RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6829
         (369 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 33.3 bits (75), Expect = 0.014
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 246 NTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQ 281
           N         + +   W P+H GI GN+ VD    Q
Sbjct: 89  NQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ 124


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 31.5 bits (70), Expect = 0.067
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 178 VYAGGSAKSYILNNINSIFTAELLALVFCLDSVKNRPDVNTLIVCDSMSALTSIAN---- 233
            +              +    EL A +  L ++K   +V+  +  DS     +       
Sbjct: 26  RFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVD--LYTDSHYLKKAFTEGWLE 83

Query: 234 --------KNTSIPLIAHILNTWHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQ 281
                        P+    L     L     +V F +   HTG   NE VDR  R+
Sbjct: 84  GWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 139


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 31.5 bits (70), Expect = 0.070
 Identities = 7/34 (20%), Positives = 10/34 (29%)

Query: 248 WHTLKSCGKKVAFLWCPSHTGISGNEIVDRATRQ 281
                    ++ + W   H G   NE  D   R 
Sbjct: 104 RLDAALGQHQIKWEWVKGHAGHPENERADELARA 137


>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 122

 Score = 25.6 bits (55), Expect = 5.9
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 295 DLISVGKKYIHEKWQKSWSDLTNNKLKCVK 324
           +  S  KK  +  W K +      ++   K
Sbjct: 19  EWDSTTKKASNRSWDKVYMAAKAGRISFYK 48


>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 336

 Score = 25.9 bits (57), Expect = 8.3
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 54  HNGIRIATGALRSSPVQSLYAESNIPPLSVRRDKLLFNYVVKLY-GCPLNPMHKILFGNV 112
           +  ++     L SS  + L++ S  P          F+                + F   
Sbjct: 221 NGELKAYGAGLLSSYGELLHSLSEEPE------VRAFDPDTAAVQPYQDQTYQPVYF-VS 273

Query: 113 DSFNITPNK--------PLPLKIRFNCIREVSAVLKNTKVV 145
           +SFN   +K          P  ++F+       VL +   +
Sbjct: 274 ESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTI 314


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,365,756
Number of extensions: 61568
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 8
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)