Query psy6834
Match_columns 313
No_of_seqs 299 out of 2295
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 19:38:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3348|consensus 99.9 9.7E-26 2.1E-30 179.4 8.5 75 191-312 1-75 (85)
2 PRK11628 transcriptional regul 99.9 1.9E-23 4.1E-28 172.7 7.9 77 41-118 2-84 (105)
3 KOG3348|consensus 99.9 5.8E-23 1.3E-27 163.5 6.6 78 39-118 1-78 (85)
4 COG0271 BolA Stress-induced mo 99.9 1.9E-22 4E-27 163.0 8.4 76 42-118 4-86 (90)
5 PF01722 BolA: BolA-like prote 99.9 4.4E-22 9.6E-27 155.7 6.4 68 49-118 1-75 (76)
6 COG5007 Predicted transcriptio 99.9 5.6E-22 1.2E-26 156.3 6.7 73 41-118 1-74 (80)
7 COG0271 BolA Stress-induced mo 99.8 4.8E-21 1.1E-25 154.8 8.9 74 192-312 2-83 (90)
8 PRK11628 transcriptional regul 99.8 1.1E-20 2.4E-25 156.2 8.8 72 192-264 1-87 (105)
9 PF01722 BolA: BolA-like prote 99.8 2.1E-19 4.5E-24 140.6 7.1 64 201-312 1-72 (76)
10 KOG2313|consensus 99.8 4.5E-19 9.7E-24 144.9 8.4 81 37-118 6-99 (100)
11 COG5007 Predicted transcriptio 99.7 6.8E-18 1.5E-22 133.3 5.9 68 193-265 1-78 (80)
12 KOG2313|consensus 99.7 2.1E-16 4.6E-21 129.3 8.3 58 190-248 7-76 (100)
13 TIGR02174 CXXU_selWTH selT/sel 38.0 82 0.0018 24.1 4.9 44 184-229 4-47 (72)
14 COG1004 Ugd Predicted UDP-gluc 32.0 46 0.001 34.3 3.4 54 119-174 211-264 (414)
15 PF00984 UDPG_MGDP_dh: UDP-glu 24.7 47 0.001 27.0 1.7 53 120-174 14-66 (96)
16 TIGR02174 CXXU_selWTH selT/sel 24.3 1.9E+02 0.0041 22.1 4.9 43 33-77 5-47 (72)
No 1
>KOG3348|consensus
Probab=99.93 E-value=9.7e-26 Score=179.39 Aligned_cols=75 Identities=44% Similarity=0.771 Sum_probs=72.0
Q ss_pred ccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhhh
Q psy6834 191 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSA 270 (313)
Q Consensus 191 m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~~ 270 (313)
|++.++.|+++|+++| .|++|+|+|+|||||++|+|.|||+.|+||++|+|||+||+
T Consensus 1 m~~~e~~l~~~L~~~l-~p~~v~V~D~SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~---------------------- 57 (85)
T KOG3348|consen 1 MTVTEERLEELLTEAL-EPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNS---------------------- 57 (85)
T ss_pred CcchHHHHHHHHHhhc-CceEEEEEEcCCCccceEEEEEEccccCChHHHHHHHHHHH----------------------
Confidence 5678999999999999 69999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccccccCCccchHHHHHHHhhhhceeeeecc
Q psy6834 271 LKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDI 312 (313)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 312 (313)
+|++||++||||+++|..
T Consensus 58 ------------------------~L~Eeik~iHalt~kt~t 75 (85)
T KOG3348|consen 58 ------------------------ILAEEIKEIHALTIKTYT 75 (85)
T ss_pred ------------------------HHHHHHHHHhhheeeecC
Confidence 999999999999999975
No 2
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.89 E-value=1.9e-23 Score=172.68 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=72.3
Q ss_pred chHHHHHHHHhhhCCCCceEEEEecc------CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834 41 ITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV 114 (313)
Q Consensus 41 ~~~eeI~~kLq~~lp~~~~VeV~D~S------gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~ 114 (313)
+..++|+++|+.+|+ +.+|+|+|+| +|+|+||+|+|||+.|+||++|+|||+||++|+++|.++||||+|+|+
T Consensus 2 m~~~~I~~~L~~~l~-~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHALsi~t~ 80 (105)
T PRK11628 2 MIREQIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTY 80 (105)
T ss_pred CcHHHHHHHHHhhCC-CcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccceeeecC
Confidence 478999999999998 4579999999 478999999999999999999999999999999999988999999999
Q ss_pred cccc
Q psy6834 115 AYSR 118 (313)
Q Consensus 115 t~s~ 118 (313)
||+|
T Consensus 81 tp~E 84 (105)
T PRK11628 81 TIKE 84 (105)
T ss_pred CHHH
Confidence 9987
No 3
>KOG3348|consensus
Probab=99.88 E-value=5.8e-23 Score=163.54 Aligned_cols=78 Identities=32% Similarity=0.563 Sum_probs=74.7
Q ss_pred CcchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834 39 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR 118 (313)
Q Consensus 39 ~~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~ 118 (313)
|++.++.|+++|++++ .|++|+|+|.|||||+.|.|+|||+.|+||++|+|||+||++|+++|++ |||++++|.|+.+
T Consensus 1 m~~~e~~l~~~L~~~l-~p~~v~V~D~SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~-iHalt~kt~t~~~ 78 (85)
T KOG3348|consen 1 MTVTEERLEELLTEAL-EPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKE-IHALTIKTYTPEE 78 (85)
T ss_pred CcchHHHHHHHHHhhc-CceEEEEEEcCCCccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHH-HhhheeeecChhh
Confidence 5678999999999999 5899999999999999999999999999999999999999999999997 9999999999887
No 4
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-22 Score=162.98 Aligned_cols=76 Identities=25% Similarity=0.366 Sum_probs=71.0
Q ss_pred hHHHHHHHHhhhCCCCceEEEEeccC-------CCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834 42 TEANLKSVLQREFPKAKSIEVQDVSG-------GCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV 114 (313)
Q Consensus 42 ~~eeI~~kLq~~lp~~~~VeV~D~Sg-------G~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~ 114 (313)
..++|+++|+++|+ |..++|.|+|+ |||+||+|+|||+.|+|+|+|+|||+||++|+|+|.++||||++.|+
T Consensus 4 ~~~~Ie~~l~~~f~-p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t~ 82 (90)
T COG0271 4 QRERIEKKLRAAFP-PSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHTY 82 (90)
T ss_pred cHHHHHHHHHhcCC-CceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeEeEee
Confidence 34789999999998 56799999995 69999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy6834 115 AYSR 118 (313)
Q Consensus 115 t~s~ 118 (313)
|+.|
T Consensus 83 t~~e 86 (90)
T COG0271 83 TPEE 86 (90)
T ss_pred ccch
Confidence 8875
No 5
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.86 E-value=4.4e-22 Score=155.67 Aligned_cols=68 Identities=32% Similarity=0.498 Sum_probs=60.8
Q ss_pred HHhhhCCCCceEEEEecc-------CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834 49 VLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR 118 (313)
Q Consensus 49 kLq~~lp~~~~VeV~D~S-------gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~ 118 (313)
||++.|| +.+|+|+|+| +| |+||+|+|||+.|+|||+|+|||+||++|+++|.++||||+|+|.||+|
T Consensus 1 Kl~~~l~-~~~l~V~d~S~~H~~h~~g-~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAlsi~t~tp~E 75 (76)
T PF01722_consen 1 KLKAALP-PTHLEVEDESHKHAGHAGG-GSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALSIKTYTPEE 75 (76)
T ss_dssp HHHHHHT-TSEEEEEE-SSSSSS-CCS-SSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEEEEEE-HHH
T ss_pred ChhHhCC-CcEEEEEECcccccCCCCC-CceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCCccc
Confidence 6788897 6679999999 45 9999999999999999999999999999999999899999999999988
No 6
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.86 E-value=5.6e-22 Score=156.29 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=69.3
Q ss_pred chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCc-ccceeeeecccccc
Q psy6834 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSP-YSRNFHQTTVAYSR 118 (313)
Q Consensus 41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~-~IHAL~i~T~t~s~ 118 (313)
++.++|++.|+++|| +++++|+ |+|+||.+++||+.|+|||+|+|||+||+.|.++|.+ .||||+|+|+||+|
T Consensus 1 M~~e~Ik~ll~~~L~-~e~v~V~----Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsikt~Tp~e 74 (80)
T COG5007 1 MDNEEIKSLLENALP-LEEVEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAE 74 (80)
T ss_pred CCHHHHHHHHHhcCC-ccEEEEe----cCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEeeecCHHH
Confidence 467999999999998 6679998 8999999999999999999999999999999999995 99999999999998
No 7
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.84 E-value=4.8e-21 Score=154.77 Aligned_cols=74 Identities=35% Similarity=0.593 Sum_probs=67.9
Q ss_pred cccHHHHHHHHhhhCCCCceEEEEeCCC-------CCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhh
Q psy6834 192 QITEANLKSVLQREFPKAKSIEVQDVSG-------GCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKS 264 (313)
Q Consensus 192 ~~~e~~I~~kL~~~Lp~a~~v~V~D~Sg-------GcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~ 264 (313)
.+..++|+++|+++|+ |..++|.|+|+ |||+||+|.|||+.|+|||+|+|||+||.
T Consensus 2 ~i~~~~Ie~~l~~~f~-p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~---------------- 64 (90)
T COG0271 2 SIQRERIEKKLRAAFP-PSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYS---------------- 64 (90)
T ss_pred CccHHHHHHHHHhcCC-CceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHH----------------
Confidence 3445789999999996 77899999995 79999999999999999999999999999
Q ss_pred hhhhhhhhhhcccCCCCccccccCCccchHHHHHHHhh-hhceeeeecc
Q psy6834 265 RILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKE-MHGLRIHTDI 312 (313)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~ 312 (313)
+|++||.. +|||.|+|..
T Consensus 65 ------------------------------~L~del~~~iHALal~t~t 83 (90)
T COG0271 65 ------------------------------ALKDELSGGIHALALHTYT 83 (90)
T ss_pred ------------------------------HHHHHHhccceeeEeEeec
Confidence 99999987 9999999974
No 8
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.83 E-value=1.1e-20 Score=156.25 Aligned_cols=72 Identities=18% Similarity=0.423 Sum_probs=63.1
Q ss_pred cccHHHHHHHHhhhCCCCceEEEEeCC------CCCCceeEEEEECcCCCCCChHHHHHHHHHHhh-------hhhhhhc
Q psy6834 192 QITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL-------SGISYKC 258 (313)
Q Consensus 192 ~~~e~~I~~kL~~~Lp~a~~v~V~D~S------gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~-------haisikT 258 (313)
+|..++|+++|+++|+ +.+|+|+|+| +|||+||+|.|||+.|+||++|+||||||++|. |+++|+|
T Consensus 1 mm~~~~I~~~L~~~l~-~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHALsi~t 79 (105)
T PRK11628 1 MMIREQIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHT 79 (105)
T ss_pred CCcHHHHHHHHHhhCC-CcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccceeeec
Confidence 3577999999999996 6789999999 578999999999999999999999999999874 6667777
Q ss_pred h--hhhhh
Q psy6834 259 N--RHWKS 264 (313)
Q Consensus 259 ~--~eW~~ 264 (313)
+ +||++
T Consensus 80 ~tp~Ew~~ 87 (105)
T PRK11628 80 YTIKEWEG 87 (105)
T ss_pred CCHHHHHH
Confidence 6 58875
No 9
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.79 E-value=2.1e-19 Score=140.62 Aligned_cols=64 Identities=48% Similarity=0.783 Sum_probs=56.7
Q ss_pred HHhhhCCCCceEEEEeCC-------CCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhhhhhh
Q psy6834 201 VLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKA 273 (313)
Q Consensus 201 kL~~~Lp~a~~v~V~D~S-------gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~~~~~ 273 (313)
||+++|+ +.+|+|.|+| +| |+||+|.|||+.|+|||+|+||||||+
T Consensus 1 Kl~~~l~-~~~l~V~d~S~~H~~h~~g-~sHf~i~IvS~~F~g~s~i~rhr~V~~------------------------- 53 (76)
T PF01722_consen 1 KLKAALP-PTHLEVEDESHKHAGHAGG-GSHFKIIIVSDEFEGKSRIKRHRLVYK------------------------- 53 (76)
T ss_dssp HHHHHHT-TSEEEEEE-SSSSSS-CCS-SSEEEEEEECGGGTTS-HHHHHHHHHH-------------------------
T ss_pred ChhHhCC-CcEEEEEECcccccCCCCC-CceEEEEEEcHHhCCCCHHHHHHHHHH-------------------------
Confidence 6889995 7789999999 55 999999999999999999999999999
Q ss_pred hcccCCCCccccccCCccchHHHHHHHhh-hhceeeeecc
Q psy6834 274 VVHDHDRPKTNKQYDLRPSKMALKAEIKE-MHGLRIHTDI 312 (313)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~ 312 (313)
+|++||+. +|+|+|+|.+
T Consensus 54 ---------------------~L~~~i~~~iHAlsi~t~t 72 (76)
T PF01722_consen 54 ---------------------ALKDEIKDGIHALSIKTYT 72 (76)
T ss_dssp ---------------------HTHHHHGCTCSEEEEEEE-
T ss_pred ---------------------HHHHHhcCCceEEEEEcCC
Confidence 99999987 9999999864
No 10
>KOG2313|consensus
Probab=99.78 E-value=4.5e-19 Score=144.94 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=75.0
Q ss_pred ccCcchHHHHHHHHhhhCCCCceEEEEeccC---------C---CcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCc
Q psy6834 37 NAAQITEANLKSVLQREFPKAKSIEVQDVSG---------G---CGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSP 104 (313)
Q Consensus 37 s~~~~~~eeI~~kLq~~lp~~~~VeV~D~Sg---------G---~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~ 104 (313)
...++.+..|+++|..+|. +.++++.|+|+ | +++||+|.|||++|+|+++|+||||||++|+||+++
T Consensus 6 ~~~g~~~~ri~~~l~~~lk-p~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~ 84 (100)
T KOG2313|consen 6 GIYGPRESRIREKLFEALK-PLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAG 84 (100)
T ss_pred cccCcHHHHHHHHhHhhcC-cceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999996 66899999994 2 789999999999999999999999999999999999
Q ss_pred -ccceeeeecccccc
Q psy6834 105 -YSRNFHQTTVAYSR 118 (313)
Q Consensus 105 -~IHAL~i~T~t~s~ 118 (313)
++|||+|.+.||+|
T Consensus 85 ~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 85 TGVHALSIMAKTPSE 99 (100)
T ss_pred cceeEEEeeccCCCC
Confidence 79999999999998
No 11
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.72 E-value=6.8e-18 Score=133.26 Aligned_cols=68 Identities=31% Similarity=0.586 Sum_probs=61.9
Q ss_pred ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh--------hhhhhhch--hhh
Q psy6834 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL--------SGISYKCN--RHW 262 (313)
Q Consensus 193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~--------haisikT~--~eW 262 (313)
|+.++|++.|++.|| .++++|+ |+|+||.+++||+.|+|||+|+|||+||+.|. |++||||+ +||
T Consensus 1 M~~e~Ik~ll~~~L~-~e~v~V~----Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsikt~Tp~eW 75 (80)
T COG5007 1 MDNEEIKSLLENALP-LEEVEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAEW 75 (80)
T ss_pred CCHHHHHHHHHhcCC-ccEEEEe----cCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEeeecCHHHh
Confidence 567999999999997 5679996 79999999999999999999999999999984 78899998 699
Q ss_pred hhh
Q psy6834 263 KSR 265 (313)
Q Consensus 263 ~~~ 265 (313)
+++
T Consensus 76 ~~~ 78 (80)
T COG5007 76 ARD 78 (80)
T ss_pred hhc
Confidence 983
No 12
>KOG2313|consensus
Probab=99.66 E-value=2.1e-16 Score=129.32 Aligned_cols=58 Identities=31% Similarity=0.441 Sum_probs=52.3
Q ss_pred cccccHHHHHHHHhhhCCCCceEEEEeCCC---------C---CCceeEEEEECcCCCCCChHHHHHHHHH
Q psy6834 190 AAQITEANLKSVLQREFPKAKSIEVQDVSG---------G---CGAMFEIMVISPEFKGLSTVKQHMLVNK 248 (313)
Q Consensus 190 ~m~~~e~~I~~kL~~~Lp~a~~v~V~D~Sg---------G---cGsHF~I~IVS~~F~Gks~VkRHRlVy~ 248 (313)
...+.+..|+++|..+|. +..++++|+|+ | .++||+|.|||++|+|+++|+||||||.
T Consensus 7 ~~g~~~~ri~~~l~~~lk-p~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~ 76 (100)
T KOG2313|consen 7 IYGPRESRIREKLFEALK-PLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYK 76 (100)
T ss_pred ccCcHHHHHHHHhHhhcC-cceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHH
Confidence 344578999999999995 78899999994 2 7899999999999999999999999999
No 13
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=38.04 E-value=82 Score=24.13 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=32.9
Q ss_pred cccccccccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEE
Q psy6834 184 RYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMV 229 (313)
Q Consensus 184 ~~~t~~~m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~I 229 (313)
-||++=-.......+.+.|.+.||+. .+.+...- +.+.-|+|.+
T Consensus 4 eyC~~C~y~~Ra~~l~q~L~~~Fp~~-~v~~~~~~-~~~G~Fev~~ 47 (72)
T TIGR02174 4 EYCGSCGYKPRAAWLKQELLEEFPDL-EIEGENTP-PTTGAFEVTV 47 (72)
T ss_pred EECCCCCChHHHHHHHHHHHHHCCCC-eeEEeeec-CCCcEEEEEE
Confidence 36666556667899999999999875 47776654 3466899977
No 14
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=32.01 E-value=46 Score=34.30 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=40.2
Q ss_pred chhhhhHHhhchHHhhhcccccchhhhhcccccccccccccccccCCccccccccc
Q psy6834 119 NFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLL 174 (313)
Q Consensus 119 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~ 174 (313)
-|++|++.|-+-+-.+|.+-.+|-+.-.+ |..+-.|||+ -.++.|.=-++.|+|
T Consensus 211 afLAtKIsFiNEia~ice~~g~D~~~V~~-gIGlD~RIG~-~fl~aG~GyGGsCfP 264 (414)
T COG1004 211 AFLATKISFINEIANICEKVGADVKQVAE-GIGLDPRIGN-HFLNAGFGYGGSCFP 264 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HcCCCchhhH-hhCCCCCCCCCcCCc
Confidence 38999999999999999999999886554 4455555553 245666666777776
No 15
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=24.73 E-value=47 Score=27.02 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=34.2
Q ss_pred hhhhhHHhhchHHhhhcccccchhhhhcccccccccccccccccCCccccccccc
Q psy6834 120 FHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLL 174 (313)
Q Consensus 120 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~ 174 (313)
|.++.+.|-+-|-.+|++-.+|++.--..- ..-.++| ...+.-|--.++.|||
T Consensus 14 ~~a~~iaf~Nel~~lce~~giD~~~V~~~~-~~d~ri~-~~~~~pg~g~GG~Clp 66 (96)
T PF00984_consen 14 FRATKIAFANELARLCEKLGIDVYEVIEAA-NTDPRIG-PHYLRPGPGFGGSCLP 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSBHHHHHHHH-HTSTTTT-SSS-S-SSS--SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-ccCcccc-cccCCCCCCCCCcchh
Confidence 789999999999999999999988655432 2234555 2233444445666666
No 16
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=24.30 E-value=1.9e+02 Score=22.10 Aligned_cols=43 Identities=33% Similarity=0.467 Sum_probs=32.2
Q ss_pred hhccccCcchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEE
Q psy6834 33 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMV 77 (313)
Q Consensus 33 f~~~s~~~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~V 77 (313)
||++=--.+...++.+.|.+.||+. .+.+...- +.+.-|.|.+
T Consensus 5 yC~~C~y~~Ra~~l~q~L~~~Fp~~-~v~~~~~~-~~~G~Fev~~ 47 (72)
T TIGR02174 5 YCGSCGYKPRAAWLKQELLEEFPDL-EIEGENTP-PTTGAFEVTV 47 (72)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCC-eeEEeeec-CCCcEEEEEE
Confidence 5666556678899999999999976 37776543 4577899876
Done!