RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6834
         (313 letters)



>gnl|CDD|216662 pfam01722, BolA, BolA-like protein.  This family consist of the
           morphoprotein BolA from E. coli and its various
           homologues. In E. coli over expression of this protein
           causes round morphology and may be involved in switching
           the cell between elongation and septation systems during
           cell division. The expression of BolA is growth rate
           regulated and is induced during the transition into the
           the stationary phase. BolA is also induced by stress
           during early stages of growth and may have a general
           role in stress response. It has also been suggested that
           BolA can induce the transcription of penicillin binding
           proteins 6 and 5.
          Length = 72

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 202 LQREFPKAKSIEVQDVSG-GCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           L+   P    +EV+D S  G G+ F+++V+S  F+G S VK+H LV   
Sbjct: 3   LEAALP-PAHLEVEDESHKGDGSHFKVVVVSDAFEGKSLVKRHRLVYAA 50



 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 50 LQREFPKAKSIEVQDVSG-GCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          L+   P    +EV+D S  G G+ F+++V+S  F+G S VK+H LV  
Sbjct: 3  LEAALP-PAHLEVEDESHKGDGSHFKVVVVSDAFEGKSLVKRHRLVYA 49


>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal
           transduction mechanisms].
          Length = 90

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHML 245
           I    ++  L+  FP +  +E+ D S       GG G+ F+++++S  F+G S V +H L
Sbjct: 3   IQRERIEKKLRAAFPPSF-LEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRL 61

Query: 246 VNKV 249
           V   
Sbjct: 62  VYSA 65



 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHML 93
          I    ++  L+  FP +  +E+ D S       GG G+ F+++++S  F+G S V +H L
Sbjct: 3  IQRERIEKKLRAAFPPSF-LEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRL 61

Query: 94 VNK 96
          V  
Sbjct: 62 VYS 64


>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA
          superfamily [Transcription].
          Length = 80

 Score = 34.7 bits (80), Expect = 0.007
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 46 LKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLV 94
          +KS+L+   P  + +EV+    G G+ F+++ +S EF G S VK+  LV
Sbjct: 6  IKSLLENALPLEE-VEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLV 49



 Score = 34.7 bits (80), Expect = 0.007
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 198 LKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLV 246
           +KS+L+   P  + +EV+    G G+ F+++ +S EF G S VK+  LV
Sbjct: 6   IKSLLENALPLEE-VEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLV 49


>gnl|CDD|183159 PRK11482, PRK11482, putative DNA-binding transcriptional regulator;
           Provisional.
          Length = 317

 Score = 28.1 bits (63), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 3   PQIFFHNIPITDTE 16
           PQ+   NIPI+D E
Sbjct: 144 PQLLLRNIPISDAE 157


>gnl|CDD|218288 pfam04842, DUF639, Plant protein of unknown function (DUF639).
           Plant protein of unknown function.
          Length = 682

 Score = 27.9 bits (62), Expect = 8.6
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 17/84 (20%)

Query: 127 YSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLH--LQDGSLESST--CLLQWAGPKSL 182
           Y+RNF++ C  + L             SR   + H  L+D +    T   +L W  P   
Sbjct: 64  YARNFVEYCCFRAL-------------SRDSSEFHPCLKDPAFRRLTFDMMLAWENPYVK 110

Query: 183 ARYCTQNAAQITEANLKSVLQREF 206
           +R    +A+         V +   
Sbjct: 111 SRNSYNDASGKPSFMPLLVDEGRS 134


>gnl|CDD|147580 pfam05474, Semenogelin, Semenogelin.  This family consists of
           several mammalian semenogelin (I and II) proteins.
           Freshly ejaculated human semen has the appearance of a
           loose gel in which the predominant structural protein
           components are the seminal vesicle secreted semenogelins
           (Sg).
          Length = 450

 Score = 27.8 bits (61), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 275 VHDHDRPKTNKQYDLRPSKMALKAE 299
           V+DHD+ + +KQYDL       K+E
Sbjct: 73  VNDHDQTRKSKQYDLNAQNKTTKSE 97


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,605,600
Number of extensions: 1273465
Number of successful extensions: 868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 10
Length of query: 313
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 216
Effective length of database: 6,635,264
Effective search space: 1433217024
Effective search space used: 1433217024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)