BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6834
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis
Length = 105
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 165 GSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAM 224
G+LE+ T GP S+ + I E L+S+L +F ++V D SGGCGA
Sbjct: 10 GTLEAQT-----QGPGSMV------SKSIVEERLRSMLSPQF-----LKVTDNSGGCGAA 53
Query: 225 FEIMVISPEFKGLSTVKQHMLVN 247
F ++S +F+G + + LVN
Sbjct: 54 FNAYIVSQQFEGKGLLDRQRLVN 76
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
I E L+S+L +F ++V D SGGCGA F ++S +F+G + + LVN
Sbjct: 27 IVEERLRSMLSPQF-----LKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVN 76
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 56 KAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV 114
+A+ +EV+D + C F ++V+S +F+G +++H LVN + + P+ F Q T+
Sbjct: 44 EAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVN-ECLAEELPHIHAFEQKTL 102
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 208 KAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNK 248
+A+ +EV+D + C F ++V+S +F+G +++H LVN+
Sbjct: 44 EAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNE 85
>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like
Protein From The Protozoan Parasite Plasmodium
Falciparum
Length = 108
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 192 QITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
++ E L S L+ F +E+ D S GCG F+ +++S F+ + +H LVN +
Sbjct: 27 KVIEDKLSSALKPTF-----LELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTI 79
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 40 QITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN---K 96
++ E L S L+ F +E+ D S GCG F+ +++S F+ + +H LVN K
Sbjct: 27 KVIEDKLSSALKPTF-----LELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILK 81
Query: 97 DSSSNHSPYSRNFHQTTVAYSR 118
+ N +S H T + Y +
Sbjct: 82 EELQNIHAFSMKCH-TPLEYDK 102
>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From
Ehrlichia Chaffeensis. Seattle Structural Genomics
Center For Infectious Disease Target Ehcha.10365.A
Length = 76
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLS 252
+T++ L+ +++ FP+A+ I V + G + I VIS +F+G S ++QH ++ KV L
Sbjct: 6 VTQSQLELLIRNAFPEAE-ITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYKV-LD 62
Query: 253 GIS 255
G++
Sbjct: 63 GLN 65
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+T++ L+ +++ FP+A+ I V + G + I VIS +F+G S ++QH ++ K
Sbjct: 6 VTQSQLELLIRNAFPEAE-ITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYK 59
>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein
Length = 80
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 46 LKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLV 94
++ +++ P+A+ DV G G FE V+SP F G + + +H +V
Sbjct: 11 IRKLIESGLPEARV----DVQGEDGVHFEATVVSPAFVGKAPLARHRMV 55
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 198 LKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLV 246
++ +++ P+A+ DV G G FE V+SP F G + + +H +V
Sbjct: 11 IRKLIESGLPEARV----DVQGEDGVHFEATVVSPAFVGKAPLARHRMV 55
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 69 CGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVA 115
CG F I+ P + +++K + K S H P+ R FH VA
Sbjct: 139 CGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185
>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus
Length = 123
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 190 AAQITEANLKSVLQREFPKAKSIEVQDVSGG----CGAM--FEIMVISPEFKGLSTVKQH 243
AA EA +++ L++ + +E+++ SGG G+ F + V+S F+G+S +++H
Sbjct: 23 AAGPVEAAIRAKLEQAL-SPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRH 81
Query: 244 MLVNKV 249
LV++
Sbjct: 82 RLVHEA 87
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 38 AAQITEANLKSVLQREFPKAKSIEVQDVSGG----CGAM--FEIMVISPEFKGLSTVKQH 91
AA EA +++ L++ + +E+++ SGG G+ F + V+S F+G+S +++H
Sbjct: 23 AAGPVEAAIRAKLEQAL-SPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRH 81
Query: 92 MLVNK 96
LV++
Sbjct: 82 RLVHE 86
>pdb|1W36|D Chain D, Recbcd:dna Complex
pdb|1W36|G Chain G, Recbcd:dna Complex
pdb|3K70|D Chain D, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|G Chain G, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 608
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 176 WAGPKSLARYCTQ--NAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVIS 231
W +++AR+ + +A ++ EA L L + FP + I Q V+ I VIS
Sbjct: 113 WCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVIS 170
>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
pdb|3TR3|B Chain B, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
Length = 82
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 39 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLV 94
A +T ++K ++ +++ I + G G FE +V+ P F+G + + +H LV
Sbjct: 3 AXVTTHDIKQWIETGLSESRVISAE----GDGHHFEAVVLCPTFEGQTALTRHRLV 54
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 191 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLV 246
A +T ++K ++ +++ I + G G FE +V+ P F+G + + +H LV
Sbjct: 3 AXVTTHDIKQWIETGLSESRVISAE----GDGHHFEAVVLCPTFEGQTALTRHRLV 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,084,479
Number of Sequences: 62578
Number of extensions: 279931
Number of successful extensions: 1030
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 18
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)