEVKRHPFF 264
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 102 bits (256), Expect = 3e-24
Identities = 89/289 (30%), Positives = 128/289 (44%), Gaps = 45/289 (15%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSV---NHPNIIKL 440
IG G + V + D H ALK + ++ G EV +L+ + +HPNI++L
Sbjct: 8 IGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRL 67
Query: 441 LD-----EYDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHD 493
+D D ++ LV E + DL + K E K + + L +LH
Sbjct: 68 MDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA 126
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA-----QRVLRPMFTVCGTPTYVAPEIL 548
N IVHRD+KPEN+LV G +K+ DFGLA Q L P V T Y APE+L
Sbjct: 127 NCIVHRDLKPENILVTSGG----QVKLADFGLARIYSCQMALTP---VVVTLWYRAPEVL 179
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPFVSDTN-DQ-DELFD------------DILSGQ 594
+S Y +D+W+ G I + P F ++ DQ ++FD D+ +
Sbjct: 180 LQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPR 239
Query: 595 YGF----PSPYWD---DISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
F P P +I E +L+ ML NP R SA L HP+
Sbjct: 240 GAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF 288
>gnl|CDD|176357 cd01617, DCX, Ubiquitin-like domain of DCX. DCX The
ubiquitin-like DCX domain is present in tandem within
the N-terminal half of the doublecortin protein.
Doublecortin is expressed in migrating neurons.
Mutations in the gene encoding doublecortin cause
lissencephaly in males and 'double-cortex syndrome' in
females.
Length = 80
Score = 95.3 bits (238), Expect = 7e-24
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 101 KRIRFLCNGDKFFKGVVMAVGPERYRSFDSLLEELTRALAENINLPSGVRILFTMDGQKV 160
KR+ NGD FFKGV + V R++SFD+LL++LT + + P VR L+T+DG
Sbjct: 1 KRVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLD---PGAVRKLYTLDGGHR 57
Query: 161 TN-IDELEDGKFYICSSSGDQFKK 183
+ +DELEDG Y+ S + FKK
Sbjct: 58 VSLLDELEDGGVYVA-SGREPFKK 80
Score = 69.5 bits (171), Expect = 8e-15
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 225 RIIIVIRNGIRPRKVVRALLNKRNAPSLDQCFSTITDIVKLDTGAVRKVYTLNGNQLARL 284
+ ++V RNG K VR L+N+R S D +T+ V+LD GAVRK+YTL+G L
Sbjct: 1 KRVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSL 60
Query: 285 SDFFKSDDVFFAYGSER 301
D + V+ A G E
Sbjct: 61 LDELEDGGVYVASGREP 77
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 101 bits (252), Expect = 7e-24
Identities = 74/266 (27%), Positives = 121/266 (45%), Gaps = 29/266 (10%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
IG G+F V + D A+KIID + + + I+ E+ +L + P + K Y
Sbjct: 12 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 71
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPE 504
+ +L++++E + GG D + E + + + L YLH +HRDIK
Sbjct: 72 LKDTKLWIIMEYLGGGSALDLLEPG-PLDETQIATILREILKGLDYLHSEKKIHRDIKAA 130
Query: 505 NLLVEMSGCHVKVLKVGDFGLA-----QRVLRPMFTVCGTPTYVAPEILNESGYGVKIDV 559
N+L+ G +K+ DFG+A ++ R F GTP ++APE++ +S Y K D+
Sbjct: 131 NVLLSEHG----EVKLADFGVAGQLTDTQIKRNTFV--GTPFWMAPEVIKQSAYDSKADI 184
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDELF------DDILSGQYGFPSPYWDDISEEAKELI 613
W+ G+ L G PP S+ + LF L G Y P KE +
Sbjct: 185 WSLGITAIELAKGEPPH-SELHPMKVLFLIPKNNPPTLEGNYSKP----------LKEFV 233
Query: 614 SHMLESNPDLRFSAEDVLDHPWLERS 639
L P R +A+++L H ++ R
Sbjct: 234 EACLNKEPSFRPTAKELLKHKFIVRF 259
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 102 bits (256), Expect = 1e-23
Identities = 93/289 (32%), Positives = 131/289 (45%), Gaps = 45/289 (15%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKII-DKSKLLGKKQMIENEVNILRSVNHPN 436
RY + ++IG G++ VV D H A+K I D + + I E+ +LR + HP+
Sbjct: 1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPD 60
Query: 437 I-----IKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYL 491
I I L ++Y+V EL+ DL I N + E +F L AL Y+
Sbjct: 61 IVEIKHIMLPPSRREFKDIYVVFELM-ESDLHQVIKANDDLTPEHHQFFLYQLLRALKYI 119
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT---------- 541
H + HRD+KP+N+L + C LK+ DFGLA R F TPT
Sbjct: 120 HTANVFHRDLKPKNILAN-ADCK---LKICDFGLA----RVAFN--DTPTAIFWTDYVAT 169
Query: 542 --YVAPEILNE--SGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQDELFDDILSGQYG 596
Y APE+ S Y ID+W+ G I +L G P F + Q +L D+L G
Sbjct: 170 RWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLL----G 225
Query: 597 FPSPYWDDIS----EEAKELISHMLESNP---DLRFSAEDVLDHPWLER 638
PSP + IS E+A+ +S M + P +F D L LER
Sbjct: 226 TPSP--ETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLER 272
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 101 bits (254), Expect = 2e-23
Identities = 85/307 (27%), Positives = 138/307 (44%), Gaps = 53/307 (17%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
RY + +G G+ +V D D A+K I + K + E+ I+R ++H NI
Sbjct: 6 RYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALR-EIKIIRRLDHDNI 64
Query: 438 IKLLD--------------EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQS 483
+K+ + N +Y+V E ++ DL + + + SEE ++
Sbjct: 65 VKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMET-DLANVLEQG-PLSEEHARLFMYQ 122
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG----- 538
L L Y+H ++HRD+KP N+ + VLK+GDFGLA R++ P ++ G
Sbjct: 123 LLRGLKYIHSANVLHRDLKPANVFINTEDL---VLKIGDFGLA-RIVDPHYSHKGYLSEG 178
Query: 539 --TPTYVAPEI-LNESGYGVKIDVWAAGVILYILLCGFPPF-----------------VS 578
T Y +P + L+ + Y ID+WAAG I +L G P F V
Sbjct: 179 LVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVV 238
Query: 579 DTNDQDELFDDI---LSGQYGFP-SPYWD---DISEEAKELISHMLESNPDLRFSAEDVL 631
D++EL + I + G P P D ++ EA + + +L NP R +AE+ L
Sbjct: 239 REEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEAL 298
Query: 632 DHPWLER 638
HP++
Sbjct: 299 MHPYMSC 305
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 101 bits (252), Expect = 2e-23
Identities = 92/289 (31%), Positives = 136/289 (47%), Gaps = 38/289 (13%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK--SKLLGKKQMIENEVNILRSVNHP 435
RY Q +G G F +V D+ + A+K I K S + K+ E+ +L+ + H
Sbjct: 11 RYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYR-ELKLLKHLRHE 69
Query: 436 NIIKLLDEYDTNNE-LYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN 494
NII L D + + E +Y V EL+ G DL ++ + F+ Q L L Y+H
Sbjct: 70 NIISLSDIFISPLEDIYFVTELL-GTDLHRLLTSRPLEKQFIQYFLYQIL-RGLKYVHSA 127
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFT-VCGTPTYVAPEI-LNESG 552
+VHRD+KP N+L+ C LK+ DFGLA R+ P T T Y APEI L
Sbjct: 128 GVVHRDLKPSNILIN-ENCD---LKICDFGLA-RIQDPQMTGYVSTRYYRAPEIMLTWQK 182
Query: 553 YGVKIDVWAAGVILYILLCGFPPF-----------VSDT--NDQDELFDDILS-GQYGF- 597
Y V++D+W+AG I +L G P F ++D D++ + I S F
Sbjct: 183 YDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFV 242
Query: 598 -------PSPY---WDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
P P+ + + A +L+ ML +P R SA + L HP+L
Sbjct: 243 QSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYL 291
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 100 bits (249), Expect = 3e-23
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 21/265 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPNIIKL 440
+++G G F V + A K ++K ++ +K M NE IL VN ++ L
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSL 65
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
Y+T + L LV+ ++ GGDL I N F E+ + F L L L IV+
Sbjct: 66 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVY 125
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNESGYGVK 556
RD+KPEN+L++ G H+ ++ D GLA ++ + GT Y+APE++N Y
Sbjct: 126 RDLKPENILLDDRG-HI---RISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFS 181
Query: 557 IDVWAAGVILYILLCGFPPF--VSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
D W G ++Y ++ G PF + ++E+ + Q Y + SE+AK +
Sbjct: 182 PDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQ----EEYSEKFSEDAKSICR 237
Query: 615 HMLESNPDLRF-----SAEDVLDHP 634
+L NP R A V HP
Sbjct: 238 MLLTKNPKERLGCRGNGAAGVKQHP 262
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 99.3 bits (247), Expect = 3e-23
Identities = 61/212 (28%), Positives = 110/212 (51%), Gaps = 20/212 (9%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKII----DKSKLLGKKQMIENEVNILRSVNH 434
+ +G+++G G F V YD + A+K + D + + +E E+ +L+++ H
Sbjct: 4 WRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRH 63
Query: 435 PNIIK----LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSY 490
I++ L D +L + +E + GG + D + +E ++ T+ + +SY
Sbjct: 64 DRIVQYYGCLRDP--EEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSY 121
Query: 491 LHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF------TVCGTPTYVA 544
LH N IVHRDIK N+L + +G +K+GDFG ++R+ +V GTP +++
Sbjct: 122 LHSNMIVHRDIKGANILRDSAGN----VKLGDFGASKRIQTICMSGTGIKSVTGTPYWMS 177
Query: 545 PEILNESGYGVKIDVWAAGVILYILLCGFPPF 576
PE+++ GYG K DVW+ + +L PP+
Sbjct: 178 PEVISGEGYGRKADVWSVACTVVEMLTEKPPW 209
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 100 bits (251), Expect = 3e-23
Identities = 79/321 (24%), Positives = 142/321 (44%), Gaps = 61/321 (19%)
Query: 370 NIPSKLLQRYS-VGQIIGDGNFAVVRQVYDKHKDMDCA---LKIID-KSKLLGKKQMIEN 424
N+ + +RY G +G+G + V + YD A +KII+ + + +Q++
Sbjct: 1 NMSFSISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGM 60
Query: 425 ---------EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEE 475
E+ I+ + H NI+ L+D Y + + LV++++ DL + + ++ +E
Sbjct: 61 CGIHFTTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMAS-DLKKVVDRKIRLTES 119
Query: 476 DSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM-F 534
K + + + L+ LH Y +HRD+ P N+ + G + K+ DFGLA+R P
Sbjct: 120 QVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKG----ICKIADFGLARRYGYPPYS 175
Query: 535 TVCG----------------TPTYVAPEILNESG-YGVKIDVWAAGVILYILLCGFPPFV 577
T Y APE+L + Y +D+W+ G I LL G P F
Sbjct: 176 DTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLF- 234
Query: 578 SDTNDQDEL---FDDI---------------LSGQYGFPSP-----YWDDISEEAKELIS 614
N+ D+L F+ + L ++ P + + S++A +L+
Sbjct: 235 PGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQ 294
Query: 615 HMLESNPDLRFSAEDVLDHPW 635
+L+ NP R SA++ L H +
Sbjct: 295 SLLKLNPLERISAKEALKHEY 315
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 99.4 bits (248), Expect = 4e-23
Identities = 78/291 (26%), Positives = 116/291 (39%), Gaps = 51/291 (17%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G++A V + K ALK I G E ++L+ + H NI+ L D
Sbjct: 13 LGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDII 72
Query: 445 DTNNELYLVIELIKGGDLFDAISK--------NVKFSEEDSKFMTQSLASALSYLHDNYI 496
T L LV E + DL + NV+ F+ Q L L+Y H +
Sbjct: 73 HTKKTLTLVFEYLDT-DLKQYMDDCGGGLSMHNVRL------FLFQ-LLRGLAYCHQRRV 124
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEIL-NESG 552
+HRD+KP+NLL+ G LK+ DFGLA+ P T T Y P++L +
Sbjct: 125 LHRDLKPQNLLISERG----ELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTE 180
Query: 553 YGVKIDVWAAGVILYILLCGFPPF--VSDTNDQDELFDDIL------------------S 592
Y +D+W G I Y + G P F +D DQ +L
Sbjct: 181 YSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKP 240
Query: 593 GQYGFPSP-----YWDDIS--EEAKELISHMLESNPDLRFSAEDVLDHPWL 636
+ F P + + +EL L+ P R SA + + HP+
Sbjct: 241 YSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF 291
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 99.5 bits (248), Expect = 6e-23
Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 24/273 (8%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK-----QMIENEVNILRS 431
+ ++ + IG G+F V D + A+K K GK+ Q I EV L+
Sbjct: 15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIK---KMSYSGKQSNEKWQDIIKEVRFLQQ 71
Query: 432 VNHPNIIKLLDEYDTNNELYLVIELIKG--GDLFDAISKNVKFSEEDSKFMTQSLASALS 489
+ HPN I+ Y + +LV+E G D+ + K ++ E + + L+
Sbjct: 72 LRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVHKKPLQ--EVEIAAICHGALQGLA 129
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEI-- 547
YLH + +HRDIK N+L+ G +K+ DFG A ++ P + GTP ++APE+
Sbjct: 130 YLHSHERIHRDIKAGNILLTEPG----TVKLADFGSAS-LVSPANSFVGTPYWMAPEVIL 184
Query: 548 -LNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDIS 606
++E Y K+DVW+ G+ L PP + N L+ Q P+ +D S
Sbjct: 185 AMDEGQYDGKVDVWSLGITCIELAERKPPLFN-MNAMSALYH---IAQNDSPTLSSNDWS 240
Query: 607 EEAKELISHMLESNPDLRFSAEDVLDHPWLERS 639
+ + + L+ P R S+E++L H ++ R
Sbjct: 241 DYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRE 273
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 100 bits (249), Expect = 7e-23
Identities = 92/299 (30%), Positives = 136/299 (45%), Gaps = 51/299 (17%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKS-KLLGKKQMIENEVNILRSVNHP 435
+RY +G G + V YD A+K + + + L + E+ +L+ + H
Sbjct: 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHE 74
Query: 436 NIIKLLDEY------DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALS 489
N+I LLD + + NE+YLV L+ G DL + I K K S+E +F+ L L
Sbjct: 75 NVIGLLDVFTPATSIENFNEVYLVTNLM-GADL-NNIVKCQKLSDEHVQFLIYQLLRGLK 132
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEI-L 548
Y+H I+HRD+KP N+ V C +++L DFGLA++ M T Y APEI L
Sbjct: 133 YIHSAGIIHRDLKPSNVAVN-EDCELRIL---DFGLARQADDEMTGYVATRWYRAPEIML 188
Query: 549 NESGYGVKIDVWAAGVILYILLCG---FPPFVSDTNDQDELFDDILSGQYGFPSP-YWDD 604
N Y +D+W+ G I+ LL G FP +D DQ + +++ G PSP
Sbjct: 189 NWMHYNQTVDIWSVGCIMAELLKGKALFPG--NDYIDQLKRIMEVV----GTPSPEVLKK 242
Query: 605 ISEE---------------------------AKELISHMLESNPDLRFSAEDVLDHPWL 636
IS E A +L+ ML + D R SA + L HP+
Sbjct: 243 ISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYF 301
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 100 bits (250), Expect = 8e-23
Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 60/285 (21%)
Query: 406 ALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLF 463
A+K + K +L + Q+ ++ E +IL ++ ++KL + + LY V++ I GGD+
Sbjct: 30 AMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMM 89
Query: 464 DAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDF 523
+ + F E ++F L A+ +H +HRDIKP+N+L+++ G H+K+ DF
Sbjct: 90 SLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDG-HIKLT---DF 145
Query: 524 GLA---------------------------------------------QRVLRP-----M 533
GL QR +
Sbjct: 146 GLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLA 205
Query: 534 FTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSG 593
++ GTP Y+APE+L GY D W+ GVIL+ +L G PPF++ T + +L +++
Sbjct: 206 HSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQL--KVINW 263
Query: 594 QYGFPSPYWDDISEEAKELISHMLESNPDL--RFSAEDVLDHPWL 636
+ P +S EA +LI+ + S + R A+D+ HP+
Sbjct: 264 ENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFF 308
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 98.2 bits (244), Expect = 1e-22
Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 27/268 (10%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPNIIKL 440
+++G G F V + A K ++K ++ +K M NE IL VN ++ L
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSL 65
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
Y+T + L LV+ L+ GGDL I F E + F + L LH IV+
Sbjct: 66 AYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVY 125
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNESGYGVK 556
RD+KPEN+L++ G H+ ++ D GLA V + + GT Y+APE++ Y
Sbjct: 126 RDLKPENILLDDHG-HI---RISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFS 181
Query: 557 IDVWAAGVILYILLCGFPPFVS-----DTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
D WA G +LY ++ G PF + + L ++ Y + S +A+
Sbjct: 182 PDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-------QEEYSEKFSPDARS 234
Query: 612 LISHMLESNPDLRF-----SAEDVLDHP 634
L +L +P R A +V +HP
Sbjct: 235 LCKMLLCKDPKERLGCQGGGAREVKEHP 262
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 99.4 bits (248), Expect = 1e-22
Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 83/323 (25%)
Query: 375 LLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN------EVNI 428
+L+RY + IG G +V YD + A+K KL Q + + E+ +
Sbjct: 14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIK-----KLSRPFQNVTHAKRAYRELVL 68
Query: 429 LRSVNHPNIIKLLD------EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ 482
++ VNH NII LL+ + ++YLV+EL+ +L I ++ E S + Q
Sbjct: 69 MKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQMDLD-HERMSYLLYQ 126
Query: 483 SLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT- 541
L + +LH I+HRD+KP N++V+ S C +K+L DFGLA R F + TP
Sbjct: 127 MLC-GIKHLHSAGIIHRDLKPSNIVVK-SDCTLKIL---DFGLA-RTAGTSFMM--TPYV 178
Query: 542 ----YVAPEILNESGYGVKIDVWAAGVILYILLCG---FPPFVSDTNDQ----------- 583
Y APE++ GY +D+W+ G I+ ++ G FP +D DQ
Sbjct: 179 VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPG--TDHIDQWNKIIEQLGTP 236
Query: 584 ---------------------------DELFDDILSGQYGFPSPYWDDI---SEEAKELI 613
+ELF D+L FP + +A++L+
Sbjct: 237 SDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVL-----FPPDSESHNKLKASQARDLL 291
Query: 614 SHMLESNPDLRFSAEDVLDHPWL 636
S ML +P+ R S +D L HP++
Sbjct: 292 SKMLVIDPEKRISVDDALQHPYI 314
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 97.4 bits (242), Expect = 2e-22
Identities = 61/212 (28%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKII----DKSKLLGKKQMIENEVNILRSVNH 434
+ +G+++G G F V YD + A+K + + + + +E E+ +L+++ H
Sbjct: 4 WRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLH 63
Query: 435 PNIIK----LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSY 490
I++ L D + L + +E + GG + D + +E ++ T+ + +SY
Sbjct: 64 ERIVQYYGCLRDPMERT--LSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSY 121
Query: 491 LHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL------RPMFTVCGTPTYVA 544
LH N IVHRDIK N+L + G +K+GDFG ++R+ M +V GTP +++
Sbjct: 122 LHSNMIVHRDIKGANILRDSVGN----VKLGDFGASKRLQTICLSGTGMKSVTGTPYWMS 177
Query: 545 PEILNESGYGVKIDVWAAGVILYILLCGFPPF 576
PE+++ GYG K D+W+ G + +L PP+
Sbjct: 178 PEVISGEGYGRKADIWSVGCTVVEMLTEKPPW 209
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 97.9 bits (244), Expect = 2e-22
Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 18/220 (8%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKII---DKSKLLGKKQMIENEVNILRSVN 433
++Y ++G+G++ +V + K A+K + K++ K M E+ +L+ +
Sbjct: 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAM--REIRMLKQLR 58
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDS--KFMTQSLASALSYL 491
H N++ L++ + LYLV E + + D + K +E K++ Q L + +
Sbjct: 59 HENLVNLIEVFRRKKRLYLVFEFVDH-TVLDDLEKYPNGLDESRVRKYLFQIL-RGIEFC 116
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP--MFT-VCGTPTYVAPEIL 548
H + I+HRDIKPEN+LV SG V+K+ DFG A+ + P ++T T Y APE+L
Sbjct: 117 HSHNIIHRDIKPENILVSQSG----VVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELL 172
Query: 549 -NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF 587
++ YG +D+WA G ++ +L G P F D+ D D+L+
Sbjct: 173 VGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDS-DIDQLY 211
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 97.6 bits (243), Expect = 2e-22
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 23/258 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK----QMIENEVNILRSVNHPNIIKL 440
+G G F V + A K ++K +L +K M+E IL V+ I+ L
Sbjct: 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKR--ILAKVHSRFIVSL 58
Query: 441 LDEYDTNNELYLVIELIKGGDL----FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
+ T +L LV+ ++ GGDL ++ +N F E + F T + S L +LH I
Sbjct: 59 AYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRI 118
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV---CGTPTYVAPEILNESGY 553
++RD+KPEN+L++ G +V ++ D GLA + GTP ++APE+L Y
Sbjct: 119 IYRDLKPENVLLDNDG-NV---RISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEY 174
Query: 554 GVKIDVWAAGVILYILLCGFPPFVS--DTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
+D +A GV LY ++ PF + + + EL IL+ Y D S +K
Sbjct: 175 DFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND----SVTYPDKFSPASKS 230
Query: 612 LISHMLESNPDLRFSAED 629
+L +P+ R D
Sbjct: 231 FCEALLAKDPEKRLGFRD 248
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 97.4 bits (242), Expect = 2e-22
Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 38/293 (12%)
Query: 367 ENLNIPSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEV 426
E+L P+ + + + IG G + V +V +K A+KI+D + ++ IE E
Sbjct: 15 ESLGDPT---DTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEE--IEAEY 69
Query: 427 NILRSV-NHPNIIKLL------DEYDTNNELYLVIELIKGGDLFDAISKNVKFSEE-DSK 478
NIL+S+ NHPN++K D+ +L+LV+EL GG + + + + + D
Sbjct: 70 NILQSLPNHPNVVKFYGMFYKADKL-VGGQLWLVLELCNGGSVTELVKGLLICGQRLDEA 128
Query: 479 FMTQSLASAL---SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF- 534
++ L AL +LH+N I+HRD+K N+L+ G +K+ DFG++ ++
Sbjct: 129 MISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGG----VKLVDFGVSAQLTSTRLR 184
Query: 535 --TVCGTPTYVAPEILN-----ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF 587
T GTP ++APE++ + Y + DVW+ G+ L G PP + D + LF
Sbjct: 185 RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPP-LFDMHPVKTLF 243
Query: 588 DDILSGQYGFPSP---YWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
+ P P + + IS L + + R S +L+HP+++
Sbjct: 244 KIPRN-----PPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK 291
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 95.4 bits (237), Expect = 8e-22
Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 23/268 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKS--KLLGKKQMIENEVNILRSVNH---PNII 438
IIG G F V A+K +DK K+ + + NE +L V+ P I+
Sbjct: 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIV 60
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
+ + T ++L +++L+ GGDL +S++ FSE + +F + L ++H+ ++V+
Sbjct: 61 CMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVY 120
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPTYVAPEILNES-GYGV 555
RD+KP N+L++ G HV ++ D GLA +P +V GT Y+APE+L + Y
Sbjct: 121 RDLKPANILLDEHG-HV---RISDLGLACDFSKKKPHASV-GTHGYMAPEVLQKGVAYDS 175
Query: 556 KIDVWAAGVILYILLCGFPPFVS-DTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
D ++ G +L+ LL G PF T D+ E+ L+ P D S E + L+
Sbjct: 176 SADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP----DSFSPELRSLLE 231
Query: 615 HMLESNPDLRF-----SAEDVLDHPWLE 637
+L+ + + R A++V +HP+
Sbjct: 232 GLLQRDVNRRLGCLGRGAQEVKEHPFFR 259
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 95.4 bits (237), Expect = 1e-21
Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 51/291 (17%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G++A V + + ALK+I G E ++L+ + H NI+ L D
Sbjct: 13 LGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDII 72
Query: 445 DTNNELYLVIELIKGGDLFDAISK--------NVKFSEEDSKFMTQSLASALSYLHDNYI 496
T L V E + DL + + NV+ FM Q L L+Y+H +I
Sbjct: 73 HTKETLTFVFEYMHT-DLAQYMIQHPGGLHPYNVRL------FMFQ-LLRGLAYIHGQHI 124
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEIL-NESG 552
+HRD+KP+NLL+ ++ LK+ DFGLA+ P T T Y P++L +
Sbjct: 125 LHRDLKPQNLLIS----YLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATD 180
Query: 553 YGVKIDVWAAGVILYILLCGFPPF--VSDTNDQDELF--------DDILSGQYGFPS--- 599
Y +D+W AG I +L G P F VSD +Q E +D G P+
Sbjct: 181 YSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKP 240
Query: 600 ------------PYWDDISE--EAKELISHMLESNPDLRFSAEDVLDHPWL 636
W +S +A++L S ML P R SA+D L HP+
Sbjct: 241 EWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF 291
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 97.0 bits (241), Expect = 1e-21
Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 62/287 (21%)
Query: 406 ALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLF 463
A+K + K +L + Q+ ++ E +IL ++ +++L + + LY V++ I GGD+
Sbjct: 30 AMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMM 89
Query: 464 DAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDF 523
+ + F E+ ++F L A+ +H +HRDIKP+N+L++ G H+K+ DF
Sbjct: 90 SLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG-HIKLT---DF 145
Query: 524 GLAQRV-------------------------------------LRPM------------- 533
GL L+P+
Sbjct: 146 GLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLA 205
Query: 534 FTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSG 593
++ GTP Y+APE+L +GY D W+ GVILY +L G PPF++ T + ++ +++
Sbjct: 206 HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQM--KVINW 263
Query: 594 QYGFPSPYWDDISEEAKELISHMLESNPDLRF---SAEDVLDHPWLE 637
Q P +S EA +LI + P+ R A+++ HP+ +
Sbjct: 264 QTSLHIPPQAKLSPEASDLIIKLCRG-PEDRLGKNGADEIKAHPFFK 309
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 95.3 bits (237), Expect = 1e-21
Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 42/296 (14%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSVNH 434
+ +Y + IG+G + VV + D+ + ALK I + + G E+++L+ + H
Sbjct: 1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH 60
Query: 435 PNIIKLLDEYDTNNELYLVIE-----LIKGGDLFDAISKNVKFSEEDSKFMTQSLASALS 489
NI++L D + LYLV E L K D +KN + + ++ Q L ++
Sbjct: 61 GNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIK---TYLYQIL-RGIA 116
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPE 546
Y H + ++HRD+KP+NLL++ LK+ DFGLA+ P+ T T Y APE
Sbjct: 117 YCHSHRVLHRDLKPQNLLIDRR---TNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPE 173
Query: 547 ILNES-GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF----------DDILSGQY 595
IL S Y +D+W+ G I ++ P F D+ + DELF ++ G
Sbjct: 174 ILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS-EIDELFKIFRILGTPNEETWPGVT 232
Query: 596 GFPS-----PYWD---------DISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
P P W + +L+S ML +P R +A L+H + +
Sbjct: 233 SLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFK 288
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 94.9 bits (236), Expect = 1e-21
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 35/272 (12%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKII----DKSKLLGKKQMIENEVNILRSVNHPNIIKL 440
+G GN+ V +V + + A+K I D+SK I E++IL P I+
Sbjct: 9 LGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQ----IIMELDILHKAVSPYIVDF 64
Query: 441 LDEYDTNNELYLVIELIKGGD---LFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY-I 496
+ +Y+ +E + G L+ E+ + +T ++ L +L + + I
Sbjct: 65 YGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNI 124
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TVCGTPTYVAPEILNESG--- 552
+HRD+KP N+LV +G +K+ DFG++ ++ + T G +Y+APE + G
Sbjct: 125 IHRDVKPTNVLVNGNG----QVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQ 180
Query: 553 ---YGVKIDVWAAGVILYILLCG-----FPPFVSDTNDQDELFDDILSGQYGFPSPYWDD 604
Y V+ DVW+ G L IL +PP +F + + G P
Sbjct: 181 NPTYTVQSDVWSLG--LSILEMALGRYPYPPETYAN-----IFAQLSAIVDGDPPTLPSG 233
Query: 605 ISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
S++A++ ++ L P+ R + +L+HPWL
Sbjct: 234 YSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWL 265
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 97.4 bits (242), Expect = 2e-21
Identities = 91/354 (25%), Positives = 156/354 (44%), Gaps = 61/354 (17%)
Query: 329 HTKLKSGTTCLDASGREVPKMPTKTSVARCATATIKRRENLNIPSKLLQRYSVGQIIGDG 388
H K G+ + + +++ + + ++ + +I + Y +G IIG+G
Sbjct: 18 HKANKGGSGKFEMNDKKLDEEERSHNNNAGEDEDEEKMIDNDINRSPNKSYKLGNIIGNG 77
Query: 389 NFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDT-- 446
+F VV + A+K K+L Q E+ I++++NH NII L D Y T
Sbjct: 78 SFGVVYEAICIDTSEKVAIK-----KVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTEC 132
Query: 447 --NNE----LYLVIELIKGGDLFDAISKNVKFSEEDS--------KFMTQSLASALSYLH 492
NE L +V+E I + K +K ++ K + L AL+Y+H
Sbjct: 133 FKKNEKNIFLNVVMEFIP-----QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH 187
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPTYVAPEI-L 548
+I HRD+KP+NLL++ + LK+ DFG A+ +L R + +C + Y APE+ L
Sbjct: 188 SKFICHRDLKPQNLLIDP---NTHTLKLCDFGSAKNLLAGQRSVSYIC-SRFYRAPELML 243
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPF--------------VSDTNDQDELFDDILSGQ 594
+ Y ID+W+ G I+ ++ G+P F V T +D+L ++
Sbjct: 244 GATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQL--KEMNPN 301
Query: 595 YG---FPSPYWDDIS--------EEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
Y FP D+ ++A IS L+ P R + + L P+ +
Sbjct: 302 YADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFD 355
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 94.4 bits (235), Expect = 2e-21
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 28/231 (12%)
Query: 406 ALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLF-- 463
A+KI+ KS L K+Q + EV L+ + H ++I L +Y++ EL++ G L
Sbjct: 34 AIKIL-KSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAF 92
Query: 464 --DAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLV-EMSGCHVKVLKV 520
+ + + M +A ++YL + +HRD+ N+LV E C KV
Sbjct: 93 LRSPEGQVLPVAS--LIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVC-----KV 145
Query: 521 GDFGLAQRVLRPMFTVCGTPT---YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
DFGLA+ + ++ + APE + + K DVW+ G++LY + G P+
Sbjct: 146 ADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPY 205
Query: 577 VSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLE---SNPDLR 624
N E++D I +G Y P P ++ +E+ MLE + P+ R
Sbjct: 206 PGMNN--HEVYDQITAG-YRMPCP-----AKCPQEIYKIMLECWAAEPEDR 248
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 95.9 bits (239), Expect = 2e-21
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 39/247 (15%)
Query: 425 EVNILRSVNHPNIIKLLD-----EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF 479
E+ +LR ++H N+I + D + N++Y+V EL+ DL I + S++ ++
Sbjct: 54 EIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMDT-DLHQIIRSSQTLSDDHCQY 112
Query: 480 MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTV 536
L L Y+H ++HRD+KP NLL+ + C LK+ DFGLA+ M
Sbjct: 113 FLYQLLRGLKYIHSANVLHRDLKPSNLLLN-ANCD---LKICDFGLARTTSEKGDFMTEY 168
Query: 537 CGTPTYVAPE-ILNESGYGVKIDVWAAGVILYILLCGFPPF--------------VSDTN 581
T Y APE +LN S Y IDVW+ G I LL P F + +
Sbjct: 169 VVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSP 228
Query: 582 DQDEL--FDDILSGQYGFPSPY---------WDDISEEAKELISHMLESNPDLRFSAEDV 630
+++L + + +Y PY + + A +L+ ML +P R + E+
Sbjct: 229 SEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEA 288
Query: 631 LDHPWLE 637
L HP+L
Sbjct: 289 LAHPYLA 295
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 93.9 bits (233), Expect = 4e-21
Identities = 84/290 (28%), Positives = 124/290 (42%), Gaps = 50/290 (17%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G +A V + K D ALK I G EV++L+ + H NI+ L D
Sbjct: 14 LGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDII 73
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDS---------KFMTQSLASALSYLHDNY 495
T L LV F+ + K++K +D K L L+Y H
Sbjct: 74 HTEKSLTLV---------FEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRK 124
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEI-LNES 551
++HRD+KP+NLL+ G LK+ DFGLA+ P T T Y P+I L +
Sbjct: 125 VLHRDLKPQNLLINERG----ELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGST 180
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQ-------------DELFDDILSGQ---- 594
Y +ID+W G I Y + G P F T ++ +E + ILS +
Sbjct: 181 DYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKS 240
Query: 595 YGFPSPYWDDISEEAK-------ELISHMLESNPDLRFSAEDVLDHPWLE 637
Y +P D + A EL+S +L+ R SAE+ + HP+
Sbjct: 241 YNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFH 290
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 93.1 bits (231), Expect = 5e-21
Identities = 76/268 (28%), Positives = 138/268 (51%), Gaps = 23/268 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENE---VNILRSVNHPNII 438
IIG G F V A+K +DK ++ K+ + NE ++++ + + P I+
Sbjct: 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIV 60
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
+ + T ++L +++L+ GGDL +S++ FSE++ +F + L ++H+ ++V+
Sbjct: 61 CMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVY 120
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRV--LRPMFTVCGTPTYVAPEILNE-SGYGV 555
RD+KP N+L++ G HV ++ D GLA +P +V GT Y+APE+L + + Y
Sbjct: 121 RDLKPANILLDEHG-HV---RISDLGLACDFSKKKPHASV-GTHGYMAPEVLQKGTAYDS 175
Query: 556 KIDVWAAGVILYILLCGFPPFVS-DTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
D ++ G +L+ LL G PF T D+ E+ L+ P D S E K L+
Sbjct: 176 SADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELP----DSFSPELKSLLE 231
Query: 615 HMLESNPDLRF-----SAEDVLDHPWLE 637
+L+ + R A++V +H + +
Sbjct: 232 GLLQRDVSKRLGCLGRGAQEVKEHVFFK 259
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 93.3 bits (232), Expect = 6e-21
Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 23/264 (8%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKII---DKSKLLGKKQMIENEVNILRSVNHPNIIKLL 441
+G GN V +V A K++ KS + +KQ I E+ I+ P I+
Sbjct: 13 LGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSV--RKQ-ILRELQIMHECRSPYIVSFY 69
Query: 442 DEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHD-NYIVHR 499
+ N + + +E + G L D I K E + ++ L+YL++ + I+HR
Sbjct: 70 GAFLNENNICMCMEFMDCGSL-DRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHR 128
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TVCGTPTYVAPEILNESGYGVKID 558
DIKP N+LV G +K+ DFG++ ++ + T GT TY++PE + Y VK D
Sbjct: 129 DIKPSNILVNSRG----QIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSD 184
Query: 559 VWAAGVILYILLCGFPPFVSDTNDQDELFD------DILSGQYGFPSPYW--DDISEEAK 610
VW+ G+ + L G PF + +N D+ D D+L P P D E+ +
Sbjct: 185 VWSLGISIIELALGKFPF-AFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLR 243
Query: 611 ELISHMLESNPDLRFSAEDVLDHP 634
+ + L +P R + + + P
Sbjct: 244 DFVDACLLKDPTERPTPQQLCAMP 267
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 93.6 bits (232), Expect = 6e-21
Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 37/284 (13%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G++A V + K ALK+I + G E ++L+ + H NI+ L D
Sbjct: 13 LGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDII 72
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDS-KFMTQSLASALSYLHDNYIVHRDIKP 503
T L LV E + DL + K+ ++ K L LSY+H YI+HRD+KP
Sbjct: 73 HTKETLTLVFEYVHT-DLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKP 131
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEI-LNESGYGVKIDV 559
+NLL+ +G LK+ DFGLA+ P T T Y P++ L + Y +D+
Sbjct: 132 QNLLISDTG----ELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDM 187
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDEL----------FDDILSGQYGFP----------- 598
W G I ++ G F + QD+L +D G + P
Sbjct: 188 WGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYS 247
Query: 599 ----SPYWDDIS--EEAKELISHMLESNPDLRFSAEDVLDHPWL 636
W+ +S A++L S +L+ P R SA+ L H +
Sbjct: 248 PKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYF 291
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 97.5 bits (242), Expect = 6e-21
Identities = 86/285 (30%), Positives = 132/285 (46%), Gaps = 40/285 (14%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHK---DMDCALKIIDKSKLLGKKQMIENEVNILRSV 432
L Y V + IG+G F V V KHK + C I + +K + EVN++R +
Sbjct: 12 LNEYEVIKKIGNGRFGEVFLV--KHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMREL 69
Query: 433 NHPNIIKLLDEY--DTNNELYLVIELIKGGDLFDAISKNVKF----SEEDSKFMTQSLAS 486
H NI++ +D + N +LY+++E GDL I K K E +T+ L
Sbjct: 70 KHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLH 129
Query: 487 ALSYLHD-------NYIVHRDIKPENLLVEMSGCHV-------------KVLKVGDFGLA 526
AL+Y H+ ++HRD+KP+N+ + H+ + K+GDFGL+
Sbjct: 130 ALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLS 189
Query: 527 QRV-LRPMFTVC-GTPTYVAPEIL--NESGYGVKIDVWAAGVILYILLCGFPPFVSDTND 582
+ + + M C GTP Y +PE+L Y K D+WA G I+Y L G PF N+
Sbjct: 190 KNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPF-HKANN 248
Query: 583 QDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSA 627
+L ++ G P S+E LI ++L + R SA
Sbjct: 249 FSQLISELKRG----PDLPIKGKSKELNILIKNLLNLSAKERPSA 289
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 92.9 bits (231), Expect = 7e-21
Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 43/285 (15%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIID-KSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
IG+G + V + ++ ALK + G E+ +L+ + H NI++L D
Sbjct: 8 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67
Query: 444 YDTNNELYLVIELIKGGDL---FDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
++ +L LV E DL FD+ + ++ S FM Q L L++ H + ++HRD
Sbjct: 68 LHSDKKLTLVFEYCDQ-DLKKYFDSCNGDIDPEIVKS-FMFQ-LLKGLAFCHSHNVLHRD 124
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEIL-NESGYGVK 556
+KP+NLL+ +G LK+ DFGLA+ P+ T Y P++L Y
Sbjct: 125 LKPQNLLINKNG----ELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTS 180
Query: 557 IDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPS-PYWDDISE-------- 607
ID+W+AG I L P + D+L + G P+ W +S+
Sbjct: 181 IDMWSAGCIFAELANAGRPLFPGNDVDDQL--KRIFRLLGTPTEESWPGVSKLPDYKPYP 238
Query: 608 -----------------EAKELISHMLESNPDLRFSAEDVLDHPW 635
++L+ ++L NP R SAE+ L HP+
Sbjct: 239 MYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPY 283
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 93.9 bits (233), Expect = 8e-21
Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 43/296 (14%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK---SKLLGKKQMIENEVNILRSVN 433
RY + +G G + V D+ A+K + + S+L K+ E+ +L+ +
Sbjct: 15 DRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAY--RELRLLKHMK 72
Query: 434 HPNIIKLLDEY--DTN----NELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASA 487
H N+I LLD + D + ++ YLV+ + G DL + K+ K SE+ +F+ +
Sbjct: 73 HENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDL-GKLMKHEKLSEDRIQFLVYQMLKG 130
Query: 488 LSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPE- 546
L Y+H I+HRD+KP NL V C +K+L DFGLA++ M T Y APE
Sbjct: 131 LKYIHAAGIIHRDLKPGNLAVN-EDCELKIL---DFGLARQTDSEMTGYVVTRWYRAPEV 186
Query: 547 ILNESGYGVKIDVWAAGVILYILLCGFPPF--------------VSDTNDQDEL----FD 588
ILN Y +D+W+ G I+ +L G P F V+ T ++ + +
Sbjct: 187 ILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSE 246
Query: 589 DILSGQYGFPSPYWDD-------ISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
D + P D + A ++ ML + + R +A + L HP+ E
Sbjct: 247 DAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFE 302
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 92.8 bits (230), Expect = 8e-21
Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 29/277 (10%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSV-NHPNI 437
+ + + IG G + V +V +K A+KI+D + ++ IE E NIL+++ +HPN+
Sbjct: 20 WEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEE--IEAEYNILKALSDHPNV 77
Query: 438 IKLLDEY-----DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK----FMTQSLASAL 488
+K Y ++L+LV+EL GG + D + +K E + ++ L
Sbjct: 78 VKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGL 137
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAP 545
+LH N +HRD+K N+L+ G +K+ DFG++ ++ T GTP ++AP
Sbjct: 138 QHLHVNKTIHRDVKGNNILLTTEGG----VKLVDFGVSAQLTSTRLRRNTSVGTPFWMAP 193
Query: 546 EILN-----ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
E++ +S Y + DVW+ G+ L G PP ++D + LF + P
Sbjct: 194 EVIACEQQLDSTYDARCDVWSLGITAIELGDGDPP-LADLHPMRALFKIPRNPPPTLHQP 252
Query: 601 -YWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
W S E + I L + + R + D+L H ++
Sbjct: 253 ELW---SNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI 286
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 93.8 bits (233), Expect = 9e-21
Identities = 87/311 (27%), Positives = 137/311 (44%), Gaps = 49/311 (15%)
Query: 365 RRENLNIPS-KLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK---SKLLGKKQ 420
RE +N +L +RY+ + +G G + V DK A+K + + S++ K+
Sbjct: 2 YREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRA 61
Query: 421 MIENEVNILRSVNHPNIIKLLD------EYDTNNELYLVIELIKGGDLFDAISK--NVKF 472
E+ +L+ + H N+I LLD D + YLV+ + + K
Sbjct: 62 Y--RELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPY-----MQTDLQKIMGHPL 114
Query: 473 SEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP 532
SE+ +++ + L Y+H I+HRD+KP NL V C +K+L DFGLA+
Sbjct: 115 SEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVN-EDCELKIL---DFGLARHADAE 170
Query: 533 MFTVCGTPTYVAPE-ILNESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQ------- 583
M T Y APE ILN Y +D+W+ G I+ +L G F D DQ
Sbjct: 171 MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKV 230
Query: 584 -----DEL---FDDILSGQY--GFP-------SPYWDDISEEAKELISHMLESNPDLRFS 626
E +D + Y P S + S +A +L+ MLE + D R +
Sbjct: 231 TGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLT 290
Query: 627 AEDVLDHPWLE 637
A + L+HP+ +
Sbjct: 291 ATEALEHPYFD 301
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 93.6 bits (232), Expect = 1e-20
Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 45/296 (15%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK--SKLLGKKQMIENEVNILRSVNH 434
+RY +G G + V +D + A+K + + ++ K+ E+ +L+ + H
Sbjct: 17 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR-ELRLLKHMKH 75
Query: 435 PNIIKLLD------EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASAL 488
N+I LLD + N++YLV L+ G DL + I K K +++ +F+ + L
Sbjct: 76 ENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADL-NNIVKCQKLTDDHVQFLIYQILRGL 133
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEI- 547
Y+H I+HRD+KP NL V C +K+L DFGLA+ M T Y APEI
Sbjct: 134 KYIHSADIIHRDLKPSNLAVN-EDCELKIL---DFGLARHTDDEMTGYVATRWYRAPEIM 189
Query: 548 LNESGYGVKIDVWAAGVILYILLCG---FPPFVSDTNDQ------------DELFDDI-- 590
LN Y +D+W+ G I+ LL G FP +D DQ EL I
Sbjct: 190 LNWMHYNQTVDIWSVGCIMAELLTGRTLFPG--TDHIDQLKLILRLVGTPGAELLKKISS 247
Query: 591 ------LSGQYGFPSPYWDDI----SEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
+ P + ++ + A +L+ ML + D R +A L H +
Sbjct: 248 ESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYF 303
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 91.4 bits (227), Expect = 1e-20
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 20/252 (7%)
Query: 380 SVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
+ + +G G F VV + K D A+K+I + + + IE E ++ ++HPN+++
Sbjct: 7 TFLKELGSGQFGVVHLGKWRGKI-DVAIKMI-REGAMSEDDFIE-EAKVMMKLSHPNLVQ 63
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHDNYIVH 498
L +++V E + G L + + + K E M + A+ YL N +H
Sbjct: 64 LYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIH 123
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT-----YVAPEILNESGY 553
RD+ N LV V+KV DFGLA+ VL +T T + PE+ + S +
Sbjct: 124 RDLAARNCLVGEDN----VVKVSDFGLARYVLDDQYT-SSQGTKFPVKWAPPEVFDYSRF 178
Query: 554 GVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKEL 612
K DVW+ GV+++ + G P+ +N E+ + + +G Y P E +
Sbjct: 179 SSKSDVWSFGVLMWEVFSEGKMPYERFSN--SEVVESVSAG-YRLYRPKL--APTEVYTI 233
Query: 613 ISHMLESNPDLR 624
+ P+ R
Sbjct: 234 MYSCWHEKPEDR 245
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 92.0 bits (229), Expect = 1e-20
Identities = 79/287 (27%), Positives = 136/287 (47%), Gaps = 46/287 (16%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSK---LLGKKQMIENEVNILRSVNHPNIIKLL 441
IG+G++ VV + ++ A+K +S+ ++ K + E+ +L+ + HPN++ L+
Sbjct: 9 IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIAL--REIRMLKQLKHPNLVNLI 66
Query: 442 DEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDS-KFMTQSLASALSYLHDNYIVHRD 500
+ + +L+LV E + + + KN + E K + A+++ H + +HRD
Sbjct: 67 EVFRRKRKLHLVFEYCDH-TVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRD 125
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVC-GTPTYVAPEIL-NESGYGV 555
+KPEN+L+ G +K+ DFG A R+L +T T Y APE+L ++ YG
Sbjct: 126 VKPENILITKQG----QIKLCDFGFA-RILTGPGDDYTDYVATRWYRAPELLVGDTQYGP 180
Query: 556 KIDVWAAGVILYILLCGFP--PFVSDTNDQ---------------DELF--DDILSGQYG 596
+DVWA G + LL G P P SD DQ ++F + G
Sbjct: 181 PVDVWAIGCVFAELLTGQPLWPGKSDV-DQLYLIRKTLGDLIPRHQQIFSTNQFFKG-LS 238
Query: 597 FPSP--------YWDDISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
P P + +IS A + L+ +P R S E++L+HP+
Sbjct: 239 IPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEHPY 285
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 92.2 bits (229), Expect = 1e-20
Identities = 80/302 (26%), Positives = 132/302 (43%), Gaps = 60/302 (19%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIE----NEVNILRSVNH-PNI 437
+ IG+G + V + DK+ ALK K++L ++ I E+++L+ ++ I
Sbjct: 7 EKIGEGTYGKVYKARDKNTGKLVALK---KTRLEMDEEGIPPTALREISLLQMLSESIYI 63
Query: 438 IKLLDEYDTNNE-----LYLVIELIKGGDLFDAISKNVKFS----EEDS--KFMTQSLAS 486
++LLD + LYLV E + DL + N + + FM Q L
Sbjct: 64 VRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQ-LLK 121
Query: 487 ALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYV 543
+++ H + ++HRD+KP+NLLV+ +LK+ D GL + P+ + T Y
Sbjct: 122 GVAHCHKHGVMHRDLKPQNLLVDKQK---GLLKIADLGLGRAFSIPVKSYTHEIVTLWYR 178
Query: 544 APEI-LNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDEL--FDDILSGQYGFPS- 599
APE+ L + Y +D+W+ G I + P F D+ Q L F + G P+
Sbjct: 179 APEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLL-----GTPTE 233
Query: 600 ---------------PYWD---------DISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
P W D+S E +L+ ML +P R SA+ L HP+
Sbjct: 234 QVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPY 293
Query: 636 LE 637
+
Sbjct: 294 FD 295
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 90.2 bits (224), Expect = 3e-20
Identities = 76/258 (29%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
+ IG GNF V + K + A+K + K+ E IL+ +HPNI+KL+
Sbjct: 1 EKIGKGNFGDVYKGVLKGN-TEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIG 59
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSL--ASALSYLHDNYIVHRD 500
+Y+V+EL+ GG L + K K K + SL A+ + YL +HRD
Sbjct: 60 VCVQKQPIYIVMELVPGGSLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLESKNCIHRD 118
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG----TPT-YVAPEILNESGYGV 555
+ N LV + VLK+ DFG+++ ++TV P + APE LN Y
Sbjct: 119 LAARNCLVGENN----VLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTS 174
Query: 556 KIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
+ DVW+ G++L+ G P+ +N Q + I SG Y P+P EE L+
Sbjct: 175 ESDVWSYGILLWETFSLGDTPYPGMSNQQTR--ERIESG-YRMPAP--QLCPEEIYRLML 229
Query: 615 HMLESNPDLRFSAEDVLD 632
+P+ R S ++ +
Sbjct: 230 QCWAYDPENRPSFSEIYN 247
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 91.2 bits (226), Expect = 8e-20
Identities = 86/314 (27%), Positives = 145/314 (46%), Gaps = 66/314 (21%)
Query: 375 LLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK---SKLLGKKQMIENEVNILRS 431
+L+RY + IG G +V +D ++ A+K + + ++ K+ E+ +L+
Sbjct: 19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAY--RELVLLKC 76
Query: 432 VNHPNIIKLLDEYDTN------NELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLA 485
VNH NII LL+ + ++YLV+EL+ +L I +++ E ++ +
Sbjct: 77 VNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVI--HMELDHERMSYLLYQML 133
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP--MFTVCGTPTYV 543
+ +LH I+HRD+KP N++V+ S C +K+L DFGLA+ M T Y
Sbjct: 134 CGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKIL---DFGLARTACTNFMMTPYVVTRYYR 189
Query: 544 APEILNESGYGVKIDVWAAGVILYILLCGFPPFV-SDTNDQ------------------- 583
APE++ GY +D+W+ G I+ L+ G F +D DQ
Sbjct: 190 APEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRL 249
Query: 584 -------------------DELFDDILSGQYGFPSPYWDD--ISEEAKELISHMLESNPD 622
+ELF D + FPS D + +A++L+S ML +PD
Sbjct: 250 QPTVRNYVENRPQYPGISFEELFPD-----WIFPSESERDKLKTSQARDLLSKMLVIDPD 304
Query: 623 LRFSAEDVLDHPWL 636
R S ++ L HP++
Sbjct: 305 KRISVDEALRHPYI 318
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 89.3 bits (221), Expect = 8e-20
Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 24/279 (8%)
Query: 366 RENLNIPSKLLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENE 425
R N +L+QR IG G + V + + + A+K+I K + +++ E
Sbjct: 4 RRNPQEDFELIQR------IGSGTYGDVYKARNVNTGELAAIKVI-KLEPGEDFAVVQQE 56
Query: 426 VNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLA 485
+ +++ H NI+ Y ++L++ +E GG L D SE ++++
Sbjct: 57 IIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETL 116
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV---LRPMFTVCGTPTY 542
L YLH +HRDIK N+L+ +G HV K+ DFG++ ++ + + GTP +
Sbjct: 117 QGLYYLHSKGKMHRDIKGANILLTDNG-HV---KLADFGVSAQITATIAKRKSFIGTPYW 172
Query: 543 VAPEIL---NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPS 599
+APE+ + GY D+WA G I I L P + D + LF L + F
Sbjct: 173 MAPEVAAVERKGGYNQLCDIWAVG-ITAIELAELQPPMFDLHPMRALF---LMTKSNFQP 228
Query: 600 PYWDD---ISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
P D S + L NP R +AE +L HP+
Sbjct: 229 PKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF 267
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 90.1 bits (223), Expect = 1e-19
Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 18/261 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKS--KLLGKKQMIENEVNILRSVNHPNIIKLLD 442
IG G+F V + H + A+K + S + K Q I EV L+ + HPN I+
Sbjct: 29 IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKG 88
Query: 443 EYDTNNELYLVIELIKGG--DLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
Y + +LV+E G DL + K ++ E + +T L+YLH + ++HRD
Sbjct: 89 CYLKEHTAWLVMEYCLGSASDLLEVHKKPLQ--EVEIAAITHGALQGLAYLHSHNMIHRD 146
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEI---LNESGYGVKI 557
IK N+L+ G +K+ DFG A P + GTP ++APE+ ++E Y K+
Sbjct: 147 IKAGNILLTEPG----QVKLADFGSAS-KSSPANSFVGTPYWMAPEVILAMDEGQYDGKV 201
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
DVW+ G+ L PP + N L+ Q P+ ++ ++ + + + L
Sbjct: 202 DVWSLGITCIELAERKPPLF-NMNAMSALYH---IAQNDSPTLQSNEWTDSFRGFVDYCL 257
Query: 618 ESNPDLRFSAEDVLDHPWLER 638
+ P R ++ ++L H ++ R
Sbjct: 258 QKIPQERPASAELLRHDFVRR 278
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 89.3 bits (221), Expect = 2e-19
Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 24/264 (9%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK-----QMIENEVNILRSVNHPNIIK 439
IG G+F V D A+K + S GK+ Q I EV L+ + HPN I+
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSYS---GKQSNEKWQDIIKEVRFLQKLRHPNTIQ 79
Query: 440 LLDEYDTNNELYLVIELIKGG--DLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIV 497
Y + +LV+E G DL + K ++ E + +T L+YLH + ++
Sbjct: 80 YRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQ--EVEIAAVTHGALQGLAYLHSHNMI 137
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEI---LNESGYG 554
HRD+K N+L+ G ++K+GDFG A ++ P GTP ++APE+ ++E Y
Sbjct: 138 HRDVKAGNILLSEPG----LVKLGDFGSAS-IMAPANXFVGTPYWMAPEVILAMDEGQYD 192
Query: 555 VKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELIS 614
K+DVW+ G+ L PP + N L+ + S +W SE + +
Sbjct: 193 GKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIAQNESPALQSGHW---SEYFRNFVD 248
Query: 615 HMLESNPDLRFSAEDVLDHPWLER 638
L+ P R ++E +L H ++ R
Sbjct: 249 SCLQKIPQDRPTSEVLLKHRFVLR 272
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 88.5 bits (219), Expect = 2e-19
Identities = 89/299 (29%), Positives = 127/299 (42%), Gaps = 50/299 (16%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYD-KHKDMDCALKIID-KSKLLGKKQMIENEVNILR---S 431
Q+Y IG+G + V + D K+ ALK + ++ G EV +LR +
Sbjct: 1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET 60
Query: 432 VNHPNIIKLLD-----EYDTNNELYLVIELIKGGDLFDAISK--NVKFSEEDSKFMTQSL 484
HPN+++L D D +L LV E + DL + K E K M L
Sbjct: 61 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQL 119
Query: 485 ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFT--VCGTPTY 542
L +LH + +VHRD+KP+N+LV SG +K+ DFGLA+ M V T Y
Sbjct: 120 LRGLDFLHSHRVVHRDLKPQNILVTSSG----QIKLADFGLARIYSFQMALTSVVVTLWY 175
Query: 543 VAPEILNESGYGVKIDVWAAGVILYILLCGFPPFV--SDTNDQDELFDDILSGQYGFPSP 600
APE+L +S Y +D+W+ G I + P F SD + ++ D I G P
Sbjct: 176 RAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI-----GLPGE 230
Query: 601 ------------------------YWDDISEEAKELISHMLESNPDLRFSAEDVLDHPW 635
+ DI E K+L+ L NP R SA L HP+
Sbjct: 231 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 289
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 87.8 bits (217), Expect = 3e-19
Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 18/266 (6%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
Y + Q +G G + V + + H A+KII K + +I+ E+ +++ H N
Sbjct: 9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKII-KLEPGDDFSLIQQEIFMVKECKHCN 67
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
I+ Y + +L++ +E GG L D SE ++ + L+YLH
Sbjct: 68 IVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGK 127
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTPTYVAPEIL---NE 550
+HRDIK N+L+ +G +K+ DFG+A ++ + + GTP ++APE+
Sbjct: 128 MHRDIKGANILLTDNG----DVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKN 183
Query: 551 SGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD---ISE 607
GY D+WA G I I L P + D + LF L + F P D S
Sbjct: 184 GGYNQLCDIWAVG-ITAIELAELQPPMFDLHPMRALF---LMSKSNFQPPKLKDKTKWSS 239
Query: 608 EAKELISHMLESNPDLRFSAEDVLDH 633
+ L NP R +AE +L H
Sbjct: 240 TFHNFVKISLTKNPKKRPTAERLLTH 265
>gnl|CDD|217637 pfam03607, DCX, Doublecortin.
Length = 60
Score = 79.9 bits (198), Expect = 1e-18
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 118 MAVGPERYRSFDSLLEELTRALAENINLPSGVRILFTMDGQKVTNIDELEDGKFYICSSS 177
+ V R++SFD+LL++LT E + LPSGVR L+T+DG +VT++DELEDG Y+ +
Sbjct: 1 LVVSRRRFKSFDALLDDLT----EKVKLPSGVRKLYTLDGHRVTSLDELEDGGSYVAAGR 56
Query: 178 GDQFK 182
++FK
Sbjct: 57 -ERFK 60
Score = 55.6 bits (135), Expect = 3e-10
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 243 LLNKRNAPSLDQCFSTITDIVKLDTGAVRKVYTLNGNQLARLSDFFKSDDVFFAYGSER 301
++++R S D +T+ VKL +G VRK+YTL+G+++ L + + + A G ER
Sbjct: 2 VVSRRRFKSFDALLDDLTEKVKLPSG-VRKLYTLDGHRVTSLDE-LEDGGSYVAAGRER 58
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 86.2 bits (213), Expect = 1e-18
Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 378 RYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNH 434
++ V ++G+G + VV + K A+K S+ +++ E E+ +LR++
Sbjct: 2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSE--ENEEVKETTLRELKMLRTLKQ 59
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGG--DLFDAISKNVKFSEEDSKFMTQSLASALSYLH 492
NI++L + + +LYLV E ++ +L + + V E + L A+ + H
Sbjct: 60 ENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGV--PPEKVRSYIYQLIKAIHWCH 117
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFT-VCGTPTYVAPEIL 548
N IVHRDIKPENLL+ H VLK+ DFG A+ + +T T Y +PE+L
Sbjct: 118 KNDIVHRDIKPENLLIS----HNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELL 173
Query: 549 NESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFD------DILSGQYG------ 596
+ YG +D+W+ G IL L G P F ++ + D+LF + + Q
Sbjct: 174 LGAPYGKAVDMWSVGCILGELSDGQPLFPGES-EIDQLFTIQKVLGPLPAEQMKLFYSNP 232
Query: 597 ------FPS---------PYWDDISEEAKELISHMLESNPDLRFSAEDVLDHP 634
FP+ Y +S +L+ ++L+ NP R+ E L+HP
Sbjct: 233 RFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHP 285
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 85.0 bits (210), Expect = 2e-18
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 15/217 (6%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
Q IG G F +V Y K A+K I + + ++ IE E ++ ++HP +++L
Sbjct: 10 QEIGSGQFGLVWLGYWLEKR-KVAIKTI-REGAMSEEDFIE-EAQVMMKLSHPKLVQLYG 66
Query: 443 EYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
+ + LV E ++ G L D + ++ KFS+E M + ++YL + ++HRD+
Sbjct: 67 VCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDL 126
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC-GTP---TYVAPEILNESGYGVKI 557
N LV + +V+KV DFG+ + VL +T GT + +PE+ + S Y K
Sbjct: 127 AARNCLVGEN----QVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKS 182
Query: 558 DVWAAGVILYILLC-GFPPFVSDTNDQDELFDDILSG 593
DVW+ GV+++ + G P+ + +N E+ + I +G
Sbjct: 183 DVWSFGVLMWEVFSEGKTPYENRSN--SEVVETINAG 217
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 86.9 bits (215), Expect = 2e-18
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 416 LGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEE 475
+G+K E +L++VNHP++I++ D + +V+ DL+ ++K +
Sbjct: 98 IGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYSS-DLYTYLTKRSRPLPI 156
Query: 476 DSKFMTQ-SLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ-RVLRPM 533
D + + + L YLH I+HRD+K EN+ + V + +GD G AQ V+ P
Sbjct: 157 DQALIIEKQILEGLRYLHAQRIIHRDVKTENIFIN----DVDQVCIGDLGAAQFPVVAPA 212
Query: 534 FT-VCGTPTYVAPEILNESGYGVKIDVWAAGVILYILL 570
F + GT APE+L Y K D+W+AG++L+ +L
Sbjct: 213 FLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEML 250
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 86.0 bits (213), Expect = 2e-18
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 48/294 (16%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G GN VV +V + + A K+I + I E+ +L N P I+ +
Sbjct: 9 LGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAF 68
Query: 445 DTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHDNY-IVHRDIK 502
++ E+ + +E + GG L D + K + E ++ ++ L+YL + + I+HRD+K
Sbjct: 69 YSDGEISICMEHMDGGSL-DQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVK 127
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TVCGTPTYVAPEILNESGYGVKIDVWA 561
P N+LV G +K+ DFG++ +++ M + GT +Y++PE L + Y V+ D+W+
Sbjct: 128 PSNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWS 183
Query: 562 AGVILYILLCG---------------FPPFVSDTNDQD-------------------ELF 587
G+ L + G F VS+ ++ EL
Sbjct: 184 LGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELL 243
Query: 588 DDILSGQYGFPSPYWDD--ISEEAKELISHMLESNPDLRFSAEDVLDHPWLERS 639
D I++ P P S+E ++ + L+ NP R +++ HP+++R+
Sbjct: 244 DYIVNE----PPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA 293
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 85.5 bits (211), Expect = 3e-18
Identities = 88/292 (30%), Positives = 122/292 (41%), Gaps = 56/292 (19%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G+G +A V + K + ALK I G EV++L+++ H NI+ L D
Sbjct: 13 LGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDII 72
Query: 445 DTNNELYLVIELIKG---------GDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY 495
T L LV E + G+L NVK FM Q L LSY H
Sbjct: 73 HTERCLTLVFEYLDSDLKQYLDNCGNLMSM--HNVKI------FMFQ-LLRGLSYCHKRK 123
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYVAPEI-LNES 551
I+HRD+KP+NLL+ G LK+ DFGLA+ P T T Y P++ L +
Sbjct: 124 ILHRDLKPQNLLINEKG----ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGST 179
Query: 552 GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQ-------------DELFDDILSGQ---- 594
Y ID+W G ILY + G P F T + +E + I S +
Sbjct: 180 EYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRS 239
Query: 595 YGFP----------SPYWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
Y FP +P D + +L+S +L R SAE L H +
Sbjct: 240 YLFPQYRAQPLINHAPRLD---TDGIDLLSSLLLYETKSRISAEAALRHSYF 288
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 85.5 bits (211), Expect = 4e-18
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 18/261 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKS--KLLGKKQMIENEVNILRSVNHPNIIKLLD 442
IG G+F V D + A+K + S + K Q I EV L+ + HPN I+
Sbjct: 33 IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKG 92
Query: 443 EYDTNNELYLVIELIKGG--DLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
Y + +LV+E G DL + K ++ E + +T L+YLH + ++HRD
Sbjct: 93 CYLREHTAWLVMEYCLGSASDLLEVHKKPLQ--EVEIAAITHGALQGLAYLHSHNMIHRD 150
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEI---LNESGYGVKI 557
IK N+L+ G +K+ DFG A + P + GTP ++APE+ ++E Y K+
Sbjct: 151 IKAGNILLTEPG----QVKLADFGSAS-IASPANSFVGTPYWMAPEVILAMDEGQYDGKV 205
Query: 558 DVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHML 617
DVW+ G+ L PP + N L+ + S W D + + L
Sbjct: 206 DVWSLGITCIELAERKPPLF-NMNAMSALYHIAQNESPTLQSNEWSDY---FRNFVDSCL 261
Query: 618 ESNPDLRFSAEDVLDHPWLER 638
+ P R ++E++L H ++ R
Sbjct: 262 QKIPQDRPTSEELLKHMFVLR 282
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 86.3 bits (213), Expect = 4e-18
Identities = 82/319 (25%), Positives = 146/319 (45%), Gaps = 76/319 (23%)
Query: 375 LLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK---SKLLGKKQMIENEVNILRS 431
+L+RY + IG G +V YD + + A+K + + ++ K+ E+ +++
Sbjct: 22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKC 79
Query: 432 VNHPNIIKLLDEYDTN------NELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLA 485
VNH NII LL+ + ++Y+V+EL+ +L I ++ E ++ +
Sbjct: 80 VNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVI--QMELDHERMSYLLYQML 136
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQR-----VLRPMFTVCGTP 540
+ +LH I+HRD+KP N++V+ S C +K+L DFGLA+ ++ P T
Sbjct: 137 CGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKIL---DFGLARTAGTSFMMTPYVV---TR 189
Query: 541 TYVAPEILNESGYGVKIDVWAAGVILYILLCG---FPPFVSDTNDQ-------------- 583
Y APE++ GY +D+W+ G I+ ++ G FP +D DQ
Sbjct: 190 YYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG--TDHIDQWNKVIEQLGTPCPE 247
Query: 584 ------------------------DELFDDILSGQYGFP--SPYWDDISEEAKELISHML 617
++LF D+L FP S + + +A++L+S ML
Sbjct: 248 FMKKLQPTVRTYVENRPKYAGYSFEKLFPDVL-----FPADSEHNKLKASQARDLLSKML 302
Query: 618 ESNPDLRFSAEDVLDHPWL 636
+ R S ++ L HP++
Sbjct: 303 VIDASKRISVDEALQHPYI 321
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 85.9 bits (212), Expect = 4e-18
Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 56/309 (18%)
Query: 375 LLQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK---SKLLGKKQMIENEVNILRS 431
+L+RY + IG G +V YD D + A+K + + ++ K+ E+ +++
Sbjct: 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKC 72
Query: 432 VNHPNIIKLLDEYDTNNEL------YLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLA 485
VNH NII LL+ + L YLV+EL+ +L I ++ E ++ +
Sbjct: 73 VNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVI--QMELDHERMSYLLYQML 129
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP--MFTVCGTPTYV 543
+ +LH I+HRD+KP N++V+ S C +K+L DFGLA+ M T Y
Sbjct: 130 CGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR 185
Query: 544 APEILNESGYGVKIDVWAAGVIL------YILLCG-----------------FPPFVSDT 580
APE++ GY +D+W+ G I+ IL G P F+
Sbjct: 186 APEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKL 245
Query: 581 NDQDELFDDILSGQYG--FPSPYWDDI-----------SEEAKELISHMLESNPDLRFSA 627
+ + G FP + D + + +A++L+S ML +P R S
Sbjct: 246 QPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISV 305
Query: 628 EDVLDHPWL 636
++ L HP++
Sbjct: 306 DEALQHPYI 314
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 85.5 bits (211), Expect = 5e-18
Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 8/243 (3%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G GN VV +V K + A K+I + I E+ +L N P I+ +
Sbjct: 13 LGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF 72
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY-IVHRDIKP 503
++ E+ + +E + GG L + + + EE ++ ++ L+YL + + I+HRD+KP
Sbjct: 73 YSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKP 132
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TVCGTPTYVAPEILNESGYGVKIDVWAA 562
N+LV G +K+ DFG++ +++ M + GT +Y++PE L + Y V+ D+W+
Sbjct: 133 SNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSM 188
Query: 563 GVILYILLCG-FPPFVSDTNDQDELFD-DILSGQYGFPSPYWDDISEEAKELISHMLESN 620
G+ L L G +P D + + +F ++ G+ G P + + H ++S
Sbjct: 189 GLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSR 248
Query: 621 PDL 623
P +
Sbjct: 249 PAM 251
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 85.0 bits (210), Expect = 5e-18
Identities = 81/300 (27%), Positives = 126/300 (42%), Gaps = 52/300 (17%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHP 435
++ Y + +G+G +A V + K + ALK I G EV++L+ + H
Sbjct: 5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHA 64
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK---------FSEEDSKFMTQSLAS 486
NI+ L D T+ L LV F+ + K++K S + K +
Sbjct: 65 NIVTLHDIVHTDKSLTLV---------FEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILR 115
Query: 487 ALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG---TPTYV 543
L+Y H ++HRD+KP+NLL+ G LK+ DFGLA+ P T T Y
Sbjct: 116 GLAYCHRRKVLHRDLKPQNLLINERG----ELKLADFGLARAKSVPTKTYSNEVVTLWYR 171
Query: 544 APEI-LNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELF----------DDILS 592
P++ L S Y +ID+W G I + + G P F T +DEL ++
Sbjct: 172 PPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTV-EDELHLIFRLLGTPTEETWP 230
Query: 593 G--------QYGF----PSPYWDD---ISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
G Y F P P + + E EL++ L+ R SAE+ + H +
Sbjct: 231 GISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFR 290
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 85.0 bits (210), Expect = 1e-17
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 417 GKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEED 476
G++ E +ILR++NHP+II+L + N L++ K DL+ ++ + D
Sbjct: 125 GQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKT-DLYCYLAAKRNIAICD 183
Query: 477 SKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSG--CHVKVLKVGDFGLA----QRVL 530
+ +S+ A+ YLH+N I+HRDIK EN+ + G C +GDFG A
Sbjct: 184 ILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVC------LGDFGAACFPVDINA 237
Query: 531 RPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFD-D 589
+ GT APE+L YG +D+W+AG++L+ + D LF+ D
Sbjct: 238 NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATC----------HDSLFEKD 287
Query: 590 ILSG 593
L G
Sbjct: 288 GLDG 291
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 82.8 bits (204), Expect = 1e-17
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 11/206 (5%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
IG GNF V + + A+K ++ K E IL+ +HPNI++L+
Sbjct: 3 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62
Query: 445 DTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKP 503
+Y+V+EL++GGD + ++ + ++ M ++ A+ + YL + +HRD+
Sbjct: 63 TQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAA 122
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCG----TPT-YVAPEILNESGYGVKID 558
N LV VLK+ DFG+++ ++ G P + APE LN Y + D
Sbjct: 123 RNCLVTEK----NVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESD 178
Query: 559 VWAAGVILY-ILLCGFPPFVSDTNDQ 583
VW+ G++L+ G P+ + +N Q
Sbjct: 179 VWSFGILLWEAFSLGAVPYANLSNQQ 204
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 82.8 bits (205), Expect = 1e-17
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 16/193 (8%)
Query: 385 IGDGNFAVVRQ-VY--DKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLL 441
+G GNF V + VY K+++ A+K + + + K+ E +++ ++HP I++L+
Sbjct: 3 LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62
Query: 442 DEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
L LV+EL G L + K + D K + +A ++YL + VHRD+
Sbjct: 63 G-VCKGEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDL 121
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRP-----MFTVCGT-PT-YVAPEILNESGYG 554
N+L+ K+ DFG++ R L T G P + APE +N +
Sbjct: 122 AARNVLLVNR----HQAKISDFGMS-RALGAGSDYYRATTAGRWPLKWYAPECINYGKFS 176
Query: 555 VKIDVWAAGVILY 567
K DVW+ GV L+
Sbjct: 177 SKSDVWSYGVTLW 189
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 83.2 bits (206), Expect = 1e-17
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 377 QRYSVGQIIGDGNFAVVRQ-VYDKHKD--MDCALKIIDKSKLLGKKQMIENEVNILRSVN 433
+ ++G+ IG+G F V Q VY ++ + A+K ++ E I+R +
Sbjct: 6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFD 65
Query: 434 HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQS--LASALSYL 491
HP+I+KL+ T N +++V+EL G+L + N K+S + + + S L++AL+YL
Sbjct: 66 HPHIVKLIGVI-TENPVWIVMELAPLGELRSYLQVN-KYSLDLASLILYSYQLSTALAYL 123
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF---TVCGTP-TYVAPEI 547
VHRDI N+LV C +K+GDFGL++ + + + P ++APE
Sbjct: 124 ESKRFVHRDIAARNVLVSSPDC----VKLGDFGLSRYLEDESYYKASKGKLPIKWMAPES 179
Query: 548 LNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTN 581
+N + DVW GV ++ IL+ G PF N
Sbjct: 180 INFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN 214
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 83.5 bits (206), Expect = 2e-17
Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 7/212 (3%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G GN VV +V K + A K+I + I E+ +L N P I+ +
Sbjct: 13 LGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF 72
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNY-IVHRDIKP 503
++ E+ + +E + GG L + K + E+ ++ ++ L+YL + + I+HRD+KP
Sbjct: 73 YSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKP 132
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TVCGTPTYVAPEILNESGYGVKIDVWAA 562
N+LV G +K+ DFG++ +++ M + GT +Y++PE L + Y V+ D+W+
Sbjct: 133 SNILVNSRG----EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSM 188
Query: 563 GVILYILLCG-FPPFVSDTNDQDELFDDILSG 593
G+ L + G +P D + + +F + G
Sbjct: 189 GLSLVEMAIGRYPIPPPDAKELELMFGCPVEG 220
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 82.6 bits (204), Expect = 2e-17
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 16/260 (6%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
+I+G GN V + Y A+K+I + ++ I +E+ IL + P II
Sbjct: 7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYG 66
Query: 443 EYDTNNELYLVIELIKGG--DLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ N + + E + GG D++ I ++V + ++ L+YL I+HRD
Sbjct: 67 AFFVENRISICTEFMDGGSLDVYRKIPEHVLGR------IAVAVVKGLTYLWSLKILHRD 120
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TVCGTPTYVAPEILNESGYGVKIDV 559
+KP N+LV G VK+ DFG++ +++ + T GT Y+APE ++ YG+ DV
Sbjct: 121 VKPSNMLVNTRG-QVKLC---DFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDV 176
Query: 560 WAAGVILYILLCGFPPFVSDTNDQDELFD-DILSGQYGFPSPYWDD--ISEEAKELISHM 616
W+ G+ L G P+ +Q L +L P SE+ I+
Sbjct: 177 WSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQC 236
Query: 617 LESNPDLRFSAEDVLDHPWL 636
+ P R + E+++DHP++
Sbjct: 237 MRKQPKERPAPENLMDHPFI 256
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 81.2 bits (200), Expect = 4e-17
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 15/209 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
+++G GNF V + K K A+K + K +E IL+ +HPNI+KL+
Sbjct: 1 ELLGKGNFGEVFKGTLKDK-TPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIG 59
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ---SLASALSYLHDNYIVHR 499
+Y+V+EL+ GGD + K K E +K + + A+ ++YL +HR
Sbjct: 60 VCTQRQPIYIVMELVPGGDFLSFLRK--KKDELKTKQLVKFALDAAAGMAYLESKNCIHR 117
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTP----TYVAPEILNESGYGV 555
D+ N LV + VLK+ DFG++++ +++ G + APE LN Y
Sbjct: 118 DLAARNCLVGEN----NVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSS 173
Query: 556 KIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
+ DVW+ G++L+ G P+ TN Q
Sbjct: 174 ESDVWSYGILLWETFSLGVCPYPGMTNQQ 202
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 81.7 bits (201), Expect = 4e-17
Identities = 70/276 (25%), Positives = 135/276 (48%), Gaps = 29/276 (10%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNH-PNI 437
+ + +++G+G + V + A+K++D + +++ I+ E+N+L+ +H NI
Sbjct: 8 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG--DEEEEIKQEINMLKKYSHHRNI 65
Query: 438 IKLLDEYDTNN------ELYLVIELIKGGDLFDAISKNVK---FSEEDSKFMTQSLASAL 488
+ N +L+LV+E G + D I KN K EE ++ + + L
Sbjct: 66 ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLI-KNTKGNTLKEEWIAYICREILRGL 124
Query: 489 SYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAP 545
S+LH + ++HRDIK +N+L+ + +K+ DFG++ ++ R + T GTP ++AP
Sbjct: 125 SHLHQHKVIHRDIKGQNVLLTENA----EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAP 180
Query: 546 EILN-----ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
E++ ++ Y K D+W+ G+ + G PP + D + LF + S
Sbjct: 181 EVIACDENPDATYDFKSDLWSLGITAIEMAEGAPP-LCDMHPMRALFLIPRNPAPRLKSK 239
Query: 601 YWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
W S++ + I L N R + E ++ HP++
Sbjct: 240 KW---SKKFQSFIESCLVKNHSQRPTTEQLMKHPFI 272
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 80.7 bits (199), Expect = 6e-17
Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 15/200 (7%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G G + V + K + A+K + K + ++ ++ E +++ + HPN+++LL
Sbjct: 14 LGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLK-EAAVMKEIKHPNLVQLLGVC 71
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK---FMTQSLASALSYLHDNYIVHRDI 501
Y++ E + G+L D + + + E ++ +M ++SA+ YL +HRD+
Sbjct: 72 TREPPFYIITEFMTYGNLLDYLRECNR-QEVNAVVLLYMATQISSAMEYLEKKNFIHRDL 130
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTY----VAPEILNESGYGVKI 557
N LV G + ++KV DFGL++ + +T + APE L + + +K
Sbjct: 131 AARNCLV---GEN-HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 186
Query: 558 DVWAAGVILY-ILLCGFPPF 576
DVWA GV+L+ I G P+
Sbjct: 187 DVWAFGVLLWEIATYGMSPY 206
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 80.0 bits (197), Expect = 9e-17
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 12/194 (6%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHP 435
LQ+ ++G+IIG+G F V Q ++ A+K I K Q E ++ ++H
Sbjct: 5 LQKLTLGEIIGEGEFGAVLQ--GEYTGQKVAVKNI---KCDVTAQAFLEETAVMTKLHHK 59
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSL--ASALSYLHD 493
N+++LL +N LY+V+EL+ G+L + + + + + SL A + YL
Sbjct: 60 NLVRLLGVI-LHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES 118
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGY 553
+VHRD+ N+LV G V KV DFGLA+ + + APE L +
Sbjct: 119 KKLVHRDLAARNILVSEDG----VAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKF 174
Query: 554 GVKIDVWAAGVILY 567
K DVW+ GV+L+
Sbjct: 175 SSKSDVWSYGVLLW 188
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 80.3 bits (198), Expect = 1e-16
Identities = 66/280 (23%), Positives = 116/280 (41%), Gaps = 45/280 (16%)
Query: 383 QIIGDGNFA-VVRQVYDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNHPNII 438
+++G+G+F V YD D + + K +Q E+NIL+++ H NI+
Sbjct: 10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIV 69
Query: 439 KLLD--EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYI 496
K L L++E + G L D + K+ K + Q + ++YLH +
Sbjct: 70 KYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKH-KLNLAQLLLFAQQICEGMAYLHSQHY 128
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-------------PMFTVCGTPTYV 543
+HRD+ N+L++ +++K+GDFGLA+ V P+F +
Sbjct: 129 IHRDLAARNVLLDND----RLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF-------WY 177
Query: 544 APEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFD------------DIL 591
A E L E+ + DVW+ GV LY LL S +E+ ++L
Sbjct: 178 AVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELL 237
Query: 592 SGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDVL 631
P P + +E L+ + E+ R + ++
Sbjct: 238 ERGMRLPCP--KNCPQEVYILMKNCWETEAKFRPTFRSLI 275
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 83.7 bits (207), Expect = 1e-16
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNE-LYLVIELIKGGDLFDAISKNVKFSEEDS-KFMTQ 482
E + + HPNI+ LLD + L+ V E + G L + ++ + ++ + M Q
Sbjct: 28 ETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQ 87
Query: 483 SLASALSYLHDNYIVHRDIKPENLLVEMSGC--HVKVLKVGDFGL------AQRVLRPMF 534
L AL+ H+ IVHRD+KP+N++V +G H KVL DFG+ +
Sbjct: 88 VL-DALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVL---DFGIGTLLPGVRDADVATL 143
Query: 535 T----VCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFP 574
T V GTPTY APE L D++A G+I L G
Sbjct: 144 TRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQR 187
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 79.5 bits (196), Expect = 2e-16
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 13/205 (6%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G G F VV + + A+K I++ + ++ IE E ++ ++HP +++L
Sbjct: 12 LGSGQFGVVH-LGKWRAQIKVAIKAINEGAM-SEEDFIE-EAKVMMKLSHPKLVQLYGVC 68
Query: 445 DTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHDNYIVHRDIKP 503
LY+V E ++ G L + + + K S++ M Q + + YL N +HRD+
Sbjct: 69 TQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAA 128
Query: 504 ENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFT-VCGTP---TYVAPEILNESGYGVKIDV 559
N LV +G V+KV DFG+ + VL +T G + PE+ N S Y K DV
Sbjct: 129 RNCLVSSTG----VVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDV 184
Query: 560 WAAGVILY-ILLCGFPPFVSDTNDQ 583
W+ GV+++ + G PF +N +
Sbjct: 185 WSFGVLMWEVFTEGKMPFEKKSNYE 209
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 79.7 bits (197), Expect = 2e-16
Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 405 CALKIIDKSKLLGKKQMIENEVN------------ILRSVNHPNIIKLLDEYDTNNELYL 452
++ ++ KQM +L+S + P I+K + T++++++
Sbjct: 32 YKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFI 91
Query: 453 VIELIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHDNY-IVHRDIKPENLLVE 509
+EL+ D + K ++ E+ MT ++ AL YL + + ++HRD+KP N+L++
Sbjct: 92 CMELM--STCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLD 149
Query: 510 MSGCHVKVLKVGDFGLAQRVLRPMFTV--CGTPTYVAPEILN----ESGYGVKIDVWAAG 563
SG +K+ DFG++ R++ G Y+APE ++ Y ++ DVW+ G
Sbjct: 150 ASGN----VKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLG 205
Query: 564 VILYILLCGFPPFVSDTNDQD-ELFDDILSGQYGFPS-PYWDDISEEAKELISHMLESNP 621
+ L L G P+ + E+ IL Q PS P + S + + L +
Sbjct: 206 ISLVELATGQFPY--KNCKTEFEVLTKIL--QEEPPSLPPNEGFSPDFCSFVDLCLTKDH 261
Query: 622 DLRFSAEDVLDHPWLER 638
R ++L HP++ R
Sbjct: 262 RKRPKYRELLQHPFIRR 278
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 81.0 bits (200), Expect = 2e-16
Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 27/246 (10%)
Query: 327 PEHTKLKSGTTCLDASGREVPKMPTKTSVARCATATIKRRENLNIPSKLLQRYSVGQIIG 386
T + L + TS + + + R NI S L S G++
Sbjct: 55 THATDYDADEESLSPQTDVCQEPCETTSSS-DPASVV--RMQYNILSSLTPG-SEGEV-- 108
Query: 387 DGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDT 446
F + + + +K + K G+ E++IL++++H II L+ Y
Sbjct: 109 ---FVCTK--HGDEQRKKVIVKAVTGGKTPGR------EIDILKTISHRAIINLIHAYRW 157
Query: 447 NNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENL 506
+ + +V+ K DLF + ++ E + + + L AL+YLH I+HRD+K EN+
Sbjct: 158 KSTVCMVMPKYKC-DLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENI 216
Query: 507 LVEMSGCHVKVLKVGDFGLAQRVLRPMFTV-----CGTPTYVAPEILNESGYGVKIDVWA 561
++ V +GDFG A ++ T GT +PE+L Y K D+W+
Sbjct: 217 FLDEPENAV----LGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWS 272
Query: 562 AGVILY 567
AG++L+
Sbjct: 273 AGLVLF 278
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 78.4 bits (193), Expect = 3e-16
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 17/216 (7%)
Query: 385 IGDGNFAVVRQVYDKHK-DMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
+G G F VV+ Y K + D A+K+I K + + + IE E ++ ++H +++L
Sbjct: 12 LGTGQFGVVK--YGKWRGQYDVAIKMI-KEGSMSEDEFIE-EAKVMMKLSHEKLVQLYGV 67
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+Y+V E + G L + + ++ K F M + + ++YL +HRD+
Sbjct: 68 CTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLA 127
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC-GTPTYV---APEILNESGYGVKID 558
N LV+ GC +KV DFGL++ VL +T G+ V PE+L S + K D
Sbjct: 128 ARNCLVDDQGC----VKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSD 183
Query: 559 VWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSG 593
VWA GV+++ + G P+ + + E + + G
Sbjct: 184 VWAFGVLMWEVYSLGKMPY--ERFNNSETVEKVSQG 217
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 79.0 bits (195), Expect = 4e-16
Identities = 66/212 (31%), Positives = 95/212 (44%), Gaps = 42/212 (19%)
Query: 383 QIIGDGNFAVVRQV-YDKHKDMDCALKIIDKSKLLGKKQM--IENEVNILRSVNHPNIIK 439
Q +G GNF V YD +D + + K + + + E E+ IL+S+ H NI+K
Sbjct: 10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVK 69
Query: 440 LLDEYDT------NNELYLVIELIKGGDLFDAISKNVKFSEEDSKFM--TQSLASALSYL 491
Y L LV+E + G L D + K+ + + K + + + YL
Sbjct: 70 ----YKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKH-RERLDHRKLLLYASQICKGMEYL 124
Query: 492 HDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--------------RPMFTVC 537
VHRD+ N+LVE S VK+ GDFGL +VL P+F
Sbjct: 125 GSKRYVHRDLATRNILVE-SENRVKI---GDFGLT-KVLPQDKEYYKVREPGESPIF--- 176
Query: 538 GTPTYVAPEILNESGYGVKIDVWAAGVILYIL 569
+ APE L ES + V DVW+ GV+LY L
Sbjct: 177 ----WYAPESLTESKFSVASDVWSFGVVLYEL 204
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 78.0 bits (192), Expect = 6e-16
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 406 ALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDA 465
A+K + K +K+ E +++ + NHPNI+KLL N Y+++EL++GGDL
Sbjct: 30 AVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSY 89
Query: 466 ISKNVKFSEEDSKFMTQS--------LASALSYLHDNYIVHRDIKPENLLV-EMSGCHVK 516
+ ++ + +T +A YL + +HRD+ N LV E +
Sbjct: 90 L-RDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADR 148
Query: 517 VLKVGDFGLAQRVLRP-MFTVCGT---PT-YVAPEILNESGYGVKIDVWAAGVILY-ILL 570
V+K+GDFGLA+ + + + G P ++APE L + + + DVW+ GV+++ IL
Sbjct: 149 VVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILT 208
Query: 571 CGFPPFVSDTN 581
G P+ + N
Sbjct: 209 LGQQPYPALNN 219
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 78.2 bits (193), Expect = 6e-16
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 47/214 (21%)
Query: 385 IGDGNFAVVRQV-YDKHKDMDCALKIIDKSKLLGKKQMI---ENEVNILRSVNHPNIIKL 440
+G+G+F V YD D + G++Q E E+ ILR+++H NI+K
Sbjct: 12 LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71
Query: 441 --LDEYDTNNELYLVIELIKGGDLFDAISKN---------VKFSEEDSKFMTQSLASALS 489
+ E L L++E + G L D + ++ + FS + + +
Sbjct: 72 KGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQ--------ICKGMD 123
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ-----------RVLR--PMFTV 536
YL +HRD+ N+LVE ++K+ DFGLA+ + P+F
Sbjct: 124 YLGSQRYIHRDLAARNILVE----SEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIF-- 177
Query: 537 CGTPTYVAPEILNESGYGVKIDVWAAGVILYILL 570
+ APE L S + DVW+ GV LY L
Sbjct: 178 -----WYAPECLRTSKFSSASDVWSFGVTLYELF 206
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 77.4 bits (191), Expect = 1e-15
Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 385 IGDGNFAVV-----RQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
+G G+F +V + V + A+K ++++ + ++ NE ++++ N ++++
Sbjct: 14 LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF----------MTQSLASALS 489
LL T +V+EL+ GDL + +E + M +A ++
Sbjct: 74 LLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA 133
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV-----LRP----MFTVCGTP 540
YL VHRD+ N +V +K+GDFG+ + + R + V
Sbjct: 134 YLAAKKFVHRDLAARNCMVA----EDLTVKIGDFGMTRDIYETDYYRKGGKGLLPV---- 185
Query: 541 TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
++APE L + + K DVW+ GV+L+ + P+ +N++
Sbjct: 186 RWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE 229
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 76.3 bits (188), Expect = 2e-15
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 39/216 (18%)
Query: 385 IGDGNFAVVRQ---VYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKL- 440
+GDG+F VVR+ K + A+K + KL E I+ S++H N+I+L
Sbjct: 3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLY 62
Query: 441 ---LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDS---KFMTQSLASALSYLHDN 494
L L +V EL G L D + K+ S + Q +A+ + YL
Sbjct: 63 GVVLTH-----PLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQ-IANGMRYLESK 116
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV------------LRPMFTVCGTPTY 542
+HRD+ N+L+ +K+GDFGL + + L+ F C
Sbjct: 117 RFIHRDLAARNILLASD----DKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWC----- 167
Query: 543 VAPEILNESGYGVKIDVWAAGVILYILLC-GFPPFV 577
APE L + DVW GV L+ + G P+
Sbjct: 168 -APESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWA 202
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 75.1 bits (185), Expect = 5e-15
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 371 IPSKLLQRYSVGQIIGDGNFAVVRQ-VYDKHKDMDCALKII-DKSKLLGKKQMIENEVNI 428
I SK L+ +G IG G F V Y K A+K + D S Q E ++
Sbjct: 3 INSKELK---LGATIGKGEFGDVMLGDYRGQK---VAVKCLKDDSTA---AQAFLAEASV 53
Query: 429 LRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI---SKNVKFSEEDSKFMTQSLA 485
+ ++ HPN+++LL N LY+V E + G L D + + V + F +
Sbjct: 54 MTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGF-ALDVC 112
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT-YVA 544
+ YL + VHRD+ N+LV V KV DFGLA+ P + A
Sbjct: 113 EGMEYLEEKNFVHRDLAARNVLVSEDL----VAKVSDFGLAKEA-SQGQDSGKLPVKWTA 167
Query: 545 PEILNESGYGVKIDVWAAGVILY 567
PE L E + K DVW+ G++L+
Sbjct: 168 PEALREKKFSTKSDVWSFGILLW 190
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 75.2 bits (185), Expect = 7e-15
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 371 IPSKLLQRYSVGQIIGDGNFAVVRQVYDKHKD-----MDCALKIIDKSKLLGKKQMIENE 425
+P + + +G G F V + + +D + A+K + +S + E
Sbjct: 3 VPRDSITL---LRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLME 59
Query: 426 VNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN-------VKFSEEDSK 478
I+ NH NI++L+ ++++EL+ GGDL + +N + +D
Sbjct: 60 ALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLL 119
Query: 479 FMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR------- 531
F + +A YL +N+ +HRDI N L+ G +V K+ DFG+A+ + R
Sbjct: 120 FCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPG-RVAKIADFGMARDIYRASYYRKG 178
Query: 532 --PMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
M + P PE + + K DVW+ GV+L+ I G+ P+ TN +
Sbjct: 179 GRAMLPIKWMP----PEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE 229
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 75.5 bits (185), Expect = 9e-15
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 33/251 (13%)
Query: 385 IGDGNFAVVRQVY--DKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
+G G + V + D D D ALK I+ + G E+ +LR + HPN+I L
Sbjct: 9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGT---GISMSACREIALLRELKHPNVISLQK 65
Query: 443 EY--DTNNELYLVIE--------LIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH 492
+ + +++L+ + +IK A K V+ K + + + YLH
Sbjct: 66 VFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH 125
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV---LRPMFT---VCGTPTYVAPE 546
N+++HRD+KP N+LV G +K+ D G A+ L+P+ V T Y APE
Sbjct: 126 ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE 185
Query: 547 -ILNESGYGVKIDVWAAGVILYILLCGFPPF--------VSDTNDQDELFDDILSGQYGF 597
+L Y ID+WA G I LL P F S+ D+L D + GF
Sbjct: 186 LLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL--DRIFNVMGF 243
Query: 598 PSPY-WDDISE 607
P+ W+DI +
Sbjct: 244 PADKDWEDIKK 254
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 74.4 bits (183), Expect = 2e-14
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 378 RYSVGQIIGDGNFAVVRQ--VYDKHKD---MDCALKIIDKSKLLGKKQMIENEVNILRSV 432
S G+ +G G F V + Y K M A+K++ + +++ + +E+ I+ +
Sbjct: 36 NLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHL 95
Query: 433 -NHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN--VKFSEEDSKFMTQSLASALS 489
NH NI+ LL + ++ E GDL + + + + ED + +A ++
Sbjct: 96 GNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMA 155
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM-FTVCGTP----TYVA 544
+L +HRD+ N+L+ H K++K+ DFGLA+ ++ + V G ++A
Sbjct: 156 FLASKNCIHRDLAARNVLL----THGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMA 211
Query: 545 PEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
PE + Y + DVW+ G++L+ I G P+
Sbjct: 212 PESIFNCVYTFESDVWSYGILLWEIFSLGSNPY 244
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 73.9 bits (181), Expect = 2e-14
Identities = 67/272 (24%), Positives = 135/272 (49%), Gaps = 29/272 (10%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNH-PNIIKLL 441
+++G+G + V + A+K++D ++ +++ I+ E+N+L+ +H NI
Sbjct: 22 EVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE--DEEEEIKLEINMLKKYSHHRNIATYY 79
Query: 442 DEY------DTNNELYLVIELIKGGDLFDAISKNVK---FSEEDSKFMTQSLASALSYLH 492
+ +++L+LV+E G + D + KN K E+ ++ + + L++LH
Sbjct: 80 GAFIKKSPPGHDDQLWLVMEFCGAGSVTDLV-KNTKGNALKEDWIAYICREILRGLAHLH 138
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM---FTVCGTPTYVAPEILN 549
+ ++HRDIK +N+L+ + +K+ DFG++ ++ R + T GTP ++APE++
Sbjct: 139 AHKVIHRDIKGQNVLLTENA----EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIA 194
Query: 550 -----ESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDD 604
++ Y + D+W+ G+ + G PP + D + LF + S W
Sbjct: 195 CDENPDATYDYRSDIWSLGITAIEMAEGAPP-LCDMHPMRALFLIPRNPPPKLKSKKW-- 251
Query: 605 ISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
S++ + I L N R S E +L HP++
Sbjct: 252 -SKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI 282
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 76.1 bits (187), Expect = 2e-14
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKK--QMIENEVNILRSVNHPNIIKLLD 442
I G F V K+ A+K++ K+ ++ K ++ E + L P I+ L
Sbjct: 12 ISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYY 71
Query: 443 EYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
+ N +YLV+E + GGD+ + F EE + +A AL YLH + I+HRD+K
Sbjct: 72 SLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLK 131
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCGTPTYVAPEILN 549
P+N+L+ G H+K+ DFGL++ L M + TP+ P+
Sbjct: 132 PDNMLISNEG-HIKLT---DFGLSKVTLNRELNMMDILTTPSMAKPKNDY 177
Score = 63.0 bits (153), Expect = 3e-10
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 538 GTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGF 597
GTP Y+APE+L +G +D WA GV L+ L G PPF +T Q +F +IL+
Sbjct: 542 GTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQ--VFQNILNRD--I 597
Query: 598 PSPYWDD-ISEEAKELISHMLESNPDLRFSAEDVLDHP 634
P P ++ +S A+ I +L +P R +++ HP
Sbjct: 598 PWPEGEEKLSVNAQNAIEILLTMDPTKRAGLKELKQHP 635
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 72.8 bits (179), Expect = 3e-14
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNV--KFSEEDSKFMTQ 482
E I++ + HP +I+L +Y+V EL+K G L + + M
Sbjct: 51 EAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAA 110
Query: 483 SLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---------PM 533
+AS ++YL +HRD+ N+LV + + KV DFGLA RV++
Sbjct: 111 QVASGMAYLEAQNYIHRDLAARNVLVGENN----ICKVADFGLA-RVIKEDIYEAREGAK 165
Query: 534 FTVCGTPTYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
F + + APE + + +K DVW+ G++L I+ G P+ TN +
Sbjct: 166 FPI----KWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE 212
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 73.1 bits (179), Expect = 4e-14
Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 33/261 (12%)
Query: 384 IIGDGNFA-VVRQVYDKHKD-MDCALKIIDKSKLLGKKQMIENEVNILRSV-NHPNIIKL 440
+IG+GNF V+R + K M+ A+K++ + + E+ +L + +HPNII L
Sbjct: 9 VIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINL 68
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ-----------------S 483
L + LY+ IE G+L D + K+ + E D F +
Sbjct: 69 LGACENRGYLYIAIEYAPYGNLLDFLRKS-RVLETDPAFAKEHGTASTLTSQQLLQFASD 127
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ-RVLRPMFTVCGTPT- 541
+A+ + YL + +HRD+ N+LV + K+ DFGL++ + T+ P
Sbjct: 128 VATGMQYLSEKQFIHRDLAARNVLVGEN----LASKIADFGLSRGEEVYVKKTMGRLPVR 183
Query: 542 YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
++A E LN S Y K DVW+ GV+L+ I+ G P+ T EL++ + G Y P
Sbjct: 184 WMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC--AELYEKLPQG-YRMEKP 240
Query: 601 YWDDISEEAKELISHMLESNP 621
+ +E EL+ P
Sbjct: 241 --RNCDDEVYELMRQCWRDRP 259
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 72.2 bits (177), Expect = 5e-14
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF----- 479
E N+++ + HP +++L T +Y++ E ++ G L D + + E K
Sbjct: 51 EANLMKQLQHPRLVRLY-AVVTQEPIYIITEYMENGSLVDFLK-----TPEGIKLTINKL 104
Query: 480 --MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV- 536
M +A ++++ +HRD++ N+LV + C K+ DFGLA+ + +T
Sbjct: 105 IDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLC----CKIADFGLARLIEDNEYTAR 160
Query: 537 --CGTP-TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILS 592
P + APE +N + +K DVW+ G++L I+ G P+ TN E+ ++
Sbjct: 161 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN--PEVIQNLER 218
Query: 593 GQYGFPSPYWDDISEEAKELISHMLESNPDLR 624
G Y P P D+ EE EL+ + P+ R
Sbjct: 219 G-YRMPRP--DNCPEELYELMRLCWKEKPEER 247
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 72.8 bits (179), Expect = 5e-14
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 37/272 (13%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQ---MIENEVNILRSVNHPNIIKLL 441
IG G F V ++ K A+K I +S + K+Q +++ +V ++RS + P I+K
Sbjct: 12 IGRGAFGTVNKMLHKPSGTIMAVKRI-RSTVDEKEQKRLLMDLDV-VMRSSDCPYIVKFY 69
Query: 442 DEYDTNNELYLVIELIKGGDL-FDAISK------NVKFSEEDSKFMTQSLASALSYLHDN 494
+ ++ +EL+ D+ D K EE + + AL+YL +
Sbjct: 70 GALFREGDCWICMELM---DISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE 126
Query: 495 Y-IVHRDIKPENLLVEMSGCHVKVLKVGDFG----LAQRVLRPMFTVCGTPTYVAPEILN 549
I+HRD+KP N+L++ +G +K+ DFG L + + C P Y+APE ++
Sbjct: 127 LKIIHRDVKPSNILLDRNGN----IKLCDFGISGQLVDSIAKTRDAGC-RP-YMAPERID 180
Query: 550 ES---GYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQYGFP----SPYW 602
S GY V+ DVW+ G+ LY + G P+ + +FD + G P +
Sbjct: 181 PSARDGYDVRSDVWSLGITLYEVATGKFPY----PKWNSVFDQLTQVVKGDPPILSNSEE 236
Query: 603 DDISEEAKELISHMLESNPDLRFSAEDVLDHP 634
+ S I+ L + R +++L+HP
Sbjct: 237 REFSPSFVNFINLCLIKDESKRPKYKELLEHP 268
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 72.0 bits (176), Expect = 5e-14
Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 31/253 (12%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEY 444
+G G F V Y + A+K + + Q E N+++++ H +++L
Sbjct: 14 LGAGQFGEVWMGY-YNNSTKVAVKTLKPGTM--SVQAFLEEANLMKTLQHDKLVRLYAVV 70
Query: 445 DTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFM-------TQSLASALSYLHDNYIV 497
+Y++ E + G L D + S+E K + + +A ++Y+ +
Sbjct: 71 TKEEPIYIITEYMAKGSLLDFLK-----SDEGGKVLLPKLIDFSAQIAEGMAYIERKNYI 125
Query: 498 HRDIKPENLLV-EMSGCHVKVLKVGDFGLAQRVLRPMFTV---CGTP-TYVAPEILNESG 552
HRD++ N+LV E C K+ DFGLA+ + +T P + APE +N
Sbjct: 126 HRDLRAANVLVSESLMC-----KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS 180
Query: 553 YGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKE 611
+ +K DVW+ G++LY I+ G P+ +N D + + Q G+ P ++ +E +
Sbjct: 181 FTIKSDVWSFGILLYEIVTYGKIPYPGMSNS-----DVMSALQRGYRMPRMENCPDELYD 235
Query: 612 LISHMLESNPDLR 624
++ + + R
Sbjct: 236 IMKTCWKEKAEER 248
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 72.3 bits (177), Expect = 6e-14
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 29/271 (10%)
Query: 385 IGDGNFAVVRQV-YDKHKDMDCALKIIDKSKLLGKKQMIEN---EVNILRSVNHPNIIKL 440
+G+G+F V YD D + K I + E+ ILR++ H NI+K
Sbjct: 12 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71
Query: 441 --LDEYDTNNELYLVIELIKGGDLFDAISKNVKFS--EEDSKFMTQSLASALSYLHDNYI 496
+ D N + L++E + G L + + +N ++ K+ Q + + YL
Sbjct: 72 KGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQ-ICKGMDYLGSRQY 130
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTV---CGTPTY-VAPEILNE 550
VHRD+ N+LVE +K+GDFGL + + + +TV +P + APE L +
Sbjct: 131 VHRDLAARNVLVESEH----QVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQ 186
Query: 551 SGYGVKIDVWAAGVILYILL--CG--------FPPFVSDTNDQDELFDDILSGQYGFPSP 600
S + + DVW+ GV LY LL C F + T+ Q + + + G P
Sbjct: 187 SKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLP 246
Query: 601 YWDDISEEAKELISHMLESNPDLRFSAEDVL 631
+ EE +L+ E P R + ++++
Sbjct: 247 RPPNCPEEVYQLMRKCWEFQPSKRTTFQNLI 277
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 71.6 bits (175), Expect = 8e-14
Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 33/261 (12%)
Query: 384 IIGDGNFA-VVRQVYDKHK-DMDCALKIIDKSKLLGKKQMIENEVNILRSV-NHPNIIKL 440
+IG+GNF V++ K MD A+K + + + E+ +L + +HPNII L
Sbjct: 2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 61
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-----------------MTQS 483
L + LYL IE G+L D + K+ + E D F
Sbjct: 62 LGACEHRGYLYLAIEYAPHGNLLDFLRKS-RVLETDPAFAIANSTASTLSSQQLLHFAAD 120
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ-RVLRPMFTVCGTPT- 541
+A + YL +HRD+ N+LV + K+ DFGL++ + + T+ P
Sbjct: 121 VARGMDYLSQKQFIHRDLAARNILVGENYVA----KIADFGLSRGQEVYVKKTMGRLPVR 176
Query: 542 YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
++A E LN S Y DVW+ GV+L+ I+ G P+ T EL++ + G Y P
Sbjct: 177 WMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQG-YRLEKP 233
Query: 601 YWDDISEEAKELISHMLESNP 621
+ +E +L+ P
Sbjct: 234 --LNCDDEVYDLMRQCWREKP 252
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 72.0 bits (176), Expect = 1e-13
Identities = 82/272 (30%), Positives = 124/272 (45%), Gaps = 35/272 (12%)
Query: 384 IIGDGNFAVVRQVYDKHKD---MDCALKIIDKSKLLGKKQMIENEVNIL-RSVNHPNIIK 439
+IG+GNF V + K KD MD A+K + + + E+ +L + +HPNII
Sbjct: 14 VIGEGNFGQVLKARIK-KDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 72
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-MTQSLASALS--------- 489
LL + LYL IE G+L D + K+ + E D F + S AS LS
Sbjct: 73 LLGACEHRGYLYLAIEYAPHGNLLDFLRKS-RVLETDPAFAIANSTASTLSSQQLLHFAA 131
Query: 490 -------YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQ-RVLRPMFTVCGTPT 541
YL +HRD+ N+LV + V K+ DFGL++ + + T+ P
Sbjct: 132 DVARGMDYLSQKQFIHRDLAARNILVGEN----YVAKIADFGLSRGQEVYVKKTMGRLPV 187
Query: 542 -YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPS 599
++A E LN S Y DVW+ GV+L+ I+ G P+ T EL++ + G Y
Sbjct: 188 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQG-YRLEK 244
Query: 600 PYWDDISEEAKELISHMLESNPDLRFSAEDVL 631
P + +E +L+ P R S +L
Sbjct: 245 PL--NCDDEVYDLMRQCWREKPYERPSFAQIL 274
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 71.3 bits (174), Expect = 2e-13
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 33/251 (13%)
Query: 385 IGDGNFAVVRQVY--DKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
+G G + V + D + + ALK I+ + G E+ +LR + HPN+I L
Sbjct: 9 VGRGTYGHVYKAKRKDGKDEKEYALKQIEGT---GISMSACREIALLRELKHPNVIALQK 65
Query: 443 EY--DTNNELYLVIE--------LIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH 492
+ ++ +++L+ + +IK A K ++ K + + + YLH
Sbjct: 66 VFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH 125
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV---LRPMFT---VCGTPTYVAPE 546
N+++HRD+KP N+LV G +K+ D G A+ L+P+ V T Y APE
Sbjct: 126 ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE 185
Query: 547 -ILNESGYGVKIDVWAAGVILYILLCGFPPF--------VSDTNDQDELFDDILSGQYGF 597
+L Y ID+WA G I LL P F S+ D+L D I S GF
Sbjct: 186 LLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQL-DRIFS-VMGF 243
Query: 598 PSPY-WDDISE 607
P+ W+DI +
Sbjct: 244 PADKDWEDIRK 254
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 70.0 bits (171), Expect = 3e-13
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 383 QIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
Q IG G F V + ++ A+K I Q E +++ + H N+++LL
Sbjct: 12 QTIGKGEFGDV--MLGDYRGNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLG 66
Query: 443 E-YDTNNELYLVIELIKGGDLFDAI---SKNVKFSEEDSKFMTQSLASALSYLHDNYIVH 498
+ LY+V E + G L D + ++V + KF + + A+ YL N VH
Sbjct: 67 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-SLDVCEAMEYLEANNFVH 125
Query: 499 RDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKID 558
RD+ N+LV V KV DFGL + T + APE L E + K D
Sbjct: 126 RDLAARNVLVSED----NVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSD 181
Query: 559 VWAAGVILY 567
VW+ G++L+
Sbjct: 182 VWSFGILLW 190
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 69.3 bits (170), Expect = 1e-12
Identities = 66/288 (22%), Positives = 113/288 (39%), Gaps = 59/288 (20%)
Query: 399 KHKDMD--CALKIID-KSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIE 455
KHK + A+K I+ S ++++ E+ R + HPNI+ + + ++ELY+V
Sbjct: 20 KHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSP 79
Query: 456 LIKGGDLFDAISKNVK--FSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGC 513
L+ G D + + E F+ + + +AL Y+H +HR +K ++L+ G
Sbjct: 80 LMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDG- 138
Query: 514 HVKVLKVGDFGLAQRVLRPMF-------TVCGTPTY-------VAPEIL--NESGYGVKI 557
KV GL R M V P ++PE+L N GY K
Sbjct: 139 -----KVVLSGL--RYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKS 191
Query: 558 DVWAAGVILYILLCGFPPFVSDTN------------------------DQDELFDDILSG 593
D+++ G+ L G PF D +D + S
Sbjct: 192 DIYSVGITACELANGHVPF-KDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSN 250
Query: 594 QYGFPS-----PYWDDISEEAKELISHMLESNPDLRFSAEDVLDHPWL 636
++ PY SE + + L+ +P+ R SA +L+H +
Sbjct: 251 EHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFF 298
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 68.5 bits (167), Expect = 1e-12
Identities = 60/252 (23%), Positives = 119/252 (47%), Gaps = 22/252 (8%)
Query: 385 IGDGNFAVV-RQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
+G G F V Y+KH + A+K + K + + + E N+++++ H ++KL
Sbjct: 14 LGAGQFGEVWMATYNKHTKV--AVKTM-KPGSMSVEAFLA-EANVMKTLQHDKLVKL-HA 68
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFM--TQSLASALSYLHDNYIVHRDI 501
T +Y++ E + G L D + + + K + + +A ++++ +HRD+
Sbjct: 69 VVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL 128
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV---CGTP-TYVAPEILNESGYGVKI 557
+ N+LV V K+ DFGLA+ + +T P + APE +N + +K
Sbjct: 129 RAANILVSA----SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKS 184
Query: 558 DVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHM 616
DVW+ G++L I+ G P+ +N + I + + G+ P ++ EE ++
Sbjct: 185 DVWSFGILLMEIVTYGRIPYPGMSNPE-----VIRALERGYRMPRPENCPEELYNIMMRC 239
Query: 617 LESNPDLRFSAE 628
++ P+ R + E
Sbjct: 240 WKNRPEERPTFE 251
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 68.5 bits (167), Expect = 1e-12
Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 48/287 (16%)
Query: 381 VGQIIGDGNFAVVRQVYDKHKD-----MDCALKIIDKSKLLGKKQMIENEVNILRSVNHP 435
+G+ +G+G F V + A+K++ ++ + + + +E N+L+ VNHP
Sbjct: 4 LGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHP 63
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDL--FDAISKNVKFSEEDSKFMTQS---------- 483
++IKL + L L++E K G L F S+ V S S S
Sbjct: 64 HVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERA 123
Query: 484 ------------LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR 531
++ + YL + +VHRD+ N+LV + +K+ DFGL++ V
Sbjct: 124 LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEG----RKMKISDFGLSRDVYE 179
Query: 532 PMFTVCGTP-----TYVAPEILNESGYGVKIDVWAAGVILY--ILLCGFP-PFVSDTNDQ 583
V + ++A E L + Y + DVW+ GV+L+ + L G P P ++
Sbjct: 180 EDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER-- 237
Query: 584 DELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDV 630
LF+ + +G Y P ++ SEE L+ + PD R + D+
Sbjct: 238 --LFNLLKTG-YRMERP--ENCSEEMYNLMLTCWKQEPDKRPTFADI 279
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 67.4 bits (165), Expect = 2e-12
Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 36/273 (13%)
Query: 385 IGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNI-LRSVNHPNIIKLLDE 443
+G G + VV ++ A+K I + +++ + +++I +RSV+ P +
Sbjct: 9 LGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGA 68
Query: 444 YDTNNELYLVIELIKGG-DLF--DAISKNVKFSEEDSKFMTQSLASALSYLHDNY-IVHR 499
++++ +E++ D F K + E+ + S+ AL YLH ++HR
Sbjct: 69 LFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHR 128
Query: 500 DIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF-TV-CGTPTYVAPE----ILNESGY 553
D+KP N+L+ +G VK+ DFG++ ++ + T+ G Y+APE LN+ GY
Sbjct: 129 DVKPSNVLINRNG-QVKLC---DFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGY 184
Query: 554 GVKIDVWAAGVILYILLCG-FP------PFVSDTNDQDELFDDILSGQYGFPSPYW--DD 604
VK DVW+ G+ + L G FP PF + ++ PSP +
Sbjct: 185 DVKSDVWSLGITMIELATGRFPYDSWKTPF--------QQLKQVVEE----PSPQLPAEK 232
Query: 605 ISEEAKELISHMLESNPDLRFSAEDVLDHPWLE 637
S E ++ ++ L+ N R + ++L HP+ E
Sbjct: 233 FSPEFQDFVNKCLKKNYKERPNYPELLQHPFFE 265
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 69.0 bits (168), Expect = 3e-12
Identities = 65/263 (24%), Positives = 108/263 (41%), Gaps = 44/263 (16%)
Query: 334 SGTTCLDASGREVPKMPTK-TSVARCATATIKRRENLNIPSKLLQRYSVGQIIGDGNF-- 390
SG DAS + + P A A +K + + L + V + G F
Sbjct: 110 SGAEDSDASHLDFDEAPPDAAGPVPLAQAKLKHDD------EFLAHFRVIDDLPAGAFGK 163
Query: 391 ----AVVRQVYD--KHKDMDCALKIIDKSKLLGKKQM---------IENEVNILRSVNHP 435
A+ + + ++ + K + L K++ +ENE+ L +NH
Sbjct: 164 IFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHE 223
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAIS--KNVKFSEEDSKFMTQS------LASA 487
NI+K+ + + Y++ + FD S + F +D + Q+ L A
Sbjct: 224 NILKIEEILRSEANTYMITQKYD----FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCA 279
Query: 488 LSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM----FTVCGTPTYV 543
+ Y+HD ++HRDIK EN+ + G V +GDFG A + + GT
Sbjct: 280 VEYIHDKKLIHRDIKLENIFLNCDGKIV----LGDFGTAMPFEKEREAFDYGWVGTVATN 335
Query: 544 APEILNESGYGVKIDVWAAGVIL 566
+PEIL GY D+W+ G+IL
Sbjct: 336 SPEILAGDGYCEITDIWSCGLIL 358
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 66.4 bits (162), Expect = 3e-12
Identities = 69/256 (26%), Positives = 106/256 (41%), Gaps = 41/256 (16%)
Query: 393 VRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYL 452
V V D LK + KS + E I V PN++ L + + ++L
Sbjct: 9 VLLVMDTRTQQTFILKGLRKSSEYSR----ERLTIIPHCV--PNMVCLHKYIVSEDSVFL 62
Query: 453 VIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSG 512
V++ +GG L+ ISK + EE K + AL LH IV RD+ P N+L++ G
Sbjct: 63 VLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRG 122
Query: 513 CHVKVLKVGDFGLAQRVLRPMFTVCGTPT---YVAPEILNESGYGVKIDVWAAGVILYIL 569
H+++ + + + G Y APE+ S D W+ G IL+ L
Sbjct: 123 -HIQLTYFSRWSEVED------SCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFEL 175
Query: 570 LCGFP-----PFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLR 624
L G P +T+ + P W +SEEA+ L+ +L+ NP R
Sbjct: 176 LTGKTLVECHPSGINTHTTLNI-------------PEW--VSEEARSLLQQLLQFNPTER 220
Query: 625 FSA-----EDVLDHPW 635
A ED+ HP+
Sbjct: 221 LGAGVAGVEDIKSHPF 236
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 66.8 bits (163), Expect = 4e-12
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 32/241 (13%)
Query: 378 RYSVGQIIGDGNFAVV---RQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNH 434
+ ++IG G F V R +++ A+K + +++ +E +I+ +H
Sbjct: 5 CIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDH 64
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-------MTQSLASA 487
PNII L + + +V E ++ G L + K+ D +F M + +AS
Sbjct: 65 PNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKH------DGQFTVIQLVGMLRGIASG 118
Query: 488 LSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR----PMFTVCGTPT-- 541
+ YL D VHRD+ N+LV + V KV DFGL+ RVL +T G
Sbjct: 119 MKYLSDMGYVHRDLAARNILVNSN----LVCKVSDFGLS-RVLEDDPEAAYTTRGGKIPI 173
Query: 542 -YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPS 599
+ APE + + DVW+ G++++ ++ G P+ +N QD + I G Y P+
Sbjct: 174 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN-QD-VIKAIEEG-YRLPA 230
Query: 600 P 600
P
Sbjct: 231 P 231
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 69.0 bits (169), Expect = 4e-12
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 37/233 (15%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDK----SKLLGKKQMIENEVNILRS 431
+QRY + ++IG G V YD ALK I + + LL K+ + E I
Sbjct: 1 MQRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFL--REAKIAAD 58
Query: 432 VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ--SLASALS 489
+ HP I+ + + +Y + I+G L ++ K+V E SK + + S+ + LS
Sbjct: 59 LIHPGIVPVYSICSDGDPVYYTMPYIEGYTL-KSLLKSVWQKESLSKELAEKTSVGAFLS 117
Query: 490 ----------YLHDNYIVHRDIKPENLLVEMSGCHVKV-----------------LKVGD 522
Y+H ++HRD+KP+N+L+ + G V + + V +
Sbjct: 118 IFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDE 177
Query: 523 FGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFP 574
+ + + GTP Y+APE L D++A GVILY +L FP
Sbjct: 178 RNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP 230
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 68.4 bits (167), Expect = 4e-12
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 424 NEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMTQ 482
+E +LR ++HP ++ LLD LV+ + DL+ + ++ + +
Sbjct: 209 HEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRS-DLYTYLGARLRPLGLAQVTAVAR 267
Query: 483 SLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA-----QRVLRPMFTVC 537
L SA+ Y+H I+HRDIK EN+LV + + +GDFG A + +
Sbjct: 268 QLLSAIDYIHGEGIIHRDIKTENVLVNGP----EDICLGDFGAACFARGSWSTPFHYGIA 323
Query: 538 GTPTYVAPEILNESGYGVKIDVWAAGVILY 567
GT APE+L Y +D+W+AG++++
Sbjct: 324 GTVDTNAPEVLAGDPYTPSVDIWSAGLVIF 353
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 66.2 bits (162), Expect = 6e-12
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 19/232 (8%)
Query: 380 SVGQIIGDGNFAVV---RQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
++ ++IG G F V R K++D A+K + ++ E +I+ +HPN
Sbjct: 7 TIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPN 66
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKN-VKFSEEDSKFMTQSLASALSYLHDNY 495
II+L + + ++ E ++ G L + +N KF+ M + +AS + YL +
Sbjct: 67 IIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMN 126
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR---PMFTVCG--TPT-YVAPEILN 549
VHRD+ N+LV + V KV DFGL+ R L +T G P + APE +
Sbjct: 127 YVHRDLAARNILVNSN----LVCKVSDFGLS-RRLEDSEATYTTKGGKIPIRWTAPEAIA 181
Query: 550 ESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
+ DVW+ G++++ ++ G P+ +N QD + + G Y P P
Sbjct: 182 YRKFTSASDVWSFGIVMWEVMSYGERPYWDMSN-QDVI-KAVEDG-YRLPPP 230
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 64.6 bits (158), Expect = 1e-11
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF----- 479
E I++ + H +++L +Y+V E + G L D + S E K
Sbjct: 51 EAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLK-----SGEGKKLRLPQL 105
Query: 480 --MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC 537
M +A ++YL +HRD+ N+LV + V K+ DFGLA+ + +T
Sbjct: 106 VDMAAQIAEGMAYLESRNYIHRDLAARNILVGEN----LVCKIADFGLARLIEDDEYTAR 161
Query: 538 -GT--PT-YVAPEILNESGYGVKIDVWAAGVILY 567
G P + APE N + +K DVW+ G++L
Sbjct: 162 EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLT 195
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 63.4 bits (154), Expect = 5e-11
Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 23/224 (10%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ-- 482
EV R +NHPN+++ L + + LV+E GDL + + N + ++
Sbjct: 45 EVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQR 104
Query: 483 ---SLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGT 539
+AS L +LH +H D+ N + +K+GD+GLA + +
Sbjct: 105 MACEVASGLLWLHQADFIHSDLALRNCQL----TADLSVKIGDYGLALEQYPEDYYITKD 160
Query: 540 PTYV-----APEILNESGYGVKI-------DVWAAGVILYILL-CGFPPFVSDTNDQDEL 586
V APE++ G + ++W+ GV ++ L P+ D +D+ L
Sbjct: 161 CHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPY-PDLSDEQVL 219
Query: 587 FDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDV 630
+ P P D + + +P+ R +AE+V
Sbjct: 220 KQVVREQDIKLPKPQLDLKYSDRWYEVMQFCWLDPETRPTAEEV 263
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 63.5 bits (154), Expect = 5e-11
Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 32/278 (11%)
Query: 377 QRYSVGQIIGDGNFAVV-----RQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRS 431
++ ++ + +G G+F +V + V + A+K ++++ + ++ NE ++++
Sbjct: 6 EKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 65
Query: 432 VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-----------M 480
N ++++LL +++EL+ GDL + ++++ E++ M
Sbjct: 66 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL-RSLRPEMENNPVQAPPSLKKMIQM 124
Query: 481 TQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTP 540
+A ++YL+ N VHRD+ N +V +K+GDFG+ + + + G
Sbjct: 125 AGEIADGMAYLNANKFVHRDLAARNCMVAED----FTVKIGDFGMTRDIYETDYYRKGGK 180
Query: 541 -----TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQ 594
+++PE L + + DVW+ GV+L+ I P+ +N+Q F ++ G
Sbjct: 181 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRF--VMEGG 238
Query: 595 YGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDVLD 632
P D+ + EL+ + NP +R S +++
Sbjct: 239 L-LDKP--DNCPDMLFELMRMCWQYNPKMRPSFLEIIS 273
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 63.1 bits (153), Expect = 6e-11
Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 32/201 (15%)
Query: 385 IGDGNFAVVRQVYDKHKDMD--CALKII--DKSKLLGKKQMIENEVNILRSVNHPNIIKL 440
+G GNF V++ K K + A+KI+ D + K +++ E N+++ +++P I+++
Sbjct: 3 LGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLR-EANVMQQLDNPYIVRM 61
Query: 441 LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRD 500
+ + + LV+EL + G L + KN +E++ + ++ + YL + VHRD
Sbjct: 62 IGICEAES-WMLVMELAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRD 120
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLR--------------PMFTVCGTPTYVAPE 546
+ N+L+ K+ DFGL+ + L P+ + APE
Sbjct: 121 LAARNVLLVTQ----HYAKISDFGLS-KALGADENYYKAKTHGKWPV-------KWYAPE 168
Query: 547 ILNESGYGVKIDVWAAGVILY 567
+N + K DVW+ GV+++
Sbjct: 169 CMNYYKFSSKSDVWSFGVLMW 189
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 62.5 bits (152), Expect = 1e-10
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 28/209 (13%)
Query: 383 QIIGDGNFAVV--RQVYDKHKDMDC---ALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
+ +G+G F V + Y + D A+K + ++ ++ E E +L + H NI
Sbjct: 11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENI 70
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLF--------DAI------SKNVKFSEEDSKFMTQS 483
+K + +V E ++ GDL DA S + + +
Sbjct: 71 VKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQ 130
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT-- 541
+AS + YL + VHRD+ N LV G + V+K+GDFG+++ V + G T
Sbjct: 131 IASGMVYLASQHFVHRDLATRNCLV---GYDL-VVKIGDFGMSRDVYTTDYYRVGGHTML 186
Query: 542 ---YVAPEILNESGYGVKIDVWAAGVILY 567
++ PE + + + DVW+ GV+L+
Sbjct: 187 PIRWMPPESIMYRKFTTESDVWSFGVVLW 215
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 62.4 bits (152), Expect = 1e-10
Identities = 54/203 (26%), Positives = 104/203 (51%), Gaps = 23/203 (11%)
Query: 382 GQIIGDGNFAVVRQVY-----DKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
+++G G F V + +K K + A+K++ + + I +E ++ SV+HP+
Sbjct: 12 IKVLGSGAFGTVYKGVWIPEGEKVK-IPVAIKVLREETSPKANKEILDEAYVMASVDHPH 70
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFM---TQSLASALSYLHD 493
+++LL ++ ++ L+ +L+ G L D + + S+++ +A +SYL +
Sbjct: 71 VVRLLGICLSS-QVQLITQLMPLGCLLDYVRNHK--DNIGSQYLLNWCVQIAKGMSYLEE 127
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP---MFTVCG--TPT-YVAPEI 547
+VHRD+ N+LV+ + HVK+ DFGLA ++L + G P ++A E
Sbjct: 128 KRLVHRDLAARNVLVK-TPQHVKIT---DFGLA-KLLDVDEKEYHAEGGKVPIKWMALES 182
Query: 548 LNESGYGVKIDVWAAGVILYILL 570
+ Y K DVW+ GV ++ L+
Sbjct: 183 ILHRIYTHKSDVWSYGVTVWELM 205
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 62.2 bits (151), Expect = 1e-10
Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 51/239 (21%)
Query: 385 IGDGNFAVVRQ-----VYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
IG G F V Q + A+K++ + + + E ++ +HPNI+K
Sbjct: 13 IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVK 72
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKN----------------------VKFSEEDS 477
LL + L+ E + GDL + + + S +
Sbjct: 73 LLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQ 132
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV-------- 529
+ + +A+ ++YL + VHRD+ N LV G ++ V+K+ DFGL++ +
Sbjct: 133 LCIAKQVAAGMAYLSERKFVHRDLATRNCLV---GENM-VVKIADFGLSRNIYSADYYKA 188
Query: 530 ----LRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
P+ ++ PE + + Y + DVWA GV+L+ I G P+ +++
Sbjct: 189 SENDAIPI-------RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE 240
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 62.2 bits (151), Expect = 2e-10
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 41/246 (16%)
Query: 372 PSKLLQRYSVGQIIGDGNFAVVR----QVYDKHKDMDCALKIIDKSKLLGKKQMIE---- 423
P K L + + +G+G F V + +K D D +L + +L +M+
Sbjct: 3 PRKRL---TFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN 59
Query: 424 --------NEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDL----------FDA 465
E+ I+ + PNII+LL T++ L ++ E ++ GDL A
Sbjct: 60 KNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAA 119
Query: 466 ISKNVKF-SEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFG 524
+V S FM +AS + YL VHRD+ N LV + +K+ DFG
Sbjct: 120 EKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKN----YTIKIADFG 175
Query: 525 LAQRVLR-PMFTVCGTPT----YVAPEILNESGYGVKIDVWAAGVILY--ILLCGFPPFV 577
+++ + + + G +++ E + + DVWA GV L+ + LC P+
Sbjct: 176 MSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYS 235
Query: 578 SDTNDQ 583
+++Q
Sbjct: 236 QLSDEQ 241
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 61.3 bits (149), Expect = 3e-10
Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 378 RYSVGQIIGDGNFA-VVRQVY---DKHKD-MDCALKIIDKSKLLGKKQMIE--NEVNILR 430
R ++G+ +G+G F VV+ D + A+K++ +K + + +E+ +++
Sbjct: 13 RLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT--EKDLSDLVSEMEMMK 70
Query: 431 SV-NHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF--------MT 481
+ H NII LL LY+V+E G+L D + E S +T
Sbjct: 71 MIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLT 130
Query: 482 Q--------SLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM 533
Q +A + +L +HRD+ N+LV V+K+ DFGLA+ +
Sbjct: 131 QKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTED----HVMKIADFGLARDIHHID 186
Query: 534 F---TVCG-TPT-YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELF 587
+ T G P ++APE L + Y + DVW+ GV+L+ I G P+ +ELF
Sbjct: 187 YYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY--PGIPVEELF 244
Query: 588 DDILSG 593
+ G
Sbjct: 245 KLLKEG 250
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 60.8 bits (147), Expect = 4e-10
Identities = 61/269 (22%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 385 IGDGNFAVV-----RQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
+G G+F +V R + + A+K +++S L ++ NE ++++ ++++
Sbjct: 14 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 73
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDS-------KFMTQ---SLASALS 489
LL +V+EL+ GDL + +E + + M Q +A ++
Sbjct: 74 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 133
Query: 490 YLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTP-----TYVA 544
YL+ VHRD+ N +V H +K+GDFG+ + + + G ++A
Sbjct: 134 YLNAKKFVHRDLAARNCMV----AHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMA 189
Query: 545 PEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWD 603
PE L + + D+W+ GV+L+ I P+ +N+Q F ++ G Y P D
Sbjct: 190 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF--VMDGGY-LDQP--D 244
Query: 604 DISEEAKELISHMLESNPDLRFSAEDVLD 632
+ E +L+ + NP +R + ++++
Sbjct: 245 NCPERVTDLMRMCWQFNPKMRPTFLEIVN 273
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 60.3 bits (146), Expect = 5e-10
Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 43/282 (15%)
Query: 379 YSVGQIIGDGNFAVVRQVYDKHKD---MDCALKIIDKSKLLGKKQMIE--NEVNILRSVN 433
+++G+++G G F VR+ K +D A+K++ K+ + + E E ++ +
Sbjct: 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKML-KADIFSSSDIEEFLREAACMKEFD 59
Query: 434 HPNIIKLLD---EYDTNNEL---YLVIELIKGGDL--FDAISKNVKFSEEDSKFMTQSL- 484
HPN+IKL+ L +++ +K GDL F +S+ EE Q+L
Sbjct: 60 HPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSR---IGEEPFTLPLQTLV 116
Query: 485 ------ASALSYLHDNYIVHRDIKPENLLV--EMSGCHVKVLKVGDFGLAQRVLRPMFTV 536
AS + YL +HRD+ N ++ M+ C V DFGL++++ +
Sbjct: 117 RFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVC------VADFGLSKKIYSGDYYR 170
Query: 537 CGTPT-----YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDI 590
G + ++A E L ++ Y DVWA GV ++ I+ G P+ N E+++ +
Sbjct: 171 QGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN--SEIYNYL 228
Query: 591 LSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDVLD 632
+ G P D E+ EL+ P R S + + D
Sbjct: 229 IKGNRLKQPP---DCLEDVYELMCQCWSPEPKCRPSFQHLRD 267
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 60.3 bits (146), Expect = 5e-10
Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 383 QIIGDGNFAVVRQVYDKH---KDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
++IG G F V + K +++ A+K + +++ +E +I+ +HPNII
Sbjct: 10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIH 69
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-------MTQSLASALSYLH 492
L + + ++ E ++ G L + +N D +F M + +A+ + YL
Sbjct: 70 LEGVVTKSRPVMIITEFMENGALDSFLRQN------DGQFTVIQLVGMLRGIAAGMKYLS 123
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-----PMFTVC---GTPT-YV 543
+ VHRD+ N+LV + V KV DFGL+ R L P +T P +
Sbjct: 124 EMNYVHRDLAARNILVNSN----LVCKVSDFGLS-RFLEDDTSDPTYTSSLGGKIPIRWT 178
Query: 544 APEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
APE + + DVW+ G++++ ++ G P+ D ++QD + + + Y P P
Sbjct: 179 APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY-WDMSNQDVI--NAIEQDYRLPPP 233
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 60.2 bits (146), Expect = 5e-10
Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 383 QIIGDGNFAVVRQ---VYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
++IG G+F V + + + CA+K +++ L + + E I++ +HPN++
Sbjct: 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60
Query: 440 LLD-EYDTNNELYLVIELIKGGDLFDAISK-----NVKFSEEDSKFMTQSLASALSYLHD 493
LL + +V+ +K GDL + I VK D +A + YL
Sbjct: 61 LLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVK----DLIGFGLQVAKGMEYLAS 116
Query: 494 NYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF------TVCGTPT-YVAPE 546
VHRD+ N +++ S +KV DFGLA+ + + T P ++A E
Sbjct: 117 KKFVHRDLAARNCMLDES----FTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALE 172
Query: 547 ILNESGYGVKIDVWAAGVILYILLC-GFPPFVSDTNDQD 584
L + K DVW+ GV+L+ L+ G PP+ D + D
Sbjct: 173 SLQTQKFTTKSDVWSFGVLLWELMTRGAPPY-PDVDSFD 210
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 60.3 bits (146), Expect = 8e-10
Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 54/269 (20%)
Query: 422 IENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK--FSEEDSKF 479
++ E+++ + NHPNI+ + +NEL++V + G D I + SE +
Sbjct: 46 LQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAY 105
Query: 480 MTQSLASALSYLHDNYIVHRDIKPENLL------VEMSGCHVKVLKVGDFGLAQRVLR-- 531
+ Q + AL Y+H VHR +K ++L V +SG L + + G RV+
Sbjct: 106 ILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLR-SNLSMINHGQRLRVVHDF 164
Query: 532 PMFTVCGTPTYVAPEIL--NESGYGVKIDVWAAGVILYILLCGFPPF------------- 576
P ++V P +++PE+L N GY K D+++ G+ L G PF
Sbjct: 165 PKYSVKVLP-WLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKL 223
Query: 577 -------------------------VSDTNDQDELFDDILSGQYGFPS--PYWDDISEEA 609
+++ + G S PY S
Sbjct: 224 NGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHF 283
Query: 610 KELISHMLESNPDLRFSAEDVLDHPWLER 638
+ L+ NPD R SA +L+H + ++
Sbjct: 284 HHFVEQCLQRNPDARPSASTLLNHSFFKQ 312
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 59.6 bits (144), Expect = 8e-10
Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 385 IGDGNFAVVRQ-VYD-KHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLD 442
+G GNF V++ VY + K +D A+K++ + + E I+ +++P I++++
Sbjct: 3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIG 62
Query: 443 EYDTNNELYLVIELIKGGDLFDAIS-KNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDI 501
+ L LV+E+ GG L +S K + + + + ++ + YL VHRD+
Sbjct: 63 VCEAEA-LMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDL 121
Query: 502 KPENLLVEMSGCHVKVLKVGDFGLAQRV-----LRPMFTVCGTP-TYVAPEILNESGYGV 555
N+L+ + K+ DFGL++ + + P + APE +N +
Sbjct: 122 AARNVLL----VNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSS 177
Query: 556 KIDVWAAGVILY 567
+ DVW+ G+ ++
Sbjct: 178 RSDVWSYGITMW 189
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 59.3 bits (143), Expect = 2e-09
Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 385 IGDGNFAVV--RQVYDKHKDMD---CALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
+G+G F V + Y+ + D A+K + + +K E +L ++ H +I+K
Sbjct: 13 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDF-HREAELLTNLQHEHIVK 71
Query: 440 LLDEYDTNNELYLVIELIKGGDLF--------DAI-----SKNVKFSEEDSKFMTQSLAS 486
+ L +V E +K GDL DA+ ++ + ++ + Q +A+
Sbjct: 72 FYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAA 131
Query: 487 ALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT----- 541
+ YL + VHRD+ N LV + ++K+GDFG+++ V + G T
Sbjct: 132 GMVYLASQHFVHRDLATRNCLVGEN----LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIR 187
Query: 542 YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQ 583
++ PE + + + DVW+ GV+L+ I G P+ +N++
Sbjct: 188 WMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE 230
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 59.6 bits (144), Expect = 2e-09
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 29/231 (12%)
Query: 377 QRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPN 436
QR+ + ++G+G F V + +D+ + CA+KI+ + I E+ + V +
Sbjct: 129 QRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKI--EIQFMEKVRQAD 186
Query: 437 I-----IKLLDEYDTNNELYLVIELIKGGD-LFDAISKNVKFSEEDSKFMTQSLASALSY 490
+ + Y N ++ I + K G L D I K+ FS + AL Y
Sbjct: 187 PADRFPLMKIQRYFQNETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDY 246
Query: 491 LHDN-YIVHRDIKPENLLVEMSG---------------CHVKVLKVGDFGLAQRVLRPMF 534
H +++H D+KPEN+L+E S C V++ +G +R R
Sbjct: 247 FHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGC-CDERHSRT-- 303
Query: 535 TVCGTPTYVAPEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDE 585
+ T Y +PE++ G+ D+W+ G I+Y L G + DT+D E
Sbjct: 304 AIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTG--KLLYDTHDNLE 352
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 58.1 bits (140), Expect = 3e-09
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 383 QIIGDGNFAVVRQVYDK---HKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
++IG G F V + K K++ A+K + ++Q +E +I+ +H NII+
Sbjct: 11 KVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIR 70
Query: 440 LLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-------MTQSLASALSYLH 492
L ++ E ++ G A+ K ++ + D +F M + +A+ + YL
Sbjct: 71 LEGVVTKFKPAMIITEYMENG----ALDKYLR--DHDGEFSSYQLVGMLRGIAAGMKYLS 124
Query: 493 DNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL----RPMFTVCGTPT---YVAP 545
D VHRD+ N+LV + KV DFGL+ RVL +T G + AP
Sbjct: 125 DMNYVHRDLAARNILVNSN----LECKVSDFGLS-RVLEDDPEGTYTTSGGKIPIRWTAP 179
Query: 546 EILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSP 600
E + + DVW+ G++++ ++ G P+ +N E+ I G + P+P
Sbjct: 180 EAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN--HEVMKAINDG-FRLPAP 232
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 57.7 bits (139), Expect = 4e-09
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFD-----------AISKNV-KF 472
E+ I+ + +PNII+LL +++ L ++ E ++ GDL + N+
Sbjct: 67 EIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSV 126
Query: 473 SEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR- 531
S + +M +AS + YL VHRD+ N LV +K+ DFG+++ +
Sbjct: 127 SIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNH----YTIKIADFGMSRNLYSG 182
Query: 532 PMFTVCGTPT----YVAPEILNESGYGVKIDVWAAGVILY--ILLCGFPPFVSDTNDQ 583
+ + G ++A E + + DVWA GV L+ LC P+ +++Q
Sbjct: 183 DYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQ 240
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 56.2 bits (135), Expect = 1e-08
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNE--LYLVIELIKGGDLFDAISKNVKFSEEDSKF--- 479
E I++ + H ++ L Y +E +Y+V E + G L D + E D K+
Sbjct: 51 EAQIMKKLRHDKLVPL---YAVVSEEPIYIVTEFMGKGSLLDFLK------EGDGKYLKL 101
Query: 480 -----MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMF 534
M +A ++Y+ +HRD++ N+LV + V K+ DFGLA+ + +
Sbjct: 102 PQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDN----LVCKIADFGLARLIEDNEY 157
Query: 535 TV---CGTP-TYVAPEILNESGYGVKIDVWAAGVILYILLC-GFPPFVSDTNDQDELFDD 589
T P + APE + +K DVW+ G++L L+ G P+ N E+ +
Sbjct: 158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN--REVLEQ 215
Query: 590 ILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAE 628
+ G Y P P E EL+ + +PD R + E
Sbjct: 216 VERG-YRMPCP--QGCPESLHELMKLCWKKDPDERPTFE 251
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 56.2 bits (135), Expect = 1e-08
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 423 ENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI---------------S 467
+ E +++ ++HPNI+ LL + ++ E + GDL + +
Sbjct: 55 QQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDED 114
Query: 468 KNVKFSEEDSKFMTQSL--ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGL 525
VK S + F+ ++ A+ + YL ++ VH+D+ N+L+ G + V K+ D GL
Sbjct: 115 GTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILI---GEQLHV-KISDLGL 170
Query: 526 AQRVLRPMFTVCGTPT-----YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSD 579
++ + + + ++ PE + + D+W+ GV+L+ I G P+
Sbjct: 171 SREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF 230
Query: 580 TNDQ 583
+N +
Sbjct: 231 SNQE 234
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 56.6 bits (136), Expect = 1e-08
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 34/229 (14%)
Query: 378 RYSVGQIIGDGNFAVVRQV----YDKHKDMDC---ALKIIDKSKLLGKKQMIENEVNILR 430
+ ++G+ +G+G F V DK K + A+K++ + +E+ +++
Sbjct: 16 KLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK 75
Query: 431 SV-NHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN-----------VKFSEEDSK 478
+ H NII LL + LY+++E G+L + + + +E
Sbjct: 76 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMT 135
Query: 479 FM-----TQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM 533
F T +A + YL +HRD+ N+LV + V+K+ DFGLA+ V
Sbjct: 136 FKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTEN----NVMKIADFGLARDVNNID 191
Query: 534 F---TVCGT-PT-YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
+ T G P ++APE L + Y + DVW+ GV+++ I G P+
Sbjct: 192 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPY 240
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 56.2 bits (135), Expect = 1e-08
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 385 IGDGNFAVV--RQVYD---KHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIK 439
+G+G F V + Y+ M A+K + L +K + E +L ++ H +I+K
Sbjct: 13 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDF-QREAELLTNLQHEHIVK 71
Query: 440 LLDEYDTNNELYLVIELIKGGDLF--------DAI--------SKNVKFSEEDSKFMTQS 483
+ L +V E +K GDL DA+ + +
Sbjct: 72 FYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQ 131
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPT-- 541
+AS + YL + VHRD+ N LV G ++ ++K+GDFG+++ V + G T
Sbjct: 132 IASGMVYLASQHFVHRDLATRNCLV---GANL-LVKIGDFGMSRDVYSTDYYRVGGHTML 187
Query: 542 ---YVAPEILNESGYGVKIDVWAAGVILY 567
++ PE + + + DVW+ GVIL+
Sbjct: 188 PIRWMPPESIMYRKFTTESDVWSFGVILW 216
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 55.9 bits (135), Expect = 2e-08
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 406 ALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDA 465
A+K + ++ +Q E ++ + HPNI+ LL ++ E + GDL +
Sbjct: 39 AIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEF 98
Query: 466 ISKN-----VKFSEED---------SKFMTQSL--ASALSYLHDNYIVHRDIKPENLLVE 509
+ +N V D S F+ ++ A+ + YL ++ VHRD+ N LV
Sbjct: 99 LVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLV- 157
Query: 510 MSGCHVKVLKVGDFGLAQRV-----LRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGV 564
G + V K+ DFGL++ + R ++ PE + + + D+W+ GV
Sbjct: 158 --GEGLTV-KISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGV 214
Query: 565 ILY-ILLCGFPPFVSDTNDQ 583
+L+ I G P+ +N +
Sbjct: 215 VLWEIFSYGLQPYYGFSNQE 234
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 54.7 bits (131), Expect = 4e-08
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 25/215 (11%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNE--LYLVIELIKGGDLFDAI----SKNVKFSEEDSK 478
E +++ + H +++L Y +E +Y+V E + G L D + K ++ +
Sbjct: 51 EAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVD- 106
Query: 479 FMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV-- 536
M +AS ++Y+ VHRD++ N+LV + V KV DFGLA+ + +T
Sbjct: 107 -MAAQIASGMAYVERMNYVHRDLRAANILVGEN----LVCKVADFGLARLIEDNEYTARQ 161
Query: 537 -CGTP-TYVAPEILNESGYGVKIDVWAAGVILYILLC-GFPPFVSDTNDQDELFDDILSG 593
P + APE + +K DVW+ G++L L G P+ N E+ D + G
Sbjct: 162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVERG 219
Query: 594 QYGFPSPYWDDISEEAKELISHMLESNPDLRFSAE 628
Y P P + E +L+ P+ R + E
Sbjct: 220 -YRMPCP--PECPESLHDLMCQCWRKEPEERPTFE 251
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 55.0 bits (133), Expect = 4e-08
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
Query: 376 LQRYSVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHP 435
LQ +S + N V A+K++ ++ EV IL ++ P
Sbjct: 29 LQDFSEKAFAENDNADAPVLV---------AVKVLRPDASDNAREDFLKEVKILSRLSDP 79
Query: 436 NIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNV---KFSEEDSKFMTQS--------L 484
NI +LL + L +++E ++ GDL + K+V +SK ++ S +
Sbjct: 80 NIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQI 139
Query: 485 ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFT-----VCGT 539
AS + YL VHRD+ N LV G + + K+ DFG++ R +++ V G
Sbjct: 140 ASGMRYLESLNFVHRDLATRNCLV---GKNYTI-KIADFGMS----RNLYSSDYYRVQGR 191
Query: 540 PT----YVAPEILNESGYGVKIDVWAAGVILY-IL-LCGFPPFVSDTNDQ 583
++A E + + K DVWA GV L+ IL LC P+ T+ Q
Sbjct: 192 APLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQ 241
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 54.2 bits (130), Expect = 4e-08
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 424 NEVNILRSVNHPNIIKLLDEYDTNNE--LYLVIELIKGGDLFDAIS----KNVKFSEEDS 477
E I++ + H +++L Y +E +Y+V E + G L D + + +K
Sbjct: 50 EEAQIMKKLRHDKLVQL---YAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVD 106
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTV- 536
M +A+ ++Y+ +HRD++ N+LV V K+ DFGLA+ + +T
Sbjct: 107 --MAAQVAAGMAYIERMNYIHRDLRSANILVGDG----LVCKIADFGLARLIEDNEYTAR 160
Query: 537 --CGTP-TYVAPEILNESGYGVKIDVWAAGVILYILLC-GFPPFVSDTNDQDELFDDILS 592
P + APE + +K DVW+ G++L L+ G P+ N E+ + +
Sbjct: 161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN--REVLEQVER 218
Query: 593 GQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAE 628
G Y P P D EL+ + +P+ R + E
Sbjct: 219 G-YRMPCP--QDCPISLHELMLQCWKKDPEERPTFE 251
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 54.2 bits (130), Expect = 5e-08
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 419 KQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK 478
+Q + E +L + H +I++ L +V E ++ GDL ++ ++ D+K
Sbjct: 51 RQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDL----NRFLRSHGPDAK 106
Query: 479 FMTQS-------------------LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLK 519
+ +AS + YL + VHRD+ N LV G + V+K
Sbjct: 107 ILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLV---GQGL-VVK 162
Query: 520 VGDFGLAQRVLRPMFTVCGTPT-----YVAPEILNESGYGVKIDVWAAGVILY-ILLCGF 573
+GDFG+++ + + G T ++ PE + + + D+W+ GV+L+ I G
Sbjct: 163 IGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGK 222
Query: 574 PPFVSDTNDQ 583
P+ +N +
Sbjct: 223 QPWYQLSNTE 232
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 54.3 bits (130), Expect = 6e-08
Identities = 63/260 (24%), Positives = 117/260 (45%), Gaps = 47/260 (18%)
Query: 380 SVGQIIGDGNFAVVRQVYDKHKD--MDCALKIIDKSKLLGKKQMIE--NEVNILRSVNHP 435
++G+ +G+G F V + D + A+K + K + + +M + +E ++ +HP
Sbjct: 2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTM-KIAICTRSEMEDFLSEAVCMKEFDHP 60
Query: 436 NIIKLLDE--YDTNNELY----LVIELIKGGDL-----FDAISKNVKF--SEEDSKFMTQ 482
N+++L+ +E Y +++ +K GDL + + ++ ++ KFMT
Sbjct: 61 NVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMT- 119
Query: 483 SLASALSYLHDNYIVHRDIKPENLLVE--MSGCHVKVLKVGDFGLAQRVLRPMF----TV 536
+AS + YL +HRD+ N ++ M+ C V DFGL++++ + +
Sbjct: 120 DIASGMEYLSSKSFIHRDLAARNCMLNENMNVC------VADFGLSKKIYNGDYYRQGRI 173
Query: 537 CGTPT-YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFD------ 588
P ++A E L + Y K DVW+ GV ++ I G P+ N E++D
Sbjct: 174 AKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN--SEIYDYLRQGN 231
Query: 589 ------DILSGQYGFPSPYW 602
D L G Y S W
Sbjct: 232 RLKQPPDCLDGLYSLMSSCW 251
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 53.9 bits (129), Expect = 1e-07
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 378 RYSVGQIIGDGNFAVVRQV----YDK---HKDMDCALKIIDKSKLLGKKQMIENEVNILR 430
R ++G+ +G+G F V DK +K + A+K++ + +E+ +++
Sbjct: 13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMK 72
Query: 431 SV-NHPNIIKLLDEYDTNNELYLVIELIKGGDL-----------FDAISKNVKFSEEDSK 478
+ H NII LL + LY+++E G+L D K EE
Sbjct: 73 MIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLT 132
Query: 479 FM-----TQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM 533
F +A + YL +HRD+ N+LV V+K+ DFGLA+ V
Sbjct: 133 FKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTED----NVMKIADFGLARDVHNID 188
Query: 534 FTVCGTP-----TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
+ T ++APE L + Y + DVW+ GV+L+ I G P+
Sbjct: 189 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPY 237
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 52.9 bits (127), Expect = 1e-07
Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 36/268 (13%)
Query: 385 IGDGNFA-VVRQVYDKHKDMDCALKIIDKS---KLLGKKQMIENE----VNILRSVNHPN 436
+G G F + + V D+D + S K+LG +++ ++H +
Sbjct: 3 LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKH 62
Query: 437 IIKLL-----DEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFM--TQSLASALS 489
++KL DE +V E +K G L D K + + + LASAL
Sbjct: 63 LVKLYGVCVRDEN------IMVEEYVKFGPL-DVFLHREKNNVSLHWKLDVAKQLASALH 115
Query: 490 YLHDNYIVHRDIKPENLLV---EMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPE 546
YL D +VH ++ +N+LV ++ +V +K+ D G+ VL V P ++APE
Sbjct: 116 YLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIP-WIAPE 174
Query: 547 ILNESGYGVKI--DVWAAGVILYILLCGFP-PFVSDTNDQDELFDDILSGQYGFPSPYWD 603
+ + I D W+ G L + P + ++ + E F Q+ P P
Sbjct: 175 CIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERF---YQDQHRLPMPDCA 231
Query: 604 DISEEAKELISHMLESNPDLRFSAEDVL 631
+++ LI+ +P R S +L
Sbjct: 232 ELA----NLINQCWTYDPTKRPSFRAIL 255
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 52.4 bits (126), Expect = 2e-07
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 15/217 (6%)
Query: 423 ENEVNILRSVNHPNIIKL----LDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK 478
ENE+ LR ++ NI+K+ +D D L L++E G L + + K S +
Sbjct: 66 ENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKL 125
Query: 479 FMTQSLASALSYLHDNY-IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC 537
M L L+ ++++ + LV + LK+ GL + + P F
Sbjct: 126 DMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENY----KLKIICHGLEKILSSPPFKNV 181
Query: 538 GTPTYVAPEILNE--SGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSGQY 595
Y + ++LN+ S Y +K D+++ GV+L+ + G PF + E++D I++
Sbjct: 182 NFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPF--ENLTTKEIYDLIINKNN 239
Query: 596 GFPSPYWDDISEEAKELISHMLESNPDLRFSAEDVLD 632
P D E K ++ + R + +++L
Sbjct: 240 SLKLPL--DCPLEIKCIVEACTSHDSIKRPNIKEILY 274
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 52.1 bits (125), Expect = 3e-07
Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 36/241 (14%)
Query: 380 SVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKS-KLLGKKQM-IE---NEVNILRSVNH 434
+G+I+G+G F V + D LK+ K+ KL IE +E ++ +H
Sbjct: 2 KLGKILGEGEFGSVMEGQLSQDD-GSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60
Query: 435 PNIIKLLDEYDTNNEL------YLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSL---- 484
PN++KL+ + L +++ +K GDL + + + K Q+L
Sbjct: 61 PNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYS-RLGGLPEKLPLQTLLKFM 119
Query: 485 ---ASALSYLHDNYIVHRDIKPENLLV--EMSGCHVKVLKVGDFGLAQRVLRPMFTVCGT 539
A + YL + +HRD+ N ++ +M+ C V DFGL++++ + G
Sbjct: 120 VDIALGMEYLSNRNFIHRDLAARNCMLREDMTVC------VADFGLSKKIYSGDYYRQGR 173
Query: 540 PT-----YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDELFDDILSG 593
++A E L + Y K DVWA GV ++ I G P+ N E++D + G
Sbjct: 174 IAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--HEIYDYLRHG 231
Query: 594 Q 594
Sbjct: 232 N 232
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 53.1 bits (127), Expect = 3e-07
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 459 GGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVL 518
I+++ S D + +A+ + +L VHRD+ N+L+ C K++
Sbjct: 223 RTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLI----CEGKLV 278
Query: 519 KVGDFGLAQRVLRPMFTVCGTPTYV-----APEILNESGYGVKIDVWAAGVILY-ILLCG 572
K+ DFGLA+ ++R + T++ APE + + Y DVW+ G++L+ I G
Sbjct: 279 KICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLG 338
Query: 573 FPPFVSDTNDQDELFDDILSGQYGFPSPYW--DDISEEAKELISHMLESNPDLRF 625
P+ +E F + + Y P D+I E ++ E PD
Sbjct: 339 GTPYPELP--MNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQ 391
Score = 37.3 bits (86), Expect = 0.019
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 381 VGQIIGDGNF-----AVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVN-H 434
+G+ +G G F A + M A+K++ + +KQ + +E+ I+ + H
Sbjct: 41 LGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPH 100
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN 469
NI+ LL +Y++ E + GDL D + +N
Sbjct: 101 LNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRN 135
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 51.9 bits (124), Expect = 3e-07
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 27/240 (11%)
Query: 397 YDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIEL 456
Y K++ LK++D S E +++R V+H +I+ L + E +V E
Sbjct: 27 YSYEKEIKVILKVLDPSHRDISLAFFET-ASMMRQVSHKHIVLLYGVCVRDVENIMVEEF 85
Query: 457 IKGG--DLF-----DAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVE 509
++ G DLF D ++ KF + + LASALSYL D +VH ++ +N+L+
Sbjct: 86 VEFGPLDLFMHRKSDVLTTPWKFK------VAKQLASALSYLEDKDLVHGNVCTKNILLA 139
Query: 510 MSGCHVK---VLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNES-GYGVKIDVWAAGVI 565
G + +K+ D G+ VL V P ++APE + +S + D W+ G
Sbjct: 140 REGIDGECGPFIKLSDPGIPITVLSRQECVERIP-WIAPECVEDSKNLSIAADKWSFGTT 198
Query: 566 LY-ILLCGFPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLR 624
L+ I G P T + E F GQ +P +++ +L++H + +P+ R
Sbjct: 199 LWEICYNGEIPLKDKTLAEKERF---YEGQCMLVTPSCKELA----DLMTHCMNYDPNQR 251
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 51.6 bits (123), Expect = 5e-07
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 378 RYSVGQIIGDGNFAVVRQV----YDKHKD---MDCALKIIDKSKLLGKKQMIENEVNILR 430
R +G+ +G+G F V DK K A+K++ + +E+ +++
Sbjct: 19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 78
Query: 431 SV-NHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAIS----------------KNVKFS 473
+ H NII LL + LY+++E G+L + + + S
Sbjct: 79 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLS 138
Query: 474 EEDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM 533
+D +A + YL +HRD+ N+LV V+K+ DFGLA+ +
Sbjct: 139 FKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED----NVMKIADFGLARDIHHID 194
Query: 534 F---TVCGT-PT-YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
+ T G P ++APE L + Y + DVW+ GV+L+ I G P+
Sbjct: 195 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY 243
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 51.1 bits (122), Expect = 7e-07
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF----- 479
EV IL + PNII+LL + L ++ E ++ GDL +S + +E++
Sbjct: 69 EVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPP 128
Query: 480 --------------MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGL 525
+ +AS + YL VHRD+ N LV + +K+ DFG+
Sbjct: 129 AHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGEN----LTIKIADFGM 184
Query: 526 AQRVLR-PMFTVCGTPT----YVAPEILNESGYGVKIDVWAAGVILY--ILLCGFPPFVS 578
++ + + + G ++A E + + DVWA GV L+ ++LC P+
Sbjct: 185 SRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGE 244
Query: 579 DTNDQ-----DELFDD 589
T++Q E F D
Sbjct: 245 LTDEQVIENAGEFFRD 260
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 50.5 bits (121), Expect = 9e-07
Identities = 51/226 (22%), Positives = 101/226 (44%), Gaps = 32/226 (14%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDL--FDAISKNVKFSEEDSKFMTQ 482
E+++ R ++H N+++LL Y+++E GDL F +K+ K + ++
Sbjct: 58 ELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKS-KDEKLKPPPLST 116
Query: 483 S--------LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVG--------DFGLA 526
+A + +L + VHRD+ N LV S VKV + ++
Sbjct: 117 KQKVALCTQIALGMDHLSNARFVHRDLAARNCLVS-SQREVKVSLLSLSKDVYNSEYYKL 175
Query: 527 QRVLRPMFTVCGTPTYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQDE 585
+ L P+ ++APE + E + K DVW+ GV+++ + G PF ++ +E
Sbjct: 176 RNALIPL-------RWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD--EE 226
Query: 586 LFDDILSGQYGFPSPYWDDISEEAKELISHMLESNPDLRFSAEDVL 631
+ + + +G+ P P + +L++ NP R S +++
Sbjct: 227 VLNRLQAGKLELPVP--EGCPSRLYKLMTRCWAVNPKDRPSFSELV 270
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 50.3 bits (120), Expect = 1e-06
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 34/230 (14%)
Query: 377 QRYSVGQIIGDGNFA-VVR-QVYDKHKD-----MDCALKIIDKSKLLGKKQMIENEVNIL 429
R +G+ +G+G F VVR + Y K + A+K++ + + +E+ ++
Sbjct: 12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELM 71
Query: 430 RSVN-HPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN-----------VKFSEEDS 477
+ + H NII LL LY+++E G+L + + K EE
Sbjct: 72 KLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQL 131
Query: 478 KF-----MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP 532
F +A + YL +HRD+ N+LV V+K+ DFGLA+ V
Sbjct: 132 SFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTED----NVMKIADFGLARGVHDI 187
Query: 533 MF---TVCG-TPT-YVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
+ T G P ++APE L + Y + DVW+ G++++ I G P+
Sbjct: 188 DYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPY 237
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 49.2 bits (117), Expect = 3e-06
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 18/206 (8%)
Query: 383 QIIGDGNFAVVRQ---VYDKHK-DMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII 438
+++G G F V + + + K + A+K + ++ + I +E ++ SV++P++
Sbjct: 13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 72
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKF--SEEDSKFMTQSLASALSYLHDNYI 496
+LL T+ + L+ +L+ G L D + ++ S+ + Q +A ++YL + +
Sbjct: 73 RLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQ-IAKGMNYLEERRL 130
Query: 497 VHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL--RPMFTVCGTPT---YVAPEILNES 551
VHRD+ N+LV+ HVK+ DFGLA+ + + G ++A E +
Sbjct: 131 VHRDLAARNVLVKTPQ-HVKIT---DFGLAKLLGADEKEYHAEGGKVPIKWMALESILHR 186
Query: 552 GYGVKIDVWAAGVILYILLC-GFPPF 576
Y + DVW+ GV ++ L+ G P+
Sbjct: 187 IYTHQSDVWSYGVTVWELMTFGSKPY 212
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 48.9 bits (116), Expect = 5e-06
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 481 TQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTP 540
T +A + +L VHRD+ N+L+ K++K+ DFGLA+ ++ V
Sbjct: 243 TYQVARGMEFLASKNCVHRDLAARNVLL----AQGKIVKICDFGLARDIMHDSNYVSKGS 298
Query: 541 TYV-----APEILNESGYGVKIDVWAAGVILY-ILLCG---FPPFVSDTNDQDELFDDIL 591
T++ APE + ++ Y DVW+ G++L+ I G +P + D+ ++ I
Sbjct: 299 TFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST----FYNKIK 354
Query: 592 SGQYGFPSPYWDDISEEAKELISHMLESNPDLRFS 626
SG Y P D ++E +++ S P+ R S
Sbjct: 355 SG-YRMAKP--DHATQEVYDIMVKCWNSEPEKRPS 386
Score = 35.0 bits (80), Expect = 0.12
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 381 VGQIIGDGNFAVVRQ--VYDKHKD---MDCALKIIDKSKLLGKKQMIENEVNILRSVN-H 434
+G+I+G G F V + Y + M A+K++ + +KQ + +E+ I+ + H
Sbjct: 41 LGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPH 100
Query: 435 PNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKN 469
NI+ LL + +Y++ E GDL + + KN
Sbjct: 101 LNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKN 135
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 48.1 bits (114), Expect = 5e-06
Identities = 43/203 (21%), Positives = 90/203 (44%), Gaps = 31/203 (15%)
Query: 406 ALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDA 465
A+K + ++ ++E + + HPNI+ LL L ++ DL +
Sbjct: 39 AIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEF 98
Query: 466 I--------------SKNVKFSEEDSKFM--TQSLASALSYLHDNYIVHRDIKPENLLV- 508
+ K VK + E + F+ +A+ + +L +++VH+D+ N+LV
Sbjct: 99 LVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVF 158
Query: 509 -EMSGCHVKVLKVGDFGLAQRVLRP-MFTVCGTPT----YVAPEILNESGYGVKIDVWAA 562
+++ +K+ D GL + V + + G +++PE + + + D+W+
Sbjct: 159 DKLN------VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSY 212
Query: 563 GVILY-ILLCGFPPFVSDTNDQD 584
GV+L+ + G P+ +N QD
Sbjct: 213 GVVLWEVFSYGLQPYCGYSN-QD 234
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 48.0 bits (114), Expect = 6e-06
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQS 483
E L +H NI++L N + +V E + G L + K+ + M
Sbjct: 56 EALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPG 115
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMS-GCHVKVLKVGDFGLAQR-VLRPMFTVCGTPT 541
LAS + YL + VH+ + +LV C K+ F Q ++T +
Sbjct: 116 LASGMKYLSEMGYVHKGLAAHKVLVNSDLVC-----KISGFRRLQEDKSEAIYTTMSGKS 170
Query: 542 YV---APEILNESGYGVKIDVWAAGVILY-ILLCGFPPFVSDTNDQD 584
V APE + + DVW+ G++++ ++ G P+ D + QD
Sbjct: 171 PVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPY-WDMSGQD 216
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 47.4 bits (112), Expect = 1e-05
Identities = 56/202 (27%), Positives = 106/202 (52%), Gaps = 23/202 (11%)
Query: 383 QIIGDGNFAVV-RQVYDKHKD---MDCALKIIDKSKLLGKKQMIE--NEVNILRSVNHPN 436
+++G G F V + ++ + + A+KI++++ G K +E +E I+ S++HP+
Sbjct: 13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT--GPKANVEFMDEALIMASMDHPH 70
Query: 437 IIKLLDEYDTNNELYLVIELIKGGDLFDAIS--KNVKFSEEDSKFMTQSLASALSYLHDN 494
+++LL + + LV +L+ G L D + K+ S+ + Q +A + YL +
Sbjct: 71 LVRLLG-VCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQ-IAKGMMYLEER 128
Query: 495 YIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVL---RPMFTVCGTPT---YVAPEIL 548
+VHRD+ N+LV+ S HVK+ DFGLA R+L + G ++A E +
Sbjct: 129 RLVHRDLAARNVLVK-SPNHVKIT---DFGLA-RLLEGDEKEYNADGGKMPIKWMALECI 183
Query: 549 NESGYGVKIDVWAAGVILYILL 570
+ + + DVW+ GV ++ L+
Sbjct: 184 HYRKFTHQSDVWSYGVTIWELM 205
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 47.5 bits (113), Expect = 1e-05
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM-FTV 536
+F +Q +A + +L +HRD+ N+L+ +V K+ DFGLA+ ++ + V
Sbjct: 216 RFSSQ-VAQGMDFLASKNCIHRDVAARNVLLT----DGRVAKICDFGLARDIMNDSNYVV 270
Query: 537 CGTP----TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
G ++APE + + Y V+ DVW+ G++L+ I G P+
Sbjct: 271 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPY 315
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 47.9 bits (114), Expect = 1e-05
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 17/195 (8%)
Query: 384 IIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNIIKLLDE 443
+I G + M +K I+ + +E+ + + HPNI+KL+
Sbjct: 697 VISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP-----SSEIADMGKLQHPNIVKLIGL 751
Query: 444 YDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDN---YIVHRD 500
+ YL+ E I+G +L + + S E + + +A AL +LH +V +
Sbjct: 752 CRSEKGAYLIHEYIEGKNLSEVLR---NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGN 808
Query: 501 IKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNESGYGVKIDVW 560
+ PE ++++ G L++ GL L + YVAPE K D++
Sbjct: 809 LSPEKIIID--GKDEPHLRLSLPGL----LCTDTKCFISSAYVAPETRETKDITEKSDIY 862
Query: 561 AAGVILYILLCGFPP 575
G+IL LL G P
Sbjct: 863 GFGLILIELLTGKSP 877
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 46.5 bits (110), Expect = 2e-05
Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 16/205 (7%)
Query: 383 QIIGDGNFAVVRQ---VYD-KHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII 438
+++G G F V + + D ++ + A+K++ ++ + I +E ++ V P +
Sbjct: 13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVC 72
Query: 439 KLLDEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDSKFMTQSLASALSYLHDNYIV 497
+LL T+ + LV +L+ G L D + +N + +D +A +SYL + +V
Sbjct: 73 RLLGICLTST-VQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLV 131
Query: 498 HRDIKPENLLVEMSGCHVKVLKVGDFGLAQ--RVLRPMFTVCGTPT---YVAPEILNESG 552
HRD+ N+LV+ S HVK+ DFGLA+ + + G ++A E +
Sbjct: 132 HRDLAARNVLVK-SPNHVKIT---DFGLARLLDIDETEYHADGGKVPIKWMALESILHRR 187
Query: 553 YGVKIDVWAAGVILYILLC-GFPPF 576
+ + DVW+ GV ++ L+ G P+
Sbjct: 188 FTHQSDVWSYGVTVWELMTFGAKPY 212
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 45.3 bits (107), Expect = 5e-05
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 482 QSLASALSYLHDNYIVHRDIKPENLLVEMSGC---HVKVLKVGDFGLAQRVLRPMFTVCG 538
Q LASALSYL D +VH ++ +N+L+ G +K+ D G++ L V
Sbjct: 124 QQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVER 183
Query: 539 TPTYVAPEIL-NESGYGVKIDVWAAG-VILYILLCGFPPFVSDTNDQDELFDDILSGQYG 596
P ++APE + + D W+ G +L I G P T + E F ++
Sbjct: 184 IP-WIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERF---YEKKHR 239
Query: 597 FPSPYWDDISEEAKELISHMLESNPDLRFSAEDVL 631
P P +++ LIS L P R S +L
Sbjct: 240 LPEPSCKELA----TLISQCLTYEPTQRPSFRTIL 270
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 45.0 bits (106), Expect = 7e-05
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Query: 420 QMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF 479
+ ++NEV + HPNI+ + T + L+++ + G +++ K F E S+
Sbjct: 44 KALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSA-NSLLKTY-FPEGMSEA 101
Query: 480 MTQSL----ASALSYLHDNYIVHRDIKPENL------LVEMSG-----CHVKVLKVGDFG 524
+ ++ L+YLH N +HR+IK ++ LV +SG V+ G
Sbjct: 102 LIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVR------NG 155
Query: 525 LAQRVLR--PMFTVCGTPTYVAPEILNE--SGYGVKIDVWAAGVILYILLCGFPPF 576
+V+ P F+ P +++PE+L + GY VK D+++ G+ L G PF
Sbjct: 156 QKAKVVYDFPQFSTSVLP-WLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPF 210
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 45.0 bits (106), Expect = 7e-05
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-PMFTVCGTP-- 540
+A + +L +HRD+ N+L+ + V+K+ DFGLA+ + + P + G
Sbjct: 188 VAKGMEFLASRKCIHRDLAARNILLSEN----NVVKICDFGLARDIYKDPDYVRKGDARL 243
Query: 541 --TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
++APE + + Y ++ DVW+ GV+L+ I G P+
Sbjct: 244 PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 282
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 44.7 bits (106), Expect = 8e-05
Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 38/218 (17%)
Query: 378 RYSVGQIIGDGNFAVVRQ-VY---DKHKDMDCALK-IIDKSKLLGKKQMIENEVNILRSV 432
R ++ ++ +G F + + K+ + +K + D + + + ++ E +L +
Sbjct: 7 RVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI-QVTLLLQESCLLYGL 65
Query: 433 NHPNIIKLL----DEYDT-----------NNELYLVIELIKGGDLFDAISKNVKFSEEDS 477
+H NI+ +L ++ + N +L+L + + A+S +
Sbjct: 66 SHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALS------TQQL 119
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVC 537
M +A +SYLH ++H+DI N +++ +K+ D L+ R L PM C
Sbjct: 120 VHMAIQIACGMSYLHKRGVIHKDIAARNCVID----EELQVKITDNALS-RDLFPMDYHC 174
Query: 538 -----GTPT-YVAPEILNESGYGVKIDVWAAGVILYIL 569
P ++A E L Y DVW+ GV+L+ L
Sbjct: 175 LGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWEL 212
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 45.0 bits (106), Expect = 8e-05
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-PMFTVCGTP-- 540
+A + +L +HRD+ N+L+ + V+K+ DFGLA+ + + P + G+
Sbjct: 183 VARGMEFLASRKCIHRDLAARNILLSEN----NVVKICDFGLARDIYKDPDYVRKGSARL 238
Query: 541 --TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
++APE + + Y + DVW+ GV+L+ I G P+
Sbjct: 239 PLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPY 277
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 43.8 bits (103), Expect = 1e-04
Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 382 GQIIGDGNFAVVRQ-VYDKHKD---MDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
+++G G F V + ++ D + A+K I Q I + + + S++H I
Sbjct: 12 LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYI 71
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQ--SLASALSYLHDNY 495
++LL L LV +L G L D + ++ + S + + + +A + YL ++
Sbjct: 72 VRLLG-ICPGASLQLVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLEEHR 129
Query: 496 IVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRP-----MFTVCGTP-TYVAPEILN 549
+VHR++ N+L++ ++++ DFG+A +L P ++ TP ++A E +
Sbjct: 130 MVHRNLAARNILLKSD----SIVQIADFGVAD-LLYPDDKKYFYSEHKTPIKWMALESIL 184
Query: 550 ESGYGVKIDVWAAGVILYILLC-GFPPFVS 578
Y + DVW+ GV ++ ++ G P+
Sbjct: 185 FGRYTHQSDVWSYGVTVWEMMSYGAEPYAG 214
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 43.4 bits (102), Expect = 2e-04
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI-----SKNVKFSEEDSKF 479
E RS+ H N+++ L + LV+E GDL + ++ + +
Sbjct: 45 EAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQR 104
Query: 480 MTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGT 539
M +A L +LH N +H D+ N L+ +K+GD+GL+ + + V
Sbjct: 105 MACEIALGLLHLHKNNFIHSDLALRNCLLTAD----LTVKIGDYGLSHNKYKEDYYVTPD 160
Query: 540 PTYV-----APEILNE-SGYGVKID------VWAAGVILYILL-CGFPPFVSDTNDQDEL 586
+V APE+++E G + +D VW+ GV ++ L G P+ +D+ L
Sbjct: 161 QLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPY-RHLSDEQVL 219
Query: 587 FDDILSGQYGFPSP 600
+ Q P P
Sbjct: 220 TYTVREQQLKLPKP 233
>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; pseudokinase domain (repeat 1). The
PTKc (catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal tyr kinase domain. The pseudokinase
domain shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak2 is widely expressed in
many tissues while Jak3 is expressed only in
hematopoietic cells. Jak2 is essential for the signaling
of hormone-like cytokines such as growth hormone,
erythropoietin, thrombopoietin, and prolactin, as well
as some IFNs and cytokines that signal through the IL-3
and gp130 receptors. Jak3 binds the shared receptor
subunit common gamma chain and thus, is essential in the
signaling of cytokines that use it such as IL-2, IL-4,
IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice
results in an embryonic lethal phenotype with multiple
defects including erythropoietic and cardiac
abnormalities. It is the only Jak gene that results in a
lethal phenotype when disrupted in mice. A mutation in
the pseudokinase domain of Jak2, V617F, is present in
many myeloproliferative diseases, including almost all
patients with polycythemia vera, and 50% of patients
with essential thrombocytosis and myelofibrosis. Jak3 is
important in lymphoid development and myeloid cell
differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 258
Score = 43.3 bits (102), Expect = 2e-04
Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 25/257 (9%)
Query: 385 IGDGNFAVV-----RQV--YDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNI 437
+G G F + R+V Y + + LK++DKS + E +++ ++H ++
Sbjct: 3 LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFE-AASMMSQLSHKHL 61
Query: 438 IKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKF-MTQSLASALSYLHDNYI 496
+ +E +V E +K G L + KN K + + LA AL +L D +
Sbjct: 62 VLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGL 121
Query: 497 VHRDIKPENLLVEMSGCHVK----VLKVGDFGLAQRVLRPMFTVCGTPTYVAPEILNES- 551
H ++ +N+L+ +K+ D G++ VL + P +V PE +
Sbjct: 122 THGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIP-WVPPECIENPQ 180
Query: 552 GYGVKIDVWAAGVILYILLCG--FPPFVSDTNDQDELFDDILSGQYGFPSPYWDDISEEA 609
+ D W+ G L+ + G P D+ + + ++D ++ P+P W E
Sbjct: 181 NLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYED----RHQLPAPKW----TEL 232
Query: 610 KELISHMLESNPDLRFS 626
LI+ ++ PD R S
Sbjct: 233 ANLINQCMDYEPDFRPS 249
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 42.9 bits (101), Expect = 3e-04
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 30/222 (13%)
Query: 430 RSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNV-KFSEEDS---KFMTQSLA 485
R + HPNI++ L + LV E + GDL +S+ + M +A
Sbjct: 50 RILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIA 109
Query: 486 SALSYLHDNYIVHRDIKPENLLVEMSGCHVK---VLKVGDFGLAQRVLRPMFT-----VC 537
+ ++++H + +H D+ N C + +KVGD+G+ + + C
Sbjct: 110 AGVTHMHKHNFLHSDLALRN-------CFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKC 162
Query: 538 GTPTYVAPEILNESGYGVKI-------DVWAAGVILYILL-CGFPPFVSDTNDQDELFDD 589
++APE++ E G+ +VWA GV L+ L P+ S +D++ L
Sbjct: 163 VPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPY-SHLSDREVLNHV 221
Query: 590 ILSGQYGFPSPYWD-DISEEAKELISHMLESNPDLRFSAEDV 630
I Q P + SE E++ S P+ R +AE+V
Sbjct: 222 IKDQQVKLFKPQLELPYSERWYEVLQFCWLS-PEKRATAEEV 262
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 42.8 bits (100), Expect = 5e-04
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRV-----LRP 532
K + + + + L LH IVHRDIKPENLLV + G VK++ DFG A + P
Sbjct: 312 KGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDG-QVKII---DFGAAVDMCTGINFNP 367
Query: 533 MFTVCGTPTYVAPEIL 548
++ + P Y PE L
Sbjct: 368 LYGML-DPRYSPPEEL 382
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 42.1 bits (99), Expect = 5e-04
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 484 LASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLR-PMFTVCGTP-- 540
+A + +L +HRD+ N+L+ + V+K+ DFGLA+ + + P + G
Sbjct: 182 VARGMEFLASRKCIHRDLAARNILLSEN----NVVKICDFGLARDIYKDPDYVRKGDARL 237
Query: 541 --TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
++APE + + Y + DVW+ GV+L+ I G P+
Sbjct: 238 PLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPY 276
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 42.2 bits (99), Expect = 6e-04
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 475 EDSKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPM- 533
ED + +A +S+L +HRD+ N+L+ H ++ K+ DFGLA+ +
Sbjct: 214 EDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLT----HGRITKICDFGLARDIRNDSN 269
Query: 534 FTVCGTP----TYVAPEILNESGYGVKIDVWAAGVILY-ILLCGFPPF 576
+ V G ++APE + Y + DVW+ G++L+ I G P+
Sbjct: 270 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPY 317
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 40.9 bits (96), Expect = 0.002
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 477 SKFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKV--------LKVG------D 522
M Q L AL LH IVHRD+KP+N++ K+ L+VG +
Sbjct: 258 QTIMRQIL-FALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKE 316
Query: 523 FGLAQRVLRPMFTVCGTPTYVAPE---------ILNESGYGVKIDVWAAGVILYILLCGF 573
F L R P + T T AP +L + + D+++AG+I L F
Sbjct: 317 FLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIF--LQMAF 374
Query: 574 PPFVSDTN 581
P SD+N
Sbjct: 375 PNLRSDSN 382
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 38.5 bits (90), Expect = 0.003
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 380 SVGQIIGDGNFAVVRQVYDKHKDMDCALKIIDKSKLLGKKQMIENEVNILRSVNHPNII- 438
S +++ G V + K +D LKI K E EV IL+ + +
Sbjct: 1 SSIKLLKGGLTNRVYLLGTKDEDY--VLKINPSR---EKGADREREVAILQLLARKGLPV 55
Query: 439 -KLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLH--DNY 495
K+L +++ YL++E I+G L + SEE+ + + + LA L+ LH
Sbjct: 56 PKVLASGESDGWSYLLMEWIEGETLD-------EVSEEEKEDIAEQLAELLAKLHQLPLL 108
Query: 496 -IVHRDIKPENLLV 508
+ H D+ P N+LV
Sbjct: 109 VLCHGDLHPGNILV 122
>gnl|CDD|182395 PRK10345, PRK10345, hypothetical protein; Provisional.
Length = 210
Score = 38.2 bits (89), Expect = 0.005
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 474 EEDSKFMTQSLASALSYLHDNYIVHRDIKPENLL 507
EED + Q L YL DN IV ++KP+N+L
Sbjct: 104 EEDVAQLRQLLKKLKRYLLDNRIVTMELKPQNIL 137
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 36.6 bits (85), Expect = 0.014
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 20/155 (12%)
Query: 485 ASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQRVLRPMFTVCGTPTYVA 544
AL LH + + L+++ G P ++A
Sbjct: 27 LGALRELHRQAKSGNILLTWDGLLKLDGSVAFKTPEQSRP--------------DPYFMA 72
Query: 545 PEILNESGYGVKIDVWAAGVILYILLCGFPPFVSDTNDQDELFDDILSG-----QYGFPS 599
PE++ Y K D+++ G+ LY L P+ ++ + + + +L+G +
Sbjct: 73 PEVIQGQSYTEKADIYSLGITLYEALDYELPY-NEERELSAILEILLNGMPADDPRDRSN 131
Query: 600 PYWDDISEEAKELISHMLESNPDLRFSAEDVLDHP 634
+ ++ + P R +A L H
Sbjct: 132 LEGVSAARSFEDFMRLCASRLPQRREAANHYLAHC 166
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 37.6 bits (88), Expect = 0.022
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 444 YD-TNNELYLVIELIKGGDLFDAISKNVKFSEEDSKFMTQSLASALSYLHDNYIVHRDIK 502
YD E +V+E I G DL D + N + + + ++ LH IVH D+
Sbjct: 404 YDVDPEEKTIVMEYIGGKDLKDVLEGNPELVRK--------VGEIVAKLHKAGIVHGDLT 455
Query: 503 PENLLVEMSGCHVKVLKVGDFGLAQ 527
N +V ++ DFGL +
Sbjct: 456 TSNFIVRDDRLYLI-----DFGLGK 475
>gnl|CDD|214561 smart00211, TY, Thyroglobulin type I repeats. The N-terminal
region of human thyroglobulin contains 11 type-1 repeats
TY repeats are proposed to be inhibitors of cysteine
proteases and binding partners of heparin.
Length = 46
Score = 31.2 bits (71), Expect = 0.11
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 338 CLDASGREVPKMPTKTSVARCAT 360
C+DA+GRE+P T+ C +
Sbjct: 24 CVDATGREIPGTRTEGGDPDCPS 46
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 34.2 bits (79), Expect = 0.12
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 24/109 (22%)
Query: 424 NEVNILRS-----VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDS 477
E IL V P + + D +N L +V+E I+G L DA+ E
Sbjct: 48 REARILAKAREAGVPVPIVY----DVDPDNGL-IVMEYIEGELLKDALEEARPDLLRE-- 100
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLA 526
+ + LH IVH D+ N+++ + DFGL
Sbjct: 101 ------VGRLVGKLHKAGIVHGDLTTSNIILSGGRIYFI-----DFGLG 138
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 34.2 bits (78), Expect = 0.17
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVE 509
K + + + + L Y+H++ I H DIKPEN++V+
Sbjct: 129 KNIMKDMLTTLEYIHEHGISHGDIKPENIMVD 160
>gnl|CDD|165329 PHA03031, PHA03031, hypothetical protein; Provisional.
Length = 449
Score = 33.4 bits (76), Expect = 0.41
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 425 EVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSE 474
++N +R N I K L+EYD ++ +I K +F I K K +
Sbjct: 222 DINKIRHFNDFLIFKNLEEYDIKLDIAEIIFTDKKKKIFLCIKKISKVCK 271
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 31.8 bits (73), Expect = 0.64
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 424 NEVNILRS-----VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAI-SKNVKFSEEDS 477
NE +L VN P + + D +N+ +V+E I+G L D I N + E
Sbjct: 46 NEARLLSRARKAGVNTPVVY----DVDPDNKT-IVMEYIEGKPLKDVIEEGNDELLRE-- 98
Query: 478 KFMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQR 528
+ + LH IVH D+ N++V ++ DFGL +
Sbjct: 99 ------IGRLVGKLHKAGIVHGDLTTSNIIVRDDKLYLI-----DFGLGKY 138
>gnl|CDD|173597 PTZ00407, PTZ00407, DNA topoisomerase IA; Provisional.
Length = 805
Score = 32.6 bits (74), Expect = 0.78
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 162 NIDELEDGKFYICSSSGDQFKKVDYAILNNNNSSNTLPRSGKFITKSAPPRVNK--TPTS 219
+I +E+G + S S ++F AI+N + + + G F +S R N+ P
Sbjct: 523 DITAVEEGAPVVPSLSQEEF----KAIMNLRSQLGSGVQKGFFELRSPQVRENRPVPPLP 578
Query: 220 FVVRPRIIIVIRNGI-RPRK---VVRALLNK 246
I + NG+ RP +V+ LL +
Sbjct: 579 HSEGTLIEELKNNGVGRPSTYPMIVKTLLAR 609
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 32.7 bits (74), Expect = 0.80
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 323 DLRRPEHTKLKSGTTCLDASGREVPK-MPTKTSVARCATATIKRRENLNI-PSKLLQRYS 380
D R P ++K +G +GR+ + + +A+ A + + NL++ P+ + Q YS
Sbjct: 457 DPRTPSYSKF-TGEGMRGGTGRDKQRGSHLRVLLAKSALKNL-LQTNLDLFPACIDQCYS 514
Query: 381 VGQIIGDGNFAVVRQVYDKHKDMDCAL---------KIIDKSKLLGKK--QMIE 423
I DG F+V+ +VY + + C + K++D+S+ + QM+E
Sbjct: 515 SDPSIADGYFSVLAEVYMRQEIPKCEIQRLLSLILYKVVDQSRQIRDDALQMLE 568
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 31.9 bits (73), Expect = 1.1
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 134 ELTRALAENINLPSGVRILFTMDGQKVTNIDELEDGKFYICSSSGDQFKKVDYAI----- 188
ELTRALAE +GV + +VT I++ DG F + +S+G++ + + I
Sbjct: 154 ELTRALAEEA-QANGVELRL---NTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGL 209
Query: 189 --------LNNNNSSNTLPRSGKFI--TKSAPPRVN 214
P G+++ +
Sbjct: 210 YADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKALLR 245
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the AMPA receptor. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor, a member of the glutamate-receptor ion
channels (iGluRs). AMPA receptors are the major
mediators of excitatory synaptic transmission in the
central nervous system. While this N-terminal domain
belongs to the periplasmic-binding fold type I
superfamily, the glutamate-binding domain of the iGluR
is structurally homologous to the periplasmic-binding
fold type II. The LIVBP-like domain of iGluRs is thought
to play a role in the initial assembly of iGluR
subunits, but it is not well understood how this domain
is arranged and functions in intact iGluR. AMPA
receptors consist of four types of subunits (GluR1,
GluR2, GluR3, and GluR4) which combine to form a
tetramer and play an important roles in mediating the
rapid excitatory synaptic current.
Length = 382
Score = 30.7 bits (70), Expect = 2.7
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 143 INLPSGVRILFTMDGQKVTNIDELEDGKFYICSSSGDQFKKVDYAIL--NNNNSSNTLPR 200
L V L T D +TN ICS Q + +AI + +S NTL
Sbjct: 34 FKLLPHVDNLDTSDSFALTNA---------ICS----QLSRGVFAIFGSYDKSSVNTLTS 80
Query: 201 -SGK----FITKSAPPRVNKTPTSFVV--RPRII 227
S FIT S P FV+ RP +I
Sbjct: 81 YSDALHVPFITPSFPTNDLDDGNQFVLQMRPSLI 114
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 29.9 bits (68), Expect = 3.0
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 424 NEVNILRS-----VNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVKFSEEDSK 478
E I+ VN P + +D + +V+E I+G L D I+ N E S+
Sbjct: 48 REARIMSRARKAGVNVP-AVYFVDPENFI----IVMEYIEGEPLKDLINSNGMEELELSR 102
Query: 479 FMTQSLASALSYLHDNYIVHRDIKPENLLVEMSGCHVKVLKVGDFGLAQR 528
+ + LH I+H D+ N+++ + + DFGLA+
Sbjct: 103 EI----GRLVGKLHSAGIIHGDLTTSNMILSGGK-----IYLIDFGLAEF 143
>gnl|CDD|151200 pfam10707, YrbL-PhoP_reg, PhoP regulatory network protein YrbL.
This is a family of proteins that are activated by PhoP.
PhoP protein controls the expression of a large number
of genes that mediate adaptation to low Mg2+
environments and/or virulence in several bacterial
species. YbrL is proposed to be acting in a loop
activity with PhoP and PrmA analogous to the
multicomponent loop in Salmonella where the
PhoP-dependent PmrD protein activates the regulatory
protein PmrA, and the activated PmrA then represses
transcription from the PmrD promoter which harbours
binding sites for both the PhoP and PmrA proteins.
Expression of YrbL is induced in low Mg2+ in a
PhoP-dependent fashion and repressed by Fe3+ in a
PmrA-dependent manner.
Length = 199
Score = 29.1 bits (66), Expect = 4.8
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 385 IGDGNFAVVRQVYDKHK-DMDCALKIIDKSKLLGKKQ---------------MIENEVN- 427
+ G R VY H D D +K++ + + +++ E+
Sbjct: 9 LAQGG---QRLVY-AHPLDADLCIKVLRPANIAARRRFKGWLKRLLPTSRYRQNLRELKE 64
Query: 428 -----ILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLFDAISKNVK-FSEEDSKFMT 481
R ++ I + +T+ L LV E I+ D IS ++ + +T
Sbjct: 65 YLRLSKRRGIDWSPIPRYYGFVETDLGLGLVTERIRDAD--GNISPTLEDLLKNGG--LT 120
Query: 482 QSLASAL----SYLHDNYIVHRDIKPENLLV 508
+L AL YL DN+IV RD+ P N++
Sbjct: 121 AALREALNEFKRYLLDNHIVARDLNPHNIVY 151
>gnl|CDD|226220 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 30.0 bits (68), Expect = 5.8
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 89 DFTPSPLKSRRAKRIRFLCNGDKFFKGVVMAVGPERYRSFDSLLEELTRALAENINLPSG 148
+ P + +R R VV A R R S +EE +A+AE + LP G
Sbjct: 796 EVVTGPNQIKRENGKRRS---------VVYAN--VRGRDLGSFVEEAQKAIAEKVKLPPG 844
>gnl|CDD|219022 pfam06426, SATase_N, Serine acetyltransferase, N-terminal. The
N-terminal domain of serine acetyltransferase has a
sequence that is conserved in plants and bacteria.
Length = 105
Score = 27.8 bits (63), Expect = 6.1
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 602 WDDISEEAKELISHMLESNPDLR-FSAEDVLDHPWLERS 639
W I EA+ E P L F +L+H LE +
Sbjct: 2 WSRIRAEAERAA----EREPLLASFLHATILNHDSLESA 36
>gnl|CDD|146132 pfam03338, Pox_J1, Poxvirus J1 protein.
Length = 145
Score = 28.4 bits (64), Expect = 6.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 284 LSDFFKSDDVFFAYGSERVLPDDFEL-DVEEVKA 316
L+ F + DD FF Y SE+ DD L D+E +K
Sbjct: 8 LTMFLEDDDSFFKYLSEQ--DDDEALSDIETIKK 39
>gnl|CDD|110802 pfam01831, Peptidase_C16, Peptidase C16 family.
Length = 249
Score = 28.8 bits (64), Expect = 6.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 253 DQCFSTITDIVKLDTGAVRKVYTLNGNQLARLSDFFKSDDVFFAYGSERVLPDDFELDVE 312
DQCF + KL A + + G +A + FF S F A+ + R L D EL ++
Sbjct: 71 DQCF-----VDKLVKSAPKSIILPQGGYVADFAYFFLSQCSFKAHANWRCLECDMELKLQ 125
Query: 313 EVKAI 317
+ A+
Sbjct: 126 GLDAM 130
>gnl|CDD|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase
and related proteins, catalytic TIM barrel domain.
Homocitrate synthase (HCS) catalyzes the condensation of
acetyl-CoA and alpha-ketoglutarate to form homocitrate,
the first step in the lysine biosynthesis pathway. This
family includes the Yarrowia lipolytica LYS1 protein as
well as the Saccharomyces cerevisiae LYS20 and LYS21
proteins. This family belongs to the DRE-TIM
metallolyase superfamily. DRE-TIM metallolyases include
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 262
Score = 28.8 bits (65), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 603 DDISEEAKELISHMLESNPDLRFSAED 629
+I E A E+I + ++RFS+ED
Sbjct: 108 TEIIESAVEVIEFVKSKGIEVRFSSED 134
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 29.4 bits (66), Expect = 7.7
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 419 KQMIENEVNILRSVNHPNIIKLLDEYDTNNELYLVIELIKGGDLF-----DAISKNVKFS 473
K M++N +LR +N E + + I+ + GDL D I + +
Sbjct: 120 KNMVKNTATVLRVIN---------ENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVI 170
Query: 474 EEDSKFMTQSLASALSYLHDNYIVHRDIKPENLL 507
F+ QS + S + ++ + + +L
Sbjct: 171 SARDLFINQSALTGESLPVEKFVEDKRARDPEIL 204
>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16. This model describes
ribosomal S16 of bacteria and organelles [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 78
Score = 26.8 bits (60), Expect = 7.8
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 196 NTLPRSGKFITK--SAPPRVNKTPTSFVVRPRIIIVIRNGIRPRKVVRALLNK 246
+ R G++I + P ++ V RI + G +P VR LL K
Sbjct: 23 SRSRRDGRYIEELGFYNPLTKESRVKLNV-ERIKYWLSKGAQPTDTVRNLLKK 74
>gnl|CDD|221149 pfam11611, DUF4352, Domain of unknown function (DUF4352). Members
of these family are poutative lipoproteins that fall
into the Antigen MPT63/MPB63 (immunoprotective
extracellular protein) superfamily.
Length = 114
Score = 27.6 bits (62), Expect = 8.4
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 159 KVTNIDELEDGKFYICSSSGDQFKKVDYAILNNNNSS 195
V +++ ++ +G +F VD + NN +
Sbjct: 15 TVNSVETSVGSNEFLKPKAGGEFLIVDVTVKNNGDEP 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.399
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,252,746
Number of extensions: 3341476
Number of successful extensions: 4618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3765
Number of HSP's successfully gapped: 384
Length of query: 639
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 536
Effective length of database: 6,369,140
Effective search space: 3413859040
Effective search space used: 3413859040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)