RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy683
         (137 letters)



>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
           cedar (Juniperus ashei) [TaxId: 13101]}
          Length = 346

 Score = 27.3 bits (60), Expect = 0.58
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 1/116 (0%)

Query: 14  VHCGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITT 73
           VH GN    + +R  S  I+    IH   +  V         I    V+A     + +  
Sbjct: 99  VHLGNGGPCLFMRKVSHVILHSLHIHGC-NTSVLGDVLVSESIGVEPVHAQDGDAITMRN 157

Query: 74  GSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTATLDACG 129
            +   +  N +       +       G    N+ F + +  + + ++ T   D   
Sbjct: 158 VTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSM 213


>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
           [TaxId: 5061]}
          Length = 359

 Score = 26.3 bits (57), Expect = 1.6
 Identities = 10/115 (8%), Positives = 25/115 (21%), Gaps = 13/115 (11%)

Query: 22  GIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLI-EENEVYANTLA-----------GV 69
            I +       + H            +       +   N                    +
Sbjct: 155 AITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAI 214

Query: 70  WITTGSAPV-LRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTA 123
           ++   +  V ++ N I+          DN      +N  ++      +I      
Sbjct: 215 YLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYV 269


>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 105

 Score = 25.2 bits (55), Expect = 2.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 39 HHGQHGGVYVHEKGVGLIEENEVYANTLA 67
          HH  HG     EK + L+ E +   + LA
Sbjct: 3  HHHHHGSATRREKIIELLLEGDYSPSELA 31


>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C
           [TaxId: 556]}
          Length = 353

 Score = 25.5 bits (55), Expect = 2.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 18  NALAGIQIRTSSDPIVRHNKIHHGQHGG 45
           +A  GI I+ SSD +V++ +I +   G 
Sbjct: 100 SANFGIWIKKSSDVVVQNMRIGYLPGGA 127


>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit
           KamE, C-terminal domain {Clostridium sticklandii [TaxId:
           1511]}
          Length = 160

 Score = 23.4 bits (50), Expect = 9.3
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 88  KQVGVYFYDNGHGKLEDNDIFNHLYSGVQISNETTA 123
             +       GH  LE  ++ +    G Q++NE   
Sbjct: 37  DAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFI 72


>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 124

 Score = 23.2 bits (50), Expect = 9.3
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 104 DNDIFNHLYSGVQISNETTA 123
           D  ++  +   V+ + E T 
Sbjct: 62  DGRLYKGMAISVRTAGEETF 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,048
Number of extensions: 22074
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 10
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)