Query psy6822
Match_columns 107
No_of_seqs 135 out of 884
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 19:17:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 99.8 7.5E-20 1.6E-24 163.2 1.8 62 1-62 204-266 (821)
2 COG5022 Myosin heavy chain [Cy 99.8 1E-19 2.3E-24 168.7 2.5 63 1-63 173-238 (1463)
3 cd01379 MYSc_type_III Myosin m 99.8 2E-19 4.4E-24 156.9 1.9 61 1-61 107-167 (653)
4 cd01380 MYSc_type_V Myosin mot 99.7 2.5E-19 5.5E-24 156.9 1.8 62 1-62 107-173 (691)
5 cd01377 MYSc_type_II Myosin mo 99.7 2.9E-19 6.4E-24 156.5 1.9 62 1-62 112-182 (693)
6 cd01381 MYSc_type_VII Myosin m 99.7 3.9E-19 8.5E-24 155.4 1.6 61 1-62 107-167 (671)
7 cd01385 MYSc_type_IX Myosin mo 99.7 4.3E-19 9.4E-24 155.5 1.9 62 1-62 115-178 (692)
8 cd01386 MYSc_type_XVIII Myosin 99.7 1.3E-18 2.9E-23 154.2 2.4 62 1-62 107-169 (767)
9 cd01383 MYSc_type_VIII Myosin 99.7 1.4E-18 3E-23 152.1 2.0 60 1-62 113-172 (677)
10 cd00124 MYSc Myosin motor doma 99.7 1.9E-18 4.1E-23 150.5 2.5 62 1-62 107-168 (679)
11 cd01382 MYSc_type_VI Myosin mo 99.7 2.2E-18 4.7E-23 151.6 2.0 61 1-62 112-172 (717)
12 cd01384 MYSc_type_XI Myosin mo 99.7 2.9E-18 6.3E-23 150.1 1.7 62 1-62 109-173 (674)
13 cd01378 MYSc_type_I Myosin mot 99.7 3.2E-18 6.9E-23 149.6 2.0 62 1-62 107-170 (674)
14 smart00242 MYSc Myosin. Large 99.7 3.4E-18 7.3E-23 149.1 1.9 62 1-62 113-176 (677)
15 cd01387 MYSc_type_XV Myosin mo 99.7 4.6E-18 9.9E-23 148.8 2.0 61 1-62 108-168 (677)
16 KOG0163|consensus 99.7 2.4E-17 5.2E-22 148.1 2.0 59 1-60 165-223 (1259)
17 PF00063 Myosin_head: Myosin h 99.6 3.4E-17 7.3E-22 141.3 -0.1 62 1-62 106-171 (689)
18 KOG0161|consensus 99.6 7.6E-17 1.7E-21 153.4 1.9 63 1-63 189-257 (1930)
19 KOG0164|consensus 99.6 1.2E-16 2.5E-21 142.7 1.5 60 1-60 115-178 (1001)
20 KOG0162|consensus 99.6 3.4E-16 7.4E-21 140.2 2.1 62 1-62 125-188 (1106)
21 KOG0160|consensus 99.5 9.7E-16 2.1E-20 137.9 -2.7 62 1-62 115-177 (862)
22 KOG4229|consensus 99.2 5.8E-12 1.2E-16 115.7 0.5 63 1-63 169-231 (1062)
23 cd01363 Motor_domain Myosin an 92.0 0.11 2.3E-06 38.4 2.0 40 19-58 58-98 (186)
24 KOG2412|consensus 38.4 66 0.0014 29.3 4.9 8 97-104 256-263 (591)
25 KOG1029|consensus 32.8 1.1E+02 0.0024 29.5 5.6 18 65-82 350-367 (1118)
26 PF08199 E2: Bacteriophage E2- 26.5 9.3 0.0002 22.7 -1.6 8 41-48 8-15 (37)
27 PF07946 DUF1682: Protein of u 25.9 2.2E+02 0.0048 23.1 5.7 9 19-27 185-193 (321)
28 PF13682 CZB: Chemoreceptor zi 23.7 58 0.0013 19.4 1.6 17 31-47 20-36 (70)
29 cd08973 BaFpgNei_N_1 Uncharact 21.5 58 0.0013 22.7 1.4 15 39-53 51-65 (122)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.77 E-value=7.5e-20 Score=163.21 Aligned_cols=62 Identities=42% Similarity=0.654 Sum_probs=55.5
Q ss_pred CceeeeecCCCC-chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~-~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++... ..++.+|+++||||||||||+|++||||||||||++|+|+.+|.|.|++-
T Consensus 204 m~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I 266 (821)
T PTZ00014 204 MRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSI 266 (821)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEE
Confidence 689998765433 46899999999999999999999999999999999999999999999863
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.77 E-value=1e-19 Score=168.71 Aligned_cols=63 Identities=56% Similarity=0.827 Sum_probs=57.7
Q ss_pred CceeeeecCCCC---chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhhh
Q psy6822 1 MQYLAAVNKSPS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEE 63 (107)
Q Consensus 1 LqYLA~va~s~~---~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~~ 63 (107)
|||||+++++.. ..++.+|+++||||||||||+|++|||||||||||.|.||..|.|.||+=+
T Consensus 173 mqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~ 238 (1463)
T COG5022 173 MQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIE 238 (1463)
T ss_pred HHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhh
Confidence 799999976544 468999999999999999999999999999999999999999999999854
No 3
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.75 E-value=2e-19 Score=156.87 Aligned_cols=61 Identities=39% Similarity=0.641 Sum_probs=56.0
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEK 61 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k 61 (107)
|+|||.++......+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++
T Consensus 107 ~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~ 167 (653)
T cd01379 107 VQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGAR 167 (653)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEE
Confidence 5788887765556789999999999999999999999999999999999999999999987
No 4
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.75 E-value=2.5e-19 Score=156.85 Aligned_cols=62 Identities=44% Similarity=0.737 Sum_probs=56.0
Q ss_pred CceeeeecCCC-----CchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSP-----SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~-----~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.++++. ...+.++|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 107 ~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 173 (691)
T cd01380 107 MRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANM 173 (691)
T ss_pred HHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEE
Confidence 57999887654 246899999999999999999999999999999999999999999999863
No 5
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.75 E-value=2.9e-19 Score=156.47 Aligned_cols=62 Identities=53% Similarity=0.848 Sum_probs=55.5
Q ss_pred CceeeeecCCCC---------chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPS---------NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~---------~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++... ..+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 112 l~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i 182 (693)
T cd01377 112 IQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADI 182 (693)
T ss_pred HHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEE
Confidence 689998875432 35889999999999999999999999999999999999999999999864
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.74 E-value=3.9e-19 Score=155.36 Aligned_cols=61 Identities=56% Similarity=0.897 Sum_probs=55.2
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++.. ..+..+|++++|||||||||+|++|+||||||||++|+|+..|.|.|++-
T Consensus 107 ~~yLa~~s~~~-~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i 167 (671)
T cd01381 107 LQYLAAISGKH-SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKI 167 (671)
T ss_pred HHHHHHhcCCC-CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEE
Confidence 57888887644 35889999999999999999999999999999999999999999999864
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.74 E-value=4.3e-19 Score=155.52 Aligned_cols=62 Identities=42% Similarity=0.663 Sum_probs=55.6
Q ss_pred CceeeeecCCC--CchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSP--SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~--~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++.+ ...+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 115 l~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i 178 (692)
T cd01385 115 IHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVV 178 (692)
T ss_pred HHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEE
Confidence 57999887543 246899999999999999999999999999999999999999999999874
No 8
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.72 E-value=1.3e-18 Score=154.20 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=54.4
Q ss_pred CceeeeecCCCC-chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~-~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++..+ ....++|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 107 ~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i 169 (767)
T cd01386 107 LEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASL 169 (767)
T ss_pred HHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEE
Confidence 689998876543 23457899999999999999999999999999999999999999999863
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.72 E-value=1.4e-18 Score=152.13 Aligned_cols=60 Identities=52% Similarity=0.795 Sum_probs=54.4
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.++++. .+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 113 ~~yLa~~~~~~--~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i 172 (677)
T cd01383 113 MQYLASLGGGS--GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKI 172 (677)
T ss_pred HHHHHhhCCCC--cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEE
Confidence 57888886543 5889999999999999999999999999999999999999999999864
No 10
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.72 E-value=1.9e-18 Score=150.47 Aligned_cols=62 Identities=53% Similarity=0.807 Sum_probs=56.9
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++.....+.++|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 107 l~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i 168 (679)
T cd00124 107 MKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKI 168 (679)
T ss_pred HHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEE
Confidence 57899888765567999999999999999999999999999999999999999999999863
No 11
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.71 E-value=2.2e-18 Score=151.64 Aligned_cols=61 Identities=52% Similarity=0.790 Sum_probs=54.9
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++++ ..+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 112 l~yLa~~~~~~-~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 172 (717)
T cd01382 112 LRYLTESYGSG-QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFV 172 (717)
T ss_pred HHHHHhhccCC-ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEE
Confidence 57888776544 46889999999999999999999999999999999999999999999864
No 12
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.70 E-value=2.9e-18 Score=150.08 Aligned_cols=62 Identities=45% Similarity=0.777 Sum_probs=55.2
Q ss_pred CceeeeecCCC---CchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSP---SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~---~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++.. ...+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 109 l~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 173 (674)
T cd01384 109 MRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAI 173 (674)
T ss_pred HHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEE
Confidence 57898887533 236899999999999999999999999999999999999999999999863
No 13
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.70 E-value=3.2e-18 Score=149.62 Aligned_cols=62 Identities=47% Similarity=0.751 Sum_probs=55.9
Q ss_pred CceeeeecCCCC--chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPS--NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~--~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.++++.. ..+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 107 l~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i 170 (674)
T cd01378 107 MQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKI 170 (674)
T ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEE
Confidence 579998886543 35889999999999999999999999999999999999999999999864
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.70 E-value=3.4e-18 Score=149.14 Aligned_cols=62 Identities=56% Similarity=0.846 Sum_probs=56.1
Q ss_pred CceeeeecCCC--CchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSP--SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~--~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+||+.++++. ...+..+|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++-
T Consensus 113 l~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i 176 (677)
T smart00242 113 MQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKI 176 (677)
T ss_pred HHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEE
Confidence 57888887664 446899999999999999999999999999999999999999999999864
No 15
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.69 E-value=4.6e-18 Score=148.83 Aligned_cols=61 Identities=59% Similarity=0.851 Sum_probs=54.9
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||.+++.+...+.++|++++|||||||||+|++|+||||||||++|+|+ +|.|.|++-
T Consensus 108 l~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga~i 168 (677)
T cd01387 108 LRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAIT 168 (677)
T ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEEEE
Confidence 5789988766666789999999999999999999999999999999999995 799999864
No 16
>KOG0163|consensus
Probab=99.66 E-value=2.4e-17 Score=148.09 Aligned_cols=59 Identities=49% Similarity=0.798 Sum_probs=51.9
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEE 60 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~ 60 (107)
|+|||..-++. ..|..+|+.+||||||||||+|++||||||||||++|||+.+|++.|-
T Consensus 165 LrYLces~gsa-g~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGG 223 (1259)
T KOG0163|consen 165 LRYLCESWGSA-GPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGG 223 (1259)
T ss_pred HHHHHhccCCC-CcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceech
Confidence 46777655553 358999999999999999999999999999999999999999999873
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.63 E-value=3.4e-17 Score=141.31 Aligned_cols=62 Identities=50% Similarity=0.794 Sum_probs=55.8
Q ss_pred CceeeeecCCCC----chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPS----NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~----~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+||+.++.+.. ..+..+|++++|||||||||+|.+|+||||||||++|+|+.+|.+.|++-
T Consensus 106 l~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i 171 (689)
T PF00063_consen 106 LRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKI 171 (689)
T ss_dssp HHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEE
T ss_pred HHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccce
Confidence 578888876554 46889999999999999999999999999999999999999999999863
No 18
>KOG0161|consensus
Probab=99.63 E-value=7.6e-17 Score=153.38 Aligned_cols=63 Identities=54% Similarity=0.854 Sum_probs=57.1
Q ss_pred CceeeeecCCC----C--chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhhh
Q psy6822 1 MQYLAAVNKSP----S--NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEE 63 (107)
Q Consensus 1 LqYLA~va~s~----~--~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~~ 63 (107)
|+|||+|++++ + ..+..+|+++||||+|||||+|++|+||||||+||+|+|+.+|.|+|+.-+
T Consensus 189 Iqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie 257 (1930)
T KOG0161|consen 189 IQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIE 257 (1930)
T ss_pred HHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHH
Confidence 68999998753 1 368999999999999999999999999999999999999999999998754
No 19
>KOG0164|consensus
Probab=99.61 E-value=1.2e-16 Score=142.73 Aligned_cols=60 Identities=43% Similarity=0.696 Sum_probs=52.5
Q ss_pred CceeeeecCCCC----chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhh
Q psy6822 1 MQYLAAVNKSPS----NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEE 60 (107)
Q Consensus 1 LqYLA~va~s~~----~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~ 60 (107)
|+|+|++...+. ..+...++.|||||||||||+|.+||||||||||+.|.||..|.+-|-
T Consensus 115 MqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG 178 (1001)
T KOG0164|consen 115 MQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGG 178 (1001)
T ss_pred HHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccc
Confidence 688888765433 357788999999999999999999999999999999999999998773
No 20
>KOG0162|consensus
Probab=99.59 E-value=3.4e-16 Score=140.19 Aligned_cols=62 Identities=47% Similarity=0.774 Sum_probs=55.1
Q ss_pred CceeeeecCCCC--chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSPS--NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~~--~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|++.+++.+. ..+.+.|+++||+|||||||+|++|+||||||||++|.|+..|.+.|.|-
T Consensus 125 M~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggki 188 (1106)
T KOG0162|consen 125 MQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKI 188 (1106)
T ss_pred HHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchh
Confidence 678888875443 35788999999999999999999999999999999999999999999874
No 21
>KOG0160|consensus
Probab=99.50 E-value=9.7e-16 Score=137.88 Aligned_cols=62 Identities=47% Similarity=0.744 Sum_probs=57.1
Q ss_pred CceeeeecCCC-CchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822 1 MQYLAAVNKSP-SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE 62 (107)
Q Consensus 1 LqYLA~va~s~-~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~ 62 (107)
|+|||+++++. ...++.+|+.+||||||||||+|++|+||||||||+.|+|+..|+|.||+-
T Consensus 115 m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~ 177 (862)
T KOG0160|consen 115 MEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKI 177 (862)
T ss_pred HHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhccccccee
Confidence 68999998763 347999999999999999999999999999999999999999999999974
No 22
>KOG4229|consensus
Probab=99.16 E-value=5.8e-12 Score=115.73 Aligned_cols=63 Identities=46% Similarity=0.730 Sum_probs=56.0
Q ss_pred CceeeeecCCCCchHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhhh
Q psy6822 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEE 63 (107)
Q Consensus 1 LqYLA~va~s~~~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~~ 63 (107)
++||+.++......+...|+.++|+||+||||+|.+||||||||+||.++|..+|.+.||+-+
T Consensus 169 ~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~ 231 (1062)
T KOG4229|consen 169 WQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIV 231 (1062)
T ss_pred HHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHH
Confidence 357777775445568899999999999999999999999999999999999999999999864
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=92.00 E-value=0.11 Score=38.41 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=32.1
Q ss_pred HhhcCchhhhhc-CccccCCCCCCcccceEEEEecCCCcch
Q psy6822 19 ILEASPLLESFG-NAKTVRNDNSSRFGKFLQVHFKELNTEE 58 (107)
Q Consensus 19 Il~snpILEAFG-NAKT~~NdNSSRFGKfieLqFd~~G~~~ 58 (107)
+.+..+...++. ++.|..|.+|||+..|+.|++...+...
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC
Confidence 455556666788 9999999999999999999997665443
No 24
>KOG2412|consensus
Probab=38.38 E-value=66 Score=29.31 Aligned_cols=8 Identities=88% Similarity=1.095 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q psy6822 97 EEEKKEEE 104 (107)
Q Consensus 97 ~~~~~~~~ 104 (107)
+++|.+++
T Consensus 256 ~eekqeee 263 (591)
T KOG2412|consen 256 EEEKQEEE 263 (591)
T ss_pred HHHHHHHH
Confidence 33333333
No 25
>KOG1029|consensus
Probab=32.78 E-value=1.1e+02 Score=29.51 Aligned_cols=18 Identities=56% Similarity=0.896 Sum_probs=7.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy6822 65 KEKEEEEQKQQQQQQQEK 82 (107)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~ 82 (107)
||++|++.|+...|.+|.
T Consensus 350 kEreE~ekkererqEqEr 367 (1118)
T KOG1029|consen 350 KEREEEEKKERERQEQER 367 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 26
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=26.50 E-value=9.3 Score=22.68 Aligned_cols=8 Identities=75% Similarity=1.456 Sum_probs=6.3
Q ss_pred CcccceEE
Q psy6822 41 SRFGKFLQ 48 (107)
Q Consensus 41 SRFGKfie 48 (107)
|||||||.
T Consensus 8 ~rfgk~ik 15 (37)
T PF08199_consen 8 SRFGKFIK 15 (37)
T ss_pred HHHHHHHH
Confidence 68898874
No 27
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=25.92 E-value=2.2e+02 Score=23.12 Aligned_cols=9 Identities=33% Similarity=0.397 Sum_probs=3.6
Q ss_pred HhhcCchhh
Q psy6822 19 ILEASPLLE 27 (107)
Q Consensus 19 Il~snpILE 27 (107)
|..+.+.|+
T Consensus 185 l~~~~~~l~ 193 (321)
T PF07946_consen 185 LNKAGDYLE 193 (321)
T ss_pred HHhhhhhee
Confidence 333344443
No 28
>PF13682 CZB: Chemoreceptor zinc-binding domain
Probab=23.69 E-value=58 Score=19.40 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=12.9
Q ss_pred CccccCCCCCCcccceE
Q psy6822 31 NAKTVRNDNSSRFGKFL 47 (107)
Q Consensus 31 NAKT~~NdNSSRFGKfi 47 (107)
......+.+.++||+++
T Consensus 20 ~~~~~~~~~~C~fG~Wl 36 (70)
T PF13682_consen 20 DPEPPVDHHQCRFGKWL 36 (70)
T ss_pred CCcCCCCCCCCCCCcee
Confidence 33445588899999998
No 29
>cd08973 BaFpgNei_N_1 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8
Probab=21.46 E-value=58 Score=22.65 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.5
Q ss_pred CCCcccceEEEEecC
Q psy6822 39 NSSRFGKFLQVHFKE 53 (107)
Q Consensus 39 NSSRFGKfieLqFd~ 53 (107)
...|+|||+-|+|+.
T Consensus 51 ~v~RrGK~l~~~~~~ 65 (122)
T cd08973 51 GVRRHGKRLDFEFDN 65 (122)
T ss_pred EEEEEeeEEEEEcCC
Confidence 457899999999974
Done!