RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy683
(137 letters)
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase;
2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Length = 377
Score = 41.7 bits (97), Expect = 2e-05
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 17/117 (14%)
Query: 25 IRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRI 84
+ S+ ++ + GV + ++ +++ N +GV + + N+I
Sbjct: 231 LALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQI 290
Query: 85 HSGKQVGVY-----------------FYDNGHGKLEDNDIFNHLYSGVQISNETTAT 124
H Q +Y + ++E N I S I T
Sbjct: 291 HDNAQAAAVPEVLLQSFDDTAGASGTYYTTLNTRIEGNTISGSANSTYGIQERNDGT 347
Score = 41.7 bits (97), Expect = 2e-05
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 17 GNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKG-VGLIEENEVYANTLAGVWITTGS 75
N L G D + +N + G V ++ N Y N +G+ + G
Sbjct: 169 DNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGL 228
Query: 76 A-------PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATL 125
++ + + GV L++ DI + SGV++ +
Sbjct: 229 EDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQI 285
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase;
1.80A {Bacillus SP} PDB: 2inv_A*
Length = 410
Score = 40.3 bits (93), Expect = 7e-05
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 17 GNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSA 76
N GI++ + +D + V + +N + A V +T
Sbjct: 158 HNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMI-AECGNCVELTGAGQ 216
Query: 77 PVLRRNRIHSGKQVGVYFYDNGHGKL--EDNDIFNHLYSGVQISN 119
+ GV H L N++F S ++ +
Sbjct: 217 ATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTG 261
Score = 29.1 bits (64), Expect = 0.45
Identities = 13/142 (9%), Positives = 31/142 (21%), Gaps = 25/142 (17%)
Query: 14 VHCGNALAGIQIRTSSDPIVRHNKIHHGQHG------------------------GVYVH 49
+ + +R + V N I + +
Sbjct: 178 MGFVYLEHALIVRGADALRVNDNMIAECGNCVELTGAGQATIVSGNHMGAGPDGVTLLAE 237
Query: 50 EKGVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNG-HGKLEDNDIF 108
L+ N ++ + + T + + NR+ + + + N I
Sbjct: 238 NHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCKENLITANHIR 297
Query: 109 NHLYSGVQISNETTATLDACGL 130
D G+
Sbjct: 298 RTNEGYPPFIGRGNGLDDLYGV 319
Score = 26.8 bits (58), Expect = 2.7
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 52 GVGLIEENEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHL 111
GVG Y N G+ + + + + + ++ DN I
Sbjct: 147 GVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHALIVRGADALRVNDNMIAE-C 205
Query: 112 YSGVQISNETTATL 125
+ V+++ AT+
Sbjct: 206 GNCVELTGAGQATI 219
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 34.0 bits (77), Expect = 0.008
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVG-LIEENEVYANTLA----------GVW 70
S + HH ++ G+ ++ G + ++ Y N G
Sbjct: 130 QGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPK 189
Query: 71 ITTGSAPVLRRNRIHSGKQVGVYFYDNGHG-KLEDNDIFNHLYSGVQISN 119
G R G +D+ +E++ F + + S
Sbjct: 190 QKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSA 239
Score = 25.9 bits (56), Expect = 5.6
Identities = 11/105 (10%), Positives = 25/105 (23%), Gaps = 17/105 (16%)
Query: 22 GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAP---- 77
G + + + G + + ++ EN W + A
Sbjct: 187 GPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNG 246
Query: 78 ------------VLRRNRIHSGKQVGVYFYDN-GHGKLEDNDIFN 109
+ R+ G +N G + +N +
Sbjct: 247 FKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYK 291
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.50
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 50 EK-GVGLIEEN-EVYANTLAGVWITTGSAPVL 79
EK + ++ + ++YA SAP L
Sbjct: 18 EKQALKKLQASLKLYA---------DDSAPAL 40
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 25.4 bits (55), Expect = 6.7
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 59 NEVYANTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYD 96
E Y GV++ + +P+++ G+ G+ D
Sbjct: 139 TEPYFYE--GVFMVSYVSPIMK-----EGEFAGIGGVD 169
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural
genomics, montreal-kings bacterial structural genomics
initiative, BSGI; HET: PLP; 2.44A {Escherichia coli}
PDB: 3lvk_B* 1dcj_A
Length = 82
Score = 24.1 bits (53), Expect = 8.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 116 QISNETTATLDACGLRRSMPI 136
+ + TLDA GLR P+
Sbjct: 4 DLFSSPDHTLDALGLRCPEPV 24
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,151,297
Number of extensions: 122294
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 26
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)