Query psy6834
Match_columns 313
No_of_seqs 299 out of 2295
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:39:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v60_A BOLA1, riken cDNA 18100 99.9 1.6E-24 5.3E-29 182.5 8.7 86 33-119 18-109 (123)
2 2kdn_A Putative uncharacterize 99.9 2E-24 6.7E-29 178.4 8.1 76 41-118 24-99 (108)
3 2kz0_A BOLA family protein; BO 99.9 2E-24 6.8E-29 168.1 7.2 73 39-116 4-76 (76)
4 3o2e_A BOLA-like protein; ssgc 99.9 2.1E-24 7E-29 177.4 7.3 77 40-118 22-98 (105)
5 2dhm_A Protein BOLA; stationar 99.9 3.3E-24 1.1E-28 176.5 6.9 77 41-118 9-91 (107)
6 1v9j_A BOLA-like protein riken 99.9 3.3E-24 1.1E-28 178.2 6.2 78 39-118 28-106 (113)
7 1xs3_A Hypothetical protein XC 99.9 1.3E-23 4.5E-28 164.7 8.2 75 40-118 5-79 (80)
8 1v9j_A BOLA-like protein riken 99.9 9E-24 3.1E-28 175.6 6.4 72 172-250 15-87 (113)
9 3tr3_A BOLA; cellular processe 99.9 2.9E-23 9.9E-28 163.7 8.0 74 41-118 5-78 (82)
10 2kdn_A Putative uncharacterize 99.9 3.9E-23 1.3E-27 170.6 9.1 55 193-248 24-78 (108)
11 3o2e_A BOLA-like protein; ssgc 99.9 2.5E-23 8.6E-28 171.0 7.0 57 194-251 24-80 (105)
12 2kz0_A BOLA family protein; BO 99.9 1.8E-23 6.2E-28 162.7 5.5 73 190-312 3-75 (76)
13 1ny8_A Protein YRBA; structure 99.9 2.6E-22 8.8E-27 162.8 4.9 73 41-118 6-79 (97)
14 2dhm_A Protein BOLA; stationar 99.9 9.9E-22 3.4E-26 161.8 8.3 71 193-264 9-94 (107)
15 1v60_A BOLA1, riken cDNA 18100 99.8 2.7E-21 9.4E-26 162.7 10.5 60 190-250 23-88 (123)
16 1xs3_A Hypothetical protein XC 99.8 1.2E-21 4E-26 153.7 5.9 72 191-312 4-76 (80)
17 3tr3_A BOLA; cellular processe 99.8 7.9E-21 2.7E-25 149.8 6.6 55 193-251 5-59 (82)
18 1ny8_A Protein YRBA; structure 99.8 7.6E-20 2.6E-24 148.3 6.9 67 193-264 6-82 (97)
No 1
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.91 E-value=1.6e-24 Score=182.46 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=78.1
Q ss_pred hhccccCcchHHHHHHHHhhhCCCCceEEEEeccC------CCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCccc
Q psy6834 33 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYS 106 (313)
Q Consensus 33 f~~~s~~~~~~eeI~~kLq~~lp~~~~VeV~D~Sg------G~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~I 106 (313)
+.+....++.+++|+++|+++|+ +.+|+|+|+|+ |||+||+|+|||+.|+||++|+|||+||++|+++|++.|
T Consensus 18 ~~~~~~~~~~~~~I~~~L~~~l~-p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~I 96 (123)
T 1v60_A 18 SAGSAAAGPVEAAIRAKLEQALS-PEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPV 96 (123)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-CSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTC
T ss_pred ccCCCCCCcHHHHHHHHHHhhCC-CeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 33344567899999999999998 56799999995 899999999999999999999999999999999999889
Q ss_pred ceeeeeccccccc
Q psy6834 107 RNFHQTTVAYSRN 119 (313)
Q Consensus 107 HAL~i~T~t~s~~ 119 (313)
|||+|+|+||+|.
T Consensus 97 HALsi~t~TP~Ew 109 (123)
T 1v60_A 97 HALAIQAKTPAQW 109 (123)
T ss_dssp SEEEEEEECTTTT
T ss_pred ceeEeEecCHHHH
Confidence 9999999999983
No 2
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.90 E-value=2e-24 Score=178.35 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=72.9
Q ss_pred chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR 118 (313)
Q Consensus 41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~ 118 (313)
++.++|+++|+++|+ +.+|+|+|+|+|||+||+|+|||+.|+||++|+|||+||++|+++|+. ||||+|+|+||+|
T Consensus 24 m~~~~I~~~L~~~l~-p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-IHALsi~t~TP~E 99 (108)
T 2kdn_A 24 CIQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-IHAFSMKCHTPLE 99 (108)
T ss_dssp SHHHHHHHHHHHHHC-CSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-CSCEEEEEECHHH
T ss_pred CcHHHHHHHHHhhCC-CcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-CceEEEEecChHH
Confidence 588999999999998 567999999999999999999999999999999999999999999997 9999999999988
No 3
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.90 E-value=2e-24 Score=168.12 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=68.2
Q ss_pred CcchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccc
Q psy6834 39 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAY 116 (313)
Q Consensus 39 ~~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~ 116 (313)
|+++.++|+++|+++|+ +.+++|+|+| |||+||+|+|||+.|+||++|+|||+||++|+++ .||||+++|+||
T Consensus 4 M~m~~~~I~~~L~~~l~-~~~l~V~d~S-G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iHALsi~t~tp 76 (76)
T 2kz0_A 4 MTVTQSQLELLIRNAFP-EAEITVTSLV-GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIHAIQIQTGCK 76 (76)
T ss_dssp SSCTTHHHHHHHHHHCT-TEEEEEECCS-STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCCSSSEEECCC
T ss_pred CcccHHHHHHHHHhhCC-CcEEEEEECC-CCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC---CceEEEEEEeCC
Confidence 45678999999999998 5679999999 7899999999999999999999999999999999 699999999886
No 4
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.90 E-value=2.1e-24 Score=177.44 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=73.3
Q ss_pred cchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834 40 QITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR 118 (313)
Q Consensus 40 ~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~ 118 (313)
+...++|+++|+++|+ +.+|+|+|+|+|||+||+|+|||+.|+||++|+|||+||++|+++|+ .||||+++|+||+|
T Consensus 22 M~~~~~I~~kL~~~l~-p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IHALsi~t~TP~E 98 (105)
T 3o2e_A 22 MVSKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIHAFTMKCLTPGE 98 (105)
T ss_dssp CCCHHHHHHHHHHHHC-CSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEEEEEEEEECHHH
T ss_pred CcHHHHHHHHHHhhCC-CCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCceeEEEeCCHHH
Confidence 3589999999999997 56799999999999999999999999999999999999999999998 69999999999998
No 5
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=99.90 E-value=3.3e-24 Score=176.53 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=72.8
Q ss_pred chHHHHHHHHhhhCCCCceEEEEecc------CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834 41 ITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV 114 (313)
Q Consensus 41 ~~~eeI~~kLq~~lp~~~~VeV~D~S------gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~ 114 (313)
++.++|+++|+++|+ +.+|+|+|+| +|||+||+|+|||+.|+||++|+|||+||++|+++|++.||||+|+|+
T Consensus 9 ~~~~~I~~~L~~~l~-p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHALsi~t~ 87 (107)
T 2dhm_A 9 MIRERIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTY 87 (107)
T ss_dssp CHHHHHHHHHHHHTC-CSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEE
T ss_pred CHHHHHHHHHHhcCC-CcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEEEEec
Confidence 478999999999997 5679999999 489999999999999999999999999999999999988999999999
Q ss_pred cccc
Q psy6834 115 AYSR 118 (313)
Q Consensus 115 t~s~ 118 (313)
||+|
T Consensus 88 TP~E 91 (107)
T 2dhm_A 88 TIKE 91 (107)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9988
No 6
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.89 E-value=3.3e-24 Score=178.22 Aligned_cols=78 Identities=24% Similarity=0.494 Sum_probs=73.8
Q ss_pred CcchHHHHHHHHhhhCCCCceEEEEecc-CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeeccccc
Q psy6834 39 AQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYS 117 (313)
Q Consensus 39 ~~~~~eeI~~kLq~~lp~~~~VeV~D~S-gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s 117 (313)
|.++.++|+++|+++|+ +.+|+|+|+| +|||+||+|+|||+.|+||++|+|||+||++|+++|+. ||||+|+|+||+
T Consensus 28 M~m~~~~I~~~L~~~l~-p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IHALsi~t~TP~ 105 (113)
T 1v9j_A 28 MELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAFEQKTLTPE 105 (113)
T ss_dssp SSSCHHHHHHHHHHHHT-CSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSEEEEEECHH
T ss_pred ccCcHHHHHHHHHhhCC-CcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-CceEEEEecChH
Confidence 55789999999999998 5679999999 68999999999999999999999999999999999997 999999999998
Q ss_pred c
Q psy6834 118 R 118 (313)
Q Consensus 118 ~ 118 (313)
|
T Consensus 106 E 106 (113)
T 1v9j_A 106 Q 106 (113)
T ss_dssp H
T ss_pred H
Confidence 8
No 7
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.89 E-value=1.3e-23 Score=164.75 Aligned_cols=75 Identities=20% Similarity=0.378 Sum_probs=69.9
Q ss_pred cchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834 40 QITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR 118 (313)
Q Consensus 40 ~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~ 118 (313)
+++.++|+++|+++|| +.+++|+ ||||+||+|+|||+.|+||++|+|||+||++|+++|++.||||+++|+||+|
T Consensus 5 mm~~~~I~~~L~~~l~-~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHALsi~t~Tp~E 79 (80)
T 1xs3_A 5 PLDAETIRKLIESGLP-EARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE 79 (80)
T ss_dssp CCHHHHHHHHHHHHSS-SCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEEEECGGG
T ss_pred cCCHHHHHHHHHhhCC-CcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceEEEEecCCCC
Confidence 4578999999999998 5679998 4489999999999999999999999999999999999889999999999987
No 8
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.89 E-value=9e-24 Score=175.62 Aligned_cols=72 Identities=26% Similarity=0.521 Sum_probs=62.3
Q ss_pred ccccccCCCccccccccccccccHHHHHHHHhhhCCCCceEEEEeCC-CCCCceeEEEEECcCCCCCChHHHHHHHHHHh
Q psy6834 172 CLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVS 250 (313)
Q Consensus 172 cl~~~~~~~~~~~~~t~~~m~~~e~~I~~kL~~~Lp~a~~v~V~D~S-gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L 250 (313)
.-++|-|+.+.. .|.|.+++|+++|+++|+ |.+|+|+|+| +|||+||+|.|||+.|+||++|+|||+||++|
T Consensus 15 ~~~~~~~~~~~~------~M~m~~~~I~~~L~~~l~-p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL 87 (113)
T 1v9j_A 15 ASLVPRGSEGAA------TMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87 (113)
T ss_dssp CCCCSSCCCCSS------SSSSCHHHHHHHHHHHHT-CSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHT
T ss_pred cceeeccCcccc------cccCcHHHHHHHHHhhCC-CcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHH
Confidence 345677766411 477899999999999996 6789999999 78999999999999999999999999999944
No 9
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.88 E-value=2.9e-23 Score=163.67 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=69.6
Q ss_pred chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR 118 (313)
Q Consensus 41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~ 118 (313)
++.++|+++|+++|| +.+|+|+ +|||+||+|+|||+.|+||++|+|||+||++|+++|.+.||||+++|+||+|
T Consensus 5 m~~~~I~~~L~~~l~-~~~l~V~---~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iHAL~i~t~Tp~E 78 (82)
T 3tr3_A 5 VTTHDIKQWIETGLS-ESRVISA---EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHALSLKTYTPDE 78 (82)
T ss_dssp CCHHHHHHHHHHHST-TCEEEEE---EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCSEEEEEEECHHH
T ss_pred chHHHHHHHHHhhCC-CcEEEEE---cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEEEEeCCHHH
Confidence 588999999999998 5579998 4689999999999999999999999999999999998789999999999998
No 10
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.88 E-value=3.9e-23 Score=170.60 Aligned_cols=55 Identities=25% Similarity=0.488 Sum_probs=53.1
Q ss_pred ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHH
Q psy6834 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 248 (313)
Q Consensus 193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~ 248 (313)
|.+++|+++|+++|+ |.+|+|+|+|+|||+||+|.|||+.|+||++|+||||||+
T Consensus 24 m~~~~I~~~L~~~l~-p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~ 78 (108)
T 2kdn_A 24 CIQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNT 78 (108)
T ss_dssp SHHHHHHHHHHHHHC-CSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhCC-CcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHH
Confidence 788999999999996 6789999999999999999999999999999999999999
No 11
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.88 E-value=2.5e-23 Score=170.98 Aligned_cols=57 Identities=28% Similarity=0.541 Sum_probs=53.7
Q ss_pred cHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh
Q psy6834 194 TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL 251 (313)
Q Consensus 194 ~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~ 251 (313)
.+++|+++|+++|+ |.+|+|+|+|+|||+||+|.|||+.|+||++|+|||+||++|.
T Consensus 24 ~~~~I~~kL~~~l~-p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~ 80 (105)
T 3o2e_A 24 SKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIA 80 (105)
T ss_dssp CHHHHHHHHHHHHC-CSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCC-CCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHH
Confidence 78999999999996 7789999999999999999999999999999999999999554
No 12
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.88 E-value=1.8e-23 Score=162.71 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.3
Q ss_pred cccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhh
Q psy6834 190 AAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTS 269 (313)
Q Consensus 190 ~m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~ 269 (313)
.|.|.+++|+++|+++|+ +.+++|+|+| |||+||+|.|||+.|+||++|+|||+||+
T Consensus 3 ~M~m~~~~I~~~L~~~l~-~~~l~V~d~S-G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~--------------------- 59 (76)
T 2kz0_A 3 SMTVTQSQLELLIRNAFP-EAEITVTSLV-GDNNHYSIKVISSQFQGKSKLEQHRMIYK--------------------- 59 (76)
T ss_dssp CSSCTTHHHHHHHHHHCT-TEEEEEECCS-STTSCCEEEEEEGGGTTCCHHHHHHHHHH---------------------
T ss_pred cCcccHHHHHHHHHhhCC-CcEEEEEECC-CCccEEEEEEEchHhCCCCHHHHHHHHHH---------------------
Confidence 577888999999999996 6789999999 69999999999999999999999999999
Q ss_pred hhhhhcccCCCCccccccCCccchHHHHHHHhhhhceeeeecc
Q psy6834 270 ALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDI 312 (313)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 312 (313)
+|++| ++|||+|+|.+
T Consensus 60 -------------------------~L~~e--~iHALsi~t~t 75 (76)
T 2kz0_A 60 -------------------------VLDGL--NIHAIQIQTGC 75 (76)
T ss_dssp -------------------------HTTTS--CCCSSSEEECC
T ss_pred -------------------------HhccC--CceEEEEEEeC
Confidence 88888 89999999975
No 13
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.85 E-value=2.6e-22 Score=162.84 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=68.5
Q ss_pred chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccC-cccceeeeecccccc
Q psy6834 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHS-PYSRNFHQTTVAYSR 118 (313)
Q Consensus 41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~-~~IHAL~i~T~t~s~ 118 (313)
++.++|+++|+++|+ +.+|+|+ |||+||+|+|||+.|+||++|+|||+||++|+++|+ +.||||+++|+||+|
T Consensus 6 m~~~~I~~~L~~~l~-p~~l~V~----G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALsi~t~TP~E 79 (97)
T 1ny8_A 6 MENNEIQSVLMNALS-LQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE 79 (97)
T ss_dssp CCCHHHHHHHHHHHC-CSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH
T ss_pred cCHHHHHHHHHhhCC-CcEEEEE----cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEEeEecChHH
Confidence 366899999999998 5679998 799999999999999999999999999999999999 489999999999988
No 14
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=99.85 E-value=9.9e-22 Score=161.78 Aligned_cols=71 Identities=18% Similarity=0.432 Sum_probs=59.9
Q ss_pred ccHHHHHHHHhhhCCCCceEEEEeCC------CCCCceeEEEEECcCCCCCChHHHHHHHHHHhh-------hhhhhhch
Q psy6834 193 ITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL-------SGISYKCN 259 (313)
Q Consensus 193 ~~e~~I~~kL~~~Lp~a~~v~V~D~S------gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~-------haisikT~ 259 (313)
+.+++|+++|+++|+ +.+|+|+|+| +|||+||+|.|||+.|+||++|+||||||++|. |+++|+|+
T Consensus 9 ~~~~~I~~~L~~~l~-p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHALsi~t~ 87 (107)
T 2dhm_A 9 MIRERIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTY 87 (107)
T ss_dssp CHHHHHHHHHHHHTC-CSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEE
T ss_pred CHHHHHHHHHHhcCC-CcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEEEEec
Confidence 467999999999996 6789999999 489999999999999999999999999999653 34455554
Q ss_pred --hhhhh
Q psy6834 260 --RHWKS 264 (313)
Q Consensus 260 --~eW~~ 264 (313)
+||++
T Consensus 88 TP~Ew~~ 94 (107)
T 2dhm_A 88 TIKEWEG 94 (107)
T ss_dssp CHHHHHT
T ss_pred CHHHHHh
Confidence 36654
No 15
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.85 E-value=2.7e-21 Score=162.72 Aligned_cols=60 Identities=30% Similarity=0.567 Sum_probs=54.9
Q ss_pred cccccHHHHHHHHhhhCCCCceEEEEeCCC------CCCceeEEEEECcCCCCCChHHHHHHHHHHh
Q psy6834 190 AAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTVKQHMLVNKVS 250 (313)
Q Consensus 190 ~m~~~e~~I~~kL~~~Lp~a~~v~V~D~Sg------GcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L 250 (313)
...+.+++|+++|+++|+ +.+|+|+|+|+ |||+||+|.|||+.|+||++|+||||||++|
T Consensus 23 ~~~~~~~~I~~~L~~~l~-p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL 88 (123)
T 1v60_A 23 AAGPVEAAIRAKLEQALS-PEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEAL 88 (123)
T ss_dssp SSCHHHHHHHHHHHHHTC-CSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhhCC-CeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHH
Confidence 345678999999999996 77899999995 8999999999999999999999999999955
No 16
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.84 E-value=1.2e-21 Score=153.72 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=65.6
Q ss_pred ccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhhh
Q psy6834 191 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSA 270 (313)
Q Consensus 191 m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~~ 270 (313)
|.|.+++|+++|+++|+ |.+++|+ ||||+||+|.|||+.|+||++|+|||+||+
T Consensus 4 ~mm~~~~I~~~L~~~l~-~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~---------------------- 57 (80)
T 1xs3_A 4 RPLDAETIRKLIESGLP-EARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYA---------------------- 57 (80)
T ss_dssp SCCHHHHHHHHHHHHSS-SCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHH----------------------
T ss_pred ccCCHHHHHHHHHhhCC-CcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHH----------------------
Confidence 45789999999999996 6789998 569999999999999999999999999999
Q ss_pred hhhhcccCCCCccccccCCccchHHHHHHHhh-hhceeeeecc
Q psy6834 271 LKAVVHDHDRPKTNKQYDLRPSKMALKAEIKE-MHGLRIHTDI 312 (313)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~ 312 (313)
+|++||++ +|||+|+|.+
T Consensus 58 ------------------------~L~~e~~~~iHALsi~t~T 76 (80)
T 1xs3_A 58 ------------------------TLGELMGGAIHALQLKTLT 76 (80)
T ss_dssp ------------------------HTTSTTTTCCSCCEEEEEC
T ss_pred ------------------------HHHHHHcCCcceEEEEecC
Confidence 89999974 9999999864
No 17
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.82 E-value=7.9e-21 Score=149.77 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=50.3
Q ss_pred ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh
Q psy6834 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL 251 (313)
Q Consensus 193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~ 251 (313)
|..++|+++|+++|+ +.+|+|+ ||||+||+|.|||+.|+||++|+|||+||++|.
T Consensus 5 m~~~~I~~~L~~~l~-~~~l~V~---~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~ 59 (82)
T 3tr3_A 5 VTTHDIKQWIETGLS-ESRVISA---EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALG 59 (82)
T ss_dssp CCHHHHHHHHHHHST-TCEEEEE---EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTG
T ss_pred chHHHHHHHHHhhCC-CcEEEEE---cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHH
Confidence 688999999999997 6789998 579999999999999999999999999999443
No 18
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.79 E-value=7.6e-20 Score=148.34 Aligned_cols=67 Identities=24% Similarity=0.487 Sum_probs=55.9
Q ss_pred ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh--------hhhhhhch--hhh
Q psy6834 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL--------SGISYKCN--RHW 262 (313)
Q Consensus 193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~--------haisikT~--~eW 262 (313)
|..++|+++|+++|+ |.+|+|. |||+||+|.|||+.|+||++|+|||+||++|. |+++++|+ +||
T Consensus 6 m~~~~I~~~L~~~l~-p~~l~V~----G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALsi~t~TP~Ew 80 (97)
T 1ny8_A 6 MENNEIQSVLMNALS-LQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEW 80 (97)
T ss_dssp CCCHHHHHHHHHHHC-CSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHHH
T ss_pred cCHHHHHHHHHhhCC-CcEEEEE----cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEEeEecChHHH
Confidence 466999999999996 6789998 69999999999999999999999999999653 34455554 466
Q ss_pred hh
Q psy6834 263 KS 264 (313)
Q Consensus 263 ~~ 264 (313)
++
T Consensus 81 ~~ 82 (97)
T 1ny8_A 81 AR 82 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 55
Done!