Query psy6829
Match_columns 369
No_of_seqs 266 out of 1824
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:31:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.2E-22 4.1E-27 173.8 12.8 125 161-286 10-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 1.3E-22 4.6E-27 172.6 12.7 121 160-285 14-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 1.3E-22 4.5E-27 172.0 9.6 121 161-285 7-144 (146)
4 1jl1_A Ribonuclease HI; RNAse 99.9 4.3E-22 1.5E-26 170.6 10.0 124 161-288 7-146 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.9 6.4E-22 2.2E-26 170.0 10.2 123 161-287 9-148 (158)
6 3p1g_A Xenotropic murine leuke 99.9 9.5E-22 3.3E-26 169.7 11.3 124 160-287 25-158 (165)
7 2kq2_A Ribonuclease H-related 99.9 3.4E-22 1.2E-26 169.7 5.7 123 160-288 8-140 (147)
8 1ril_A Ribonuclease H; hydrola 99.8 1E-21 3.5E-26 170.0 7.4 124 160-287 10-150 (166)
9 2lsn_A Reverse transcriptase; 99.8 2.5E-20 8.7E-25 160.6 10.0 124 160-284 9-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 4.4E-19 1.5E-23 148.9 12.7 121 160-285 5-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 3E-19 1E-23 149.4 9.8 120 161-285 6-137 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 2.3E-18 8E-23 176.0 11.5 113 161-283 439-555 (555)
13 2ehg_A Ribonuclease HI; RNAse 99.7 4E-18 1.4E-22 144.7 10.7 120 161-285 4-134 (149)
14 2zd1_A Reverse transcriptase/r 99.7 2E-18 6.7E-23 176.6 9.5 113 161-282 442-557 (557)
15 1zbf_A Ribonuclease H-related 99.3 6.7E-13 2.3E-17 111.2 3.9 114 160-277 13-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 1.3E-10 4.4E-15 95.7 9.0 74 160-235 7-84 (134)
17 2z3g_A Blasticidin-S deaminase 40.5 38 0.0013 26.8 4.9 53 171-224 26-80 (130)
18 2nx8_A TRNA-specific adenosine 39.7 42 0.0014 28.2 5.3 52 171-222 35-90 (179)
19 2lnd_A De novo designed protei 38.4 49 0.0017 23.9 4.6 63 241-304 37-99 (112)
20 1wkq_A Guanine deaminase; doma 36.7 50 0.0017 27.2 5.2 52 171-222 31-86 (164)
21 1rw3_A POL polyprotein; RNA an 34.8 11 0.00039 36.4 1.1 42 192-234 386-428 (455)
22 2fr5_A Cytidine deaminase; tet 34.5 57 0.002 26.4 5.1 53 171-224 35-91 (146)
23 2b3j_A TRNA adenosine deaminas 34.2 79 0.0027 25.8 6.0 52 171-222 26-81 (159)
24 2a8n_A Cytidine and deoxycytid 33.4 54 0.0019 26.2 4.8 52 171-222 23-78 (144)
25 1wwr_A TRNA adenosine deaminas 33.3 62 0.0021 26.9 5.3 52 171-222 42-97 (171)
26 1z3a_A TRNA-specific adenosine 28.2 75 0.0026 26.2 4.9 52 171-222 28-83 (168)
27 1uwz_A Cytidine deaminase; CDD 26.8 97 0.0033 24.6 5.2 53 171-224 23-79 (136)
28 1ea9_C Cyclomaltodextrinase; h 24.4 37 0.0013 33.9 2.7 68 199-272 170-249 (583)
29 3dh1_A TRNA-specific adenosine 22.1 1.1E+02 0.0039 25.7 4.9 40 171-210 45-88 (189)
30 1j0h_A Neopullulanase; beta-al 20.8 46 0.0016 33.3 2.6 74 199-277 174-258 (588)
31 2d30_A Cytidine deaminase; pur 20.8 1.3E+02 0.0046 24.0 4.9 67 171-245 32-102 (141)
32 1wzl_A Alpha-amylase II; pullu 20.6 47 0.0016 33.2 2.6 67 200-272 172-250 (585)
33 1r5t_A Cytidine deaminase; zin 20.2 2E+02 0.0068 22.9 5.9 54 171-224 31-88 (142)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.88 E-value=1.2e-22 Score=173.82 Aligned_cols=125 Identities=22% Similarity=0.221 Sum_probs=97.9
Q ss_pred ccccccCCCCCC---ceEEEEEeC--C-eeEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcC
Q psy6829 161 VDLSLYGSKTIQ---NTSCAVYAG--G-SAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK 234 (369)
Q Consensus 161 i~td~s~~~~~~---~~G~a~~~~--~-~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~ 234 (369)
||||||+..+++ ..|+|++.. + ...+..+...+|++.||+.|++.||+.+.+.+..++.|+|||+++++.|.++
T Consensus 10 iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~ 89 (154)
T 2qkb_A 10 VYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNW 89 (154)
T ss_dssp EEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTH
T ss_pred EEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhh
Confidence 999999976543 478888832 2 2345566667899999999999999999887789999999999999999874
Q ss_pred C---------CCc--H-HHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCCC
Q psy6829 235 N---------TSI--P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAE 286 (369)
Q Consensus 235 ~---------~~~--~-~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~~ 286 (369)
. ..+ + ....+++.+..+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 90 ~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 90 VQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 1 111 1 12345555555544 45799999999999999999999999998764
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.88 E-value=1.3e-22 Score=172.58 Aligned_cols=121 Identities=23% Similarity=0.226 Sum_probs=92.5
Q ss_pred cccccccCCCCCCceEEEEEe-CCeeEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCC---
Q psy6829 160 VVDLSLYGSKTIQNTSCAVYA-GGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN--- 235 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~~-~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~--- 235 (369)
.|||||++..+++..|+|++. .+......+ ..+|++.||+.|+..||+.+ ..++.|+|||++++++|.++.
T Consensus 14 ~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~w~~~W 88 (150)
T 3qio_A 14 TFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQWIHNW 88 (150)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHHHHHHH
Confidence 499999999888777888773 222233344 47899999999999999986 489999999999999998752
Q ss_pred --------CCcH-HHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCC
Q psy6829 236 --------TSIP-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 285 (369)
Q Consensus 236 --------~~~~-~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~ 285 (369)
...+ ..+++++.+..+..++..|.|.|||||+|++|||.||+||++|+..
T Consensus 89 ~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 89 KKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp CC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred hhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 1111 1234444444333567899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.87 E-value=1.3e-22 Score=172.00 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=90.7
Q ss_pred ccccccCCCCCCceEEEEE--eCCee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhc-CC
Q psy6829 161 VDLSLYGSKTIQNTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN-KN 235 (369)
Q Consensus 161 i~td~s~~~~~~~~G~a~~--~~~~~--~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~-~~ 235 (369)
||||||+..+++..|+|++ .++.. .+..++ .+|++.||+.|++.||+.+.+ ..++.|+|||++|++.|.+ +.
T Consensus 7 iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~ 83 (146)
T 3h08_A 7 IYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWL 83 (146)
T ss_dssp EEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHH
T ss_pred EEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHH
Confidence 8999999988777888877 44432 223333 689999999999999999976 6899999999999999987 21
Q ss_pred ---------CCc--H-HHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCC
Q psy6829 236 ---------TSI--P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 285 (369)
Q Consensus 236 ---------~~~--~-~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~ 285 (369)
..+ + ..+.+++.+..+... ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 84 ~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 84 KRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 111 1 123344444444332 469999999999999999999999999864
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.86 E-value=4.3e-22 Score=170.57 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=96.0
Q ss_pred ccccccCCCCCCceEEEEE--eCCee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcC--
Q psy6829 161 VDLSLYGSKTIQNTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANK-- 234 (369)
Q Consensus 161 i~td~s~~~~~~~~G~a~~--~~~~~--~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~-- 234 (369)
||||||+..+++..|+|++ ..+.. .+..+ ..+|++.||+.|+..||+.+.+ ..++.|+|||+++++.|.++
T Consensus 7 iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w~~ 83 (155)
T 1jl1_A 7 IFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIH 83 (155)
T ss_dssp EEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTTHH
T ss_pred EEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHHHHH
Confidence 8999999987777888877 33322 23333 3679999999999999999976 38999999999999999973
Q ss_pred ------C-CCc--HH-HHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCCCCC
Q psy6829 235 ------N-TSI--PL-IAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFV 288 (369)
Q Consensus 235 ------~-~~~--~~-~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~~~~ 288 (369)
. ..+ ++ ...+++.+..+.. ...|.|.|||||+|++|||.||+|||+|+..+.+
T Consensus 84 ~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 84 NWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 1 111 11 2345555555544 4689999999999999999999999999988764
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.86 E-value=6.4e-22 Score=170.00 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=94.3
Q ss_pred ccccccCCCCCCceEEEEE--eCCee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhc---
Q psy6829 161 VDLSLYGSKTIQNTSCAVY--AGGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN--- 233 (369)
Q Consensus 161 i~td~s~~~~~~~~G~a~~--~~~~~--~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~--- 233 (369)
||||||+..+++..|+|++ .++.. .+..++ .+|++.||+.|+..||+.+.+ ..++.|+|||++|++.|.+
T Consensus 9 iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~w~~ 85 (158)
T 2e4l_A 9 IFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMTWIH 85 (158)
T ss_dssp EEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHTHHH
T ss_pred EEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHHHHH
Confidence 8999999987777888877 34332 223333 579999999999999999865 3899999999999999988
Q ss_pred -----CCC-Cc--H-HHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCC-CC
Q psy6829 234 -----KNT-SI--P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA-EF 287 (369)
Q Consensus 234 -----~~~-~~--~-~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~-~~ 287 (369)
... .+ + ....+++.+..+.. ...|.|.|||||+|++|||.||+|||+|+.. +.
T Consensus 86 ~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~~ 148 (158)
T 2e4l_A 86 GWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEANPT 148 (158)
T ss_dssp HHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHhchh
Confidence 221 11 1 12344444555544 4689999999999999999999999999987 44
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.86 E-value=9.5e-22 Score=169.70 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=91.5
Q ss_pred cccccccCCCCCCceEEEEE--eCCee-EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCCC
Q psy6829 160 VVDLSLYGSKTIQNTSCAVY--AGGSA-KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNT 236 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~--~~~~~-~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~~ 236 (369)
.||||||+..++|..|+|++ .++.. ....+...+||+.||+.|+..||+.+ . ..++.|+|||+++++++-....
T Consensus 25 ~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~vi~~iw~~~~ 101 (165)
T 3p1g_A 25 TWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E--GKKLNVYTDSRYAFATAHVHSE 101 (165)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B--TSEEEEEECCHHHHHHHHSCCC
T ss_pred EEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c--CceEEEEEchHHHHhhhhcccC
Confidence 39999999876666666654 44332 23345668899999999999999999 2 6899999999999999932111
Q ss_pred CcHH-HHHHHHHH-HHHhhCCCeEEEEEecCCCC-----CccchHHhHHHhhhhCCCC
Q psy6829 237 SIPL-IAHILNTW-HTLKSCGKKVAFLWCPSHTG-----ISGNEIVDRATRQLDGAEF 287 (369)
Q Consensus 237 ~~~~-~~~i~~~~-~~l~~~~~~v~~~WvpgH~g-----i~gNe~AD~lAk~a~~~~~ 287 (369)
..++ ..+++..+ ..+ ..+..|.|.|||||+| ++|||.||+|||+|+..+.
T Consensus 102 g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 102 GREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp SCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 1111 12333222 334 3578999999999999 9999999999999998754
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.85 E-value=3.4e-22 Score=169.66 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=93.8
Q ss_pred cccccccCCCCCCceEEEEE--eCCee--EEE-ec--CC--CCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHH
Q psy6829 160 VVDLSLYGSKTIQNTSCAVY--AGGSA--KSY-IL--NN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTS 230 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~--~~~~~--~~~-~l--~~--~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~ 230 (369)
.||||||+.. +.+|+|++ .++.. .+. .. +. .+||+.||+.|+..||+.+.+.+. +|.|+|||+.+.+.
T Consensus 8 ~iytDGs~~~--g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w 84 (147)
T 2kq2_A 8 DVYTDGSYVN--GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFW 84 (147)
T ss_dssp EEECCCCCBT--TBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHH
T ss_pred EEEECCCCCC--CCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHH
Confidence 3999999987 55566655 44432 233 22 22 369999999999999999877656 99999999998888
Q ss_pred hhcCCCC-cHHHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCCCCC
Q psy6829 231 IANKNTS-IPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFV 288 (369)
Q Consensus 231 l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~~~~ 288 (369)
+.+.+.. .+....+.+.++++.. .|.|.|||||+|++|||.||+|||+|+..+.+
T Consensus 85 ~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 85 ATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp TTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 8775544 3444555555555533 79999999999999999999999999988654
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.85 E-value=1e-21 Score=170.04 Aligned_cols=124 Identities=18% Similarity=0.069 Sum_probs=94.9
Q ss_pred cccccccCCCCCCceEEEEEe--CCee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhc--
Q psy6829 160 VVDLSLYGSKTIQNTSCAVYA--GGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN-- 233 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~~--~~~~--~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~-- 233 (369)
.||||||+..+++..|+|++. ++.. .+... ..+|++.||+.|++.||+.+.+. .+|.|+|||+++++.|.+
T Consensus 10 ~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w 86 (166)
T 1ril_A 10 ALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGW 86 (166)
T ss_dssp CEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSH
T ss_pred EEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhH
Confidence 499999999887888888873 3322 22222 36799999999999999998763 589999999999999998
Q ss_pred --------CCCCc--H-HHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCCCC
Q psy6829 234 --------KNTSI--P-LIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEF 287 (369)
Q Consensus 234 --------~~~~~--~-~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~~~ 287 (369)
+...+ + ...++++.+..+.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 87 ~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 87 LEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 22211 1 12345555555544 358999999999999999999999999998864
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.82 E-value=2.5e-20 Score=160.60 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=90.3
Q ss_pred cccccccCCCCCCc-----eEEEEEe--CC----eeEEEec-CCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHH
Q psy6829 160 VVDLSLYGSKTIQN-----TSCAVYA--GG----SAKSYIL-NNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSA 227 (369)
Q Consensus 160 ~i~td~s~~~~~~~-----~G~a~~~--~~----~~~~~~l-~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~a 227 (369)
.||||||+..++|+ .|+|++. ++ ....+.. ....+++.||+.|+..||+.+.+. ..+|.|+|||++|
T Consensus 9 viYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TDS~Yv 87 (165)
T 2lsn_A 9 VFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITDSFYV 87 (165)
T ss_dssp EEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEESCHHH
T ss_pred EEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeChHHH
Confidence 38999999987665 7888872 22 1233333 346788999999999999988765 4579999999999
Q ss_pred HHHhhcCC---------CC--cHH-HHHHHHHHHHHhhCCCeEEEEEecCCCCC------ccchHHhHHHhhhhC
Q psy6829 228 LTSIANKN---------TS--IPL-IAHILNTWHTLKSCGKKVAFLWCPSHTGI------SGNEIVDRATRQLDG 284 (369)
Q Consensus 228 l~~l~~~~---------~~--~~~-~~~i~~~~~~l~~~~~~v~~~WvpgH~gi------~gNe~AD~lAk~a~~ 284 (369)
+++|..+. .. .++ -.++++.+.++......|.|.|||||+|+ +|||.||+||++|+.
T Consensus 88 i~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 88 AESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 99997531 11 111 23444444444444568999999999995 589999999999874
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.80 E-value=4.4e-19 Score=148.85 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=97.8
Q ss_pred cccccccCCCCCCceEEEEE--eCC---ee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhh
Q psy6829 160 VVDLSLYGSKTIQNTSCAVY--AGG---SA--KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIA 232 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~--~~~---~~--~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~ 232 (369)
.|||||++..+++..|+|++ +.+ .. .+..++ .+|++.||+.|++.||+.+.+.+..++.|+|||+++++.+.
T Consensus 5 ~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~ 83 (141)
T 3hst_B 5 VIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMS 83 (141)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHT
T ss_pred EEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHh
Confidence 38999999888777888877 322 22 223333 78999999999999999998877899999999999999999
Q ss_pred cCC-CCcHHHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCC
Q psy6829 233 NKN-TSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 285 (369)
Q Consensus 233 ~~~-~~~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~ 285 (369)
+.+ ..++....+++.+..+..++..|.|.|||+ ++||.||+|||+|+..
T Consensus 84 ~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 84 GRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp TSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 854 344555566667777777788999999995 8999999999998865
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.79 E-value=3e-19 Score=149.37 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=93.4
Q ss_pred ccccccCCCCCCceEEEEE--e--CCee--EEEecCCCCchHHHHHHHHHHHHHHhhcCCCC----cEEEEeCcHHHHHH
Q psy6829 161 VDLSLYGSKTIQNTSCAVY--A--GGSA--KSYILNNINSIFTAELLALVFCLDSVKNRPDV----NTLIVCDSMSALTS 230 (369)
Q Consensus 161 i~td~s~~~~~~~~G~a~~--~--~~~~--~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~----~i~I~tDS~~al~~ 230 (369)
||||||+..+++..|+|++ + ++.. .+..++ .+|++.||+.|+..||+.+.+.+.+ ++.|+|||+++++.
T Consensus 6 iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~ 84 (140)
T 3u3g_D 6 IYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQ 84 (140)
T ss_dssp EEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHH
T ss_pred EEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHH
Confidence 8999999988888888887 2 2222 222333 5799999999999999999887666 99999999999999
Q ss_pred hhcCCC-CcHHHHHHHHHHHHH-hhCCCeEEEEEecCCCCCccchHHhHHHhhhhCC
Q psy6829 231 IANKNT-SIPLIAHILNTWHTL-KSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 285 (369)
Q Consensus 231 l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~ 285 (369)
+.++.. .++....+++.+..+ ..+...|.|.|||+ ++||.||+|||+|+..
T Consensus 85 i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 85 MQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp HTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred hCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 998664 333334455555555 55566899999994 8999999999998753
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.75 E-value=2.3e-18 Score=175.98 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=89.8
Q ss_pred ccccccCCCCCCceEEEEE--eCCeeEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCCCC-
Q psy6829 161 VDLSLYGSKTIQNTSCAVY--AGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTS- 237 (369)
Q Consensus 161 i~td~s~~~~~~~~G~a~~--~~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~~~- 237 (369)
||||||+..+++..|+|++ .++ .....++ .+||+.||+.|+..||+. ...++.|+|||++|++++.++...
T Consensus 439 iytDGs~~~n~g~~g~G~v~~~~~-~~~~~~~-~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~~~ 512 (555)
T 1mu2_A 439 FYTDGSCNRQSKEGKAGYVTDRGK-DKVKKLE-QTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTES 512 (555)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSC-EEEEEES-SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCSEE
T ss_pred EEEcccccCCCCCceEEEEEEeCC-EeeccCC-CCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcccccc
Confidence 8999999887776777777 333 2233333 689999999999999998 468999999999999999987643
Q ss_pred -cHHHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhh
Q psy6829 238 -IPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLD 283 (369)
Q Consensus 238 -~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~ 283 (369)
.++.+++.+ .+ ..+..|.|.|||||+|++|||.||+|||+|+
T Consensus 513 ~~~l~~~~~~---~~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 513 ESKIVNQIIE---EM-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp SCHHHHHHHH---HH-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cHHHHHHHHH---Hh-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 345554443 22 2367899999999999999999999999885
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.75 E-value=4e-18 Score=144.67 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=91.9
Q ss_pred ccccccCC-CCCCceEE-EEE--eC-CeeEEE--ecC---CCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHH
Q psy6829 161 VDLSLYGS-KTIQNTSC-AVY--AG-GSAKSY--ILN---NINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTS 230 (369)
Q Consensus 161 i~td~s~~-~~~~~~G~-a~~--~~-~~~~~~--~l~---~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~ 230 (369)
|||||++. .+++..|+ |++ ++ .....+ .++ ..+|++.||+.|+..||+.+.+.+..++.|+|||+++++.
T Consensus 4 iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~ 83 (149)
T 2ehg_A 4 GYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQ 83 (149)
T ss_dssp EEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHH
T ss_pred EEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHH
Confidence 89999998 67777775 765 32 222222 233 3789999999999999999988778899999999999999
Q ss_pred hhcCCCC-cHHHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCC
Q psy6829 231 IANKNTS-IPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGA 285 (369)
Q Consensus 231 l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~ 285 (369)
+.++... ++....+++.+..+..+. .|.|.|||+ ++|+.||+|||+|+..
T Consensus 84 i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 84 MNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 9997542 333445555555554444 599999998 5999999999999865
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.74 E-value=2e-18 Score=176.62 Aligned_cols=113 Identities=26% Similarity=0.323 Sum_probs=87.8
Q ss_pred ccccccCCCCCCceEEEEEe-CCeeEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCCCC--
Q psy6829 161 VDLSLYGSKTIQNTSCAVYA-GGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTS-- 237 (369)
Q Consensus 161 i~td~s~~~~~~~~G~a~~~-~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~~~-- 237 (369)
||||||+..++|..|+|++. .+....... ..+||+.||+.|+..||+.+ ..++.|+|||++|++.+.++...
T Consensus 442 iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~~~~ 516 (557)
T 2zd1_A 442 FYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPDKSE 516 (557)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCSEES
T ss_pred EEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCccCC
Confidence 89999998877777777773 222233333 36899999999999999998 57899999999999999998654
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhh
Q psy6829 238 IPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQL 282 (369)
Q Consensus 238 ~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a 282 (369)
.++.+++.+ .+.. ...|.|.|||||+|++|||.||+||++|
T Consensus 517 ~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 517 SELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp SHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 245555543 3333 4589999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.31 E-value=6.7e-13 Score=111.21 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=83.1
Q ss_pred cccccccCCCCCCceEEEEEeC--CeeE--EEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCC
Q psy6829 160 VVDLSLYGSKTIQNTSCAVYAG--GSAK--SYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN 235 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~~~--~~~~--~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~ 235 (369)
.|||||++..++|..|+|++.. +... +..++ .+||+.||+.|++.||+.+.+.+. ++.|+|||++|++.+++..
T Consensus 13 ~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~ 90 (142)
T 1zbf_A 13 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKK 90 (142)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTC
T ss_pred EEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCC
Confidence 4999999999889899999842 2222 12233 579999999999999999988655 9999999999999999876
Q ss_pred CC-c--------HHHHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhH
Q psy6829 236 TS-I--------PLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDR 277 (369)
Q Consensus 236 ~~-~--------~~~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~ 277 (369)
.. + ++.+.+.....-+.. ..+....|.-|++.-||..||.
T Consensus 91 ~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 91 AKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp CCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 21 1 244444433333433 3455556677888889999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.14 E-value=1.3e-10 Score=95.70 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=58.3
Q ss_pred cccccccCCCCCCceEEEEE--e-CCee-EEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCC
Q psy6829 160 VVDLSLYGSKTIQNTSCAVY--A-GGSA-KSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKN 235 (369)
Q Consensus 160 ~i~td~s~~~~~~~~G~a~~--~-~~~~-~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~ 235 (369)
.|||||++..++|..|+|++ . +... ....++ .+||+.||+.|++.||+.+.+.+. ++.|+|||++|++.|.++.
T Consensus 7 ~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~-~v~i~tDSqyVi~wi~~~~ 84 (134)
T 4htu_A 7 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKK 84 (134)
T ss_dssp SEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTC
T ss_pred EEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCC-CEEEEcchHHHHHHHHcCC
Confidence 49999999999998999544 2 2222 223333 789999999999999999987543 3899999999999998753
No 17
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=40.52 E-value=38 Score=26.81 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=33.3
Q ss_pred CCceEEEEE--eCCeeEEEecCCCCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCc
Q psy6829 171 IQNTSCAVY--AGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 224 (369)
Q Consensus 171 ~~~~G~a~~--~~~~~~~~~l~~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS 224 (369)
+-.||++++ +|+..............-||..||..|... -......+.+++|.
T Consensus 26 ~f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 26 DYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 457899988 333333333332333456999999999975 22345677888874
No 18
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=39.69 E-value=42 Score=28.17 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCceEEEEEeCCeeEEEecC----CCCchHHHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy6829 171 IQNTSCAVYAGGSAKSYILN----NINSIFTAELLALVFCLDSVKNRPDVNTLIVC 222 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~----~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~t 222 (369)
+..+|+.++.++...+.+.. .....-.||..||..|.+...........+|+
T Consensus 35 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 56789999965544332211 11123459999999998875444455667776
No 19
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.40 E-value=49 Score=23.89 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEecCCCCCccchHHhHHHhhhhCCCCCCCCChHHHHHHHHHHH
Q psy6829 241 IAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQLDGAEFVNLSSPADLISVGKKYI 304 (369)
Q Consensus 241 ~~~i~~~~~~l~~~~~~v~~~WvpgH~gi~gNe~AD~lAk~a~~~~~~~~~~~~~~~~~~k~~~ 304 (369)
.++|.+.+..+...|..+. .+|-|-+...-||.-.++-|++..-..+....+..+...+++.+
T Consensus 37 sqdirdiiksmkdngkplv-vfvngasqndvnefqneakkegvsydvlkstdpeeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLV-VFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEE-EEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEE-EEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHH
Confidence 5777777788877776654 47888887788888888888777654444555556655555544
No 20
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=36.67 E-value=50 Score=27.23 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=31.9
Q ss_pred CCceEEEEEeCCeeEEEecCC----CCchHHHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy6829 171 IQNTSCAVYAGGSAKSYILNN----INSIFTAELLALVFCLDSVKNRPDVNTLIVC 222 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~~----~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~t 222 (369)
+..+|+.++.++...+.+... ..-.--||..||..|.+...........+|+
T Consensus 31 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 31 GGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 456899988655443322111 1123459999999998865443455667776
No 21
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=34.76 E-value=11 Score=36.40 Aligned_cols=42 Identities=5% Similarity=-0.137 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHHHHHhhcC-CCCcEEEEeCcHHHHHHhhcC
Q psy6829 192 INSIFTAELLALVFCLDSVKNR-PDVNTLIVCDSMSALTSIANK 234 (369)
Q Consensus 192 ~~t~~~AEl~Ai~~aL~~~~~~-~~~~i~I~tDS~~al~~l~~~ 234 (369)
.-++++.|+.||..|++..... .+..+.|+||+. ++..+.+.
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 4567889999999999887653 467999999996 66666554
No 22
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=34.50 E-value=57 Score=26.39 Aligned_cols=53 Identities=15% Similarity=0.003 Sum_probs=34.2
Q ss_pred CCceEEEEE--eCCeeEEEecCC--CCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCc
Q psy6829 171 IQNTSCAVY--AGGSAKSYILNN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 224 (369)
Q Consensus 171 ~~~~G~a~~--~~~~~~~~~l~~--~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS 224 (369)
+..+|++++ +|+......... .....-||..||..|... -......+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 567999998 344443333321 112345999999999975 23346788999885
No 23
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=34.23 E-value=79 Score=25.76 Aligned_cols=52 Identities=8% Similarity=-0.085 Sum_probs=32.3
Q ss_pred CCceEEEEEeCCeeEEEecCC----CCchHHHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy6829 171 IQNTSCAVYAGGSAKSYILNN----INSIFTAELLALVFCLDSVKNRPDVNTLIVC 222 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~~----~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~t 222 (369)
+..+|+.++.++...+.+... ..-.-.||..||..|.+...........+|+
T Consensus 26 ~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 567899988654443322111 1223459999999998865444456677776
No 24
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=33.42 E-value=54 Score=26.21 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=30.7
Q ss_pred CCceEEEEEeCCeeEEEecCC----CCchHHHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy6829 171 IQNTSCAVYAGGSAKSYILNN----INSIFTAELLALVFCLDSVKNRPDVNTLIVC 222 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~~----~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~t 222 (369)
+..+|+.++.++...+.+... ......||..||..|.+...........+|+
T Consensus 23 ~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 557899998654443322111 1113459999999998765433344556665
No 25
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=33.26 E-value=62 Score=26.88 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=31.9
Q ss_pred CCceEEEEEeCCeeEEEecCC----CCchHHHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy6829 171 IQNTSCAVYAGGSAKSYILNN----INSIFTAELLALVFCLDSVKNRPDVNTLIVC 222 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~~----~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~t 222 (369)
+..+|+.++.++...+.+... ....--||..||..|.+...........+|+
T Consensus 42 ~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 42 EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 557899988654443322111 1113459999999998865443456677776
No 26
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=28.21 E-value=75 Score=26.21 Aligned_cols=52 Identities=12% Similarity=-0.018 Sum_probs=30.6
Q ss_pred CCceEEEEEeCCeeEEEecC----CCCchHHHHHHHHHHHHHHhhcCCCCcEEEEe
Q psy6829 171 IQNTSCAVYAGGSAKSYILN----NINSIFTAELLALVFCLDSVKNRPDVNTLIVC 222 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~----~~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~t 222 (369)
+..+|+.++.++...+.+.. .....-.||..||..|.+...........+|+
T Consensus 28 ~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 28 EVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred CCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 44689999965544332211 11123459999999998875443344555655
No 27
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=26.82 E-value=97 Score=24.58 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=34.0
Q ss_pred CCceEEEEEe--CCeeEEEecCC--CCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCc
Q psy6829 171 IQNTSCAVYA--GGSAKSYILNN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 224 (369)
Q Consensus 171 ~~~~G~a~~~--~~~~~~~~l~~--~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS 224 (369)
+-.+|++++. |+......... ..-..-||..||..|... -......+.|++|.
T Consensus 23 ~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 23 KFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 4478999884 44443333321 222355999999999976 33446788888875
No 28
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=24.41 E-value=37 Score=33.95 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEE--eCcHHHHHHhhcC-CCC------c---HHHHHHHHHHHHHhhCCCeEEEEEecCC
Q psy6829 199 ELLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANK-NTS------I---PLIAHILNTWHTLKSCGKKVAFLWCPSH 266 (369)
Q Consensus 199 El~Ai~~aL~~~~~~~~~~i~I~--tDS~~al~~l~~~-~~~------~---~~~~~i~~~~~~l~~~~~~v~~~WvpgH 266 (369)
-+.+|..-|.++.+.+...|.+. .++. .++ +.. . +...++.+.++++.+.|..|-+-||+.|
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~------~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 243 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKAT------TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNH 243 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCS------SSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSB
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCC------CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccc
Confidence 36788888999988777776654 2221 111 111 1 2457788888999999999999999999
Q ss_pred CCCccc
Q psy6829 267 TGISGN 272 (369)
Q Consensus 267 ~gi~gN 272 (369)
++....
T Consensus 244 ~~~~~~ 249 (583)
T 1ea9_C 244 SGRTFP 249 (583)
T ss_dssp CCTTTH
T ss_pred CCCccH
Confidence 986543
No 29
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=22.07 E-value=1.1e+02 Score=25.72 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCceEEEEEeCCeeEEEecCC----CCchHHHHHHHHHHHHHHh
Q psy6829 171 IQNTSCAVYAGGSAKSYILNN----INSIFTAELLALVFCLDSV 210 (369)
Q Consensus 171 ~~~~G~a~~~~~~~~~~~l~~----~~t~~~AEl~Ai~~aL~~~ 210 (369)
+..+|+.++.++...+.+... ..-.-.||..||..|.+.+
T Consensus 45 ~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 45 EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 (189)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHH
Confidence 457899988655544333211 2234459999999998764
No 30
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=20.85 E-value=46 Score=33.26 Aligned_cols=74 Identities=15% Similarity=0.048 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEE--eCcHHHHHHhhcCCCCc---------HHHHHHHHHHHHHhhCCCeEEEEEecCCC
Q psy6829 199 ELLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANKNTSI---------PLIAHILNTWHTLKSCGKKVAFLWCPSHT 267 (369)
Q Consensus 199 El~Ai~~aL~~~~~~~~~~i~I~--tDS~~al~~l~~~~~~~---------~~~~~i~~~~~~l~~~~~~v~~~WvpgH~ 267 (369)
-+.+|..-|.++.+.+...|.+. .++.+ ...+... +...++.+.++++.+.|..|-+-||+.|+
T Consensus 174 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 248 (588)
T 1j0h_A 174 DLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcC
Confidence 37788888999988777666543 12211 1112111 23577888888999999999999999999
Q ss_pred CCccchHHhH
Q psy6829 268 GISGNEIVDR 277 (369)
Q Consensus 268 gi~gNe~AD~ 277 (369)
+.....-.|.
T Consensus 249 ~~~~~~f~~~ 258 (588)
T 1j0h_A 249 GYEFAPFQDV 258 (588)
T ss_dssp CTTCHHHHHH
T ss_pred cccchhHHHH
Confidence 9765444343
No 31
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=20.85 E-value=1.3e+02 Score=23.99 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=40.7
Q ss_pred CCceEEEEEe--CCeeEEEecCC--CCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCcHHHHHHhhcCCCCcHHHHHHH
Q psy6829 171 IQNTSCAVYA--GGSAKSYILNN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIANKNTSIPLIAHIL 245 (369)
Q Consensus 171 ~~~~G~a~~~--~~~~~~~~l~~--~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS~~al~~l~~~~~~~~~~~~i~ 245 (369)
+-.||++++. |.......... +....-||..||..|...- ......|.|.+|.. .+..+-+.-++..
T Consensus 32 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~-------~~~~PCG~CRQ~l 102 (141)
T 2d30_A 32 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK-------RPVPPCGACRQVM 102 (141)
T ss_dssp CCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS-------SCCCCCHHHHHHH
T ss_pred CCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC-------CccCcCHHHHHHH
Confidence 3468888883 43333333321 2223559999999998753 23467788998863 2334556666655
No 32
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=20.57 E-value=47 Score=33.16 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCCCcEEEE--eCcHHHHHHhhcC-CCC---------cHHHHHHHHHHHHHhhCCCeEEEEEecCCC
Q psy6829 200 LLALVFCLDSVKNRPDVNTLIV--CDSMSALTSIANK-NTS---------IPLIAHILNTWHTLKSCGKKVAFLWCPSHT 267 (369)
Q Consensus 200 l~Ai~~aL~~~~~~~~~~i~I~--tDS~~al~~l~~~-~~~---------~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~ 267 (369)
+.+|..-|.++.+.+...|.+. .++. .++ +.. -+...++.+.++++.+.|..|-+-||+.|+
T Consensus 172 ~~gi~~~LdyLk~LGvt~I~L~Pi~~~~------~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 172 LKGVIDRLPYLEELGVTALYFTPIFASP------SHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECS------SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred HHHHHHHhHHHHHcCCCEEEECCcccCC------CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 6778888999988776666543 1221 122 211 124577888889999999999999999999
Q ss_pred CCccc
Q psy6829 268 GISGN 272 (369)
Q Consensus 268 gi~gN 272 (369)
+....
T Consensus 246 ~~~~~ 250 (585)
T 1wzl_A 246 GDQFF 250 (585)
T ss_dssp CTTSH
T ss_pred CCccH
Confidence 97544
No 33
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=20.16 E-value=2e+02 Score=22.88 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=33.9
Q ss_pred CCceEEEEEe--CCeeEEEecCC--CCchHHHHHHHHHHHHHHhhcCCCCcEEEEeCc
Q psy6829 171 IQNTSCAVYA--GGSAKSYILNN--INSIFTAELLALVFCLDSVKNRPDVNTLIVCDS 224 (369)
Q Consensus 171 ~~~~G~a~~~--~~~~~~~~l~~--~~t~~~AEl~Ai~~aL~~~~~~~~~~i~I~tDS 224 (369)
+-.+|+++.. |.......... .....-||..||..|...-.......+.|++|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 4578888883 43333333321 222355999999999875332226788999886
Done!