BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6822
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 177 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 177 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 177 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 187 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 225
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 174 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 212
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 187 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 225
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 177 IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 177 IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 37/39 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 175 IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 213
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI+ A+PLLE+FGNAKTVRNDNSSRFGKF+++HF
Sbjct: 215 LEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 251
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 10/61 (16%)
Query: 1 MQYLAAV---------NKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 50
+QY A + ++SP + +QI++A+P LE+FGNAKTVRNDNSSRFGKF+++H
Sbjct: 192 IQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIH 251
Query: 51 F 51
F
Sbjct: 252 F 252
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 192 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 192 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 204 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 204 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 8/59 (13%)
Query: 1 MQYLAAVNKSPSNL--------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA V SP + Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF++++F
Sbjct: 167 IQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 225
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 192 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 192 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 204 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 192 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 192 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 204 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Query: 8 NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
N SNL +QI+EA+P+LE+FGNAKTVRN+NSSRFGKF+++HF
Sbjct: 210 NLRASNL-EDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIRIHF 252
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+N+SRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQF 247
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 43/55 (78%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSS FGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Query: 1 MQYLAAV--NKSPSN-LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
MQ+L V N+SP+ I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Query: 1 MQYLAAV--NKSPSN-LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
MQ+L V N+SP+ I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI+ A+PLLE+FGNA TVRNDNSSRFG F+++HF
Sbjct: 218 LEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHF 254
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI+ A+PLLE+FGNA TVRNDNSSRFG F+++HF
Sbjct: 215 LEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHF 251
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 15/66 (22%)
Query: 1 MQYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 1 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 15/66 (22%)
Query: 1 MQYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 15/66 (22%)
Query: 1 MQYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 15/66 (22%)
Query: 1 MQYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 15/66 (22%)
Query: 1 MQYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++A+P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 210 LEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHF 246
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++A+P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 215 LEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHF 251
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++A+P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 215 LEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHF 251
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++A+P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 211 LEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHF 247
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 15/66 (22%)
Query: 1 MQYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S PS + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++A+P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 215 LEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHF 251
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 35/37 (94%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++A+P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 217 LEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHF 253
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 1 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F +
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 1 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F +
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+ +QI++ +P+LE++GNAKT RN+NSSRFGKF+++HF
Sbjct: 220 LEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIHF 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,427,485
Number of Sequences: 62578
Number of extensions: 37473
Number of successful extensions: 178
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 60
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)