Query psy683
Match_columns 137
No_of_seqs 138 out of 518
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:32:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1777|consensus 99.9 3.7E-27 8.1E-32 188.9 5.2 132 2-134 354-485 (625)
2 KOG1777|consensus 99.9 4.1E-25 8.8E-30 177.3 3.2 133 2-134 308-440 (625)
3 PF13229 Beta_helix: Right han 99.7 2.4E-17 5.1E-22 115.5 10.6 125 7-133 10-137 (158)
4 PF13229 Beta_helix: Right han 99.7 8E-17 1.7E-21 112.8 11.4 124 5-130 31-158 (158)
5 PF05048 NosD: Periplasmic cop 99.6 1.8E-13 3.9E-18 103.4 14.3 119 8-130 46-165 (236)
6 TIGR03805 beta_helix_1 paralle 99.5 4.7E-13 1E-17 105.8 15.5 125 8-134 65-204 (314)
7 PF05048 NosD: Periplasmic cop 99.5 5.2E-13 1.1E-17 100.9 15.0 123 6-133 22-144 (236)
8 TIGR03805 beta_helix_1 paralle 99.5 8.4E-13 1.8E-17 104.3 14.6 110 7-118 117-250 (314)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.4 1.3E-11 2.8E-16 100.7 15.0 123 9-132 118-282 (455)
10 TIGR03808 RR_plus_rpt_1 twin-a 99.2 6.9E-10 1.5E-14 90.7 14.4 125 7-131 145-305 (455)
11 COG3420 NosD Nitrous oxidase a 98.9 4.1E-08 8.8E-13 77.7 11.2 122 8-132 79-214 (408)
12 PF07602 DUF1565: Protein of u 98.8 1.6E-07 3.5E-12 72.0 11.1 111 5-117 96-224 (246)
13 COG3420 NosD Nitrous oxidase a 98.6 2.5E-07 5.4E-12 73.3 9.6 120 6-129 107-233 (408)
14 PF07602 DUF1565: Protein of u 98.5 1.8E-06 3.9E-11 66.2 10.1 96 23-121 91-198 (246)
15 TIGR03804 para_beta_helix para 98.2 4.7E-06 1E-10 47.1 5.8 43 22-65 1-43 (44)
16 TIGR03804 para_beta_helix para 98.2 5.2E-06 1.1E-10 47.0 5.4 42 68-110 1-42 (44)
17 PF12708 Pectate_lyase_3: Pect 97.7 0.00092 2E-08 49.1 10.7 121 9-134 95-221 (225)
18 PF12708 Pectate_lyase_3: Pect 97.7 0.0023 5.1E-08 47.0 12.7 103 7-115 122-224 (225)
19 smart00722 CASH Domain present 97.3 0.0055 1.2E-07 41.7 10.0 51 75-127 76-132 (146)
20 smart00722 CASH Domain present 97.1 0.0057 1.2E-07 41.7 8.4 65 51-117 75-145 (146)
21 PLN02218 polygalacturonase ADP 97.1 0.03 6.6E-07 46.4 14.0 107 9-119 204-324 (431)
22 PLN03003 Probable polygalactur 96.9 0.052 1.1E-06 45.3 13.6 107 9-119 150-270 (456)
23 PLN02188 polygalacturonase/gly 96.8 0.079 1.7E-06 43.6 14.3 107 9-119 167-287 (404)
24 PF00295 Glyco_hydro_28: Glyco 96.8 0.039 8.4E-07 43.9 12.0 108 8-119 103-224 (326)
25 PLN02793 Probable polygalactur 96.8 0.16 3.4E-06 42.3 15.6 107 9-119 189-309 (443)
26 PF01696 Adeno_E1B_55K: Adenov 96.7 0.058 1.2E-06 44.0 12.5 115 8-131 123-238 (386)
27 PF14592 Chondroitinas_B: Chon 96.6 0.091 2E-06 43.5 13.1 126 7-134 132-284 (425)
28 PLN02218 polygalacturonase ADP 96.6 0.11 2.4E-06 43.1 13.4 109 22-133 194-316 (431)
29 PLN02155 polygalacturonase 96.5 0.14 3E-06 42.1 13.7 107 9-119 157-277 (394)
30 PF08480 Disaggr_assoc: Disagg 96.5 0.082 1.8E-06 39.0 10.8 104 9-112 5-145 (198)
31 PF14592 Chondroitinas_B: Chon 96.4 0.2 4.3E-06 41.5 13.8 113 4-119 197-330 (425)
32 PF08480 Disaggr_assoc: Disagg 96.3 0.032 7E-07 41.1 7.8 64 30-93 3-82 (198)
33 PLN03010 polygalacturonase 96.3 0.34 7.5E-06 40.0 14.5 108 8-119 168-289 (409)
34 smart00656 Amb_all Amb_all dom 96.2 0.087 1.9E-06 38.9 9.9 122 9-132 43-188 (190)
35 PLN02793 Probable polygalactur 96.0 0.37 8E-06 40.2 13.5 109 22-133 179-301 (443)
36 PLN03003 Probable polygalactur 95.9 0.37 8E-06 40.3 13.0 109 22-133 140-262 (456)
37 PLN02155 polygalacturonase 95.8 0.26 5.7E-06 40.4 11.6 109 22-133 147-269 (394)
38 PLN03010 polygalacturonase 95.7 0.55 1.2E-05 38.8 13.3 109 22-133 159-281 (409)
39 COG5434 PGU1 Endopygalactoruna 95.7 0.13 2.9E-06 43.7 9.9 107 9-119 250-377 (542)
40 PLN02480 Probable pectinestera 95.5 0.89 1.9E-05 36.7 13.6 53 53-110 166-218 (343)
41 PLN02188 polygalacturonase/gly 95.2 0.78 1.7E-05 37.8 12.7 109 22-133 157-279 (404)
42 PF00295 Glyco_hydro_28: Glyco 95.2 0.18 3.9E-06 40.1 8.8 109 22-133 94-216 (326)
43 PLN02480 Probable pectinestera 95.2 1.4 3E-05 35.6 14.1 83 45-132 125-217 (343)
44 PF01696 Adeno_E1B_55K: Adenov 95.0 0.56 1.2E-05 38.4 11.1 98 6-112 145-242 (386)
45 PF00544 Pec_lyase_C: Pectate 93.6 0.84 1.8E-05 33.9 8.7 110 18-129 73-199 (200)
46 PRK10531 acyl-CoA thioesterase 93.0 2.2 4.8E-05 35.4 10.9 93 22-118 230-344 (422)
47 smart00656 Amb_all Amb_all dom 92.6 3.1 6.8E-05 30.6 12.6 109 21-131 32-164 (190)
48 PLN02773 pectinesterase 92.5 3.9 8.5E-05 32.7 11.5 60 22-86 122-182 (317)
49 smart00710 PbH1 Parallel beta- 92.2 0.28 6E-06 23.1 3.1 18 31-48 4-21 (26)
50 PF12541 DUF3737: Protein of u 91.6 4.9 0.00011 31.4 10.7 34 103-136 175-209 (277)
51 COG5434 PGU1 Endopygalactoruna 91.6 1.8 4E-05 37.0 9.2 96 22-119 240-350 (542)
52 PRK09752 adhesin; Provisional 91.5 11 0.00025 35.2 14.4 120 5-125 95-253 (1250)
53 PLN02665 pectinesterase family 90.9 4.4 9.6E-05 33.1 10.4 53 29-86 187-239 (366)
54 PF01095 Pectinesterase: Pecti 90.8 6.9 0.00015 30.9 12.2 53 7-64 116-168 (298)
55 PLN02682 pectinesterase family 90.2 7.2 0.00016 31.9 11.0 17 47-63 232-248 (369)
56 PLN02671 pectinesterase 89.9 7.8 0.00017 31.6 11.0 54 28-86 185-238 (359)
57 PLN02708 Probable pectinestera 89.6 7.3 0.00016 33.5 11.1 51 30-85 359-409 (553)
58 PLN02665 pectinesterase family 88.4 12 0.00027 30.5 12.7 54 7-65 188-241 (366)
59 PRK10531 acyl-CoA thioesterase 88.4 14 0.00029 30.9 13.4 102 27-132 204-335 (422)
60 PLN02634 probable pectinestera 88.2 11 0.00024 30.8 10.7 7 101-107 226-232 (359)
61 PLN02916 pectinesterase family 87.7 6.8 0.00015 33.3 9.6 52 30-86 306-357 (502)
62 PF00544 Pec_lyase_C: Pectate 87.6 9.5 0.0002 28.2 10.9 90 21-111 37-159 (200)
63 PLN02745 Putative pectinestera 87.1 5.6 0.00012 34.6 8.9 31 30-63 422-452 (596)
64 PRK09752 adhesin; Provisional 87.0 27 0.00059 32.9 14.1 104 30-134 97-235 (1250)
65 PLN02484 probable pectinestera 86.5 7 0.00015 33.9 9.1 17 47-63 424-440 (587)
66 PLN02773 pectinesterase 85.9 16 0.00035 29.2 13.7 100 28-133 101-212 (317)
67 PLN03043 Probable pectinestera 85.8 11 0.00025 32.3 10.0 60 22-86 333-393 (538)
68 PLN02201 probable pectinestera 85.7 20 0.00043 30.7 11.3 51 8-63 323-373 (520)
69 PLN02217 probable pectinestera 85.5 6.8 0.00015 34.5 8.6 60 22-86 357-417 (670)
70 PF01095 Pectinesterase: Pecti 85.4 16 0.00035 28.8 10.4 53 53-110 116-168 (298)
71 PLN02488 probable pectinestera 85.4 12 0.00026 31.9 9.8 60 22-86 304-364 (509)
72 PLN02432 putative pectinestera 85.1 13 0.00028 29.4 9.4 50 9-63 124-173 (293)
73 PLN02995 Probable pectinestera 84.4 15 0.00033 31.5 10.2 60 22-86 332-392 (539)
74 PLN02634 probable pectinestera 84.3 21 0.00046 29.1 13.3 103 21-130 173-288 (359)
75 PLN02933 Probable pectinestera 84.1 21 0.00046 30.7 10.8 50 9-63 336-385 (530)
76 PLN02682 pectinesterase family 84.0 22 0.00048 29.1 13.4 31 76-109 218-248 (369)
77 PLN02314 pectinesterase 83.6 12 0.00026 32.5 9.2 31 30-63 415-445 (586)
78 PLN02698 Probable pectinestera 83.3 8.9 0.00019 32.6 8.3 17 47-63 334-350 (497)
79 PLN02990 Probable pectinestera 82.9 15 0.00032 31.9 9.5 59 22-85 367-426 (572)
80 PLN02995 Probable pectinestera 82.8 30 0.00065 29.8 12.0 51 8-63 342-392 (539)
81 PLN02176 putative pectinestera 82.2 25 0.00054 28.5 11.8 51 30-85 157-207 (340)
82 PLN02170 probable pectinestera 81.4 31 0.00067 29.6 10.8 17 47-63 377-393 (529)
83 PLN02506 putative pectinestera 81.2 25 0.00054 30.2 10.2 60 22-86 339-399 (537)
84 PLN02713 Probable pectinestera 81.0 31 0.00068 29.8 10.8 52 30-86 369-420 (566)
85 COG3866 PelB Pectate lyase [Ca 81.0 27 0.00059 28.1 9.6 74 21-95 117-205 (345)
86 PLN02304 probable pectinestera 80.9 30 0.00065 28.5 11.2 13 30-42 196-208 (379)
87 PLN02432 putative pectinestera 80.2 28 0.0006 27.6 11.2 53 29-86 121-173 (293)
88 PLN02301 pectinesterase/pectin 80.0 14 0.00031 31.8 8.4 52 30-86 352-403 (548)
89 PLN02671 pectinesterase 78.6 35 0.00076 27.9 12.6 75 53-132 187-269 (359)
90 PLN02304 probable pectinestera 78.3 31 0.00066 28.4 9.5 53 53-110 196-248 (379)
91 PLN02468 putative pectinestera 74.9 56 0.0012 28.3 10.7 30 31-63 396-425 (565)
92 PLN02497 probable pectinestera 74.4 44 0.00096 27.0 13.9 17 93-109 186-202 (331)
93 PLN02313 Pectinesterase/pectin 74.3 27 0.00058 30.4 8.6 60 22-86 382-442 (587)
94 PLN02497 probable pectinestera 70.9 54 0.0012 26.5 14.2 59 69-132 143-202 (331)
95 PLN02176 putative pectinestera 67.7 65 0.0014 26.1 14.2 52 53-109 157-208 (340)
96 COG4677 PemB Pectin methyleste 64.8 31 0.00067 28.1 6.5 11 100-110 256-266 (405)
97 PLN02197 pectinesterase 64.8 21 0.00045 31.1 5.9 59 22-85 384-443 (588)
98 PLN02314 pectinesterase 61.5 1.1E+02 0.0023 26.8 9.6 74 54-133 395-480 (586)
99 PLN02484 probable pectinestera 61.1 1E+02 0.0022 27.0 9.4 32 76-110 410-441 (587)
100 PF12541 DUF3737: Protein of u 60.1 74 0.0016 25.0 7.6 106 9-130 22-127 (277)
101 PLN02916 pectinesterase family 58.3 1.2E+02 0.0026 26.0 10.4 31 77-110 328-358 (502)
102 PLN02416 probable pectinestera 54.7 35 0.00075 29.4 5.6 17 47-63 381-397 (541)
103 PRK09718 hypothetical protein; 54.6 28 0.0006 29.7 4.8 19 77-95 145-163 (512)
104 PF03718 Glyco_hydro_49: Glyco 54.4 1.5E+02 0.0032 25.8 10.2 100 7-110 330-441 (582)
105 PLN03043 Probable pectinestera 53.0 1.5E+02 0.0033 25.6 14.2 30 77-109 364-393 (538)
106 PRK09718 hypothetical protein; 53.0 40 0.00086 28.8 5.5 60 55-117 146-207 (512)
107 PLN02933 Probable pectinestera 52.1 1.6E+02 0.0034 25.5 9.6 75 53-132 334-419 (530)
108 PLN02468 putative pectinestera 50.9 1.7E+02 0.0036 25.5 9.2 76 53-133 374-460 (565)
109 PLN02301 pectinesterase/pectin 50.5 1.7E+02 0.0037 25.4 9.6 31 77-110 374-404 (548)
110 COG4677 PemB Pectin methyleste 50.4 63 0.0014 26.4 6.0 17 47-63 269-285 (405)
111 PLN02217 probable pectinestera 48.6 2E+02 0.0043 25.7 13.6 76 53-133 366-452 (670)
112 PLN02990 Probable pectinestera 47.1 1.9E+02 0.0042 25.1 9.3 76 53-133 376-462 (572)
113 PLN02708 Probable pectinestera 46.6 1.9E+02 0.0042 25.0 14.0 99 30-133 331-449 (553)
114 PLN02698 Probable pectinestera 44.9 2E+02 0.0043 24.6 9.4 99 30-133 271-385 (497)
115 PLN02506 putative pectinestera 44.0 2.1E+02 0.0046 24.7 13.3 31 77-110 370-400 (537)
116 PLN02745 Putative pectinestera 39.9 2.6E+02 0.0056 24.5 14.0 76 53-133 401-487 (596)
117 PLN02488 probable pectinestera 37.9 2.6E+02 0.0057 24.0 13.8 31 77-110 335-365 (509)
118 COG3866 PelB Pectate lyase [Ca 36.5 2.3E+02 0.005 22.9 10.3 22 90-111 254-277 (345)
119 PLN02197 pectinesterase 36.3 3E+02 0.0064 24.1 13.5 51 54-109 394-444 (588)
120 PLN02713 Probable pectinestera 32.8 3.3E+02 0.0072 23.7 14.5 31 77-110 391-421 (566)
121 PLN02201 probable pectinestera 32.6 3.3E+02 0.0071 23.5 14.6 75 53-132 322-407 (520)
122 TIGR03807 RR_fam_repeat putati 30.6 57 0.0012 16.4 2.0 18 21-40 8-25 (27)
123 PLN02170 probable pectinestera 29.2 3.8E+02 0.0082 23.2 13.4 53 77-132 364-426 (529)
124 PF01690 PLRV_ORF5: Potato lea 28.3 58 0.0013 27.5 2.7 50 86-135 121-176 (465)
125 PLN02416 probable pectinestera 28.3 4E+02 0.0086 23.1 13.5 31 77-110 368-398 (541)
126 KOG2675|consensus 28.1 3.8E+02 0.0081 22.8 8.2 69 37-117 376-444 (480)
127 PLN02313 Pectinesterase/pectin 20.5 5.9E+02 0.013 22.3 13.3 52 54-110 392-443 (587)
No 1
>KOG1777|consensus
Probab=99.93 E-value=3.7e-27 Score=188.92 Aligned_cols=132 Identities=40% Similarity=0.658 Sum_probs=128.4
Q ss_pred ceecceEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEe
Q psy683 2 ARQKGKAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRR 81 (137)
Q Consensus 2 ~~~~g~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~ 81 (137)
+|++|+|.|+.++++++..+||++..++.|.|+.|+|+...+.|||+++.+.+++|+|+|..+..+||.++.+|+|.+++
T Consensus 354 vHr~gkGLieenkvy~n~lagi~vtTGstP~lR~n~ihSGkq~GVyFydng~glle~ndi~~~~ysgvqirtGsNP~i~~ 433 (625)
T KOG1777|consen 354 VHRKGKGLIEENKVYGNTLAGIWVTTGSTPDLRANRIHSGKQVGVYFYDNGHGLLEQNDIRNHKYSGVQIRTGSNPKIRR 433 (625)
T ss_pred EehhcccceecchHhhhhhheeEecCCCCHhHhhhcccccceeEEEEEeCCcchhhhhhhhhccccceEeecCCCCeeee
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEecCc
Q psy683 82 NRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRRSM 134 (137)
Q Consensus 82 n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~~~ 134 (137)
|+|+.++ .||+|..++.|.||+|+|++|+.+|||+++.++|+||+|+|+++.
T Consensus 434 NkIWggq-NGvLVyn~G~Gc~E~NeIFDNaMagVwIKTds~PtlrRNKI~dgR 485 (625)
T KOG1777|consen 434 NKIWGGQ-NGVLVYNGGLGCLEDNEIFDNAMAGVWIKTDSNPTLRRNKIYDGR 485 (625)
T ss_pred cceecCc-ccEEEEcCcccccccccchhhhhcceEEecCCCcceeecceecCC
Confidence 9999996 689999999999999999999999999999999999999999874
No 2
>KOG1777|consensus
Probab=99.90 E-value=4.1e-25 Score=177.27 Aligned_cols=133 Identities=62% Similarity=0.955 Sum_probs=130.1
Q ss_pred ceecceEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEe
Q psy683 2 ARQKGKAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRR 81 (137)
Q Consensus 2 ~~~~g~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~ 81 (137)
+.+.++|+|+.++|+++...||.++..+.|.++.|+|++....||+++..+++++|.|++|+|..+|+++..++.|.||.
T Consensus 308 I~~~~rG~fe~n~i~~n~llgIqIr~~s~PIVr~nkI~Dg~hggi~vHr~gkGLieenkvy~n~lagi~vtTGstP~lR~ 387 (625)
T KOG1777|consen 308 IFGDGRGLFEFNEIYGNALLGIQIRTNSTPIVRYNKIHDGAHGGIYVHRKGKGLIEENKVYGNTLAGIWVTTGSTPDLRA 387 (625)
T ss_pred EEeccccceehhhhhchhhhhhhhhcCCCceeeechhhccccccEEEehhcccceecchHhhhhhheeEecCCCCHhHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEecCc
Q psy683 82 NRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRRSM 134 (137)
Q Consensus 82 n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~~~ 134 (137)
|+|+.++..|+|+.+++.+++|+|+|+++...|++++++++|.+++|+|..++
T Consensus 388 n~ihSGkq~GVyFydng~glle~ndi~~~~ysgvqirtGsNP~i~~NkIWggq 440 (625)
T KOG1777|consen 388 NRIHSGKQVGVYFYDNGHGLLEQNDIRNHKYSGVQIRTGSNPKIRRNKIWGGQ 440 (625)
T ss_pred hcccccceeEEEEEeCCcchhhhhhhhhccccceEeecCCCCeeeecceecCc
Confidence 99999999999999999999999999999999999999999999999999886
No 3
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=99.74 E-value=2.4e-17 Score=115.48 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=65.9
Q ss_pred eEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
.-+|++|+|+++...||++...+..+|++|+|++ ...||++.......+++|.+.++. .|+.+...+.++|++|+|++
T Consensus 10 ~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~ 87 (158)
T PF13229_consen 10 NVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIEN 87 (158)
T ss_dssp C-EEESEEEESSSSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEEC
T ss_pred CeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEc
Confidence 3466677777766667776666656666666666 446666666555555566555555 45555555555555555555
Q ss_pred CCcccEEEEe-CCeeEEEccEEEccccCcEEEecCC--CeEEeceEEecC
Q psy683 87 GKQVGVYFYD-NGHGKLEDNDIFNHLYSGVQISNET--TATLDACGLRRS 133 (137)
Q Consensus 87 ~~~~GI~v~~-~~~g~ie~n~I~~n~~~Gi~v~~~a--~p~l~~n~I~~~ 133 (137)
+...||++.. ....++++|+|+++...|+++...+ ..++.+|+|.++
T Consensus 88 ~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~ 137 (158)
T PF13229_consen 88 NGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNN 137 (158)
T ss_dssp SSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECE
T ss_pred CCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeC
Confidence 5555555554 4555555555555555555555555 444455555543
No 4
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=99.72 E-value=8e-17 Score=112.77 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=99.9
Q ss_pred cceEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEcc-CCccEEEeeE
Q psy683 5 KGKAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITT-GSAPVLRRNR 83 (137)
Q Consensus 5 ~g~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~-~a~~~i~~n~ 83 (137)
.+..+|++|+|++ ...||++...++.++++|+++++. .|+.+...+..+|++|+|+++...||++.. .+.++|++|+
T Consensus 31 ~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~ 108 (158)
T PF13229_consen 31 SSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNT 108 (158)
T ss_dssp SCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-E
T ss_pred CCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEE
Confidence 3445999999999 889999999899999999999988 999999999999999999999999999997 8999999999
Q ss_pred EEcCCcccEEEEeCC--eeEEEccEEEccccCcEEEecCCC-eEEeceEE
Q psy683 84 IHSGKQVGVYFYDNG--HGKLEDNDIFNHLYSGVQISNETT-ATLDACGL 130 (137)
Q Consensus 84 I~~~~~~GI~v~~~~--~g~ie~n~I~~n~~~Gi~v~~~a~-p~l~~n~I 130 (137)
+++++..||++.... ..++++|+|+++...||++...+. +++.+|+|
T Consensus 109 ~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 109 IHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp EECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred EEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 999999999999998 788899999999999999988887 99999875
No 5
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=99.56 E-value=1.8e-13 Score=103.41 Aligned_cols=119 Identities=20% Similarity=0.326 Sum_probs=68.5
Q ss_pred EEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcC
Q psy683 8 AQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSG 87 (137)
Q Consensus 8 g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~ 87 (137)
.+|++|+|..+ ..||++......++++|.+.++. .||++......+|++|.|.++.. ||.+......+|++|.|. +
T Consensus 46 ~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~n~~-GI~l~~s~~~~I~~N~i~-~ 121 (236)
T PF05048_consen 46 NTISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISNNGY-GIYLYGSSNNTISNNTIS-N 121 (236)
T ss_pred eEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecCCCc-eEEEeeCCceEEECcEEe-C
Confidence 35555555555 45566655555566666666555 66666555555666666666555 666655555566666665 4
Q ss_pred CcccEEEEeCCeeEEEccEEEccccCcEE-EecCCCeEEeceEE
Q psy683 88 KQVGVYFYDNGHGKLEDNDIFNHLYSGVQ-ISNETTATLDACGL 130 (137)
Q Consensus 88 ~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~-v~~~a~p~l~~n~I 130 (137)
...||++......++++|+|.+|...||+ +..+....|..|.+
T Consensus 122 ~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 122 NGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred CCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 44566666555556666666666555666 44455555555554
No 6
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.54 E-value=4.7e-13 Score=105.78 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=112.8
Q ss_pred EEEEeeEEEcCccCCEEEecCCCcEEeccEEE-------cCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEE
Q psy683 8 AQVLMMVHCGNALAGIQIRTSSDPIVRHNKIH-------HGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLR 80 (137)
Q Consensus 8 g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~-------~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~ 80 (137)
-+|++..|.+.+..||++....+.+|++++|. ++...||++......+|++|+|+++...||++..+.+.+++
T Consensus 65 VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~ 144 (314)
T TIGR03805 65 VTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVR 144 (314)
T ss_pred eEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEE
Confidence 47899999999999999988889999999997 24568999999999999999999999999999999999999
Q ss_pred eeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEE--------ecCCCeEEeceEEecCc
Q psy683 81 RNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQI--------SNETTATLDACGLRRSM 134 (137)
Q Consensus 81 ~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v--------~~~a~p~l~~n~I~~~~ 134 (137)
+|++++++ .||++.......+++|.+++|. .|+++ ..+.+..+++|++.++.
T Consensus 145 nN~~~~n~-~GI~i~~S~~~~v~~N~~~~N~-~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~ 204 (314)
T TIGR03805 145 NNVAEENV-AGIEIENSQNADVYNNIATNNT-GGILVFDLPGLPQPGGSNVRVFDNIIFDNN 204 (314)
T ss_pred CCEEccCc-ceEEEEecCCcEEECCEEeccc-eeEEEeecCCCCcCCccceEEECCEEECCC
Confidence 99999986 6999999999999999999998 59999 45678899999998774
No 7
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=99.53 E-value=5.2e-13 Score=100.87 Aligned_cols=123 Identities=18% Similarity=0.323 Sum_probs=112.0
Q ss_pred ceEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEE
Q psy683 6 GKAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 85 (137)
Q Consensus 6 g~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~ 85 (137)
....|+++.+... ..||++......+|++|+|.++ ..||.+......+|++|.+..+. .||.+...++.+|++|+|.
T Consensus 22 ~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~ 98 (236)
T PF05048_consen 22 SNNSIENNTISNS-RDGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTIS 98 (236)
T ss_pred CCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEec
Confidence 3446788888875 5899998999999999999998 59999999999999999999998 8999999987899999999
Q ss_pred cCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEecC
Q psy683 86 SGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRRS 133 (137)
Q Consensus 86 ~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~~ 133 (137)
.+.. ||++......+|++|+|. +...||++......+|++|+|..+
T Consensus 99 ~n~~-GI~l~~s~~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 99 NNGY-GIYLYGSSNNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNN 144 (236)
T ss_pred CCCc-eEEEeeCCceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCC
Confidence 9987 999999999999999999 666899999999999999999987
No 8
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.50 E-value=8.4e-13 Score=104.33 Aligned_cols=110 Identities=25% Similarity=0.227 Sum_probs=93.1
Q ss_pred eEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEE--------ccCCccE
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWI--------TTGSAPV 78 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v--------~~~a~~~ 78 (137)
..+|++|+|+++...||++..+.+.+|++|+++++. .||.+..+....+++|.+++|. .|+++ ..+.+.+
T Consensus 117 ~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~n~-~GI~i~~S~~~~v~~N~~~~N~-~Gi~v~~~p~~~~~~s~~~~ 194 (314)
T TIGR03805 117 NVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEENV-AGIEIENSQNADVYNNIATNNT-GGILVFDLPGLPQPGGSNVR 194 (314)
T ss_pred CEEEECCEEECCCcccEEECCCCCeEEECCEEccCc-ceEEEEecCCcEEECCEEeccc-eeEEEeecCCCCcCCccceE
Confidence 357889999998888999988888999999998876 7999988888889999998887 58888 5567888
Q ss_pred EEeeEEEcCC----------------cccEEEEeCCeeEEEccEEEccccCcEEEe
Q psy683 79 LRRNRIHSGK----------------QVGVYFYDNGHGKLEDNDIFNHLYSGVQIS 118 (137)
Q Consensus 79 i~~n~I~~~~----------------~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~ 118 (137)
+++|.+.++. +.||++....+-.+++|+|.+|..+||++.
T Consensus 195 v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 195 VFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred EECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 9999988773 448888888888999999999999999875
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.40 E-value=1.3e-11 Score=100.65 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=87.0
Q ss_pred EEEeeEEEcCc------cCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEee
Q psy683 9 QVLMMVHCGNA------LAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRN 82 (137)
Q Consensus 9 ~i~~c~I~~~~------~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n 82 (137)
+|++++|.+.. .++|++....+.+|++|+|.++..+||++.+.. +.+++|+|.++...+|.+.......+++|
T Consensus 118 TIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~~~~I~lw~S~g~~V~~N 196 (455)
T TIGR03808 118 GLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDISGNTITQIAVTAIVSFDALGLIVARN 196 (455)
T ss_pred EEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceEecceEeccccceEEEeccCCCEEECC
Confidence 55666666654 567777555577777777777756777777665 77777777777777777777777777777
Q ss_pred EEEcCCcccEEE------------------------------------EeCCeeEEEccEEEccccCcEEEecCCCeEEe
Q psy683 83 RIHSGKQVGVYF------------------------------------YDNGHGKLEDNDIFNHLYSGVQISNETTATLD 126 (137)
Q Consensus 83 ~I~~~~~~GI~v------------------------------------~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~ 126 (137)
+|.+.++.||.+ ......++++|+|++...+||++..+++..++
T Consensus 197 ~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~ 276 (455)
T TIGR03808 197 TIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQIT 276 (455)
T ss_pred EEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEE
Confidence 777766655554 44455567788888887778888777777888
Q ss_pred ceEEec
Q psy683 127 ACGLRR 132 (137)
Q Consensus 127 ~n~I~~ 132 (137)
+|++++
T Consensus 277 ~N~~~~ 282 (455)
T TIGR03808 277 GNSVSD 282 (455)
T ss_pred CcEeee
Confidence 877765
No 10
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.20 E-value=6.9e-10 Score=90.67 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=66.2
Q ss_pred eEEEEeeEEEcCccCCEEEecCC----------------------CcEEeccEEEcCCCCcEEEEeCc---e-eEEEeeE
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSS----------------------DPIVRHNKIHHGQHGGVYVHEKG---V-GLIEENE 60 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a----------------------~~~i~~n~I~~~~~~GI~v~~~~---~-~~i~~n~ 60 (137)
..+|++|+|.++...||++.... ...|++|+|.+++..||.+...+ . -.+.+|+
T Consensus 145 ~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~ 224 (455)
T TIGR03808 145 DVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNR 224 (455)
T ss_pred ceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccc
Confidence 34666777766655677766555 66666666666665555444220 0 1222333
Q ss_pred EEe---------CCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCC-eEEeceEE
Q psy683 61 VYA---------NTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETT-ATLDACGL 130 (137)
Q Consensus 61 I~~---------n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~-p~l~~n~I 130 (137)
+.+ ..+.||.+.....+++++|+|++++-+|||+.......|.+|.+++-.+-|++..-+-. ..+.+|.+
T Consensus 225 i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~~~~R~~alhymfs~~g~~i~~N~~ 304 (455)
T TIGR03808 225 IEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSVSDVREVALYSEFAFEGAVIANNTV 304 (455)
T ss_pred cccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEeeeeeeeEEEEEEeCCCcEEeccEE
Confidence 222 11234555555556666666666654566666666666666666655544555443333 44444444
Q ss_pred e
Q psy683 131 R 131 (137)
Q Consensus 131 ~ 131 (137)
.
T Consensus 305 ~ 305 (455)
T TIGR03808 305 D 305 (455)
T ss_pred e
Confidence 3
No 11
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.86 E-value=4.1e-08 Score=77.72 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=92.9
Q ss_pred EEEEeeEEEcC------ccCCEEEecCC-CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCC-------cCcEEEcc
Q psy683 8 AQVLMMVHCGN------ALAGIQIRTSS-DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT-------LAGVWITT 73 (137)
Q Consensus 8 g~i~~c~I~~~------~~~GI~v~~~a-~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~-------~~Gv~v~~ 73 (137)
.+++.|++++. ..+||++...+ .+.+++|++.+|. .||+++......+++|+|.+-. +.||+|..
T Consensus 79 ~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~-~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyN 157 (408)
T COG3420 79 VIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNS-FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYN 157 (408)
T ss_pred ceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccc-eEEEEeccCceEEEeeEEeeccccchhhccCceEEEc
Confidence 36778888853 34789988655 7888999999888 9999999999999999998754 56899999
Q ss_pred CCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEec
Q psy683 74 GSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRR 132 (137)
Q Consensus 74 ~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~ 132 (137)
.....+..|.|...+ .|||...+-..+|++|++++... |++.--.-...+++|.-++
T Consensus 158 a~~a~V~~ndisy~r-DgIy~~~S~~~~~~gnr~~~~Ry-gvHyM~t~~s~i~dn~s~~ 214 (408)
T COG3420 158 APGALVVGNDISYGR-DGIYSDTSQHNVFKGNRFRDLRY-GVHYMYTNDSRISDNSSRD 214 (408)
T ss_pred CCCcEEEcCcccccc-ceEEEcccccceecccchhheee-eEEEEeccCcEeecccccC
Confidence 899999999999986 59999888888888887777764 5544333344455444433
No 12
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.75 E-value=1.6e-07 Score=71.96 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=77.5
Q ss_pred cceEEEEeeEEEcC---ccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCc-eeEEEeeEEEeC----CcCcEEEccCCc
Q psy683 5 KGKAQVLMMVHCGN---ALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKG-VGLIEENEVYAN----TLAGVWITTGSA 76 (137)
Q Consensus 5 ~g~g~i~~c~I~~~---~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~-~~~i~~n~I~~n----~~~Gv~v~~~a~ 76 (137)
....+|..-+|... ...||+| +++.|+|++|+++++.+.||++.... ++.+.++.|.+| ...|+.+...+.
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~I-ess~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~ 174 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWI-ESSSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAA 174 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEE-ecCCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccC
Confidence 44556777777765 4567888 45588888888888888888888775 555554444333 234888887777
Q ss_pred c---EEEeeEEEcCCcccEEEEeCC-------eeEEEccEEEccccCcEEE
Q psy683 77 P---VLRRNRIHSGKQVGVYFYDNG-------HGKLEDNDIFNHLYSGVQI 117 (137)
Q Consensus 77 ~---~i~~n~I~~~~~~GI~v~~~~-------~g~ie~n~I~~n~~~Gi~v 117 (137)
| .|++|.|++|.. ||.+...+ .+..-+|.|+.|...-|+.
T Consensus 175 ~~~n~I~NN~I~~N~~-Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~ 224 (246)
T PF07602_consen 175 PVENKIENNIIENNNI-GIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNN 224 (246)
T ss_pred CccceeeccEEEeCCc-CeEeeccCCccccCCCCCCCCcEEecCcceeeEe
Confidence 7 788888888876 88876444 2224568888888777777
No 13
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.5e-07 Score=73.33 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=89.4
Q ss_pred ceEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCC-------CCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccE
Q psy683 6 GKAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQ-------HGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPV 78 (137)
Q Consensus 6 g~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~-------~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~ 78 (137)
..+.+++|++.+|. .||++...+...++.|+|.+-. +.||+++......|.+|+|+.- .+||++...-+.+
T Consensus 107 t~A~Vr~N~l~~n~-~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~ 184 (408)
T COG3420 107 TGAVVRHNDLIGNS-FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNV 184 (408)
T ss_pred ccceEEcccccccc-eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccce
Confidence 45689999999986 8999999999999999998633 5799999999999999999775 5689998888888
Q ss_pred EEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceE
Q psy683 79 LRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACG 129 (137)
Q Consensus 79 i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~ 129 (137)
+++|+.++.+ .|+.+.-.-...+++|..++|.. |+.+-.+-+.++++|+
T Consensus 185 ~~gnr~~~~R-ygvHyM~t~~s~i~dn~s~~N~v-G~ALMys~~l~V~~nr 233 (408)
T COG3420 185 FKGNRFRDLR-YGVHYMYTNDSRISDNSSRDNRV-GYALMYSDRLKVSDNR 233 (408)
T ss_pred ecccchhhee-eeEEEEeccCcEeecccccCCcc-eEEEEEeccEEEEcCc
Confidence 8888888775 56655544444555555555553 5444444444444443
No 14
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.48 E-value=1.8e-06 Score=66.18 Aligned_cols=96 Identities=22% Similarity=0.332 Sum_probs=76.4
Q ss_pred EEEecCCCcEEeccEEEcC---CCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEee-----EEEcCCcccEE
Q psy683 23 IQIRTSSDPIVRHNKIHHG---QHGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRN-----RIHSGKQVGVY 93 (137)
Q Consensus 23 I~v~~~a~~~i~~n~I~~~---~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n-----~I~~~~~~GI~ 93 (137)
+.|......+|++-+|... ++.||++... .++|++|.|+++...||.+...+ +|.+.++ .++.+ ..||.
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~-~~Gi~ 168 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFN-KTGIS 168 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEec-CcCeE
Confidence 5565667788999999876 5578999655 89999999999999999997663 6665555 45544 46999
Q ss_pred EEeCCee---EEEccEEEccccCcEEEecCC
Q psy683 94 FYDNGHG---KLEDNDIFNHLYSGVQISNET 121 (137)
Q Consensus 94 v~~~~~g---~ie~n~I~~n~~~Gi~v~~~a 121 (137)
+.+...+ .+|+|.|++|.. ||.+...+
T Consensus 169 i~~~~~~~~n~I~NN~I~~N~~-Gi~~~~~~ 198 (246)
T PF07602_consen 169 ISDNAAPVENKIENNIIENNNI-GIVAIGDA 198 (246)
T ss_pred EEcccCCccceeeccEEEeCCc-CeEeeccC
Confidence 9988888 789999999998 99977554
No 15
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=98.25 E-value=4.7e-06 Score=47.13 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=30.4
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT 65 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~ 65 (137)
||+++....++|++|+|++++. ||++..+...++++|.+.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~n~ 43 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASSNS 43 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEcCc
Confidence 5677777777777777777664 777777777777777776653
No 16
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=98.21 E-value=5.2e-06 Score=46.96 Aligned_cols=42 Identities=21% Similarity=0.480 Sum_probs=20.6
Q ss_pred cEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 68 GVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 68 Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
||.+.....++|++|+|++++. ||++......++++|++.+|
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEcC
Confidence 3444444444555555555443 55555444445555554444
No 17
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.67 E-value=0.00092 Score=49.13 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=71.7
Q ss_pred EEEeeEEEcCcc------CCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEee
Q psy683 9 QVLMMVHCGNAL------AGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRN 82 (137)
Q Consensus 9 ~i~~c~I~~~~~------~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n 82 (137)
+|++..|..... .|+.+....+..|++++++++...|+++.......+.+.... .++.+..++...+..+
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 170 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHV----SGIFIDNGSNNVIVNN 170 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEE----EEEEEESCEEEEEEEC
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccc----eeeeeccceeEEEECC
Confidence 366666666542 345555555667777777777777777763322223222211 1455554445555455
Q ss_pred EEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEecCc
Q psy683 83 RIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRRSM 134 (137)
Q Consensus 83 ~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~~~ 134 (137)
.+......|++.. ...-++++|.+..+...||.+..+++.++++|+|+++.
T Consensus 171 ~~~~~~~~g~~~~-~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 171 CIFNGGDNGIILG-NNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp EEEESSSCSEECE-EEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred ccccCCCceeEee-cceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 5555566774322 23556778887777778998888888888888888763
No 18
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.66 E-value=0.0023 Score=46.96 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=72.8
Q ss_pred eEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
...|++|++++....|+++.......+.+.... .++++..+....+..+-+......|+ .......++++|.+..
T Consensus 122 ~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~i~n~~~~~ 196 (225)
T PF12708_consen 122 NVSISNVRIENSGGDGIYFNTGTDYRIIGSTHV----SGIFIDNGSNNVIVNNCIFNGGDNGI-ILGNNNITISNNTFEG 196 (225)
T ss_dssp EEEEEEEEEES-SS-SEEEECCEECEEECCEEE----EEEEEESCEEEEEEECEEEESSSCSE-ECEEEEEEEECEEEES
T ss_pred eEEEEeEEEEccCccEEEEEccccCcEeecccc----eeeeeccceeEEEECCccccCCCcee-EeecceEEEEeEEECC
Confidence 358899999999999999973333333333222 36777766566665666667777784 2223577889999888
Q ss_pred CCcccEEEEeCCeeEEEccEEEccccCcE
Q psy683 87 GKQVGVYFYDNGHGKLEDNDIFNHLYSGV 115 (137)
Q Consensus 87 ~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi 115 (137)
....||.+.....-++++|+|.+... ||
T Consensus 197 ~~~~gi~i~~~~~~~i~n~~i~~~~~-g~ 224 (225)
T PF12708_consen 197 NCGNGINIEGGSNIIISNNTIENCDD-GI 224 (225)
T ss_dssp SSSESEEEEECSEEEEEEEEEESSSE-EE
T ss_pred ccceeEEEECCeEEEEEeEEEECCcc-Cc
Confidence 78899999999998899999988764 54
No 19
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=97.29 E-value=0.0055 Score=41.75 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=27.9
Q ss_pred CccEEEeeEEEcC---CcccEEEEeCCeeEEEccEEEccc---cCcEEEecCCCeEEec
Q psy683 75 SAPVLRRNRIHSG---KQVGVYFYDNGHGKLEDNDIFNHL---YSGVQISNETTATLDA 127 (137)
Q Consensus 75 a~~~i~~n~I~~~---~~~GI~v~~~~~g~ie~n~I~~n~---~~Gi~v~~~a~p~l~~ 127 (137)
....+.+|.+... ...||++.......+++|.+. . ..|++++......+.+
T Consensus 76 ~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~--~~~~g~G~~~~~~~~~~~~~ 132 (146)
T smart00722 76 GKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII--TNNDGDGNYLSDSSGGDLIG 132 (146)
T ss_pred cccEEEcceecCCCccceEEEEEECCccceEecCeEE--eecCCCCEEEeCCCCcEEEc
Confidence 3445555555554 245666665555555555554 1 3566666655555555
No 20
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=97.09 E-value=0.0057 Score=41.68 Aligned_cols=65 Identities=31% Similarity=0.462 Sum_probs=50.2
Q ss_pred CceeEEEeeEEEeC---CcCcEEEccCCccEEEeeEEEcCC---cccEEEEeCCeeEEEccEEEccccCcEEE
Q psy683 51 KGVGLIEENEVYAN---TLAGVWITTGSAPVLRRNRIHSGK---QVGVYFYDNGHGKLEDNDIFNHLYSGVQI 117 (137)
Q Consensus 51 ~~~~~i~~n~I~~n---~~~Gv~v~~~a~~~i~~n~I~~~~---~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v 117 (137)
.....+.+|.+..+ ...|+++...+...+.+|.+. . +.|+++.......+++|.+..+...|+++
T Consensus 75 ~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~--~~~~g~G~~~~~~~~~~~~~~~~~~~~~~Gi~~ 145 (146)
T smart00722 75 TGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII--TNNDGDGNYLSDSSGGDLIGNRIYDNGRDGIAV 145 (146)
T ss_pred ccccEEEcceecCCCccceEEEEEECCccceEecCeEE--eecCCCCEEEeCCCCcEEEcceeEecCCCcEee
Confidence 33567888888776 377898888888888888887 3 68999999888888886666666677765
No 21
>PLN02218 polygalacturonase ADPG
Probab=97.09 E-value=0.03 Score=46.39 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=68.6
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcC----CCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEeeE
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHG----QHGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRNR 83 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~----~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n~ 83 (137)
+|++-+|.+....-+.+....+.++++-+|... ...||-+......+|++|.|.. ..+.|.+..++ +.++++|.
T Consensus 204 ~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-GDDcIaIksgs~nI~I~n~~ 282 (431)
T PLN02218 204 IVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-GDDCISIESGSQNVQINDIT 282 (431)
T ss_pred EEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-CCceEEecCCCceEEEEeEE
Confidence 556667777777777777777777777777641 2367877777677777776643 35667777655 45667766
Q ss_pred EEcCCcccEEEEeCCe---------eEEEccEEEccccCcEEEec
Q psy683 84 IHSGKQVGVYFYDNGH---------GKLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 84 I~~~~~~GI~v~~~~~---------g~ie~n~I~~n~~~Gi~v~~ 119 (137)
... ++||.+...++ -++++|++.+.. .|+.++.
T Consensus 283 c~~--GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT 324 (431)
T PLN02218 283 CGP--GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKT 324 (431)
T ss_pred EEC--CCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEee
Confidence 643 46777655432 246666665554 4777764
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.87 E-value=0.052 Score=45.30 Aligned_cols=107 Identities=13% Similarity=0.169 Sum_probs=73.0
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcC----CCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEeeE
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHG----QHGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRNR 83 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~----~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n~ 83 (137)
+|++-++.+.+..-+.+....+.++.+-+|... ...||-+.......|++|.|. +..+.|.+..++ +.+++++.
T Consensus 150 ~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~-tGDDCIaiksgs~NI~I~n~~ 228 (456)
T PLN03003 150 RLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIA-TGDDCIAINSGTSNIHISGID 228 (456)
T ss_pred EEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEe-cCCCeEEeCCCCccEEEEeeE
Confidence 556666777777777777777788888777642 126888877777778888664 445678887665 66677776
Q ss_pred EEcCCcccEEEEeCCee---------EEEccEEEccccCcEEEec
Q psy683 84 IHSGKQVGVYFYDNGHG---------KLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 84 I~~~~~~GI~v~~~~~g---------~ie~n~I~~n~~~Gi~v~~ 119 (137)
... ++||.+...+++ ++++|.+.+.. .|+.++.
T Consensus 229 c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~-nGvRIKT 270 (456)
T PLN03003 229 CGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTM-NGARIKT 270 (456)
T ss_pred EEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCC-cEEEEEE
Confidence 653 478887655432 47777777654 5777764
No 23
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.85 E-value=0.079 Score=43.61 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=70.4
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcC----CCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEeeE
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHG----QHGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRNR 83 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~----~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n~ 83 (137)
.|++-++.+.....+.+....+.++.+-+|... ...||-+......+|++|.|.. ..+.|.+..++ +.+++++.
T Consensus 167 ~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-GDDcIaiksg~~nI~I~n~~ 245 (404)
T PLN02188 167 VVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-GDDCISIGQGNSQVTITRIR 245 (404)
T ss_pred EEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-CCcEEEEccCCccEEEEEEE
Confidence 556667777777777777777788888787642 2268888777777788876643 45678886544 55666665
Q ss_pred EEcCCcccEEEEe----CC-----eeEEEccEEEccccCcEEEec
Q psy683 84 IHSGKQVGVYFYD----NG-----HGKLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 84 I~~~~~~GI~v~~----~~-----~g~ie~n~I~~n~~~Gi~v~~ 119 (137)
.. .++||.+.. +. .-++++|.+.+.. .|+.++.
T Consensus 246 c~--~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt 287 (404)
T PLN02188 246 CG--PGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKT 287 (404)
T ss_pred Ec--CCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEE
Confidence 53 247777643 11 1257777777765 4888764
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.80 E-value=0.039 Score=43.92 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=77.4
Q ss_pred EEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCC----CCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEee
Q psy683 8 AQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQ----HGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRN 82 (137)
Q Consensus 8 g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~----~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n 82 (137)
.+|++-.|.+.....+.+....+.++++-+|.... ..||-+......+|++|.| .+..+.|.+..++ +.++++|
T Consensus 103 ~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i-~~gDD~Iaiks~~~ni~v~n~ 181 (326)
T PF00295_consen 103 VTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFI-DNGDDCIAIKSGSGNILVENC 181 (326)
T ss_dssp EEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEE-ESSSESEEESSEECEEEEESE
T ss_pred eEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeec-ccccCcccccccccceEEEeE
Confidence 46777888888888888877778888988887532 3699887766777888877 4456788888765 7778888
Q ss_pred EEEcCCcccEEEEeCCe---------eEEEccEEEccccCcEEEec
Q psy683 83 RIHSGKQVGVYFYDNGH---------GKLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 83 ~I~~~~~~GI~v~~~~~---------g~ie~n~I~~n~~~Gi~v~~ 119 (137)
.+.. ++||.+...+. -++++|+|.+.. .|++++.
T Consensus 182 ~~~~--ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt 224 (326)
T PF00295_consen 182 TCSG--GHGISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKT 224 (326)
T ss_dssp EEES--SSEEEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEE
T ss_pred EEec--cccceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEE
Confidence 8765 46787753332 357888888765 5888765
No 25
>PLN02793 Probable polygalacturonase
Probab=96.76 E-value=0.16 Score=42.34 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=64.0
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcC----CCCcEEEEeCceeEEEeeEEEeCCcCcEEEc-cCCccEEEeeE
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHG----QHGGVYVHEKGVGLIEENEVYANTLAGVWIT-TGSAPVLRRNR 83 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~----~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~-~~a~~~i~~n~ 83 (137)
+|++-++.+....-+.+....+.++++-+|... ...||-+......+|++|.|. +..+.|.+. ...+.+|+++.
T Consensus 189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~-~gDDcIaik~~s~nI~I~n~~ 267 (443)
T PLN02793 189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVR-TGDDCISIVGNSSRIKIRNIA 267 (443)
T ss_pred EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEe-CCCCeEEecCCcCCEEEEEeE
Confidence 455556666666666666666777777777541 225777766666777777654 445567775 34555666665
Q ss_pred EEcCCcccEEEEeCCe---------eEEEccEEEccccCcEEEec
Q psy683 84 IHSGKQVGVYFYDNGH---------GKLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 84 I~~~~~~GI~v~~~~~---------g~ie~n~I~~n~~~Gi~v~~ 119 (137)
... ++||.+...++ -++++|.+.+.. .|+.++.
T Consensus 268 c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt 309 (443)
T PLN02793 268 CGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKT 309 (443)
T ss_pred EeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEE
Confidence 543 36776654322 256666666554 4777663
No 26
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.74 E-value=0.058 Score=44.03 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=73.6
Q ss_pred EEEEeeEEEcCc-cCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 8 AQVLMMVHCGNA-LAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 8 g~i~~c~I~~~~-~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
-+|.+|.+..-. ..|+++....+.+|-+|...+. .|..+.-.+.+.+++|.++.+- -||.-..-+...+++|....
T Consensus 123 VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf--~g~cl~~~~~~~VrGC~F~~C~-~gi~~~~~~~lsVk~C~Fek 199 (386)
T PF01696_consen 123 VTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF--HGTCLESWAGGEVRGCTFYGCW-KGIVSRGKSKLSVKKCVFEK 199 (386)
T ss_pred eEEEEEEEecCCccceeEEEecceEEEEeeEEecC--cceeEEEcCCcEEeeeEEEEEE-EEeecCCcceEEeeheeeeh
Confidence 467777777766 6777777777777777777754 3455555667777788777763 36655555666777777666
Q ss_pred CCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEe
Q psy683 87 GKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLR 131 (137)
Q Consensus 87 ~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~ 131 (137)
+. -||. .++...+.+|.+.++. ..+...+...+++|.|-
T Consensus 200 C~-igi~--s~G~~~i~hn~~~ec~---Cf~l~~g~g~i~~N~v~ 238 (386)
T PF01696_consen 200 CV-IGIV--SEGPARIRHNCASECG---CFVLMKGTGSIKHNMVC 238 (386)
T ss_pred eE-EEEE--ecCCeEEecceecccc---eEEEEcccEEEeccEEe
Confidence 64 4653 3555666677766665 33333445666666665
No 27
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=96.63 E-value=0.091 Score=43.45 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=64.4
Q ss_pred eEEEEeeEEEcCccCCEEE--e--cC-C-----CcEEeccEEE------cCCCCcEEEEeC------ceeEEEeeEEEeC
Q psy683 7 KAQVLMMVHCGNALAGIQI--R--TS-S-----DPIVRHNKIH------HGQHGGVYVHEK------GVGLIEENEVYAN 64 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v--~--~~-a-----~~~i~~n~I~------~~~~~GI~v~~~------~~~~i~~n~I~~n 64 (137)
..+|.+|.|.+-...|..+ + .. . .-+|.+|-+. .+++..|.+..+ +.-+||+|-+..+
T Consensus 132 ~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~c 211 (425)
T PF14592_consen 132 HNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERC 211 (425)
T ss_dssp S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE
T ss_pred CceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhc
Confidence 3467777777754444333 2 11 1 2245555554 223344555332 3467888887777
Q ss_pred CcCcEEEc-cCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccc----cCcEEEecCCCeEEeceEEecCc
Q psy683 65 TLAGVWIT-TGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHL----YSGVQISNETTATLDACGLRRSM 134 (137)
Q Consensus 65 ~~~Gv~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~----~~Gi~v~~~a~p~l~~n~I~~~~ 134 (137)
.+.-=.|. +++..++++|.++++++ +|.+..+-..++++|-+.++. ..||.|. +..-+|.+|-+.+..
T Consensus 212 dGE~EIISvKS~~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi-~~~H~I~nNY~~gl~ 284 (425)
T PF14592_consen 212 DGEVEIISVKSSDNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRII-GEGHTIYNNYFEGLT 284 (425)
T ss_dssp -SSSEEEEEESBT-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE--SBS-EEES-EEEESS
T ss_pred CCceeEEEeecCCceEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEe-cCCcEEEcceeeccc
Confidence 66533333 57888999999999975 888889899999999999986 3599997 557888888777643
No 28
>PLN02218 polygalacturonase ADPG
Probab=96.57 E-value=0.11 Score=43.12 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=85.0
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeC----CcCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYAN----TLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n----~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
.|.+....+.+|++-++.+....-+.+......++.+-.|... ..+||.+....+.+|.+|.|..+ +..|.+..+
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksg 272 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESG 272 (431)
T ss_pred EEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-CceEEecCC
Confidence 4566677788999999999999999998888888888888752 34799999999999999999887 679999887
Q ss_pred Ce-eEEEccEEEccccCcEEEecCC---------CeEEeceEEecC
Q psy683 98 GH-GKLEDNDIFNHLYSGVQISNET---------TATLDACGLRRS 133 (137)
Q Consensus 98 ~~-g~ie~n~I~~n~~~Gi~v~~~a---------~p~l~~n~I~~~ 133 (137)
.+ -++++|.+.. .+||.+.... +.++++|++.++
T Consensus 273 s~nI~I~n~~c~~--GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t 316 (431)
T PLN02218 273 SQNVQINDITCGP--GHGISIGSLGDDNSKAFVSGVTVDGAKLSGT 316 (431)
T ss_pred CceEEEEeEEEEC--CCCEEECcCCCCCCCceEEEEEEEccEEecC
Confidence 75 5677887743 5688886533 345666666654
No 29
>PLN02155 polygalacturonase
Probab=96.55 E-value=0.14 Score=42.08 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcCC----CCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEeeE
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQ----HGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRNR 83 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~----~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n~ 83 (137)
+|++-++......-+.+....+.++.+-+|.... ..||-+......+|++|.|.. ..+.|.+..++ +.++++|.
T Consensus 157 ~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-gDDcIaik~gs~nI~I~n~~ 235 (394)
T PLN02155 157 IISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-GDDCVAIGPGTRNFLITKLA 235 (394)
T ss_pred EEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-CCceEEcCCCCceEEEEEEE
Confidence 3444455555555555555556666666664311 146666555555666665533 34466665543 44555555
Q ss_pred EEcCCcccEEEEeCC---------eeEEEccEEEccccCcEEEec
Q psy683 84 IHSGKQVGVYFYDNG---------HGKLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 84 I~~~~~~GI~v~~~~---------~g~ie~n~I~~n~~~Gi~v~~ 119 (137)
... ++||.+...+ .-++++|.+.+.. .|+.++.
T Consensus 236 c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT 277 (394)
T PLN02155 236 CGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKS 277 (394)
T ss_pred EEC--CceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEE
Confidence 543 3566654421 1134455544443 4666654
No 30
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=96.50 E-value=0.082 Score=39.03 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=73.1
Q ss_pred EEEeeEEEcCccCCEEEecC--------C-CcEEeccEEEcCCC-------CcEEEEeCceeEEEeeEEEeCCcCcEEEc
Q psy683 9 QVLMMVHCGNALAGIQIRTS--------S-DPIVRHNKIHHGQH-------GGVYVHEKGVGLIEENEVYANTLAGVWIT 72 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~--------a-~~~i~~n~I~~~~~-------~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~ 72 (137)
.|=++.|+....+||+|-+- | +..|-+|.+.+++. .||...+=-..+||+|.|-++.+.+|.-.
T Consensus 5 EIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~ 84 (198)
T PF08480_consen 5 EIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQM 84 (198)
T ss_pred EEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEE
Confidence 46688999999999998743 2 45667777777664 36766555578999999999999888764
Q ss_pred ----------cCCccEEEeeEEEcCC---------cccEEE--EeCCeeEEEccEEEcccc
Q psy683 73 ----------TGSAPVLRRNRIHSGK---------QVGVYF--YDNGHGKLEDNDIFNHLY 112 (137)
Q Consensus 73 ----------~~a~~~i~~n~I~~~~---------~~GI~v--~~~~~g~ie~n~I~~n~~ 112 (137)
.+-..++|+|.|...+ +.||.= .+.-.-+||.|-+++|..
T Consensus 85 y~~~~~sp~gsgyttivRNNII~NT~~r~~~~~GtGYgv~N~L~~tHsFvLenNclYnN~a 145 (198)
T PF08480_consen 85 YPDYDLSPKGSGYTTIVRNNIIVNTRKRKSSPAGTGYGVINYLPETHSFVLENNCLYNNAA 145 (198)
T ss_pred ecccccCCCCCceEEEEEcceEeeeeecccCCCCceeEEEecCCCcceEEEEccceeccCc
Confidence 2344567888887655 333331 123345789999999974
No 31
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=96.41 E-value=0.2 Score=41.51 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=64.0
Q ss_pred ecceEEEEeeEEEcCccCCEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCc----CcEEEccCCccE
Q psy683 4 QKGKAQVLMMVHCGNALAGIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTL----AGVWITTGSAPV 78 (137)
Q Consensus 4 ~~g~g~i~~c~I~~~~~~GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~----~Gv~v~~~a~~~ 78 (137)
..+.-+|++|.|..+...-=.|. .++..++++|+++++. .++.+.-+...++++|-+.++.. .||.|... +=+
T Consensus 197 ~~s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~-G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~-~H~ 274 (425)
T PF14592_consen 197 SDSNTTVENNLFERCDGEVEIISVKSSDNTIRNNTFRESQ-GSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGE-GHT 274 (425)
T ss_dssp -----EEES-EEEEE-SSSEEEEEESBT-EEES-EEES-S-SEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SB-S-E
T ss_pred cccceeeecchhhhcCCceeEEEeecCCceEeccEEEecc-ceEEEecCCCceEeccEEecCCCcCCCCceEEecC-CcE
Confidence 34666888888888755433344 5668899999999888 78888878888999999998763 48998744 448
Q ss_pred EEeeEEEcCCc----ccEEEEeC------------CeeEEEccEEEccccCcEEEec
Q psy683 79 LRRNRIHSGKQ----VGVYFYDN------------GHGKLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 79 i~~n~I~~~~~----~GI~v~~~------------~~g~ie~n~I~~n~~~Gi~v~~ 119 (137)
|.+|-+...++ .++.+... -+.++++|++-++. ..|.+..
T Consensus 275 I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~-~~i~~g~ 330 (425)
T PF14592_consen 275 IYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK-SPIHFGA 330 (425)
T ss_dssp EES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S-EEEESST
T ss_pred EEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC-CceEEcc
Confidence 88888877653 34443321 23467888888887 5666554
No 32
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=96.30 E-value=0.032 Score=41.13 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=35.6
Q ss_pred CcEEeccEEEcCCCCcEEEEeCc---------eeEEEeeEEEeCCc-------CcEEEccCCccEEEeeEEEcCCcccEE
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKG---------VGLIEENEVYANTL-------AGVWITTGSAPVLRRNRIHSGKQVGVY 93 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~---------~~~i~~n~I~~n~~-------~Gv~v~~~a~~~i~~n~I~~~~~~GI~ 93 (137)
+..|-+|.|++..+.||++.+.. ...|.+|.|++... .||....--+..|++|.+......||.
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~ 82 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIA 82 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEE
Confidence 35677888988888899888752 23455666655432 133332222444444444444444444
No 33
>PLN03010 polygalacturonase
Probab=96.27 E-value=0.34 Score=39.97 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=66.1
Q ss_pred EEEEeeEEEcCccCCEEEecCCCcEEeccEEEcC----CCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCC-ccEEEee
Q psy683 8 AQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHG----QHGGVYVHEKGVGLIEENEVYANTLAGVWITTGS-APVLRRN 82 (137)
Q Consensus 8 g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~----~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a-~~~i~~n 82 (137)
-+|++-++.+.+..-+.+....+.++++-+|... ...||-+......+|++|.| .+..+.|.+..++ +..++.+
T Consensus 168 v~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I-~~gDDcIaiksgs~ni~I~~~ 246 (409)
T PLN03010 168 LTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTI-QTGDDCIAINSGSSNINITQI 246 (409)
T ss_pred eEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEE-ecCCCeEEecCCCCcEEEEEE
Confidence 3566666666666677776666777777777642 22577777666677777755 3445677777654 4445544
Q ss_pred EEEcCCcccEEEEeCCee---------EEEccEEEccccCcEEEec
Q psy683 83 RIHSGKQVGVYFYDNGHG---------KLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 83 ~I~~~~~~GI~v~~~~~g---------~ie~n~I~~n~~~Gi~v~~ 119 (137)
... .++||.+...+++ ++++|.+.+.. .|++++.
T Consensus 247 ~C~--~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt 289 (409)
T PLN03010 247 NCG--PGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKT 289 (409)
T ss_pred EeE--CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEE
Confidence 443 2467777554332 46667766654 4666654
No 34
>smart00656 Amb_all Amb_all domain.
Probab=96.21 E-value=0.087 Score=38.86 Aligned_cols=122 Identities=11% Similarity=-0.011 Sum_probs=70.2
Q ss_pred EEEeeEEEcC------ccCCEEEecCCCcEEeccEEEcCC--------CCcEE-EEe-CceeEEEeeEEEeCCcCcEEEc
Q psy683 9 QVLMMVHCGN------ALAGIQIRTSSDPIVRHNKIHHGQ--------HGGVY-VHE-KGVGLIEENEVYANTLAGVWIT 72 (137)
Q Consensus 9 ~i~~c~I~~~------~~~GI~v~~~a~~~i~~n~I~~~~--------~~GI~-v~~-~~~~~i~~n~I~~n~~~Gv~v~ 72 (137)
.|++-+|+.. ...+|.+....+.-|.+|++.... ..|.. +.. ...-++..|.+.+. .-+..+.
T Consensus 43 Iirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h-~~~~liG 121 (190)
T smart00656 43 IIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNH-WKVMLLG 121 (190)
T ss_pred EEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecC-CEEEEEc
Confidence 3444555543 235777766667777778887751 23433 222 23345666666543 3345554
Q ss_pred cCC--------ccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEec
Q psy683 73 TGS--------APVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRR 132 (137)
Q Consensus 73 ~~a--------~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~ 132 (137)
.+. +.++.+|.+.....-.=.+.. +..-+-+|-++.....++.+..++...+++|.+..
T Consensus 122 ~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~-g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~ 188 (190)
T smart00656 122 HSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF-GYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEA 188 (190)
T ss_pred cCCCccccccceEEEECcEEcCcccCCCcccC-CEEEEEeeEEeCcccEeEecCCCcEEEEECeEEEC
Confidence 321 467777777665544444422 35556677766666677777777777777776543
No 35
>PLN02793 Probable polygalacturonase
Probab=95.96 E-value=0.37 Score=40.19 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=82.5
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeC----CcCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYAN----TLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n----~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
.|.+....+.+|++-++.+....-+.+......++++-+|... ..+||.+....+.+|++|.|..+ +.+|.+..+
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~ 257 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGN 257 (443)
T ss_pred EEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCC
Confidence 4666677788999999999988889888877778888888752 34799999999999999998876 679999754
Q ss_pred C-eeEEEccEEEccccCcEEEecCC---------CeEEeceEEecC
Q psy683 98 G-HGKLEDNDIFNHLYSGVQISNET---------TATLDACGLRRS 133 (137)
Q Consensus 98 ~-~g~ie~n~I~~n~~~Gi~v~~~a---------~p~l~~n~I~~~ 133 (137)
+ .-++++|.... ..||.+..-+ +.++++|++.++
T Consensus 258 s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t 301 (443)
T PLN02793 258 SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNT 301 (443)
T ss_pred cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCC
Confidence 4 44677776643 3688887531 136666766654
No 36
>PLN03003 Probable polygalacturonase At3g15720
Probab=95.86 E-value=0.37 Score=40.33 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=83.9
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeC----CcCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYAN----TLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n----~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
.|.+....+..|++-++.++...-+.+......++.+-.|... ..+||.+....+.+|.+|.|..+ +.+|.+..+
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksg 218 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSG 218 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecC-CCeEEeCCC
Confidence 4566666688899999999998899998888888888888763 23799999999999999998887 679999877
Q ss_pred C-eeEEEccEEEccccCcEEEecCCC---------eEEeceEEecC
Q psy683 98 G-HGKLEDNDIFNHLYSGVQISNETT---------ATLDACGLRRS 133 (137)
Q Consensus 98 ~-~g~ie~n~I~~n~~~Gi~v~~~a~---------p~l~~n~I~~~ 133 (137)
. .-++++|.... .+||.+..-.. .++++|.+.++
T Consensus 219 s~NI~I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 219 TSNIHISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred CccEEEEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 6 45677777753 46999876432 24666766654
No 37
>PLN02155 polygalacturonase
Probab=95.76 E-value=0.26 Score=40.45 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=82.3
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCC----cCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT----LAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~----~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
.|.+....+.+|++-++.++...-+.+......++.+-.|.... .+||.+....+.+|.+|.|..+ +.+|.+..+
T Consensus 147 ~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~g-DDcIaik~g 225 (394)
T PLN02155 147 SISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG-DDCVAIGPG 225 (394)
T ss_pred ceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecC-CceEEcCCC
Confidence 46666677888899999988888888887777888888887633 3799999999999999998887 579999876
Q ss_pred C-eeEEEccEEEccccCcEEEecC---------CCeEEeceEEecC
Q psy683 98 G-HGKLEDNDIFNHLYSGVQISNE---------TTATLDACGLRRS 133 (137)
Q Consensus 98 ~-~g~ie~n~I~~n~~~Gi~v~~~---------a~p~l~~n~I~~~ 133 (137)
. .-++++|.+.. .+||.+... .+.++++|++.++
T Consensus 226 s~nI~I~n~~c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 226 TRNFLITKLACGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred CceEEEEEEEEEC--CceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 5 45677877764 468888763 1235566666543
No 38
>PLN03010 polygalacturonase
Probab=95.69 E-value=0.55 Score=38.81 Aligned_cols=109 Identities=8% Similarity=0.121 Sum_probs=82.8
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeC----CcCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYAN----TLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n----~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
.+.+....+.+|++-++.+....-+.+......++++-.|... ..+||.+....+.+|++|.|... +.+|.+..+
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksg 237 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTG-DDCIAINSG 237 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecC-CCeEEecCC
Confidence 3666677889999999999998889888877788888888762 24799999999999999988887 689999877
Q ss_pred C-eeEEEccEEEccccCcEEEecCCC---------eEEeceEEecC
Q psy683 98 G-HGKLEDNDIFNHLYSGVQISNETT---------ATLDACGLRRS 133 (137)
Q Consensus 98 ~-~g~ie~n~I~~n~~~Gi~v~~~a~---------p~l~~n~I~~~ 133 (137)
+ .-.++.+... ..+||.+..... .++++|++.++
T Consensus 238 s~ni~I~~~~C~--~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 238 SSNINITQINCG--PGHGISVGSLGADGANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred CCcEEEEEEEeE--CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence 5 4456655554 346888876422 25666666654
No 39
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.67 E-value=0.13 Score=43.74 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=76.6
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCC---CcEEEEeCceeEEEeeEEEeCCcCcEEEccCCc---------
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQH---GGVYVHEKGVGLIEENEVYANTLAGVWITTGSA--------- 76 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~---~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~--------- 76 (137)
++++-.|......+++....++.++++-+|..... .|+-+......+|++|+|.. ..+.|.+..++.
T Consensus 250 ~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-gDD~I~iksg~~~~~~~~~~~ 328 (542)
T COG5434 250 LLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-GDDCIAIKSGAGLDGKKGYGP 328 (542)
T ss_pred EEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec-CCceEEeecccCCcccccccc
Confidence 57778888888889998888999999888876552 39988888888999998866 667787765443
Q ss_pred ---cEEEeeEEEcCCcccEEEE-eCCee-----EEEccEEEccccCcEEEec
Q psy683 77 ---PVLRRNRIHSGKQVGVYFY-DNGHG-----KLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 77 ---~~i~~n~I~~~~~~GI~v~-~~~~g-----~ie~n~I~~n~~~Gi~v~~ 119 (137)
.++++|.+..+ +|..+. .+..+ ++|+|.+.+ ..-|+.++.
T Consensus 329 ~~~i~i~~c~~~~g--hG~~v~Gse~~ggv~ni~ved~~~~~-~d~GLRikt 377 (542)
T COG5434 329 SRNIVIRNCYFSSG--HGGLVLGSEMGGGVQNITVEDCVMDN-TDRGLRIKT 377 (542)
T ss_pred cccEEEecceeccc--ccceEeeeecCCceeEEEEEeeeecc-Ccceeeeee
Confidence 45788887754 444443 33222 577777776 345777764
No 40
>PLN02480 Probable pectinesterase
Probab=95.52 E-value=0.89 Score=36.74 Aligned_cols=53 Identities=9% Similarity=0.156 Sum_probs=26.2
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
+..|.+|++.+.... ++. ...+-..++|.|..+-+ ||.+.+..+||+|+|+..
T Consensus 166 ra~f~~c~f~G~QDT-Ly~-~~gR~yf~~C~IeG~VD---FIFG~g~a~fe~C~i~s~ 218 (343)
T PLN02480 166 KVAFYHCAFYSTHNT-LFD-YKGRHYYHSCYIQGSID---FIFGRGRSIFHNCEIFVI 218 (343)
T ss_pred cEEEEeeEEecccce-eEe-CCCCEEEEeCEEEeeee---EEccceeEEEEccEEEEe
Confidence 344555555554332 322 23344455555544432 445556666666666654
No 41
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=95.23 E-value=0.78 Score=37.81 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=81.6
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeC----CcCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYAN----TLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n----~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
-|.+....+..|++-++.++...-+.+......++.+-.|... ..+||.+....+.+|.+|.|..+ +.+|.+..+
T Consensus 157 ~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-DDcIaiksg 235 (404)
T PLN02188 157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-DDCISIGQG 235 (404)
T ss_pred EEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-CcEEEEccC
Confidence 3455556677899999999998999998888888888888752 24799999999999999998887 569999766
Q ss_pred C-eeEEEccEEEccccCcEEEec----CC-----CeEEeceEEecC
Q psy683 98 G-HGKLEDNDIFNHLYSGVQISN----ET-----TATLDACGLRRS 133 (137)
Q Consensus 98 ~-~g~ie~n~I~~n~~~Gi~v~~----~a-----~p~l~~n~I~~~ 133 (137)
. .-++++|... ...||.+.. .. +.++++|.+.++
T Consensus 236 ~~nI~I~n~~c~--~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t 279 (404)
T PLN02188 236 NSQVTITRIRCG--PGHGISVGSLGRYPNEGDVTGLVVRDCTFTGT 279 (404)
T ss_pred CccEEEEEEEEc--CCCcEEeCCCCCCCcCCcEEEEEEEeeEEECC
Confidence 5 4456666663 346898854 11 125777777665
No 42
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=95.21 E-value=0.18 Score=40.13 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=79.0
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCC----cCcEEEccCCccEEEeeEEEcCCcccEEEEeC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT----LAGVWITTGSAPVLRRNRIHSGKQVGVYFYDN 97 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~----~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~ 97 (137)
-+.+....+.+|++-++.+....-+.+......++++-.|.... .+||.+....+.+|++|.|... +.+|.+...
T Consensus 94 ~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~ 172 (326)
T PF00295_consen 94 LIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSG 172 (326)
T ss_dssp SEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-SESEEESSE
T ss_pred eeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-cCccccccc
Confidence 35554445678888899998888898887777888999998643 4799999888999999999776 679999866
Q ss_pred C-eeEEEccEEEccccCcEEEecCC---------CeEEeceEEecC
Q psy683 98 G-HGKLEDNDIFNHLYSGVQISNET---------TATLDACGLRRS 133 (137)
Q Consensus 98 ~-~g~ie~n~I~~n~~~Gi~v~~~a---------~p~l~~n~I~~~ 133 (137)
. .-++++|.+.. ..|+.+.... +.++++|++.++
T Consensus 173 ~~ni~v~n~~~~~--ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t 216 (326)
T PF00295_consen 173 SGNILVENCTCSG--GHGISIGSEGSGGSQNDIRNVTFENCTIINT 216 (326)
T ss_dssp ECEEEEESEEEES--SSEEEEEEESSSSE--EEEEEEEEEEEEESE
T ss_pred ccceEEEeEEEec--cccceeeeccCCccccEEEeEEEEEEEeecc
Confidence 6 66788888864 4578876322 335555555543
No 43
>PLN02480 Probable pectinesterase
Probab=95.15 E-value=1.4 Score=35.63 Aligned_cols=83 Identities=8% Similarity=0.001 Sum_probs=59.8
Q ss_pred cEEEEeCceeEEEeeEEEeCC---------cCcEEEc-cCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCc
Q psy683 45 GVYVHEKGVGLIEENEVYANT---------LAGVWIT-TGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSG 114 (137)
Q Consensus 45 GI~v~~~~~~~i~~n~I~~n~---------~~Gv~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~G 114 (137)
..+......-++++..|.+.. ..+|.+. .+.+..+.+|++...++. +| ...++-.+.+|.|.++..
T Consensus 125 aTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT-Ly-~~~gR~yf~~C~IeG~VD-- 200 (343)
T PLN02480 125 ATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT-LF-DYKGRHYYHSCYIQGSID-- 200 (343)
T ss_pred eEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce-eE-eCCCCEEEEeCEEEeeee--
Confidence 333333334466777777663 2467775 466778999999999864 55 567899999999999975
Q ss_pred EEEecCCCeEEeceEEec
Q psy683 115 VQISNETTATLDACGLRR 132 (137)
Q Consensus 115 i~v~~~a~p~l~~n~I~~ 132 (137)
+|...+...+.+|+|+-
T Consensus 201 -FIFG~g~a~fe~C~i~s 217 (343)
T PLN02480 201 -FIFGRGRSIFHNCEIFV 217 (343)
T ss_pred -EEccceeEEEEccEEEE
Confidence 34567888999999874
No 44
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.03 E-value=0.56 Score=38.39 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=74.1
Q ss_pred ceEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEE
Q psy683 6 GKAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 85 (137)
Q Consensus 6 g~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~ 85 (137)
-.-+|-+|.+.+-....|.. .+...+++|....+- -||.-.+.++..+.+|.+..... || ..++...|++|...
T Consensus 145 t~~~~hgC~F~gf~g~cl~~--~~~~~VrGC~F~~C~-~gi~~~~~~~lsVk~C~FekC~i-gi--~s~G~~~i~hn~~~ 218 (386)
T PF01696_consen 145 TNTLFHGCSFFGFHGTCLES--WAGGEVRGCTFYGCW-KGIVSRGKSKLSVKKCVFEKCVI-GI--VSEGPARIRHNCAS 218 (386)
T ss_pred ceEEEEeeEEecCcceeEEE--cCCcEEeeeEEEEEE-EEeecCCcceEEeeheeeeheEE-EE--EecCCeEEecceec
Confidence 34567789999976555555 477889999998877 77776666677777777766632 66 44788899999998
Q ss_pred cCCcccEEEEeCCeeEEEccEEEcccc
Q psy683 86 SGKQVGVYFYDNGHGKLEDNDIFNHLY 112 (137)
Q Consensus 86 ~~~~~GI~v~~~~~g~ie~n~I~~n~~ 112 (137)
++. -++.-++.|.+.+|.|-+...
T Consensus 219 ec~---Cf~l~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 219 ECG---CFVLMKGTGSIKHNMVCGPND 242 (386)
T ss_pred ccc---eEEEEcccEEEeccEEeCCCC
Confidence 874 566677889999999997654
No 45
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.58 E-value=0.84 Score=33.87 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=64.8
Q ss_pred CccCCEEEecCCCcEEeccEEEcC--------CCCcEEEEeCce-eEEEeeEEEeCCcCcEEEccC--------CccEEE
Q psy683 18 NALAGIQIRTSSDPIVRHNKIHHG--------QHGGVYVHEKGV-GLIEENEVYANTLAGVWITTG--------SAPVLR 80 (137)
Q Consensus 18 ~~~~GI~v~~~a~~~i~~n~I~~~--------~~~GI~v~~~~~-~~i~~n~I~~n~~~Gv~v~~~--------a~~~i~ 80 (137)
....+|.+....+.-|.+|++... ...-+.+...+. .+|..|.+.+.... ..+... .+.++-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~-~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT-MLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET-CEESSCTTCGGGTTEEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc-cccCCCCCccccCCceEEEE
Confidence 366788887666788888888887 655566665444 46777777765442 323221 245666
Q ss_pred eeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceE
Q psy683 81 RNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACG 129 (137)
Q Consensus 81 ~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~ 129 (137)
+|....+..-.=.+ ..+..-+-+|-+++....++.+..++...+++|-
T Consensus 152 hN~f~~~~~R~P~~-r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~ 199 (200)
T PF00544_consen 152 HNYFANTNSRNPRV-RFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNY 199 (200)
T ss_dssp S-EEEEEEE-TTEE-CSCEEEEES-EEEEECSESEEEETTEEEEEES-E
T ss_pred eEEECchhhCCCcc-cccEEEEEEeeeECCCCEEEEccCCeEEEEECcC
Confidence 66665543222222 2345567778778888888888888888777764
No 46
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=92.95 E-value=2.2 Score=35.40 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=51.2
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEE-----------eCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCC-
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVH-----------EKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGK- 88 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~-----------~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~- 88 (137)
+|.++ .+.+..|.+|++.+.+ .=+++. ..++-.+.+|.|.+.-. +|-..+...+.+|+|+.-.
T Consensus 230 AVALrv~GDra~fy~C~flG~Q-DTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VD---FIFG~g~AvFenC~I~s~~~ 305 (422)
T PRK10531 230 AVALRTDGDKVQIENVNILGRQ-DTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVD---FVFGRGAVVFDNTEFRVVNS 305 (422)
T ss_pred eEEEEEcCCcEEEEeeEEeccc-ceeeeccccccccccccccccEEEEeCEEeeccc---EEccCceEEEEcCEEEEecC
Confidence 45555 3457777777777554 444442 23356677777766543 2445666677777776632
Q ss_pred ---cccEEEEeC------CeeEEEccEEEccccCcEEEe
Q psy683 89 ---QVGVYFYDN------GHGKLEDNDIFNHLYSGVQIS 118 (137)
Q Consensus 89 ---~~GI~v~~~------~~g~ie~n~I~~n~~~Gi~v~ 118 (137)
..|.....+ -.=+|.+|+|......-+++.
T Consensus 306 ~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~g~~~~yLG 344 (422)
T PRK10531 306 RTQQEAYVFAPATLPNIYYGFLAINSRFNASGDGVAQLG 344 (422)
T ss_pred CCCCceEEEecCCCCCCCCEEEEECCEEecCCCCCeecc
Confidence 123332221 123578888887543344443
No 47
>smart00656 Amb_all Amb_all domain.
Probab=92.58 E-value=3.1 Score=30.55 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=72.2
Q ss_pred CCEEEecCCCcEEeccEEEcCC------CCcEEEEeCceeEEEeeEEEeCC--------cCcE-EEcc-CCccEEEeeEE
Q psy683 21 AGIQIRTSSDPIVRHNKIHHGQ------HGGVYVHEKGVGLIEENEVYANT--------LAGV-WITT-GSAPVLRRNRI 84 (137)
Q Consensus 21 ~GI~v~~~a~~~i~~n~I~~~~------~~GI~v~~~~~~~i~~n~I~~n~--------~~Gv-~v~~-~a~~~i~~n~I 84 (137)
.|+.+....+..|++-+|++.. ..+|.+.+.....|.+|+++.-. ..|+ .+.. ....++..|.+
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 4566765568888999998753 36888877777889999999852 3444 4443 46678899988
Q ss_pred EcCCcccEEEEeCC--------eeEEEccEEEccccCcEEEecCCCeEEeceEEe
Q psy683 85 HSGKQVGVYFYDNG--------HGKLEDNDIFNHLYSGVQISNETTATLDACGLR 131 (137)
Q Consensus 85 ~~~~~~GI~v~~~~--------~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~ 131 (137)
.+-. .+.++..+. +.++.+|.+..+..-.-.+..+ ...+..|-+.
T Consensus 112 ~~h~-~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g-~~hv~NN~~~ 164 (190)
T smart00656 112 HNHW-KVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFG-YVHVYNNYYT 164 (190)
T ss_pred ecCC-EEEEEccCCCccccccceEEEECcEEcCcccCCCcccCC-EEEEEeeEEe
Confidence 7654 566665432 5788898887765544444322 4455555443
No 48
>PLN02773 pectinesterase
Probab=92.46 E-value=3.9 Score=32.70 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
++.++ .+.+..+.+|++.+.+ .=++. ..++-.+++|.|.++-. +|-..+...+.+|+|+.
T Consensus 122 AvAl~v~gDr~~f~~c~~~G~Q-DTL~~-~~gr~yf~~c~IeG~VD---FIFG~g~a~Fe~c~i~s 182 (317)
T PLN02773 122 AVAIRVTADRCAFYNCRFLGWQ-DTLYL-HYGKQYLRDCYIEGSVD---FIFGNSTALLEHCHIHC 182 (317)
T ss_pred EEEEEecCccEEEEccEeeccc-ceeEe-CCCCEEEEeeEEeeccc---EEeeccEEEEEeeEEEE
Confidence 34444 2345566666665433 22332 23445555555555432 13344555555555554
No 49
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=92.23 E-value=0.28 Score=23.11 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=7.8
Q ss_pred cEEeccEEEcCCCCcEEE
Q psy683 31 PIVRHNKIHHGQHGGVYV 48 (137)
Q Consensus 31 ~~i~~n~I~~~~~~GI~v 48 (137)
++|++|+|+++...||++
T Consensus 4 ~~i~~n~i~~~~~~Gi~i 21 (26)
T smart00710 4 VTIENNTIRNNGGDGIYI 21 (26)
T ss_pred EEEECCEEEeCCCCcEEE
Confidence 344444444444334443
No 50
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=91.64 E-value=4.9 Score=31.41 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=22.7
Q ss_pred EccEEEccccCcEEEe-cCCCeEEeceEEecCcCC
Q psy683 103 EDNDIFNHLYSGVQIS-NETTATLDACGLRRSMPI 136 (137)
Q Consensus 103 e~n~I~~n~~~Gi~v~-~~a~p~l~~n~I~~~~~~ 136 (137)
|+-+|+++.-.|=++. .+-+.+|.+|+|...||+
T Consensus 175 eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpL 209 (277)
T PF12541_consen 175 ENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPL 209 (277)
T ss_pred CceEEEcceEeeeEEEEEcCCeEEEEeEEeccCcc
Confidence 3444555555555543 455679999999999985
No 51
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=91.63 E-value=1.8 Score=37.02 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=71.3
Q ss_pred CEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCc---CcEEEccCCccEEEeeEEEcCCcccEEEEeCC
Q psy683 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTL---AGVWITTGSAPVLRRNRIHSGKQVGVYFYDNG 98 (137)
Q Consensus 22 GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~---~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~ 98 (137)
-+.+....+..+.+-+|......++........++++-+|..+.. +|+.+...++..|.+|+|... +..|.+..++
T Consensus 240 ~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg-DD~I~iksg~ 318 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTG-DDCIAIKSGA 318 (542)
T ss_pred eEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecC-CceEEeeccc
Confidence 355556778888899998888889988888888887777766543 699999899999999998885 5788887655
Q ss_pred ee------------EEEccEEEccccCcEEEec
Q psy683 99 HG------------KLEDNDIFNHLYSGVQISN 119 (137)
Q Consensus 99 ~g------------~ie~n~I~~n~~~Gi~v~~ 119 (137)
.. ++.+|.+. .+..++.+..
T Consensus 319 ~~~~~~~~~~~~~i~i~~c~~~-~ghG~~v~Gs 350 (542)
T COG5434 319 GLDGKKGYGPSRNIVIRNCYFS-SGHGGLVLGS 350 (542)
T ss_pred CCcccccccccccEEEecceec-ccccceEeee
Confidence 43 47778777 3333555533
No 52
>PRK09752 adhesin; Provisional
Probab=91.49 E-value=11 Score=35.22 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=63.1
Q ss_pred cceEEEEeeEEEc--CccCCEEEecCCCcEEeccEEEcCCC---Cc-EEEEeCc-----eeEEEeeEEEeCCc----Cc-
Q psy683 5 KGKAQVLMMVHCG--NALAGIQIRTSSDPIVRHNKIHHGQH---GG-VYVHEKG-----VGLIEENEVYANTL----AG- 68 (137)
Q Consensus 5 ~g~g~i~~c~I~~--~~~~GI~v~~~a~~~i~~n~I~~~~~---~G-I~v~~~~-----~~~i~~n~I~~n~~----~G- 68 (137)
.+.-.|.+|.+.+ +..-+|+........+.++.+..|.. .| |+..+.. .-.|.++.+..|.. .|
T Consensus 95 ~~~t~F~nNtasG~~~sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGA 174 (1250)
T PRK09752 95 TGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGA 174 (1250)
T ss_pred ccceEeecceecCCcCCccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCE
Confidence 3445666777765 33334555444455666666666542 12 3332210 13466666666632 12
Q ss_pred EEEccCCccEEEeeEEEcCC-----------cccEEEEeCC--------eeEEEccEEEcccc----CcEEEecCCCeEE
Q psy683 69 VWITTGSAPVLRRNRIHSGK-----------QVGVYFYDNG--------HGKLEDNDIFNHLY----SGVQISNETTATL 125 (137)
Q Consensus 69 v~v~~~a~~~i~~n~I~~~~-----------~~GI~v~~~~--------~g~ie~n~I~~n~~----~Gi~v~~~a~p~l 125 (137)
|+. ..++..|.++.+.+|. +-.||+.... .-++.+|.|.+|.. .+|+......|.+
T Consensus 175 IYs-~ng~vtIsnS~F~nN~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNsA~~~GGAIY~~s~t~p~~ 253 (1250)
T PRK09752 175 IYT-INNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYL 253 (1250)
T ss_pred EEE-ccCcEEEEeeEEeCCcccccccccCCCceEEEeccCCCccccccceEEEeccEEEccccCCcceEEEecCCCCceE
Confidence 443 3566777777777665 2345554322 33466777777732 3566655555554
No 53
>PLN02665 pectinesterase family protein
Probab=90.93 E-value=4.4 Score=33.07 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=21.6
Q ss_pred CCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 29 SDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 29 a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
.+..+.+|++.+.+. =++ ...++-.+.+|.|.++-. +|-..+...+.+|+|+.
T Consensus 187 Dka~f~~C~f~G~QD-TL~-~~~gr~yf~~CyIeG~VD---FIFG~g~a~fe~C~i~s 239 (366)
T PLN02665 187 DKAAFYNCRFIGFQD-TLC-DDKGRHFFKDCYIEGTVD---FIFGSGKSLYLNTELHV 239 (366)
T ss_pred CcEEEEcceeccccc-eeE-eCCCCEEEEeeEEeeccc---eeccccceeeEccEEEE
Confidence 345555555544332 122 123344444444444322 12233444444444443
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=90.80 E-value=6.9 Score=30.92 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=24.5
Q ss_pred eEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeC
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYAN 64 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n 64 (137)
+..|.+|.|.+. ..-+++. ..+--+++|.|.+.- =++++.+..++++|+|...
T Consensus 116 ~~~f~~c~~~g~-QDTL~~~-~~r~y~~~c~IeG~v---DFIfG~~~a~f~~c~i~~~ 168 (298)
T PF01095_consen 116 RAAFYNCRFLGY-QDTLYAN-GGRQYFKNCYIEGNV---DFIFGNGTAVFENCTIHSR 168 (298)
T ss_dssp SEEEEEEEEE-S-TT-EEE--SSEEEEES-EEEESE---EEEEESSEEEEES-EEEE-
T ss_pred cEEEEEeEEccc-cceeeec-cceeEEEeeEEEecC---cEEECCeeEEeeeeEEEEe
Confidence 345556666554 2344442 334555556665432 2455566666666666553
No 55
>PLN02682 pectinesterase family protein
Probab=90.16 E-value=7.2 Score=31.89 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=8.1
Q ss_pred EEEeCceeEEEeeEEEe
Q psy683 47 YVHEKGVGLIEENEVYA 63 (137)
Q Consensus 47 ~v~~~~~~~i~~n~I~~ 63 (137)
+|++.++.++++|+|+.
T Consensus 232 FIFG~g~a~Fe~C~I~s 248 (369)
T PLN02682 232 FIFGNGLSLYEGCHLHA 248 (369)
T ss_pred EEecCceEEEEccEEEE
Confidence 34444455555555543
No 56
>PLN02671 pectinesterase
Probab=89.94 E-value=7.8 Score=31.59 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=24.1
Q ss_pred CCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 28 SSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 28 ~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+.+..+.+|++.+.+ .=++ ...++-.+++|.|.++-. +|-..+...+.+|+|+.
T Consensus 185 gDra~f~~c~f~G~Q-DTLy-~~~gR~yf~~CyIeG~VD---FIFG~g~A~Fe~C~I~s 238 (359)
T PLN02671 185 GDKAFFYKVRVLGAQ-DTLL-DETGSHYFYQCYIQGSVD---FIFGNAKSLYQDCVIQS 238 (359)
T ss_pred CccEEEEcceEeccc-cccE-eCCCcEEEEecEEEEecc---EEecceeEEEeccEEEE
Confidence 345566666665443 2222 123344455555544422 12234444555555543
No 57
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=89.55 E-value=7.3 Score=33.52 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=21.3
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEE
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 85 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~ 85 (137)
+..|.+|+|.+-+ .=+|+. .++-.+++|.|+++-. +|-.++..++.+|.|+
T Consensus 359 ~~~f~~c~~~G~Q-DTLy~~-~~rq~y~~C~I~GtVD---FIFG~a~avfq~c~i~ 409 (553)
T PLN02708 359 LSVIENCEFLGNQ-DTLYAH-SLRQFYKSCRIQGNVD---FIFGNSAAVFQDCAIL 409 (553)
T ss_pred cEEEEeeeeeecc-ccceeC-CCceEEEeeEEeecCC---EEecCceEEEEccEEE
Confidence 4455555554433 223321 2333444555544422 1233444444444444
No 58
>PLN02665 pectinesterase family protein
Probab=88.43 E-value=12 Score=30.49 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=30.4
Q ss_pred eEEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCC
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT 65 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~ 65 (137)
+..|.+|+|.+.. .-++. ...+-.+++|.|.+.- =++++.++.++|+|+|+...
T Consensus 188 ka~f~~C~f~G~Q-DTL~~-~~gr~yf~~CyIeG~V---DFIFG~g~a~fe~C~i~s~~ 241 (366)
T PLN02665 188 KAAFYNCRFIGFQ-DTLCD-DKGRHFFKDCYIEGTV---DFIFGSGKSLYLNTELHVVG 241 (366)
T ss_pred cEEEEcceecccc-ceeEe-CCCCEEEEeeEEeecc---ceeccccceeeEccEEEEec
Confidence 3456666666643 33443 3455666666666543 24556666666666666543
No 59
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=88.37 E-value=14 Score=30.87 Aligned_cols=102 Identities=7% Similarity=0.053 Sum_probs=68.5
Q ss_pred cCCCcEEeccEEEcCCC--------CcEEEEe-CceeEEEeeEEEeCCcCcEEEc-----------cCCccEEEeeEEEc
Q psy683 27 TSSDPIVRHNKIHHGQH--------GGVYVHE-KGVGLIEENEVYANTLAGVWIT-----------TGSAPVLRRNRIHS 86 (137)
Q Consensus 27 ~~a~~~i~~n~I~~~~~--------~GI~v~~-~~~~~i~~n~I~~n~~~Gv~v~-----------~~a~~~i~~n~I~~ 86 (137)
....-.+++-+|.+... ..|.+.- .-+..+.+|+|.+... =+++. ...+-..++|.|..
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD-TLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD-TFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc-eeeeccccccccccccccccEEEEeCEEee
Confidence 45567777777776532 3444443 3467899999998754 46652 23467889999988
Q ss_pred CCcccEEEEeCCeeEEEccEEEcccc---CcEEEecCC-------CeEEeceEEec
Q psy683 87 GKQVGVYFYDNGHGKLEDNDIFNHLY---SGVQISNET-------TATLDACGLRR 132 (137)
Q Consensus 87 ~~~~GI~v~~~~~g~ie~n~I~~n~~---~Gi~v~~~a-------~p~l~~n~I~~ 132 (137)
.-+ ||.+.+..+|++|+|+-... ..-+|...+ .-++.+|+|..
T Consensus 283 ~VD---FIFG~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~ 335 (422)
T PRK10531 283 DVD---FVFGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNA 335 (422)
T ss_pred ccc---EEccCceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEec
Confidence 755 67788999999999988532 223443322 23889999876
No 60
>PLN02634 probable pectinesterase
Probab=88.23 E-value=11 Score=30.76 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=2.5
Q ss_pred EEEccEE
Q psy683 101 KLEDNDI 107 (137)
Q Consensus 101 ~ie~n~I 107 (137)
++|+|+|
T Consensus 226 ~Fe~C~I 232 (359)
T PLN02634 226 MYKDCEL 232 (359)
T ss_pred EEeccEE
Confidence 3333333
No 61
>PLN02916 pectinesterase family protein
Probab=87.75 E-value=6.8 Score=33.32 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=21.3
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+..+.+|++.+.+ .=+|.. .++-.+++|.|+++-. +|-.++...+.+|.|+.
T Consensus 306 ~a~fy~C~f~G~Q-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avFq~C~I~~ 357 (502)
T PLN02916 306 LSVFYRCSFKGYQ-DTLFVH-SLRQFYRDCHIYGTID---FIFGDAAVVFQNCDIFV 357 (502)
T ss_pred cEEEEeeeEeccC-ceeEeC-CCCEEEEecEEecccc---eeccCceEEEecCEEEE
Confidence 4455555554433 222221 2333444444444322 12334444444444443
No 62
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=87.64 E-value=9.5 Score=28.22 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred CCEEEe-cCCCcEEeccEEEc---------------CCCCcEEEEeCceeEEEeeEEEeC--------CcCcEEEccC-C
Q psy683 21 AGIQIR-TSSDPIVRHNKIHH---------------GQHGGVYVHEKGVGLIEENEVYAN--------TLAGVWITTG-S 75 (137)
Q Consensus 21 ~GI~v~-~~a~~~i~~n~I~~---------------~~~~GI~v~~~~~~~i~~n~I~~n--------~~~Gv~v~~~-a 75 (137)
.|+.+. ...+..|++-+|++ ....+|.+.+.....|.+|+++.. ...-+.+..+ .
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~ 116 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSD 116 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTE
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCc
Confidence 567776 55577777778777 355788888777788999999998 5555777654 5
Q ss_pred ccEEEeeEEEcCCcccEEEEeC--------CeeEEEccEEEccc
Q psy683 76 APVLRRNRIHSGKQVGVYFYDN--------GHGKLEDNDIFNHL 111 (137)
Q Consensus 76 ~~~i~~n~I~~~~~~GI~v~~~--------~~g~ie~n~I~~n~ 111 (137)
..++..|.+.+... +..+... .+-++.+|-+..+.
T Consensus 117 ~vTiS~n~f~~~~k-~~l~G~~d~~~~~~~~~vT~hhN~f~~~~ 159 (200)
T PF00544_consen 117 NVTISNNIFDNHNK-TMLIGSSDSNSTDRGLRVTFHHNYFANTN 159 (200)
T ss_dssp EEEEES-EEEEEEE-TCEESSCTTCGGGTTEEEEEES-EEEEEE
T ss_pred eEEEEchhcccccc-ccccCCCCCccccCCceEEEEeEEECchh
Confidence 66899998887644 3222211 15567777776554
No 63
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=87.09 E-value=5.6 Score=34.55 Aligned_cols=31 Identities=6% Similarity=0.207 Sum_probs=14.3
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
+-.+++|.|.+.-. ||++.+..++++|+|+.
T Consensus 422 Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~~ 452 (596)
T PLN02745 422 RQFYRSCVITGTID---FIFGDAAAIFQNCLIFV 452 (596)
T ss_pred cEEEEeeEEEeecc---EEecceeEEEEecEEEE
Confidence 34444444443331 44455555555555543
No 64
>PRK09752 adhesin; Provisional
Probab=87.00 E-value=27 Score=32.86 Aligned_cols=104 Identities=10% Similarity=0.165 Sum_probs=59.7
Q ss_pred CcEEeccEEEc--CCCCcEEEEeCceeEEEeeEEEeCCc---Cc-EEEccCC-----ccEEEeeEEEcCCc-----ccEE
Q psy683 30 DPIVRHNKIHH--GQHGGVYVHEKGVGLIEENEVYANTL---AG-VWITTGS-----APVLRRNRIHSGKQ-----VGVY 93 (137)
Q Consensus 30 ~~~i~~n~I~~--~~~~GI~v~~~~~~~i~~n~I~~n~~---~G-v~v~~~a-----~~~i~~n~I~~~~~-----~GI~ 93 (137)
...|.+|++.+ +.+..||......-.+.++.+..|.- .| |+..... ...|.++.+..|.. -+||
T Consensus 97 ~t~F~nNtasG~~~sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIY 176 (1250)
T PRK09752 97 MTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIY 176 (1250)
T ss_pred ceEeecceecCCcCCccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEE
Confidence 44556777775 23234544334456777888888753 23 4443211 25677777777753 2366
Q ss_pred EEeCCeeEEEccEEEccc-----------cCcEEEecCC--------CeEEeceEEecCc
Q psy683 94 FYDNGHGKLEDNDIFNHL-----------YSGVQISNET--------TATLDACGLRRSM 134 (137)
Q Consensus 94 v~~~~~g~ie~n~I~~n~-----------~~Gi~v~~~a--------~p~l~~n~I~~~~ 134 (137)
.. .+...+.+|.|.+|. ..+|++.... ...|..|.+.++.
T Consensus 177 s~-ng~vtIsnS~F~nN~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNs 235 (1250)
T PRK09752 177 TI-NNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNT 235 (1250)
T ss_pred Ec-cCcEEEEeeEEeCCcccccccccCCCceEEEeccCCCccccccceEEEeccEEEccc
Confidence 43 566778888888885 3456665322 2346667666653
No 65
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=86.48 E-value=7 Score=33.90 Aligned_cols=17 Identities=12% Similarity=0.477 Sum_probs=8.2
Q ss_pred EEEeCceeEEEeeEEEe
Q psy683 47 YVHEKGVGLIEENEVYA 63 (137)
Q Consensus 47 ~v~~~~~~~i~~n~I~~ 63 (137)
||++.+..++++|+|+.
T Consensus 424 FIFG~a~avfq~C~i~~ 440 (587)
T PLN02484 424 FIFGNAAVVLQNCSIYA 440 (587)
T ss_pred eecccceeEEeccEEEE
Confidence 34444555555555543
No 66
>PLN02773 pectinesterase
Probab=85.89 E-value=16 Score=29.21 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCCcEEeccEEEcCC----CCcEEEEe-CceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEE
Q psy683 28 SSDPIVRHNKIHHGQ----HGGVYVHE-KGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKL 102 (137)
Q Consensus 28 ~a~~~i~~n~I~~~~----~~GI~v~~-~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~i 102 (137)
...-.+++.+|.+.. +..+.+.- .-+..+.+|++.+... =++.. ..+-.+++|.|...-+ ||.+.+..+|
T Consensus 101 a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD-TL~~~-~gr~yf~~c~IeG~VD---FIFG~g~a~F 175 (317)
T PLN02773 101 GEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD-TLYLH-YGKQYLRDCYIEGSVD---FIFGNSTALL 175 (317)
T ss_pred CCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc-eeEeC-CCCEEEEeeEEeeccc---EEeeccEEEE
Confidence 345555666666542 23343333 3356778888877643 35543 3566778888877654 5668899999
Q ss_pred EccEEEccccCcEEEecC-------CCeEEeceEEecC
Q psy683 103 EDNDIFNHLYSGVQISNE-------TTATLDACGLRRS 133 (137)
Q Consensus 103 e~n~I~~n~~~Gi~v~~~-------a~p~l~~n~I~~~ 133 (137)
|+|+|+... .|.....+ ..-++.+|+|...
T Consensus 176 e~c~i~s~~-~g~ITA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 176 EHCHIHCKS-AGFITAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred EeeEEEEcc-CcEEECCCCCCCCCCceEEEEccEEecC
Confidence 999998654 45433221 1237888988764
No 67
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=85.78 E-value=11 Score=32.27 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=25.4
Q ss_pred CEEEec-CCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIRT-SSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~~-~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+|.++- +.+..|.+|++.+-+ .=+|.. .++-.+++|.|++.-. +|-.++..++.+|.|+.
T Consensus 333 AvAlrv~~D~~~f~~C~~~gyQ-DTLy~~-~~rq~y~~c~I~GtVD---FIFG~a~avfq~c~i~~ 393 (538)
T PLN03043 333 AVALRNNADLSTFYRCSFEGYQ-DTLYVH-SLRQFYRECDIYGTVD---FIFGNAAAIFQNCNLYA 393 (538)
T ss_pred eEEEEEcCCcEEEEeeEEeccC-cccccC-CCcEEEEeeEEeeccc---eEeecceeeeeccEEEE
Confidence 344442 234555555555433 222221 2334455555544422 12334444555555544
No 68
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=85.69 E-value=20 Score=30.74 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=24.4
Q ss_pred EEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 8 AQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 8 g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
..|.+|.|.+.. .-++. ...+--+++|.|.+.- =||++.+..++++|+|+.
T Consensus 323 ~~fy~C~f~G~Q-DTLy~-~~~Rqyy~~C~I~GtV---DFIFG~a~avf~~C~i~~ 373 (520)
T PLN02201 323 SVFYRCAMRGYQ-DTLYT-HTMRQFYRECRITGTV---DFIFGDATAVFQNCQILA 373 (520)
T ss_pred EEEEeeeeeccC-CeeEe-CCCCEEEEeeEEeecc---cEEecCceEEEEccEEEE
Confidence 344455555432 33333 2334455555555432 245555666666666654
No 69
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=85.45 E-value=6.8 Score=34.50 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=25.3
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+|.++ .+.+..|.+|++.+.+ .=+|.. .++-.+++|.|++.-. +|-.++...+.+|.|+.
T Consensus 357 AVAlrv~~Dra~fy~C~f~G~Q-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~I~~ 417 (670)
T PLN02217 357 AVAIRVLSDESIFYNCKFDGYQ-DTLYAH-SHRQFYRDCTISGTID---FLFGDAAAVFQNCTLLV 417 (670)
T ss_pred eEEEEecCCcEEEEcceeeecc-chhccC-CCcEEEEeCEEEEecc---EEecCceEEEEccEEEE
Confidence 34444 2335555555555433 222221 2334455555544421 12234444445555543
No 70
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=85.43 E-value=16 Score=28.81 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=24.2
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
+..+.+|.+.+... =++.. ..+-.+++|.|..+-+ ||.+.+..+|++|+|.-.
T Consensus 116 ~~~f~~c~~~g~QD-TL~~~-~~r~y~~~c~IeG~vD---FIfG~~~a~f~~c~i~~~ 168 (298)
T PF01095_consen 116 RAAFYNCRFLGYQD-TLYAN-GGRQYFKNCYIEGNVD---FIFGNGTAVFENCTIHSR 168 (298)
T ss_dssp SEEEEEEEEE-STT--EEE--SSEEEEES-EEEESEE---EEEESSEEEEES-EEEE-
T ss_pred cEEEEEeEEccccc-eeeec-cceeEEEeeEEEecCc---EEECCeeEEeeeeEEEEe
Confidence 34555665555432 34332 2344555555555432 445556666666666654
No 71
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=85.38 E-value=12 Score=31.91 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=32.0
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+|.++ .+.+..+.+|++.+.+ .=+|.. .++-.+++|.|++.-. +|-.++...+.+|.|+.
T Consensus 304 AVALrv~~Dra~Fy~C~f~GyQ-DTLy~~-~~RqyyrdC~I~GtVD---FIFG~a~avFq~C~I~s 364 (509)
T PLN02488 304 AVALRVSGDMSVIYRCRIEGYQ-DALYPH-RDRQFYRECFITGTVD---FICGNAAAVFQFCQIVA 364 (509)
T ss_pred eEEEEecCCcEEEEcceeeccC-cceeeC-CCCEEEEeeEEeeccc---eEecceEEEEEccEEEE
Confidence 45555 3346666667766544 333332 3445666666665533 13345566666666654
No 72
>PLN02432 putative pectinesterase
Probab=85.11 E-value=13 Score=29.42 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=21.6
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
.|.+|.|.+. ..-++. ...+..+++|.|.+.- =++++.+..++++|+|+.
T Consensus 124 ~f~~c~~~G~-QDTLy~-~~gr~yf~~c~I~G~V---DFIFG~g~a~Fe~c~i~s 173 (293)
T PLN02432 124 AFYGCRILSY-QDTLLD-DTGRHYYRNCYIEGAT---DFICGNAASLFEKCHLHS 173 (293)
T ss_pred EEEcceEecc-cceeEE-CCCCEEEEeCEEEecc---cEEecCceEEEEeeEEEE
Confidence 4444444443 223332 2334444444444322 134455555555555543
No 73
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=84.43 E-value=15 Score=31.52 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=24.6
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+|.++ .+.+..+.+|++.+.+ .=+|.. .++-.+++|.|+++-. +|-.++...+.+|.|+.
T Consensus 332 AVAlrv~~Dr~~f~~c~~~G~Q-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~~ 392 (539)
T PLN02995 332 AVALRSSSDLSIFYKCSIEGYQ-DTLMVH-SQRQFYRECYIYGTVD---FIFGNAAAVFQNCIILP 392 (539)
T ss_pred eEEEEEcCCceeEEcceEeccc-chhccC-CCceEEEeeEEeeccc---eEecccceEEeccEEEE
Confidence 34444 2335555555555443 222221 2233444444444321 12334444444444443
No 74
>PLN02634 probable pectinesterase
Probab=84.27 E-value=21 Score=29.12 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=57.6
Q ss_pred CCEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCC-cccEEEEeC-
Q psy683 21 AGIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGK-QVGVYFYDN- 97 (137)
Q Consensus 21 ~GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~-~~GI~v~~~- 97 (137)
.+|.++ .+.+..+.+|++.+.+. =++ ...++-.+.+|.|.++-. +|-..+...+.+|+|+... ..|.....+
T Consensus 173 QAVAl~v~gDra~f~~C~f~G~QD-TL~-~~~gR~yf~~CyIeG~VD---FIFG~g~a~Fe~C~I~s~~~~~g~ITA~~R 247 (359)
T PLN02634 173 QAVAFRISGDKAFFFGCGFYGAQD-TLC-DDAGRHYFKECYIEGSID---FIFGNGRSMYKDCELHSIASRFGSIAAHGR 247 (359)
T ss_pred ceEEEEecCCcEEEEEeEEecccc-eee-eCCCCEEEEeeEEccccc---EEcCCceEEEeccEEEEecCCCcEEEeCCC
Confidence 345555 34567777777776553 243 245666777888766543 2445677778888887643 234333221
Q ss_pred ------CeeEEEccEEEccccCcEEEec----CCCeEEeceEE
Q psy683 98 ------GHGKLEDNDIFNHLYSGVQISN----ETTATLDACGL 130 (137)
Q Consensus 98 ------~~g~ie~n~I~~n~~~Gi~v~~----~a~p~l~~n~I 130 (137)
..=+|.+|+|.+.. -+++.. .++.++.+|.+
T Consensus 248 ~~~~~~~GfvF~~C~vtg~g--~~yLGRPW~~yarvVf~~t~l 288 (359)
T PLN02634 248 TCPEEKTGFAFVGCRVTGTG--PLYVGRAMGQYSRIVYAYTYF 288 (359)
T ss_pred CCCCCCcEEEEEcCEEcCCc--ceEecCCCCCcceEEEEeccc
Confidence 12257788887643 344442 33445554444
No 75
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=84.13 E-value=21 Score=30.66 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=23.3
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
.|.+|.|.+.. .-+++ ...+-.+++|.|.+.- =||++.+..++++|+|+.
T Consensus 336 ~fy~C~f~G~Q-DTLy~-~~~Rqyy~~C~IeGtV---DFIFG~a~avFq~C~i~~ 385 (530)
T PLN02933 336 AFYRCEFDGYQ-DTLYV-HSAKQFYRECDIYGTI---DFIFGNAAVVFQNCSLYA 385 (530)
T ss_pred EEEEeEEEecc-ccccc-CCCceEEEeeEEeccc---ceeccCceEEEeccEEEE
Confidence 44455554432 23333 2234455555555433 144555555566665554
No 76
>PLN02682 pectinesterase family protein
Probab=83.96 E-value=22 Score=29.11 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=14.6
Q ss_pred ccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEc
Q psy683 76 APVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFN 109 (137)
Q Consensus 76 ~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~ 109 (137)
+-..++|.|..+-+ ||.+.+..++|+|+|+.
T Consensus 218 Rqyf~~C~IeG~VD---FIFG~g~a~Fe~C~I~s 248 (369)
T PLN02682 218 RHYFKDCYIEGSVD---FIFGNGLSLYEGCHLHA 248 (369)
T ss_pred CEEEEeeEEccccc---EEecCceEEEEccEEEE
Confidence 34444444444332 34444555555555543
No 77
>PLN02314 pectinesterase
Probab=83.59 E-value=12 Score=32.52 Aligned_cols=31 Identities=6% Similarity=0.123 Sum_probs=14.6
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
+--+++|.|.+.- =||++.+..++++|+|+.
T Consensus 415 rq~y~~C~I~Gtv---DFIFG~a~avf~~c~i~~ 445 (586)
T PLN02314 415 RQFYRDCDITGTI---DFIFGNAAVVFQNCNIQP 445 (586)
T ss_pred CEEEEeeEEEecc---ceeccCceeeeeccEEEE
Confidence 3444444444322 134455555555555544
No 78
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.35 E-value=8.9 Score=32.59 Aligned_cols=17 Identities=0% Similarity=0.311 Sum_probs=8.3
Q ss_pred EEEeCceeEEEeeEEEe
Q psy683 47 YVHEKGVGLIEENEVYA 63 (137)
Q Consensus 47 ~v~~~~~~~i~~n~I~~ 63 (137)
||++.+..++++|+|+.
T Consensus 334 FIFG~a~avf~~C~i~~ 350 (497)
T PLN02698 334 FIFGNAAAVFQNCYLFL 350 (497)
T ss_pred eEecccceeecccEEEE
Confidence 34445555555555543
No 79
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=82.87 E-value=15 Score=31.88 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=24.7
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEE
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 85 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~ 85 (137)
+|.++ .+.+..+.+|++.+.+ .=+|.. .++-.+++|.|++.-. +|-.++...+.+|.|+
T Consensus 367 AVAlrv~~D~~~f~~c~~~G~Q-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~ 426 (572)
T PLN02990 367 AVALRVSADYAVFYNCQIDGYQ-DTLYVH-SHRQFFRDCTVSGTVD---FIFGDAKVVLQNCNIV 426 (572)
T ss_pred eEEEEEcCCcEEEEeeeEeccc-chhccC-CCcEEEEeeEEecccc---eEccCceEEEEccEEE
Confidence 34444 2335555555555433 222221 2334445555544322 1233444444455444
No 80
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=82.81 E-value=30 Score=29.78 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=24.2
Q ss_pred EEEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 8 AQVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 8 g~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
..|.+|.|.+.. .-++. ...+-.+++|.|.+.- =||++.+..++++|+|+.
T Consensus 342 ~~f~~c~~~G~Q-DTLy~-~~~Rqyy~~C~I~GtV---DFIFG~a~avf~~C~i~~ 392 (539)
T PLN02995 342 SIFYKCSIEGYQ-DTLMV-HSQRQFYRECYIYGTV---DFIFGNAAAVFQNCIILP 392 (539)
T ss_pred eeEEcceEeccc-chhcc-CCCceEEEeeEEeecc---ceEecccceEEeccEEEE
Confidence 345555555532 33433 2334455555555432 244455555555555554
No 81
>PLN02176 putative pectinesterase
Probab=82.22 E-value=25 Score=28.46 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=20.7
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEE
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 85 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~ 85 (137)
+..+.+|++.+.+. =++. ..++-.+.+|.|.++-. .|-..+...+.+|+|+
T Consensus 157 r~~f~~C~f~G~QD-TLy~-~~gRqyf~~CyIeG~VD---FIFG~a~a~Fe~C~I~ 207 (340)
T PLN02176 157 KYAIIDSSFDGFQD-TLFD-GKGRHYYKRCVISGGID---FIFGYAQSIFEGCTLK 207 (340)
T ss_pred cEEEEccEEecccc-eeEe-CCcCEEEEecEEEeccc---EEecCceEEEeccEEE
Confidence 44455555544331 1221 23344444444444322 1223344444444444
No 82
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=81.43 E-value=31 Score=29.65 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=8.3
Q ss_pred EEEeCceeEEEeeEEEe
Q psy683 47 YVHEKGVGLIEENEVYA 63 (137)
Q Consensus 47 ~v~~~~~~~i~~n~I~~ 63 (137)
+|++.++.++++|+|+.
T Consensus 377 FIFG~a~avFq~C~I~~ 393 (529)
T PLN02170 377 FIFGNSAVVFQSCNIAA 393 (529)
T ss_pred eecccceEEEeccEEEE
Confidence 34444555555555544
No 83
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=81.21 E-value=25 Score=30.23 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=24.8
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+|.++ .+.+..+.+|++.+-+ .=+|. ..++-.+++|.|+++-. +|-.++...+.+|.|+.
T Consensus 339 AVAl~v~~D~~~fy~C~~~G~Q-DTLy~-~~~rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~~ 399 (537)
T PLN02506 339 AVALRVDSDQSAFYRCSMEGYQ-DTLYA-HSLRQFYRECEIYGTID---FIFGNGAAVLQNCKIYT 399 (537)
T ss_pred eEEEEecCCcEEEEcceeeccc-cccee-cCCceEEEeeEEecccc---eEccCceeEEeccEEEE
Confidence 34444 2335555555554433 22222 12333445555544322 13334444444444443
No 84
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=80.99 E-value=31 Score=29.84 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=21.8
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+..+.+|++.+.+ .=+|.. .++-.+++|.|++.-. +|-.++...+.+|.|+.
T Consensus 369 ~~~fy~C~~~G~Q-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~~ 420 (566)
T PLN02713 369 LSTFYSCSFEAYQ-DTLYTH-SLRQFYRECDIYGTVD---FIFGNAAVVFQNCNLYP 420 (566)
T ss_pred cEEEEeeeeccCC-cceEEC-CCCEEEEeeEEecccc---eecccceEEEeccEEEE
Confidence 4455555554433 223322 2333455555544322 12334444444454443
No 85
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=80.97 E-value=27 Score=28.05 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=50.2
Q ss_pred CCEEEecCCCcEEeccEEEcCC-----CCcEEEEeCcee-EEEeeEEEeCC-------cCc-EEEccCCcc-EEEeeEEE
Q psy683 21 AGIQIRTSSDPIVRHNKIHHGQ-----HGGVYVHEKGVG-LIEENEVYANT-------LAG-VWITTGSAP-VLRRNRIH 85 (137)
Q Consensus 21 ~GI~v~~~a~~~i~~n~I~~~~-----~~GI~v~~~~~~-~i~~n~I~~n~-------~~G-v~v~~~a~~-~i~~n~I~ 85 (137)
-|+.++...+..||+-+|++.. ...|.+++.++- .|.+|+++.-. ++| +.|..+|+- ++..|+++
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fh 196 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFH 196 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeee
Confidence 4666777667888888888755 367888776665 48888888722 233 566665554 78888888
Q ss_pred cCCcccEEEE
Q psy683 86 SGKQVGVYFY 95 (137)
Q Consensus 86 ~~~~~GI~v~ 95 (137)
+... +..+.
T Consensus 197 dh~K-ssl~G 205 (345)
T COG3866 197 DHDK-SSLLG 205 (345)
T ss_pred cCCe-eeeec
Confidence 8753 55554
No 86
>PLN02304 probable pectinesterase
Probab=80.90 E-value=30 Score=28.47 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=6.4
Q ss_pred CcEEeccEEEcCC
Q psy683 30 DPIVRHNKIHHGQ 42 (137)
Q Consensus 30 ~~~i~~n~I~~~~ 42 (137)
+..+.+|++.+.+
T Consensus 196 ra~fy~C~f~G~Q 208 (379)
T PLN02304 196 QAAFWGCGFFGAQ 208 (379)
T ss_pred cEEEEeceEeccc
Confidence 4455555554433
No 87
>PLN02432 putative pectinesterase
Probab=80.16 E-value=28 Score=27.61 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=24.2
Q ss_pred CCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 29 SDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 29 a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
.+..+.+|++.+.+ .=++ ...++-.+++|.|.++-. +|-..+...+.+|+|+.
T Consensus 121 Dr~~f~~c~~~G~Q-DTLy-~~~gr~yf~~c~I~G~VD---FIFG~g~a~Fe~c~i~s 173 (293)
T PLN02432 121 DRAAFYGCRILSYQ-DTLL-DDTGRHYYRNCYIEGATD---FICGNAASLFEKCHLHS 173 (293)
T ss_pred CcEEEEcceEeccc-ceeE-ECCCCEEEEeCEEEeccc---EEecCceEEEEeeEEEE
Confidence 35555555555433 2222 223444555555555422 13344555555555553
No 88
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=80.01 E-value=14 Score=31.76 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=21.9
Q ss_pred CcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 30 DPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 30 ~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+..+.+|++.+-+ .=+|.. .++-.+.+|.|++.-. +|-.++...+.+|+|+.
T Consensus 352 ~~~fy~C~~~G~Q-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~c~i~~ 403 (548)
T PLN02301 352 QAVINRCRIDAYQ-DTLYAH-SLRQFYRDSYITGTVD---FIFGNAAVVFQNCKIVA 403 (548)
T ss_pred cEEEEeeeeeecc-ccceec-CCcEEEEeeEEEeccc---eecccceeEEeccEEEE
Confidence 4555555554433 223322 2333455555544322 12334444444444444
No 89
>PLN02671 pectinesterase
Probab=78.56 E-value=35 Score=27.87 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=44.5
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcccc-CcEEEecC-------CCeE
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLY-SGVQISNE-------TTAT 124 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~-~Gi~v~~~-------a~p~ 124 (137)
+..+.+|++.+.... ++. ...+-..++|.|...-+ ||.+.+..++|+|+|+.... .|.....+ ..-+
T Consensus 187 ra~f~~c~f~G~QDT-Ly~-~~gR~yf~~CyIeG~VD---FIFG~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~Gfv 261 (359)
T PLN02671 187 KAFFYKVRVLGAQDT-LLD-ETGSHYFYQCYIQGSVD---FIFGNAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFS 261 (359)
T ss_pred cEEEEcceEeccccc-cEe-CCCcEEEEecEEEEecc---EEecceeEEEeccEEEEecCCCeEEEeeccCCCCCCccEE
Confidence 556677777665432 332 24455667777766543 55677888999999986532 34332221 1226
Q ss_pred EeceEEec
Q psy683 125 LDACGLRR 132 (137)
Q Consensus 125 l~~n~I~~ 132 (137)
+.+|+|..
T Consensus 262 F~~C~itg 269 (359)
T PLN02671 262 FVNCVING 269 (359)
T ss_pred EEccEEcc
Confidence 77888754
No 90
>PLN02304 probable pectinesterase
Probab=78.32 E-value=31 Score=28.42 Aligned_cols=53 Identities=4% Similarity=0.081 Sum_probs=28.8
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
+..+.+|+|.+.... ++. ...+-..++|.|...-+ ||.+.+..++|+|+|...
T Consensus 196 ra~fy~C~f~G~QDT-Ly~-~~gR~Yf~~CyIeG~VD---FIFG~g~A~Fe~C~I~s~ 248 (379)
T PLN02304 196 QAAFWGCGFFGAQDT-LHD-DRGRHYFKDCYIQGSID---FIFGDARSLYENCRLISM 248 (379)
T ss_pred cEEEEeceEecccce-eEe-CCCCEEEEeeEEccccc---EEeccceEEEEccEEEEe
Confidence 344555555554332 322 23344555555554432 556777888888888754
No 91
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=74.88 E-value=56 Score=28.34 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=13.6
Q ss_pred cEEeccEEEcCCCCcEEEEeCceeEEEeeEEEe
Q psy683 31 PIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 63 (137)
Q Consensus 31 ~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~ 63 (137)
--+++|.|.+.- =||++.+..++++|+|+.
T Consensus 396 q~y~~C~I~Gtv---DFIFG~a~avfq~c~i~~ 425 (565)
T PLN02468 396 QFYRECNIYGTV---DFIFGNSAVVFQNCNILP 425 (565)
T ss_pred eEEEeeEEeccc---ceeeccceEEEeccEEEE
Confidence 344444444322 134455555555555543
No 92
>PLN02497 probable pectinesterase
Probab=74.41 E-value=44 Score=26.96 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=8.4
Q ss_pred EEEeCCeeEEEccEEEc
Q psy683 93 YFYDNGHGKLEDNDIFN 109 (137)
Q Consensus 93 ~v~~~~~g~ie~n~I~~ 109 (137)
||.+.+..+||+|+|+.
T Consensus 186 FIFG~g~a~Fe~C~I~s 202 (331)
T PLN02497 186 FIFGSGQSIYESCVIQV 202 (331)
T ss_pred EEccCceEEEEccEEEE
Confidence 33444555555555543
No 93
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=74.26 E-value=27 Score=30.37 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=26.4
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEc
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHS 86 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~ 86 (137)
+|.++ .+....+.+|++.+-+ .=+|+. .++-.+++|.|++.-. +|-.++...+.+|.|+.
T Consensus 382 AvAlrv~~D~~~fy~C~~~g~Q-DTLy~~-~~rq~y~~c~I~GtvD---FIFG~a~avfq~c~i~~ 442 (587)
T PLN02313 382 AVALRVGSDFSAFYQCDMFAYQ-DTLYVH-SNRQFFVKCHITGTVD---FIFGNAAAVLQDCDINA 442 (587)
T ss_pred eEEEEecCCcEEEEeeeEeccc-chhccC-CCcEEEEeeEEeeccc---eeccceeEEEEccEEEE
Confidence 34444 2334555555555433 223322 2233555555554432 13344455555555543
No 94
>PLN02497 probable pectinesterase
Probab=70.94 E-value=54 Score=26.46 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=45.2
Q ss_pred EEEc-cCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEEec
Q psy683 69 VWIT-TGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGLRR 132 (137)
Q Consensus 69 v~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~ 132 (137)
|.+. .+.+..+.+|++...++. +| ...++-.+++|.|.++.. .|-..+...+.+|+|+-
T Consensus 143 VAl~v~gDr~~fy~C~f~G~QDT-Ly-~~~gRqyf~~C~IeG~VD---FIFG~g~a~Fe~C~I~s 202 (331)
T PLN02497 143 VAAMIGGDKSAFYSCGFAGVQDT-LW-DSDGRHYFKRCTIQGAVD---FIFGSGQSIYESCVIQV 202 (331)
T ss_pred EEEEecCCcEEEEeeEEeccccc-ee-eCCCcEEEEeCEEEeccc---EEccCceEEEEccEEEE
Confidence 4554 355678999999998865 55 567889999999999975 44457788888898873
No 95
>PLN02176 putative pectinesterase
Probab=67.71 E-value=65 Score=26.12 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=30.5
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEc
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFN 109 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~ 109 (137)
+..+.+|++.+.... ++. ...+-..++|.|...-+ ||.+.+..++|+|+|+.
T Consensus 157 r~~f~~C~f~G~QDT-Ly~-~~gRqyf~~CyIeG~VD---FIFG~a~a~Fe~C~I~s 208 (340)
T PLN02176 157 KYAIIDSSFDGFQDT-LFD-GKGRHYYKRCVISGGID---FIFGYAQSIFEGCTLKL 208 (340)
T ss_pred cEEEEccEEecccce-eEe-CCcCEEEEecEEEeccc---EEecCceEEEeccEEEE
Confidence 445666666554332 333 23445566666665543 45577788888888874
No 96
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=64.81 E-value=31 Score=28.08 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=5.2
Q ss_pred eEEEccEEEcc
Q psy683 100 GKLEDNDIFNH 110 (137)
Q Consensus 100 g~ie~n~I~~n 110 (137)
..+++|.|.+.
T Consensus 256 ~yftNsyI~Gd 266 (405)
T COG4677 256 TYFTNSYIEGD 266 (405)
T ss_pred hheecceeccc
Confidence 34455555444
No 97
>PLN02197 pectinesterase
Probab=64.81 E-value=21 Score=31.07 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=25.6
Q ss_pred CEEEe-cCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEE
Q psy683 22 GIQIR-TSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIH 85 (137)
Q Consensus 22 GI~v~-~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~ 85 (137)
+|.++ .+.+..|.+|++.+-+ .=+|.. .++-.+++|.|+++-. +|-.++...+.+|.|+
T Consensus 384 AVAlrv~~D~~~fy~C~f~GyQ-DTLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~ 443 (588)
T PLN02197 384 AVAIRVNGDRAVIFNCRFDGYQ-DTLYVN-NGRQFYRNIVVSGTVD---FIFGKSATVIQNSLIV 443 (588)
T ss_pred eEEEEecCCcEEEEEeEEEecC-cceEec-CCCEEEEeeEEEeccc---ccccceeeeeecCEEE
Confidence 34444 2335555555555433 223322 2344455555554422 1233444445555544
No 98
>PLN02314 pectinesterase
Probab=61.50 E-value=1.1e+02 Score=26.78 Aligned_cols=74 Identities=9% Similarity=0.148 Sum_probs=37.8
Q ss_pred eEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccc----cCcEEEecCCC-------
Q psy683 54 GLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHL----YSGVQISNETT------- 122 (137)
Q Consensus 54 ~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~----~~Gi~v~~~a~------- 122 (137)
..+.+|.|.+... =++.. ..+-..++|.|...-+ ||.+++..+|++|+|+--. ..+ .|...++
T Consensus 395 ~~f~~c~~~G~QD-TLy~~-~~rq~y~~C~I~GtvD---FIFG~a~avf~~c~i~~~~~~~~~~~-~iTA~~r~~~~~~~ 468 (586)
T PLN02314 395 SVFYQCSFDAFQD-TLYAH-SNRQFYRDCDITGTID---FIFGNAAVVFQNCNIQPRQPLPNQFN-TITAQGKKDPNQNT 468 (586)
T ss_pred EEEEeeEEEeccc-hheeC-CCCEEEEeeEEEeccc---eeccCceeeeeccEEEEecCCCCCCc-eEecCCCCCCCCCC
Confidence 3455555544332 13322 2334555666655433 5556777778888886532 113 2332221
Q ss_pred -eEEeceEEecC
Q psy683 123 -ATLDACGLRRS 133 (137)
Q Consensus 123 -p~l~~n~I~~~ 133 (137)
-++.+|+|...
T Consensus 469 G~vf~~c~i~~~ 480 (586)
T PLN02314 469 GISIQRCTISAF 480 (586)
T ss_pred EEEEEeeEEecC
Confidence 26777777654
No 99
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=61.11 E-value=1e+02 Score=26.95 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=19.2
Q ss_pred ccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 76 APVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 76 ~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
+-..++|.|...-+ ||.+++..+|++|+|+-.
T Consensus 410 Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~~~ 441 (587)
T PLN02484 410 RQFFRECDIYGTVD---FIFGNAAVVLQNCSIYAR 441 (587)
T ss_pred cEEEEecEEEeccc---eecccceeEEeccEEEEe
Confidence 34455555554433 455667777888887754
No 100
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=60.10 E-value=74 Score=25.03 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=64.6
Q ss_pred EEEeeEEEcCccCCEEEecCCCcEEeccEEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCC
Q psy683 9 QVLMMVHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGK 88 (137)
Q Consensus 9 ~i~~c~I~~~~~~GI~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~ 88 (137)
+|++|+|.+ +.+++ ....+..+.+|.+.. + +-.+- .....+++|.+..-+.+||+-. .+.++.++.|...+
T Consensus 22 ~l~~~~f~d-GES~L--Kes~nI~~~~~~F~~-K-YP~Wh--~~~~~i~~~~f~~~aRa~iWYs--~~i~m~d~~i~apK 92 (277)
T PF12541_consen 22 RLENCTFAD-GESPL--KESRNIELKNCIFKW-K-YPLWH--SDNIKIENCYFTEMARAAIWYS--NNITMKDSVIQAPK 92 (277)
T ss_pred EEEeeEEeC-CCccc--ccccceEEECCEEee-E-CceEE--ECCeEEEeeEEeecceeeeeEe--CCEEEEeeeccCch
Confidence 567777775 33443 345666677766652 2 33432 2245688888888888887654 56788888887776
Q ss_pred cccEEEEeCCeeEEEccEEEccccCcEEEecCCCeEEeceEE
Q psy683 89 QVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACGL 130 (137)
Q Consensus 89 ~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I 130 (137)
. +.....-.|++++|.+....++... ...|++.++
T Consensus 93 ~----fR~~~~i~L~nv~~~~A~Et~W~c~---~i~l~nv~~ 127 (277)
T PF12541_consen 93 M----FRECSNITLENVDIPDADETLWNCR---GIKLKNVQA 127 (277)
T ss_pred H----hhcccCcEEEeeEeCCCcccCEEeC---CeEEEeEEE
Confidence 2 2233444678888877766555432 345555554
No 101
>PLN02916 pectinesterase family protein
Probab=58.30 E-value=1.2e+02 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=17.9
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
-..++|.|...-+ ||.+++..+|++|+|+-.
T Consensus 328 qyy~~C~I~GtVD---FIFG~a~avFq~C~I~~~ 358 (502)
T PLN02916 328 QFYRDCHIYGTID---FIFGDAAVVFQNCDIFVR 358 (502)
T ss_pred EEEEecEEecccc---eeccCceEEEecCEEEEe
Confidence 3445555544433 445667777777777654
No 102
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=54.73 E-value=35 Score=29.41 Aligned_cols=17 Identities=6% Similarity=0.292 Sum_probs=7.9
Q ss_pred EEEeCceeEEEeeEEEe
Q psy683 47 YVHEKGVGLIEENEVYA 63 (137)
Q Consensus 47 ~v~~~~~~~i~~n~I~~ 63 (137)
+|++.+..++++|+|+.
T Consensus 381 FIFG~a~avfq~c~i~~ 397 (541)
T PLN02416 381 YIFGNAAVVFQACNIVS 397 (541)
T ss_pred eeeccceEEEeccEEEE
Confidence 34444444455554443
No 103
>PRK09718 hypothetical protein; Validated
Probab=54.60 E-value=28 Score=29.69 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=8.6
Q ss_pred cEEEeeEEEcCCcccEEEE
Q psy683 77 PVLRRNRIHSGKQVGVYFY 95 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~ 95 (137)
..+.++.+.+++-.|+-+.
T Consensus 145 A~L~rvsFinCKLsGAdFS 163 (512)
T PRK09718 145 RRLHNVIFIKASGEYVDFS 163 (512)
T ss_pred ceecceEEEeccccCcccc
Confidence 3444444444444444433
No 104
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=54.40 E-value=1.5e+02 Score=25.85 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=55.0
Q ss_pred eEEEEeeEEEcCccCCEEEecCCC----cEEeccEEEc---CCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEE
Q psy683 7 KAQVLMMVHCGNALAGIQIRTSSD----PIVRHNKIHH---GQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVL 79 (137)
Q Consensus 7 ~g~i~~c~I~~~~~~GI~v~~~a~----~~i~~n~I~~---~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i 79 (137)
.-+++.-.|.+.....+.+....+ +.+++-++-+ -...|+.++. ..+|++|.++.|. +.|.+. .++..+
T Consensus 330 ~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~--nS~i~dcF~h~nD-D~iKlY-hS~v~v 405 (582)
T PF03718_consen 330 TLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP--NSTIRDCFIHVND-DAIKLY-HSNVSV 405 (582)
T ss_dssp EEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B--T--T-EEEEEEEEESS--SEE---STTEEE
T ss_pred eEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCccccC--CCeeeeeEEEecC-chhhee-ecCcce
Confidence 346778888888888888886553 6777777665 3346888773 3457888777774 567665 588899
Q ss_pred EeeEEEcCCcccEEEEeC-----CeeEEEccEEEcc
Q psy683 80 RRNRIHSGKQVGVYFYDN-----GHGKLEDNDIFNH 110 (137)
Q Consensus 80 ~~n~I~~~~~~GI~v~~~-----~~g~ie~n~I~~n 110 (137)
+++.|+.+....|+-.+= ..-.+++++|-.+
T Consensus 406 ~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 406 SNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHN 441 (582)
T ss_dssp EEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE-
T ss_pred eeeEEEecCCCCeEEeeccccccCceEEeeeEEEee
Confidence 999999987555543211 2345666666665
No 105
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=53.04 E-value=1.5e+02 Score=25.57 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=16.5
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFN 109 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~ 109 (137)
-..++|.|...-+ ||.+++..+|++|+|+-
T Consensus 364 q~y~~c~I~GtVD---FIFG~a~avfq~c~i~~ 393 (538)
T PLN03043 364 QFYRECDIYGTVD---FIFGNAAAIFQNCNLYA 393 (538)
T ss_pred EEEEeeEEeeccc---eEeecceeeeeccEEEE
Confidence 3444444444332 44566666777777755
No 106
>PRK09718 hypothetical protein; Validated
Probab=52.96 E-value=40 Score=28.79 Aligned_cols=60 Identities=2% Similarity=0.042 Sum_probs=25.8
Q ss_pred EEEeeEEEeCCcCcEEEccC--CccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEEE
Q psy683 55 LIEENEVYANTLAGVWITTG--SAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQI 117 (137)
Q Consensus 55 ~i~~n~I~~n~~~Gv~v~~~--a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~v 117 (137)
.+.++.+.++...|+..... ....+.+|.+....=.+.-+ .+..+++|++.+.......+
T Consensus 146 ~L~rvsFinCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnL---skA~F~gCDLseAdFSEcdL 207 (512)
T PRK09718 146 RLHNVIFIKASGEYVDFSKNILDTVDFSQSQLTHSNFRECQI---RNSNFDNCYLYASHFTRAEF 207 (512)
T ss_pred eecceEEEeccccCcccccCccCCcEEeeeEecccCCCCCcC---CCCEEeCccCCcCCccCCcc
Confidence 34444444444444433321 22345555555444333222 12335555555554444444
No 107
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=52.10 E-value=1.6e+02 Score=25.48 Aligned_cols=75 Identities=7% Similarity=0.076 Sum_probs=40.9
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcccc----CcEEEecC-------C
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLY----SGVQISNE-------T 121 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~----~Gi~v~~~-------a 121 (137)
+..+.+|.|.+.... ++.. ..+-..++|.|...-+ ||.+++..+|++|+|+--.. .|.....+ .
T Consensus 334 ra~fy~C~f~G~QDT-Ly~~-~~Rqyy~~C~IeGtVD---FIFG~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~t 408 (530)
T PLN02933 334 HSAFYRCEFDGYQDT-LYVH-SAKQFYRECDIYGTID---FIFGNAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPT 408 (530)
T ss_pred cEEEEEeEEEecccc-cccC-CCceEEEeeEEecccc---eeccCceEEEeccEEEEeccCCCCceEEEecCCCCCCCCc
Confidence 345556666555432 3332 2344566666666543 55677888888888875431 23332222 1
Q ss_pred CeEEeceEEec
Q psy683 122 TATLDACGLRR 132 (137)
Q Consensus 122 ~p~l~~n~I~~ 132 (137)
.-++.+|+|..
T Consensus 409 Gfvf~~C~it~ 419 (530)
T PLN02933 409 GISIISSRILA 419 (530)
T ss_pred eEEEEeeEEec
Confidence 22778888765
No 108
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=50.87 E-value=1.7e+02 Score=25.47 Aligned_cols=76 Identities=9% Similarity=0.140 Sum_probs=40.9
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcccc----CcEEEecC-------C
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLY----SGVQISNE-------T 121 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~----~Gi~v~~~-------a 121 (137)
+..+-+|+|.+... =++.. ..+-..++|.|...-+ ||.+++..+|++|+|+-... .+....++ .
T Consensus 374 ~~~fy~c~~~G~QD-TLy~~-~~rq~y~~C~I~GtvD---FIFG~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~ 448 (565)
T PLN02468 374 LSVFYRCTMDAFQD-TLYAH-AQRQFYRECNIYGTVD---FIFGNSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNT 448 (565)
T ss_pred cEEEEEeEEEeccc-hhccC-CCceEEEeeEEecccc---eeeccceEEEeccEEEEecCCCCCCceEEecCCCCCCCCc
Confidence 34555566555432 23332 2344566666666543 56677888888888865421 23322221 1
Q ss_pred CeEEeceEEecC
Q psy683 122 TATLDACGLRRS 133 (137)
Q Consensus 122 ~p~l~~n~I~~~ 133 (137)
.-++.+|+|...
T Consensus 449 G~vf~~c~i~~~ 460 (565)
T PLN02468 449 GISIQNCTILPL 460 (565)
T ss_pred eEEEEccEEecC
Confidence 127788887754
No 109
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=50.47 E-value=1.7e+02 Score=25.38 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=17.7
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
-..++|.|...-+ ||.+++..+||+|+|+--
T Consensus 374 qyy~~C~I~GtVD---FIFG~a~avfq~c~i~~~ 404 (548)
T PLN02301 374 QFYRDSYITGTVD---FIFGNAAVVFQNCKIVAR 404 (548)
T ss_pred EEEEeeEEEeccc---eecccceeEEeccEEEEe
Confidence 3455555554433 445666677777777654
No 110
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=50.38 E-value=63 Score=26.36 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=9.0
Q ss_pred EEEeCceeEEEeeEEEe
Q psy683 47 YVHEKGVGLIEENEVYA 63 (137)
Q Consensus 47 ~v~~~~~~~i~~n~I~~ 63 (137)
++++++..++.+|+|.-
T Consensus 269 fIfGsgtaVFd~c~i~~ 285 (405)
T COG4677 269 FIFGSGTAVFDNCEIQV 285 (405)
T ss_pred EEeccceEEeccceEEE
Confidence 44455555555555544
No 111
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=48.63 E-value=2e+02 Score=25.66 Aligned_cols=76 Identities=7% Similarity=0.148 Sum_probs=38.6
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcccc---CcEEEecCCC-------
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLY---SGVQISNETT------- 122 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~---~Gi~v~~~a~------- 122 (137)
+..|.+|+|.+... =++.. ..+-..++|.|...-+ ||.+++..+|++|+|+-... ..-+|...++
T Consensus 366 ra~fy~C~f~G~QD-TLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~t 440 (670)
T PLN02217 366 ESIFYNCKFDGYQD-TLYAH-SHRQFYRDCTISGTID---FLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPREST 440 (670)
T ss_pred cEEEEcceeeeccc-hhccC-CCcEEEEeCEEEEecc---EEecCceEEEEccEEEEccCCCCCceeEecCCCCCCCCCc
Confidence 34455555554332 13322 2344555555555432 45567777888888875421 1223333221
Q ss_pred -eEEeceEEecC
Q psy683 123 -ATLDACGLRRS 133 (137)
Q Consensus 123 -p~l~~n~I~~~ 133 (137)
-++.+|+|...
T Consensus 441 Gfvf~~C~i~~~ 452 (670)
T PLN02217 441 GFVLQGCTIVGE 452 (670)
T ss_pred eEEEEeeEEecC
Confidence 26777777654
No 112
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=47.09 E-value=1.9e+02 Score=25.13 Aligned_cols=76 Identities=8% Similarity=0.192 Sum_probs=41.5
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcccc---CcEEEecCC--------
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLY---SGVQISNET-------- 121 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~---~Gi~v~~~a-------- 121 (137)
+..+.+|.|.+... =++.. ..+-..++|.|...-+ ||.+++..+|++|+|+--.. ..-+|...+
T Consensus 376 ~~~f~~c~~~G~QD-TLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~ 450 (572)
T PLN02990 376 YAVFYNCQIDGYQD-TLYVH-SHRQFFRDCTVSGTVD---FIFGDAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVREST 450 (572)
T ss_pred cEEEEeeeEecccc-hhccC-CCcEEEEeeEEecccc---eEccCceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCc
Confidence 34555555554332 23332 2344556666665543 45677888888888875321 123333222
Q ss_pred CeEEeceEEecC
Q psy683 122 TATLDACGLRRS 133 (137)
Q Consensus 122 ~p~l~~n~I~~~ 133 (137)
.-++.+|+|...
T Consensus 451 G~vf~~C~it~~ 462 (572)
T PLN02990 451 GLVLQNCHITGE 462 (572)
T ss_pred eEEEEeeEEecC
Confidence 227888888764
No 113
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=46.64 E-value=1.9e+02 Score=25.00 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=56.1
Q ss_pred CcEEeccEEEcCC----CCcEEEEeC-ceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEc
Q psy683 30 DPIVRHNKIHHGQ----HGGVYVHEK-GVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLED 104 (137)
Q Consensus 30 ~~~i~~n~I~~~~----~~GI~v~~~-~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~ 104 (137)
.-..++-+|.+.. +..|.+.-. -+..+.+|+|.+... =++.. ..+-..++|.|...-+ ||.+++..+|++
T Consensus 331 ~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-TLy~~-~~rq~y~~C~I~GtVD---FIFG~a~avfq~ 405 (553)
T PLN02708 331 GFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-TLYAH-SLRQFYKSCRIQGNVD---FIFGNSAAVFQD 405 (553)
T ss_pred CeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-cceeC-CCceEEEeeEEeecCC---EEecCceEEEEc
Confidence 3444444444432 133444333 245667777766543 34443 3455677777777654 667888899999
Q ss_pred cEEEcc--------ccCcEEEecC-CCe------EEeceEEecC
Q psy683 105 NDIFNH--------LYSGVQISNE-TTA------TLDACGLRRS 133 (137)
Q Consensus 105 n~I~~n--------~~~Gi~v~~~-a~p------~l~~n~I~~~ 133 (137)
|+|.-- ...+....++ ..| ++.+|+|...
T Consensus 406 c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 406 CAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred cEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 999843 1123333222 222 8899998764
No 114
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=44.91 E-value=2e+02 Score=24.60 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=61.0
Q ss_pred CcEEeccEEEcCCC----CcEEEEe-CceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEc
Q psy683 30 DPIVRHNKIHHGQH----GGVYVHE-KGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLED 104 (137)
Q Consensus 30 ~~~i~~n~I~~~~~----~GI~v~~-~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~ 104 (137)
.-..++-+|.+..+ ..|.+.- .-+..+.+|.|.+... =+++. ..+-..++|.|...-+ ||.+++..+|++
T Consensus 271 ~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-TLy~~-~~rqyy~~C~I~G~vD---FIFG~a~avf~~ 345 (497)
T PLN02698 271 GFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-TLYAA-ALRQFYRECDIYGTID---FIFGNAAAVFQN 345 (497)
T ss_pred CeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-hheeC-CCcEEEEeeEEEeccc---eEecccceeecc
Confidence 34455555554322 3444443 3466788888887654 35554 3456788898887654 566889999999
Q ss_pred cEEEcccc----CcEEEecC-C------CeEEeceEEecC
Q psy683 105 NDIFNHLY----SGVQISNE-T------TATLDACGLRRS 133 (137)
Q Consensus 105 n~I~~n~~----~Gi~v~~~-a------~p~l~~n~I~~~ 133 (137)
|+|+-... .+.....+ . .-++.+|+|...
T Consensus 346 C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 346 CYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred cEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 99986432 22333222 1 227889998764
No 115
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=43.99 E-value=2.1e+02 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=18.3
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
-..++|.|...-+ ||.+++..+|++|+|.--
T Consensus 370 qyy~~C~I~GtVD---FIFG~a~avfq~C~i~~r 400 (537)
T PLN02506 370 QFYRECEIYGTID---FIFGNGAAVLQNCKIYTR 400 (537)
T ss_pred eEEEeeEEecccc---eEccCceeEEeccEEEEc
Confidence 3445555544332 555667777777777754
No 116
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=39.91 E-value=2.6e+02 Score=24.52 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=45.3
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccc----cCcEEEecC-------C
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHL----YSGVQISNE-------T 121 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~----~~Gi~v~~~-------a 121 (137)
+..+.+|+|.+.... ++.. ..+-..++|.|...-+ ||.+++..+|++|+|+-.. ..|.....+ .
T Consensus 401 r~~f~~c~~~G~QDT-Ly~~-~~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~ 475 (596)
T PLN02745 401 RSIFLNCRFEGYQDT-LYAQ-THRQFYRSCVITGTID---FIFGDAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETT 475 (596)
T ss_pred cEEEEeeEEeecccc-cccC-CCcEEEEeeEEEeecc---EEecceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCc
Confidence 456666666665432 4332 3455677777777654 6777888888888887642 123332222 1
Q ss_pred CeEEeceEEecC
Q psy683 122 TATLDACGLRRS 133 (137)
Q Consensus 122 ~p~l~~n~I~~~ 133 (137)
.-++.+|+|...
T Consensus 476 Gfvf~~c~i~~~ 487 (596)
T PLN02745 476 GIVLQNCRIAPD 487 (596)
T ss_pred eEEEEeeEEecC
Confidence 127888888764
No 117
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=37.91 E-value=2.6e+02 Score=24.03 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=16.4
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
-..++|.|...-+ ||.+++..+|++|+|+--
T Consensus 335 qyyrdC~I~GtVD---FIFG~a~avFq~C~I~sr 365 (509)
T PLN02488 335 QFYRECFITGTVD---FICGNAAAVFQFCQIVAR 365 (509)
T ss_pred EEEEeeEEeeccc---eEecceEEEEEccEEEEe
Confidence 3444444444332 344556666667766643
No 118
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=36.51 E-value=2.3e+02 Score=22.93 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=11.4
Q ss_pred ccEEEEeC--CeeEEEccEEEccc
Q psy683 90 VGVYFYDN--GHGKLEDNDIFNHL 111 (137)
Q Consensus 90 ~GI~v~~~--~~g~ie~n~I~~n~ 111 (137)
.|+.+.-+ ++-..|.|-+..-.
T Consensus 254 ~g~a~~iG~~AkiyvE~NyF~~~~ 277 (345)
T COG3866 254 FGVAITIGTSAKIYVENNYFENGS 277 (345)
T ss_pred cceEEeeccceEEEEecceeccCC
Confidence 44444443 55556666555543
No 119
>PLN02197 pectinesterase
Probab=36.29 E-value=3e+02 Score=24.15 Aligned_cols=51 Identities=6% Similarity=0.125 Sum_probs=26.1
Q ss_pred eEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEc
Q psy683 54 GLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFN 109 (137)
Q Consensus 54 ~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~ 109 (137)
..+.+|.|.+... =++.. ..+-..++|.|...-+ ||.+.+..+|++|+|+-
T Consensus 394 ~~fy~C~f~GyQD-TLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avfq~C~i~~ 444 (588)
T PLN02197 394 AVIFNCRFDGYQD-TLYVN-NGRQFYRNIVVSGTVD---FIFGKSATVIQNSLIVV 444 (588)
T ss_pred EEEEEeEEEecCc-ceEec-CCCEEEEeeEEEeccc---ccccceeeeeecCEEEE
Confidence 3445555544432 23332 2334555555555433 44566677777777764
No 120
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=32.79 E-value=3.3e+02 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.291 Sum_probs=17.7
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
-..++|.|...-+ ||.+++..+|++|+|+--
T Consensus 391 qyy~~C~I~GtVD---FIFG~a~avfq~C~i~~~ 421 (566)
T PLN02713 391 QFYRECDIYGTVD---FIFGNAAVVFQNCNLYPR 421 (566)
T ss_pred EEEEeeEEecccc---eecccceEEEeccEEEEe
Confidence 3445555544332 445667777777777654
No 121
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=32.60 E-value=3.3e+02 Score=23.51 Aligned_cols=75 Identities=5% Similarity=0.131 Sum_probs=40.2
Q ss_pred eeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccc----cCcEEEecC-CC-----
Q psy683 53 VGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHL----YSGVQISNE-TT----- 122 (137)
Q Consensus 53 ~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~----~~Gi~v~~~-a~----- 122 (137)
+..+.+|.|.+... =++.. ..+-..++|.|...-+ ||.+++..+|++|+|+.-. ..|.....+ ..
T Consensus 322 ~~~fy~C~f~G~QD-TLy~~-~~Rqyy~~C~I~GtVD---FIFG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~ 396 (520)
T PLN02201 322 LSVFYRCAMRGYQD-TLYTH-TMRQFYRECRITGTVD---FIFGDATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPT 396 (520)
T ss_pred cEEEEeeeeeccCC-eeEeC-CCCEEEEeeEEeeccc---EEecCceEEEEccEEEEecCCCCCCceEEecCCCCCCCCc
Confidence 34555555555432 23332 2344556666665543 5567788888888887632 123333222 11
Q ss_pred -eEEeceEEec
Q psy683 123 -ATLDACGLRR 132 (137)
Q Consensus 123 -p~l~~n~I~~ 132 (137)
-++.+|+|..
T Consensus 397 Gfvf~~C~it~ 407 (520)
T PLN02201 397 GFSIQFSNISA 407 (520)
T ss_pred EEEEEeeEEec
Confidence 2678888765
No 122
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=30.60 E-value=57 Score=16.39 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=9.2
Q ss_pred CCEEEecCCCcEEeccEEEc
Q psy683 21 AGIQIRTSSDPIVRHNKIHH 40 (137)
Q Consensus 21 ~GI~v~~~a~~~i~~n~I~~ 40 (137)
.|++++ ++..+++|.|++
T Consensus 8 ~G~y~~--~d~~vsGNvIrn 25 (27)
T TIGR03807 8 WGIYLE--FDAVVTGNVIRN 25 (27)
T ss_pred eEEEEe--eeeEEecceecC
Confidence 455554 235566666554
No 123
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=29.16 E-value=3.8e+02 Score=23.21 Aligned_cols=53 Identities=9% Similarity=0.216 Sum_probs=28.0
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcccc--CcEEEecCC--------CeEEeceEEec
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLY--SGVQISNET--------TATLDACGLRR 132 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~--~Gi~v~~~a--------~p~l~~n~I~~ 132 (137)
-..++|.|...-+ ||.+++..+|++|+|.--.. ..-+|...+ .-++.+|+|..
T Consensus 364 qyy~~C~I~GtVD---FIFG~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~ 426 (529)
T PLN02170 364 QFYRETDITGTVD---FIFGNSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITA 426 (529)
T ss_pred EEEEeeEEccccc---eecccceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEec
Confidence 3445555544432 44566777788887776432 122333222 12677777765
No 124
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=28.28 E-value=58 Score=27.55 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=39.4
Q ss_pred cCCcccEEEEeCCe------eEEEccEEEccccCcEEEecCCCeEEeceEEecCcC
Q psy683 86 SGKQVGVYFYDNGH------GKLEDNDIFNHLYSGVQISNETTATLDACGLRRSMP 135 (137)
Q Consensus 86 ~~~~~GI~v~~~~~------g~ie~n~I~~n~~~Gi~v~~~a~p~l~~n~I~~~~~ 135 (137)
+++..|+..++... |...+|.|+++....-|+...-+..|-+|++.++|-
T Consensus 121 dg~~~GlIAY~~~~~~~WnvG~y~g~~ItN~~~~nt~~~GHpD~e~N~c~F~~~q~ 176 (465)
T PF01690_consen 121 DGKWDGLIAYDNSSSDGWNVGNYNGCTITNYKADNTWKYGHPDLELNGCHFNDGQV 176 (465)
T ss_pred CCceeeeEEecCccccccccccccCcEEecccccCcccCCCCCceecCcccccCce
Confidence 45567777776665 568899999999888888888888888998887763
No 125
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=28.26 E-value=4e+02 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=17.5
Q ss_pred cEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 77 PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 77 ~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
-..++|.|...-+ ||.+++..+|++|+|+--
T Consensus 368 qyy~~C~I~GtVD---FIFG~a~avfq~c~i~~~ 398 (541)
T PLN02416 368 QFYRECDIYGTID---YIFGNAAVVFQACNIVSK 398 (541)
T ss_pred eEEEeeEEeeccc---eeeccceEEEeccEEEEe
Confidence 3445555544332 455667777777777653
No 126
>KOG2675|consensus
Probab=28.09 E-value=3.8e+02 Score=22.79 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=45.5
Q ss_pred EEEcCCCCcEEEEeCceeEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEccccCcEE
Q psy683 37 KIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQ 116 (137)
Q Consensus 37 ~I~~~~~~GI~v~~~~~~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n~~~Gi~ 116 (137)
++.+|...||++. .++..++|..+...+|.+. +.-|+|. |....+.=||++..+ -+|+|.-.+..-+-
T Consensus 376 tld~Ckk~svVfD----~~Va~~eiinc~~v~iQv~-g~~PtiS---I~ktdGc~iYLSk~s----L~~eIvtsKSsemN 443 (480)
T KOG2675|consen 376 TLDNCKKTSVVFD----DLVAIVEIINCQDVQIQVM-GSVPTIS---IDKTDGCHIYLSKDS----LDCEIVTSKSSEMN 443 (480)
T ss_pred EecCCceeeEEEe----ccceeeEEeeccceeeEEc-ccCCeEE---EecCCCeeEEecccc----ccceEEeeccccee
Confidence 4456667788663 3677888999888888886 5667764 444445556766554 46777766655544
Q ss_pred E
Q psy683 117 I 117 (137)
Q Consensus 117 v 117 (137)
|
T Consensus 444 i 444 (480)
T KOG2675|consen 444 I 444 (480)
T ss_pred E
Confidence 4
No 127
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=20.46 E-value=5.9e+02 Score=22.32 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=26.7
Q ss_pred eEEEeeEEEeCCcCcEEEccCCccEEEeeEEEcCCcccEEEEeCCeeEEEccEEEcc
Q psy683 54 GLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNH 110 (137)
Q Consensus 54 ~~i~~n~I~~n~~~Gv~v~~~a~~~i~~n~I~~~~~~GI~v~~~~~g~ie~n~I~~n 110 (137)
..+-+|.|.+... =+++. ..+-..++|.|...-+ ||.+.+..+|++|+|+--
T Consensus 392 ~~fy~C~~~g~QD-TLy~~-~~rq~y~~c~I~GtvD---FIFG~a~avfq~c~i~~r 443 (587)
T PLN02313 392 SAFYQCDMFAYQD-TLYVH-SNRQFFVKCHITGTVD---FIFGNAAAVLQDCDINAR 443 (587)
T ss_pred EEEEeeeEecccc-hhccC-CCcEEEEeeEEeeccc---eeccceeEEEEccEEEEe
Confidence 3444555544322 23322 2233555555555433 445667777777777754
Done!