RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6822
(107 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 96.9 bits (242), Expect = 5e-25
Identities = 29/51 (56%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Query: 1 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
++YL + + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF
Sbjct: 161 LRYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHF 210
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 96.6 bits (241), Expect = 5e-25
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 1 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 94.9 bits (237), Expect = 2e-24
Identities = 28/54 (51%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 1 MQYLAAVNKSPS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
MQ+L V+ + S I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 93.1 bits (232), Expect = 8e-24
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 90.8 bits (226), Expect = 6e-23
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 11/62 (17%)
Query: 1 MQYLAAV-----------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 49
+ YLA V + + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++
Sbjct: 190 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 249
Query: 50 HF 51
HF
Sbjct: 250 HF 251
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 88.9 bits (221), Expect = 2e-22
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 10/61 (16%)
Query: 1 MQYLAAV----------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 50
+QY A + + +QI++A+P LE+FGNAKTVRNDNSSRFGKF+++H
Sbjct: 192 IQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIH 251
Query: 51 F 51
F
Sbjct: 252 F 252
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 83.2 bits (206), Expect = 2e-20
Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 8/59 (13%)
Query: 1 MQYLAAVNKSPSNL--------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA V SP + Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF++++F
Sbjct: 167 IQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 225
Score = 34.2 bits (79), Expect = 0.004
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEK--EEQQEKEEQQEKKEEEEKKEEE 104
+ + E E E+K QQ + E + E E ++ E
Sbjct: 934 SNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993
Query: 105 E 105
+
Sbjct: 994 D 994
Score = 30.8 bits (70), Expect = 0.065
Identities = 5/63 (7%), Positives = 16/63 (25%), Gaps = 7/63 (11%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQ-------QQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ L + + E +++ ++ + E + E E
Sbjct: 928 QSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 987
Query: 105 EKE 107
+
Sbjct: 988 RLQ 990
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 82.0 bits (203), Expect = 8e-20
Identities = 29/55 (52%), Positives = 43/55 (78%), Gaps = 4/55 (7%)
Query: 1 MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
+QYLA+V + S ++ +QIL+A+P+LE+FGNAKT RN+NSS FGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEK--EEQQEKEEQQEKKEEEEKKEEE 104
+ + E E E+K QQ + E + E E ++ E
Sbjct: 942 SNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 1001
Query: 105 EKE 107
+
Sbjct: 1002 DLH 1004
Score = 32.7 bits (75), Expect = 0.014
Identities = 5/52 (9%), Positives = 16/52 (30%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEE 103
E E+++ ++ + + + E E Q+ ++
Sbjct: 958 YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 24.6 bits (54), Expect = 8.1
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 52 KELNTEEEEKEEGKE--KEEEEQKQQQQQQQEKEEQQ 86
++ + E K E E+ Q+ +
Sbjct: 974 QQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 78.6 bits (194), Expect = 1e-18
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 1 MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
M+Y A V+ S S + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228
Score = 38.2 bits (89), Expect = 2e-04
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
K E ++ E + Q Q++ E+ ++ + ++ E E EK
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Score = 37.4 bits (87), Expect = 3e-04
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+E+ +E K E+ + E E+ + E+ EEE K
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Score = 35.5 bits (82), Expect = 0.002
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 50 HFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+E + + + E E +EQ + ++E+ ++ ++ +E E EKK EE +
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066
Score = 34.7 bits (80), Expect = 0.003
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ L+ +EE + KE + + +++ ++ + + E E+ + +E+ + EKE
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040
Score = 34.3 bits (79), Expect = 0.004
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L++ + + E EEE K + +E+ K ++ + + EKK EE
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013
Score = 33.5 bits (77), Expect = 0.008
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 60 EKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
++E K K E ++ ++ E + + Q++ E+ ++ + ++
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950
Score = 33.2 bits (76), Expect = 0.008
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
LQ +L E + + K+ EE + + + ++ + +++ K E+EE
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Query: 107 E 107
+
Sbjct: 1049 Q 1049
Score = 32.8 bits (75), Expect = 0.014
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
+E+ EKEE ++ Q ++ E ++K ++ K+ E + +E +
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 32.4 bits (74), Expect = 0.018
Identities = 8/55 (14%), Positives = 23/55 (41%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L + + + +++ +E K ++ E E ++ + + E + EE+
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Score = 32.0 bits (73), Expect = 0.021
Identities = 6/56 (10%), Positives = 29/56 (51%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + +EE + +++ + Q +++ ++ ++ + + EQ + +E+ + ++
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039
Score = 32.0 bits (73), Expect = 0.023
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ ++ +E+ K ++EE ++ Q +E E EK+ +E K+ E +E
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 32.0 bits (73), Expect = 0.023
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEE 105
K L + E E E+ + ++ + EE+ + + +EE + +
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Score = 31.2 bits (71), Expect = 0.039
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ +EE K +++ Q + E++ EE +K + E ++ E +
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 31.2 bits (71), Expect = 0.042
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
+ EK E + ++ + E+ E+E + +EE K
Sbjct: 941 NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Score = 31.2 bits (71), Expect = 0.050
Identities = 8/51 (15%), Positives = 26/51 (50%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKE 102
++ + EKEE + ++ K+ + ++K ++ K+ + + +E + +
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 30.8 bits (70), Expect = 0.057
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
T E E+ + E + +++ + +E+ K +E + + EK+
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Score = 30.1 bits (68), Expect = 0.11
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E T EE ++ K + E+ + ++Q + ++E+ ++ + +E E EK+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 29.3 bits (66), Expect = 0.21
Identities = 8/56 (14%), Positives = 24/56 (42%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
K + + K E ++ + + + E+ ++ + + + + K +E+ KE
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Score = 28.2 bits (63), Expect = 0.46
Identities = 5/51 (9%), Positives = 17/51 (33%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ Q ++ ++E ++ K E + + ++ E +
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENK 929
Score = 28.2 bits (63), Expect = 0.62
Identities = 6/63 (9%), Positives = 20/63 (31%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ + K + ++ + + Q + + + +K + E + E
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 105 EKE 107
K+
Sbjct: 919 YKK 921
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.5 bits (139), Expect = 3e-11
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 15/66 (22%)
Query: 1 MQYLAAV---------------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249
Query: 46 FLQVHF 51
F++++F
Sbjct: 250 FIRINF 255
Score = 33.7 bits (77), Expect = 0.007
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L+ E+ EE+EE ++ + E+K+ QQQ + EEQ E+EE +K + EK + K
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Score = 30.2 bits (68), Expect = 0.12
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
K +Q +L + EE+E ++K + E+ + ++ E+ E Q K +E+K E
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 105 EK 106
E+
Sbjct: 1011 ER 1012
Score = 29.8 bits (67), Expect = 0.13
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + E + +EEEE+ QQ Q +++K +QQ + +++ +EEE +++ + E
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Score = 29.8 bits (67), Expect = 0.14
Identities = 9/60 (15%), Positives = 32/60 (53%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
++ +E ++ + K+K +++ ++Q +E+E ++K + ++ + + K+ E+
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Score = 29.0 bits (65), Expect = 0.26
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
LQ + E EE + + ++++ ++ E E + E+EE++ ++ + EKK+ +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 105 EK 106
++
Sbjct: 955 QQ 956
Score = 28.6 bits (64), Expect = 0.31
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
K L+ +L T E+EE + + + + + E E + +KEE+ ++ E+ K++ E
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 105 EK 106
+
Sbjct: 1067 GE 1068
Score = 28.3 bits (63), Expect = 0.47
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
KE EE + EE+++ + + K + + + E + ++E+K +E E
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Score = 28.3 bits (63), Expect = 0.48
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + K++E EE + + + E+EE++ ++ Q EKK+ +++ + E++
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 27.9 bits (62), Expect = 0.60
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+L +EEE + + E+E Q+ ++ E + ++ E EK + E
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Score = 27.9 bits (62), Expect = 0.61
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
EE E EEEE++ QQ Q ++K+ QQ+ + +E+ EEEE ++ +
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Score = 27.9 bits (62), Expect = 0.63
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ E E E EE + ++Q+ +E E E + E++EE ++ + EK+
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Score = 27.5 bits (61), Expect = 0.92
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L+ +E ++ + K + + K+ + E+Q K ++ K EE +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 27.1 bits (60), Expect = 1.2
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
+ E++ K ++ ++ + + +E E E+ K E++K++ E+
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Score = 27.1 bits (60), Expect = 1.4
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEE-QQEKEEQQEKKEEEEKKEEEEKE 107
+ EK K ++ + + + + +E++ +E+ + EE+E
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Score = 27.1 bits (60), Expect = 1.4
Identities = 11/64 (17%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQ----QQEKEEQQEKEEQQEKKEEEEKKE 102
L+ H +L + E ++ + K E++++ ++ + E E+ + Q++ + K+
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Query: 103 EEEK 106
+++K
Sbjct: 1181 DDDK 1184
Score = 26.7 bits (59), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L+V K+ +E E+ K K E E +Q E + Q + + Q K+EEE + +
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Score = 26.7 bits (59), Expect = 1.8
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 51 FKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L +++E EE + E ++++++ Q+ + +++K +QQ EE+ +EEE
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Score = 26.3 bits (58), Expect = 2.1
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
++ E + +EEE +Q+ Q ++ + + K+ + + E++ + KE
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Score = 26.3 bits (58), Expect = 2.2
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
EE +K+E E+ + + + +EE++ ++ Q +K++ +++ + +E
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Score = 26.3 bits (58), Expect = 2.4
Identities = 10/62 (16%), Positives = 24/62 (38%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
K ++ + + + + ++ EE E+EE+ + + + K E E E
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 105 EK 106
+
Sbjct: 1046 VR 1047
Score = 26.3 bits (58), Expect = 2.4
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
+ KEL + + E K +E+ + + + E EE + + ++++ EE E E +
Sbjct: 876 AEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935
Score = 26.3 bits (58), Expect = 2.5
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 47 LQVHFKELNTE----EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKE 102
+EL + +E+ E K + +KQ++ +E E + + E +++
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Query: 103 EEEKE 107
Sbjct: 1174 RGSDY 1178
Score = 26.0 bits (57), Expect = 3.0
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ +E+ +E+E QK Q ++ + ++ E+ E++ K +E++
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Score = 25.6 bits (56), Expect = 4.0
Identities = 11/51 (21%), Positives = 32/51 (62%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+++E + E E + ++++++ ++ Q EK++ Q++ + E++ EEE+
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Score = 25.2 bits (55), Expect = 5.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L K L + +EEE+ K + + + E + E + KKEE+ ++E E+
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Score = 25.2 bits (55), Expect = 6.1
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 52 KELNTEEEEKEEGKEK------EEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEE 105
+L E + EE EEEE+ + + + K E E + K+EE+ ++E E
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 106 KE 107
K
Sbjct: 1060 KI 1061
Score = 24.8 bits (54), Expect = 6.9
Identities = 6/56 (10%), Positives = 26/56 (46%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
++ E++ +++ + K+++ ++ + ++E+K + K + + E
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038
Score = 24.4 bits (53), Expect = 9.4
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E++ + KE++ E++ EE+++ + + K + E E +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 34.0 bits (78), Expect = 0.005
Identities = 10/65 (15%), Positives = 21/65 (32%)
Query: 43 FGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKE 102
K + +++L + G EK E + + + K EK+ +
Sbjct: 1855 LVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTK 1914
Query: 103 EEEKE 107
+ K
Sbjct: 1915 QFSKT 1919
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 33.0 bits (76), Expect = 0.010
Identities = 11/53 (20%), Positives = 30/53 (56%)
Query: 53 ELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEE 105
+ + + E E +EEE K++++ ++ +E+EE+++ K ++ +K +
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 28.7 bits (65), Expect = 0.26
Identities = 8/47 (17%), Positives = 28/47 (59%)
Query: 61 KEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + EE ++++ ++++++ E ++E++E++ K ++ EK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 27.2 bits (61), Expect = 1.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEE 99
K EE +EE KEE+E + +E+EE+++ + ++ +K +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 26.8 bits (60), Expect = 1.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 48 QVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEE 97
V + T EE EE + +EE++ + E+EE+++K + ++ ++
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 24.5 bits (54), Expect = 9.2
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 79 QQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
K E E+ ++E+ +EEK++ +++
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDEA 242
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 32.4 bits (74), Expect = 0.016
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E E + + + ++ + E EE + + E+ + E
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
Score = 30.9 bits (70), Expect = 0.048
Identities = 5/56 (8%), Positives = 18/56 (32%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + E E+ + + + ++ K E E + ++ + +
Sbjct: 182 EAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 28.9 bits (65), Expect = 0.22
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
EE E + + + E+ + E +E + + E+
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAG 227
Score = 28.5 bits (64), Expect = 0.30
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
T EE + E + + + +E E + + ++ + E E+
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGT 228
Score = 27.8 bits (62), Expect = 0.66
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E+ E + + + + +E + E EE + + E+
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNA 226
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 31.9 bits (71), Expect = 0.027
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 53 ELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E T E + K EE+ + + E + + +++ E K E + +E K
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135
Score = 30.3 bits (67), Expect = 0.091
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
TE E + EE+ + + + + + +E + K E + +E +
Sbjct: 85 TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPA 136
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 30.1 bits (67), Expect = 0.12
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 71 EQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEE 105
+ + +Q++++ Q++ E + E + E
Sbjct: 10 DLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 28.6 bits (63), Expect = 0.41
Identities = 4/40 (10%), Positives = 18/40 (45%)
Query: 68 EEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+++++++Q Q++ E + + + E + +
Sbjct: 13 RIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPD 52
Score = 28.2 bits (62), Expect = 0.52
Identities = 2/37 (5%), Positives = 14/37 (37%)
Query: 68 EEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ +Q+++Q + + + + + + +
Sbjct: 10 DLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAA 46
Score = 27.0 bits (59), Expect = 1.5
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 66 EKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + +Q+++Q Q E+ E + E K
Sbjct: 10 DLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKP 51
Score = 26.7 bits (58), Expect = 2.0
Identities = 4/40 (10%), Positives = 14/40 (35%)
Query: 68 EEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
++ Q+++Q Q+ + + + E +
Sbjct: 14 IDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDA 53
Score = 25.9 bits (56), Expect = 3.7
Identities = 2/23 (8%), Positives = 13/23 (56%)
Query: 71 EQKQQQQQQQEKEEQQEKEEQQE 93
+ + ++++EQ +++ ++
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERA 30
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 29.4 bits (66), Expect = 0.20
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 64 GKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
G ++E+ +++ + Q E+ +E + QE + E+ EE+ +
Sbjct: 14 GFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQ 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 29.2 bits (66), Expect = 0.20
Identities = 6/41 (14%), Positives = 19/41 (46%)
Query: 66 EKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
+K + + ++ +++ + K+ + +KK + KK
Sbjct: 732 QKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 29.2 bits (66), Expect = 0.24
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 55 NTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEK 100
+ +K + K E +++ + + K+ + +K+ + KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 29.1 bits (65), Expect = 0.20
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEE 99
EE E++ +E EE +++ +++ EEQ E E E+ +
Sbjct: 208 EEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNV 250
Score = 26.0 bits (57), Expect = 2.7
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 59 EEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + + +E E+Q +E E+ EEE KEE +E
Sbjct: 187 ALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEE 235
Score = 25.3 bits (55), Expect = 4.0
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 59 EEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + + + + +E +Q+ EE +E E+E
Sbjct: 179 REVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEE 227
Score = 24.9 bits (54), Expect = 7.1
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 64 GKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
G + + + +E E+Q ++ E+ EEE +
Sbjct: 186 GALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAK 229
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.27
Identities = 9/53 (16%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEK-----EEQQEKKEEEEKKEEEE 105
EE+++ +E + + +Q+ +++ ++ E+ EQ EK + + ++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 28.2 bits (62), Expect = 0.38
Identities = 9/51 (17%), Positives = 24/51 (47%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ K +E E+ +K ++ Q + EQ EK + + ++ ++ + +
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 27.0 bits (59), Expect = 1.1
Identities = 8/48 (16%), Positives = 26/48 (54%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEE 103
+ + + E + +++Q+++ QE + + EQ+ +++ ++ EE
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 25.9 bits (56), Expect = 3.1
Identities = 7/53 (13%), Positives = 27/53 (50%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
L E E + +E++ + ++ + E++ ++ +++ +E +++ E+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.9 bits (64), Expect = 0.30
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 51 FKELNTEEEEKEEGKEKEEE-EQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
++ E + + KE+E E K+ +++ EK ++ +K Q EKK+ E+KK+ + E
Sbjct: 335 LQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDE 392
Score = 26.6 bits (58), Expect = 1.7
Identities = 15/76 (19%), Positives = 36/76 (47%)
Query: 31 NAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEE 90
++ + LQ ++ E + + KE+E + Q+ +++E E ++ ++E
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 91 QQEKKEEEEKKEEEEK 106
EK + +K ++EK
Sbjct: 364 LHEKFDRLKKLHQDEK 379
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 28.4 bits (63), Expect = 0.44
Identities = 8/56 (14%), Positives = 25/56 (44%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+EL +E+ ++ + ++Q + + + Q + E +KK+++ +
Sbjct: 283 EELGWQEDFEKILTAQGGMGDNSKEQLLEIVHDLENLSLDQSEHESADKKDKKLQR 338
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 28.3 bits (62), Expect = 0.53
Identities = 8/54 (14%), Positives = 25/54 (46%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEE 98
+ L+ +++ E+ K++ ++E E ++ Q+ + Q + + Q +
Sbjct: 302 ERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 27.5 bits (60), Expect = 0.77
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 62 EEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
+ G K E E + Q EKE + + ++ + + + + + +
Sbjct: 305 KRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQG 349
Score = 27.5 bits (60), Expect = 0.90
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 61 KEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
K G++ E E+ + Q +++ E + +E + + + + + + +
Sbjct: 305 KRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGD 351
Score = 27.1 bits (59), Expect = 1.1
Identities = 4/54 (7%), Positives = 21/54 (38%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEE 105
+ L + E +++ +++ + + +E + + Q + + + +
Sbjct: 302 ERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 26.4 bits (57), Expect = 2.4
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 42 RFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEE 97
R + + K N + + + EKE E ++ Q+ + + + Q + + +
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 28.2 bits (62), Expect = 0.55
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 53 ELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E+ T +E E + EQ+ + + +++K Q + E+ K+ E + E
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE 717
Score = 27.5 bits (60), Expect = 0.97
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+E + E + +E ++Q+ Q E E+ +++ + E + K
Sbjct: 669 QEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724
Score = 27.1 bits (59), Expect = 1.1
Identities = 8/52 (15%), Positives = 25/52 (48%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + +E + + Q+ +QE + E+++ ++ E E+ ++E +
Sbjct: 658 VQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLEL 709
Score = 27.1 bits (59), Expect = 1.3
Identities = 7/56 (12%), Positives = 20/56 (35%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ E +K + + E+ +K+ + + + + + E + E E
Sbjct: 683 EARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGE 738
Score = 26.7 bits (58), Expect = 1.6
Identities = 9/56 (16%), Positives = 19/56 (33%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
L ++ + EK +E + + E + + E + E + E E
Sbjct: 686 GRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSV 741
Score = 26.7 bits (58), Expect = 1.8
Identities = 6/56 (10%), Positives = 25/56 (44%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ + + + E Q+ + + ++ EQ+ + + +K ++ + E+ ++
Sbjct: 649 RTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704
Score = 26.7 bits (58), Expect = 1.9
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + + E ++ +Q+ + + E+Q+ +Q E ++ ++ E E
Sbjct: 661 AIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAM 712
Score = 26.7 bits (58), Expect = 1.9
Identities = 8/51 (15%), Positives = 22/51 (43%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E+E + + ++ +Q + ++ ++E E + E + + E E
Sbjct: 681 EQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAE 731
Score = 26.3 bits (57), Expect = 2.1
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + E+ E QK Q + EK ++ E + E + +
Sbjct: 676 EAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEA 726
Score = 26.3 bits (57), Expect = 2.2
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E+ ++E E E + + E + E + + E + + + +
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749
Score = 25.9 bits (56), Expect = 3.3
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + + Q + + Q E + E E ++ +E E + E
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLE 778
Score = 24.4 bits (52), Expect = 9.9
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
K L+ E EK + E E + + + E + + E E + + +
Sbjct: 692 KILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 27.3 bits (61), Expect = 0.71
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 56 TEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+ +E+K + EE Q ++ + E + E+ + E+ E + E
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAE 53
Score = 25.8 bits (57), Expect = 3.1
Identities = 7/53 (13%), Positives = 24/53 (45%)
Query: 55 NTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+++E++ EG+ EE Q ++ + + E ++ ++ + + +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEA 54
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 27.3 bits (61), Expect = 0.92
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 48 QVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQE 87
+ + L +E E+ K +EEE + +++++++E++E+ +
Sbjct: 222 KTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.2 bits (61), Expect = 0.93
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
KEL + +E + K+ + Q+ ++ EQ+ +E+ ++ K+ ++K+ +E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENS 452
Score = 26.8 bits (60), Expect = 1.7
Identities = 9/58 (15%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 52 KELNTEEEEKEEGKEKEEEE-----QKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
++L+ +EK+ + +E E + +Q+ +++ E+ ++ ++++ +E E ++
Sbjct: 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDD 458
Score = 25.6 bits (57), Expect = 3.9
Identities = 6/56 (10%), Positives = 30/56 (53%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
L E++ +E +++++ + Q+ ++ E+ +++ ++ ++ +E++ +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 27.1 bits (60), Expect = 1.1
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 61 KEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
KE K +E EE+ ++ + +EK E++ E+QQ++++ + E ++
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 26.4 bits (58), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 51 FKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
F + E +++ E +EK + +++ ++E+ E+Q+K EQ E +
Sbjct: 376 FLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGV 429
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A
{Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Length = 212
Score = 26.8 bits (59), Expect = 1.3
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 71 EQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
E QQ +++ ++ + E+ + + +
Sbjct: 1 ESNQQIADFDKEKATLDEADIDERMKLAQAFNDS 34
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 26.8 bits (59), Expect = 1.5
Identities = 7/48 (14%), Positives = 21/48 (43%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ K EQK+ ++++ + +++ E +E + E+ +
Sbjct: 193 VMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 26.0 bits (57), Expect = 3.0
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 51 FKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQE 93
F E++E +E+E E +++ + ++ E ++ + +
Sbjct: 198 FYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 25.2 bits (55), Expect = 4.9
Identities = 6/52 (11%), Positives = 22/52 (42%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEE 103
+E + E+++ ++++ E E++ E ++ + E+ +
Sbjct: 189 EEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 25.2 bits (55), Expect = 5.3
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 59 EEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + + + ++++ + + EQ+E +EEE + EEK
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKV 224
Score = 24.4 bits (53), Expect = 10.0
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 60 EKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + +E E + E+++ +EE+ + EE+ E +E E
Sbjct: 184 ELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGE 231
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 1.6
Identities = 2/40 (5%), Positives = 13/40 (32%)
Query: 68 EEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
++ + ++ ++ K+ + E + +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 26.6 bits (58), Expect = 1.9
Identities = 3/39 (7%), Positives = 12/39 (30%)
Query: 62 EEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEK 100
+ + ++ ++ K+ + E Q +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 26.6 bits (58), Expect = 2.0
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 65 KEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ + ++ KE +Q + E + E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 25.4 bits (55), Expect = 4.9
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 59 EEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEE 98
+ K ++ ++ +Q + E + E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 26.8 bits (60), Expect = 1.6
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
KEL + +E + K+ + Q+ ++ EQ+ +E+ ++ K+ ++K+ +E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENS 452
Score = 26.8 bits (60), Expect = 1.7
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEE 105
++L+ +EK+ + +E E K + E+ +++ E+ ++ +E++ +E E
Sbjct: 401 QKLDEVRKEKDAAVQSQEFE-KAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 25.6 bits (57), Expect = 4.2
Identities = 6/56 (10%), Positives = 30/56 (53%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
L E++ +E +++++ + Q+ ++ E+ +++ ++ ++ +E++ +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase
,hydrolas transferase, hydrolase; 1.30A {Streptococcus
agalactiae}
Length = 216
Score = 26.4 bits (58), Expect = 1.7
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 71 EQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
E Q Q + ++ ++E + + +
Sbjct: 5 ESNNQTQDFERAAKKLSQKEINRRMALAQAYNDS 38
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_C
Length = 243
Score = 26.2 bits (58), Expect = 2.1
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
E K + K+ +KE + ++++ + E+++
Sbjct: 195 YEPNPAKKFGVKTPIPDNVIIHPPKQITDDKEIRTAVEQQQPAQPEQQQ 243
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 26.1 bits (58), Expect = 2.2
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 44 GKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQE 81
KF+ V +E E KE E Q +Q E
Sbjct: 234 AKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAE 271
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
elongation complex, transcription/DNA/RNA complex; 2.10A
{Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Length = 883
Score = 26.4 bits (56), Expect = 2.3
Identities = 4/59 (6%), Positives = 21/59 (35%)
Query: 45 KFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEE 103
+ + + + E + ++ ++Q E + + + ++ E++ +
Sbjct: 2 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLK 60
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 26.0 bits (57), Expect = 2.7
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
L+ KE++ E+EKE+ + E K ++ + + +E+ ++ + E
Sbjct: 193 LKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEF 252
Query: 107 E 107
+
Sbjct: 253 D 253
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 25.6 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 77 QQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
Q Q+E+++Q +E+++ + E EK EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 25.9 bits (56), Expect = 3.3
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 58 EEEKEE-------------GKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
EE + + K ++ ++++ E+E+++E EE+++++E +K +E
Sbjct: 800 EEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKE 859
Query: 105 EKE 107
KE
Sbjct: 860 TKE 862
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 25.7 bits (57), Expect = 3.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 44 GKFLQVHFKELNTEEEEKEEG--KEKEEEEQKQQQQQQQE 81
GKF+ V + + E G KE EE +K+Q + +
Sbjct: 216 GKFITVDDEA--MKTAETAGGYAKEMGEEFRKKQAEAVLK 253
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 25.5 bits (55), Expect = 3.6
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 71 EQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEK 106
E K + + + ++E E E K++++
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDG 36
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 25.5 bits (56), Expect = 3.7
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 53 ELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E E+ +EE + EEE ++ EE E E+ EE + + E
Sbjct: 16 EPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAE 70
Score = 24.7 bits (54), Expect = 7.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E+ EK+ ++ +E +++Q ++E Q E+E EE +E E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPA 52
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 25.5 bits (56), Expect = 3.8
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 42 RFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKK 101
F K++ + K E+ + +EE ++ + +QE + K EE K
Sbjct: 128 YFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVK 187
Query: 102 EEEEKE 107
+E
Sbjct: 188 GQELAP 193
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 25.6 bits (55), Expect = 4.1
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
E EE + + EE Q E+ + ++ E+ ++++ +E+
Sbjct: 287 DEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDED 339
Score = 25.2 bits (54), Expect = 5.2
Identities = 4/54 (7%), Positives = 25/54 (46%)
Query: 54 LNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
L ++ +++E E+ + + ++ ++ + + + ++ +E ++ +
Sbjct: 281 LASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDD 334
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 25.4 bits (55), Expect = 4.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 77 QQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
Q+EK+ + KEE++ KE+++ + E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.6 bits (55), Expect = 4.6
Identities = 13/50 (26%), Positives = 32/50 (64%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+E+ ++ K+ E E Q++ +Q ++ E Q ++ E++ ++ E+EK E ++
Sbjct: 347 KEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQ 396
Score = 24.8 bits (53), Expect = 6.6
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 58 EEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
E + K+ E E ++ + + +EK ++ + E + ++ E+ K+ E +
Sbjct: 325 REHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQ 374
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 25.1 bits (54), Expect = 4.9
Identities = 10/48 (20%), Positives = 13/48 (27%)
Query: 57 EEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ EE KE+EEEE E E +
Sbjct: 207 FYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQ 254
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 24.9 bits (54), Expect = 5.3
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 51 FKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKK 95
+ L + EEK + K ++K +Q ++KE + + K
Sbjct: 148 KQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 25.2 bits (54), Expect = 6.6
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 55 NTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKE 102
+ EEE +E + + Q E + +E+ E
Sbjct: 452 DPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGA 499
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 25.0 bits (53), Expect = 6.7
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 55 NTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEE 103
+ +++E EK+E +++ + +QEKE+ + E+ K + E+ E
Sbjct: 587 DENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPE 635
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 24.6 bits (54), Expect = 7.4
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 52 KELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQE-KEEQQEKKEEEEKKEEEEKE 107
K + E + + + + + + + E +K E++ K+
Sbjct: 142 KNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKD 198
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 24.9 bits (55), Expect = 7.4
Identities = 5/44 (11%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 65 KEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEE-EEKKEEEEKE 107
+ ++K +++ +++ ++ + +E E +EE
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETV 46
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor
suppressor, breast cancer susceptibility, DNA-binding;
3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3
b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Length = 738
Score = 24.9 bits (53), Expect = 8.0
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 51 FKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ E + +EE+E + + QQ+K E + E K+ EE +
Sbjct: 374 WVEKTVSGLYIFRSEREEEKEALRFAEAQQKKLEALFTKVHTEFKDHEEDTTQR 427
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 24.5 bits (54), Expect = 8.1
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 65 KEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEE 98
KE K+ +E+ ++ +E+ E+ ++E
Sbjct: 336 SSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 369
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 24.2 bits (52), Expect = 9.6
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 63 EGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEE 99
+ E + E+ E++E+ E+
Sbjct: 217 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 24.3 bits (53), Expect = 9.8
Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 46 FLQVHFKELNTEEEEKEEGKE-KEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
FL+ F++ + ++ +E +E +Q + + + Q++ + +K
Sbjct: 404 FLE-QFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLIS 462
Query: 105 EKE 107
E++
Sbjct: 463 EED 465
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.291 0.114 0.275
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,376,413
Number of extensions: 72841
Number of successful extensions: 2683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 962
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
S2: 51 (23.9 bits)