BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6834
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZ84|BOLA3_BOVIN BolA-like protein 3 OS=Bos taurus GN=BOLA3 PE=3 SV=1
Length = 110
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 48/133 (36%)
Query: 182 LARYCTQNAAQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLST 239
L + + A TEA LK +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK T
Sbjct: 21 LLHWAQRMFASQTEAELKVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRT 80
Query: 240 VKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAE 299
V+QH +VN+ ALK E
Sbjct: 81 VQQHQMVNQ----------------------------------------------ALKEE 94
Query: 300 IKEMHGLRIHTDI 312
IK MHGLRI T +
Sbjct: 95 IKGMHGLRIFTSV 107
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 30 LARYCTQNAAQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLST 87
L + + A TEA LK +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK T
Sbjct: 21 LLHWAQRMFASQTEAELKVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRT 80
Query: 88 VKQHMLVNK 96
V+QH +VN+
Sbjct: 81 VQQHQMVNQ 89
>sp|Q8CEI1|BOLA3_MOUSE BolA-like protein 3 OS=Mus musculus GN=Bola3 PE=2 SV=1
Length = 110
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 60/131 (45%), Gaps = 49/131 (37%)
Query: 185 YCTQNA-AQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVK 241
+C Q A TE LK VL+ +FP+A +I+V D+SGGCGAM+EI + S EFK TV+
Sbjct: 23 HCAQRMFASQTEGELKVTQVLKEKFPRATAIQVTDISGGCGAMYEIKIESEEFKEKRTVQ 82
Query: 242 QHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIK 301
QH +VN+ ALK EIK
Sbjct: 83 QHQMVNQ----------------------------------------------ALKEEIK 96
Query: 302 EMHGLRIHTDI 312
MHGLRI T +
Sbjct: 97 GMHGLRIFTSV 107
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 33 YCTQNA-AQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVK 89
+C Q A TE LK VL+ +FP+A +I+V D+SGGCGAM+EI + S EFK TV+
Sbjct: 23 HCAQRMFASQTEGELKVTQVLKEKFPRATAIQVTDISGGCGAMYEIKIESEEFKEKRTVQ 82
Query: 90 QHMLVNK 96
QH +VN+
Sbjct: 83 QHQMVNQ 89
>sp|Q53S33|BOLA3_HUMAN BolA-like protein 3 OS=Homo sapiens GN=BOLA3 PE=1 SV=1
Length = 107
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 57/121 (47%), Gaps = 48/121 (39%)
Query: 194 TEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL 251
TE L+ +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK TV+QH +VN+
Sbjct: 30 TEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQ--- 86
Query: 252 SGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTD 311
ALK EIKEMHGLRI T
Sbjct: 87 -------------------------------------------ALKEEIKEMHGLRIFTS 103
Query: 312 I 312
+
Sbjct: 104 V 104
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 42 TEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
TE L+ +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK TV+QH +VN+
Sbjct: 30 TEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQ 86
>sp|P39724|AIM1_YEAST Altered inheritance of mitochondria protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=AIM1 PE=1
SV=1
Length = 118
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 185 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHM 244
Y TQ A E + LQ+E + + +VQDVSGGCG+MF I + S +F GLS +KQH
Sbjct: 29 YSTQMAMTPEEKMITDKLQQEL-EPEVCKVQDVSGGCGSMFAINITSKKFNGLSLIKQHQ 87
Query: 245 LVNKVSLSGIS 255
LVN++ IS
Sbjct: 88 LVNRILRDDIS 98
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 33 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHM 92
Y TQ A E + LQ+E + + +VQDVSGGCG+MF I + S +F GLS +KQH
Sbjct: 29 YSTQMAMTPEEKMITDKLQQEL-EPEVCKVQDVSGGCGSMFAINITSKKFNGLSLIKQHQ 87
Query: 93 LVNK 96
LVN+
Sbjct: 88 LVNR 91
>sp|O14280|YETB_SCHPO Uncharacterized bolA-like protein C8C9.11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC8C9.11 PE=3 SV=2
Length = 84
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 60 IEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
IE+QD+SGGCG FE++++SP F+G ST+ +H LVN
Sbjct: 20 IEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVN 55
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 212 IEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 247
IE+QD+SGGCG FE++++SP F+G ST+ +H LVN
Sbjct: 20 IEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVN 55
>sp|Q9USK1|YJ2B_SCHPO Uncharacterized bolA-like protein C4B3.11c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4B3.11c PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 47/119 (39%)
Query: 195 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGI 254
E +K +L + + S+ V DVSGGCG+M+++ + S F+G +T+ QH LVN +
Sbjct: 33 ERRIKDILTEKLSPS-SLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSI----- 86
Query: 255 SYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDIE 313
LK EI+ MHGL + T++E
Sbjct: 87 -----------------------------------------LKEEIRNMHGLNLSTEVE 104
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 43 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
E +K +L + + S+ V DVSGGCG+M+++ + S F+G +T+ QH LVN
Sbjct: 33 ERRIKDILTEKLSPS-SLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVN 84
>sp|Q86HT3|Y4439_DICDI BolA-like protein DDB_G0274439 OS=Dictyostelium discoideum
GN=DDB_G0274439 PE=3 SV=1
Length = 52
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 217 VSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
+SGGCG+M++I ++SPEFKG S + QH VN++
Sbjct: 1 MSGGCGSMYKIEIVSPEFKGKSMINQHRKVNQI 33
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 65 VSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+SGGCG+M++I ++SPEFKG S + QH VN+
Sbjct: 1 MSGGCGSMYKIEIVSPEFKGKSMINQHRKVNQ 32
>sp|P53082|FRA2_YEAST Fe repressor of activation 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FRA2 PE=1 SV=1
Length = 120
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 175 QWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEF 234
QW K Y +TE L+ ++ P+ I V D+S GCG F+I+V+S F
Sbjct: 24 QWRETKRQRHY----KMPVTEQGLRERIESAIPQVYHIIVTDLSYGCGQSFDIVVVSDFF 79
Query: 235 KGLSTVKQHMLVNK 248
+G S + + VNK
Sbjct: 80 QGKSKLMRSRAVNK 93
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+TE L+ ++ P+ I V D+S GCG F+I+V+S F+G S + + VNK
Sbjct: 38 VTEQGLRERIESAIPQVYHIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNK 93
>sp|Q9H3K6|BOLA2_HUMAN BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 SV=1
Length = 86
Score = 36.2 bits (82), Expect = 0.33, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 40 QITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDS 98
+++ L+ LQR+ +A+ +EV+D + C F ++V+S +F+G +++H LVN
Sbjct: 2 ELSAEYLREKLQRDL-EAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNA-C 59
Query: 99 SSNHSPYSRNFHQTTV 114
+ P+ F Q T+
Sbjct: 60 LAEELPHIHAFEQKTL 75
Score = 35.0 bits (79), Expect = 0.80, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 192 QITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVN 247
+++ L+ LQR+ +A+ +EV+D + C F ++V+S +F+G +++H LVN
Sbjct: 2 ELSAEYLREKLQRDL-EAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVN 57
>sp|Q9KPS0|BOLA_VIBCH Protein BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
Tor Inaba N16961) GN=bolA PE=3 SV=1
Length = 106
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 41 ITEANLKSVLQREFPKA-KSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK--- 96
+ E L Q EF K ++ +V G + F++ V+S F GL V +H LVN+
Sbjct: 5 VIEKKLSDEFQPEFLKVINESDMHNVPRGSESHFKVTVVSERFAGLRPVARHRLVNQTLA 64
Query: 97 DSSSNH 102
D +NH
Sbjct: 65 DELANH 70
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 193 ITEANLKSVLQREFPKA-KSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 248
+ E L Q EF K ++ +V G + F++ V+S F GL V +H LVN+
Sbjct: 5 VIEKKLSDEFQPEFLKVINESDMHNVPRGSESHFKVTVVSERFAGLRPVARHRLVNQ 61
>sp|B2V3C3|PUR9_CLOBA Bifunctional purine biosynthesis protein PurH OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=purH PE=3
SV=1
Length = 501
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 36 QNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
Q+ I+ N V++ E A + ++ G +F +M + G + ML +
Sbjct: 138 QDVTVISNINDYEVVKNEIENAGQVSLKTKKKLAGKVFNLM---SAYDG--AIANFMLAD 192
Query: 96 KDSSSNHSPYSRNFHQTTVAYSRNFHQTTVAYSR-------NFLQLCNSKELNFRNFQQT 148
++ + S Q + Y N HQ+ YS N + N KEL++ NF+
Sbjct: 193 EEEYPEYLSVSYKKMQN-LRYGENSHQSAAVYSSTMVDGAMNTFETLNGKELSYNNFKDV 251
Query: 149 TVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLA 183
+A+ +D E + C L+ P +A
Sbjct: 252 DIAWKCANEFD--------EPACCALKHNTPCGVA 278
>sp|B2TN76|PUR9_CLOBB Bifunctional purine biosynthesis protein PurH OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=purH PE=3 SV=1
Length = 501
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 105 YSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQD 164
Y N HQ+ YS T V + N + N KEL++ NF+ +A+ +D
Sbjct: 212 YGENSHQSAAVYS----STMVDGAMNTFETLNGKELSYNNFKDVDIAWKCANEFD----- 262
Query: 165 GSLESSTCLLQWAGPKSLA 183
E + C L+ P +A
Sbjct: 263 ---EPACCALKHNTPCGVA 278
>sp|Q8BGS2|BOLA2_MOUSE BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 SV=1
Length = 86
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 52 REFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFH 110
R+ +A+ +EV+D + C F ++V+S +F+G +++H LVN + + P+ F
Sbjct: 13 RQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVN-ECLAEELPHIHAFE 71
Query: 111 QTTV 114
Q T+
Sbjct: 72 QKTL 75
Score = 32.3 bits (72), Expect = 5.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 204 REFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNK 248
R+ +A+ +EV+D + C F ++V+S +F+G +++H LVN+
Sbjct: 13 RQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNE 58
>sp|Q5R6W5|YIPF5_PONAB Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1
Length = 257
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 49/196 (25%)
Query: 67 GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSRNFHQTTVA 126
GG G + S ++ G +Q V D PY+ +Q T AY+ Q
Sbjct: 29 GGSGGPY-----SKQYAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-- 81
Query: 127 YSRNF---LQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLA 183
Y NF L +NF + Q T+ + + L + DGS+ + T L AGP
Sbjct: 82 YGNNFEDEPPLLEELGINFDHIWQKTL----TVLHPLKVADGSIMNETDL---AGPM--- 131
Query: 184 RYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSG-GCGAMFEIMVISPEFKGLSTVKQ 242
+C A + A K + V +S GC MF
Sbjct: 132 VFCLAFGATLLLAG----------KIQFGYVYGISAIGCLGMF----------------- 164
Query: 243 HMLVNKVSLSGISYKC 258
L+N +S++G+S+ C
Sbjct: 165 -CLLNLMSMTGVSFGC 179
>sp|Q969M3|YIPF5_HUMAN Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1
Length = 257
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 49/196 (25%)
Query: 67 GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSRNFHQTTVA 126
GG G + S ++ G +Q V D PY+ +Q T AY+ Q
Sbjct: 29 GGSGGPY-----SKQYAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPF-- 81
Query: 127 YSRNF---LQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLA 183
Y NF L +NF + Q T+ + + L + DGS+ + T L AGP
Sbjct: 82 YGNNFEDEPPLLEELGINFDHIWQKTL----TVLHPLKVADGSIMNETDL---AGPM--- 131
Query: 184 RYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSG-GCGAMFEIMVISPEFKGLSTVKQ 242
+C A + A K + V +S GC MF
Sbjct: 132 VFCLAFGATLLLAG----------KIQFGYVYGISAIGCLGMF----------------- 164
Query: 243 HMLVNKVSLSGISYKC 258
L+N +S++G+S+ C
Sbjct: 165 -CLLNLMSMTGVSFGC 179
>sp|P09254|DUT_VZVD Deoxyuridine 5'-triphosphate nucleotidohydrolase
OS=Varicella-zoster virus (strain Dumas) GN=ORF8 PE=3
SV=1
Length = 396
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 47 KSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNH 102
K+VL+ P KSI+VQ +S + +E VI PEF +STV+Q +++DS+ H
Sbjct: 166 KNVLKHLDPIFKSIQVQPLSNS-PSNYEKPVI-PEFADISTVQQGQPLHRDSAEYH 219
>sp|A6LSB3|PUR9_CLOB8 Bifunctional purine biosynthesis protein PurH OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=purH
PE=3 SV=1
Length = 502
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 105 YSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQD 164
Y N HQT Y+ T + + N + N KEL++ NF+ +A+ +D
Sbjct: 213 YGENSHQTAAVYA----STMLDGAMNTFETLNGKELSYNNFKDVDIAWKCANEFD----- 263
Query: 165 GSLESSTCLLQWAGPKSLA 183
E + C L+ P +A
Sbjct: 264 ---EPACCALKHNTPCGVA 279
>sp|Q4JQW7|DUT_VZVO Deoxyuridine 5'-triphosphate nucleotidohydrolase
OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF8
PE=3 SV=1
Length = 396
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 47 KSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNH 102
K+VL+ P KSI+VQ +S + +E VIS EF +STV+Q +++DS+ H
Sbjct: 166 KNVLKHLDPIFKSIQVQPLSNS-PSNYEKPVIS-EFADISTVQQGQPLHRDSAEYH 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,819,170
Number of Sequences: 539616
Number of extensions: 3566554
Number of successful extensions: 9203
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9178
Number of HSP's gapped (non-prelim): 40
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)