RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6822
(107 letters)
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 62.5 bits (151), Expect = 2e-13
Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 1 MQYLAAV-NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
M+Y A V + + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 115 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 166
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 59.7 bits (144), Expect = 2e-12
Identities = 30/57 (52%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Query: 1 MQYLAAVNKSP----SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
+QYLA+V S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 146 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNN 202
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 58.9 bits (142), Expect = 3e-12
Identities = 28/54 (51%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 1 MQYLAAVNKSPS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
MQ+L V+ + S I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 107 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 160
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 57.8 bits (139), Expect = 8e-12
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 11/64 (17%)
Query: 1 MQYLAAVNKSP-----------SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 49
+QY A + S + +QI+ A+PLLE+FGNAKTVRNDNSSRFGKF+++
Sbjct: 144 IQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRI 203
Query: 50 HFKE 53
HF
Sbjct: 204 HFGA 207
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 57.8 bits (139), Expect = 9e-12
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 11/64 (17%)
Query: 1 MQYLAAVNKSPSNL-----------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 49
+ YLA V + + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++
Sbjct: 142 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 201
Query: 50 HFKE 53
HF
Sbjct: 202 HFGP 205
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 57.1 bits (137), Expect = 2e-11
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 15/68 (22%)
Query: 1 MQYLAAVNKSP---------------SNLITEQILEASPLLESFGNAKTVRNDNSSRFGK 45
+QYLA V S + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 112 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 171
Query: 46 FLQVHFKE 53
F++++F
Sbjct: 172 FIRINFDV 179
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 27.4 bits (61), Expect = 0.28
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 77 QQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
Q Q+E+++Q +E+++ + E EK EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.8 bits (57), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 77 QQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
+ Q E +Q KEE+ + KEE EK +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 25.3 bits (54), Expect = 1.8
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 70 EEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEE 104
K+ + ++ +E+ ++ EE E+ ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 23.8 bits (50), Expect = 5.5
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 65 KEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEE 98
KE K+ +E+ ++ +E+ E+ ++E
Sbjct: 331 SSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 24.9 bits (53), Expect = 2.4
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 62 EEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKK 95
+ E+ +QQ + + +EQ + + K+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 23.7 bits (50), Expect = 5.6
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 77 QQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE 107
+Q+ E+ + +++ E + +E+ + E
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 24.0 bits (51), Expect = 2.9
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 40 SSRFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKE 83
RF K + V ++ K K K EE ++++++++ ++
Sbjct: 60 ECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 24.4 bits (53), Expect = 3.4
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 69 EEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKK 101
E +K QQQ + Q++ + +K +
Sbjct: 81 ETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNE 113
Score = 23.7 bits (51), Expect = 5.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 64 GKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKE 96
+ E E QQQQQQ+ +++ + QQ+++E
Sbjct: 162 NPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEE 194
Score = 23.7 bits (51), Expect = 6.8
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 68 EEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEK 100
E E+ QQQ ++ QQ+ ++ +K +
Sbjct: 81 ETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNE 113
Score = 23.3 bits (50), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 64 GKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEE 97
G E + QQQQQQ+ +++ + Q+++EE
Sbjct: 161 GNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEE 194
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 23.7 bits (50), Expect = 6.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 47 LQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKE 96
++ +EL+ E ++ K+ EE + QQQ+ + +++ ++QE K
Sbjct: 8 IESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKN 57
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 211
Score = 23.1 bits (48), Expect = 8.8
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 74 QQQQQQQEKEEQQEKEEQQEKKEEEEKK 101
Q + KE+++ + + + +
Sbjct: 4 QLLENWLLKEQEKIQTKYRHLNHISVVE 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.291 0.114 0.275
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 337,242
Number of extensions: 14807
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 256
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
S2: 47 (22.1 bits)