RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6834
(313 letters)
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom
center for infectious disease, BOL like protein, unknown
FU; 1.95A {Babesia bovis}
Length = 105
Score = 70.9 bits (174), Expect = 9e-16
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 47/130 (36%)
Query: 181 SLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTV 240
+L + ++++ ++ L+ + ++V D SGGCGA F ++S +F+G +
Sbjct: 11 TLEAQTQGPGSMVSKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLL 69
Query: 241 KQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEI 300
+ LVN A+ AE+
Sbjct: 70 DRQRLVNS----------------------------------------------AIAAEM 83
Query: 301 KEMHGLRIHT 310
++H +
Sbjct: 84 PQIHAFTMKC 93
Score = 68.3 bits (167), Expect = 8e-15
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 SLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTV 88
+L + ++++ ++ L+ + ++V D SGGCGA F ++S +F+G +
Sbjct: 11 TLEAQTQGPGSMVSKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLL 69
Query: 89 KQHMLVNK 96
+ LVN
Sbjct: 70 DRQRLVNS 77
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure,
ssgcid, seattle structural genomics center for
infectious disease; NMR {Plasmodium falciparum}
Length = 108
Score = 66.7 bits (163), Expect = 3e-14
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 47/117 (40%)
Query: 194 TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSG 253
+ ++ L +E+ D S GCG F+ +++S F+ + +H LVN
Sbjct: 25 IQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNT----- 78
Query: 254 ISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHT 310
LK E++ +H +
Sbjct: 79 -----------------------------------------ILKEELQNIHAFSMKC 94
Score = 64.4 bits (157), Expect = 2e-13
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 42 TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+ ++ L +E+ D S GCG F+ +++S F+ + +H LVN
Sbjct: 25 IQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNT 78
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 60.2 bits (146), Expect = 7e-12
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 48/125 (38%)
Query: 187 TQNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHML 245
+++ L+ L+++ A+ +EV+D + C F ++V+S +F+G +++H L
Sbjct: 24 GAATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRL 82
Query: 246 VNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHG 305
VN+ L E+ +H
Sbjct: 83 VNE----------------------------------------------CLAEELPHIHA 96
Query: 306 LRIHT 310
T
Sbjct: 97 FEQKT 101
Score = 59.4 bits (144), Expect = 2e-11
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 35 TQNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHML 93
+++ L+ L+++ A+ +EV+D + C F ++V+S +F+G +++H L
Sbjct: 24 GAATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRL 82
Query: 94 VNK 96
VN+
Sbjct: 83 VNE 85
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 55.4 bits (134), Expect = 2e-10
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+T++ L+ +++ FP+A+ I V + G + I VIS +F+G S ++QH ++ K
Sbjct: 6 VTQSQLELLIRNAFPEAE-ITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYK 59
Score = 55.4 bits (134), Expect = 2e-10
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 248
+T++ L+ +++ FP+A+ I V + G + I VIS +F+G S ++QH ++ K
Sbjct: 6 VTQSQLELLIRNAFPEAE-ITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYK 59
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A
{Coxiella burnetii}
Length = 82
Score = 48.1 bits (115), Expect = 8e-08
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
+T ++K ++ +++ + + G G FE +V+ P F+G + + +H LV
Sbjct: 5 VTTHDIKQWIETGLSESR-VISAE---GDGHHFEAVVLCPTFEGQTALTRHRLVYNA 57
Score = 48.1 bits (115), Expect = 9e-08
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+T ++K ++ +++ + + G G FE +V+ P F+G + + +H LV
Sbjct: 5 VTTHDIKQWIETGLSESR-VISAE---GDGHHFEAVVLCPTFEGQTALTRHRLVYN 56
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
+ ++ +++ P+A+ ++VQ G FE V+SP F G + + +H +V
Sbjct: 6 LDAETIRKLIESGLPEAR-VDVQG---EDGVHFEATVVSPAFVGKAPLARHRMVYAT 58
Score = 46.6 bits (111), Expect = 2e-07
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+ ++ +++ P+A+ ++VQ G FE V+SP F G + + +H +V
Sbjct: 6 LDAETIRKLIESGLPEAR-VDVQG---EDGVHFEATVVSPAFVGKAPLARHRMVYA 57
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 47.0 bits (112), Expect = 3e-07
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
+ ++SVL + + V G G+ F+++ + F G+S VK+ V
Sbjct: 6 MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGP 57
Score = 46.6 bits (111), Expect = 3e-07
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
+ ++SVL + + V G G+ F+++ + F G+S VK+ V
Sbjct: 6 MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYG 56
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural GEN NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 42.7 bits (101), Expect = 1e-05
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 194 TEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVN 247
++ L+ F + +EV D S G + F+++++S F G + +H ++
Sbjct: 10 IRERIEEKLRAAF-QPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIY 68
Query: 248 KV 249
Sbjct: 69 ST 70
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 42 TEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
++ L+ F + +EV D S G + F+++++S F G + +H ++
Sbjct: 10 IRERIEEKLRAAF-QPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIY 68
Query: 96 K 96
Sbjct: 69 S 69
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 123
Score = 42.4 bits (100), Expect = 2e-05
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 187 TQNAAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTV 240
AA EA +++ L++ + +E+++ SG G F + V+S F+G+S +
Sbjct: 20 GSAAAGPVEAAIRAKLEQAL-SPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPL 78
Query: 241 KQHMLVNKV 249
++H LV++
Sbjct: 79 QRHRLVHEA 87
Score = 42.1 bits (99), Expect = 3e-05
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 35 TQNAAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTV 88
AA EA +++ L++ + +E+++ SG G F + V+S F+G+S +
Sbjct: 20 GSAAAGPVEAAIRAKLEQAL-SPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPL 78
Query: 89 KQHMLVNK 96
++H LV++
Sbjct: 79 QRHRLVHE 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 6e-04
Identities = 57/325 (17%), Positives = 93/325 (28%), Gaps = 99/325 (30%)
Query: 47 KSVLQREFPKAKSIEVQDVSGGCGAMFEIMV---ISPE--FKGLSTVKQHMLVNKDSSSN 101
K+ + + S +VQ +F + + SPE + L + + N S S+
Sbjct: 163 KTWVALDV--CLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 102 HS-PYSRNFHQTTVAYSRNFHQTTVAYSRNFLQL---CNSKELN-FRNFQ----QTT--- 149
HS H R Y L L N+K N F N TT
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFK 275
Query: 150 -------VAYSSRICYDLHLQDG--SLESSTCLLQWAG--------------PKSLA--- 183
A ++ I D H E + LL++ P+ L+
Sbjct: 276 QVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 184 -----------RYCTQNAAQITEA------NLKSVLQRE-------FPK-----AKSIEV 214
+ N ++T L+ R+ FP + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 215 --QDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGI--SYKCNR------HWKS 264
DV ++MV+ + S V++ + +S+ I K H
Sbjct: 395 IWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--R 447
Query: 265 RILTS--ALKAVVHDHDRPKTNKQY 287
I+ K D P QY
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 40.2 bits (93), Expect = 8e-04
Identities = 67/433 (15%), Positives = 109/433 (25%), Gaps = 169/433 (39%)
Query: 11 PITDTEEIDSIFTLMTQKSLARY-----CTQNAAQITEANLKSVLQREFP---------- 55
I EEID I S ++ ++ + ++ VL+ +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 56 KAKSIEVQ-------------------DVS--------------------------GGCG 70
+ S+ + +VS G G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 71 ----------------AM-FEIM------VISPE--FKGLSTVKQHMLVNKDSSSNHS-P 104
M F+I SPE + L + + N S S+HS
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 105 YSRNFHQTTVAYSRNFHQTTVAYSRNFLQL---CNSKELN-FRNFQ----QTT------- 149
H R Y L L N+K N F N TT
Sbjct: 223 IKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTD 279
Query: 150 ---VAYSSRICYDLHLQDG--SLESSTCLLQWAG--PKSLAR-YCTQN-------AAQIT 194
A ++ I D H E + LL++ P+ L R T N A I
Sbjct: 280 FLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 195 EA-----NLKSVLQREFPKA--KSIEVQDVSGGCGAMFEIMVISPE-------------F 234
+ N K V + S+ V + MF+ + + P F
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 235 KGLSTVKQHM---LVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRP 291
+ + + L SL + K ++ + +L+
Sbjct: 398 DVIKSDVMVVVNKLHKY-SL------VEKQPKESTIS------IPSI-------YLELKV 437
Query: 292 SKMALKAEIKEMH 304
+H
Sbjct: 438 K----LENEYALH 446
Score = 29.4 bits (65), Expect = 1.7
Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 91/228 (39%)
Query: 5 IFFHNIPIT-----------DTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQRE 53
+F + I ++ + + + SL ++++
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------------------VEKQ 420
Query: 54 FPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQH-MLVNK-------DSSSNHSPY 105
PK +I + + E+ V L H +V+ DS PY
Sbjct: 421 -PKESTISIPSIY------LELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPY 468
Query: 106 SRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQ----TTVA---------- 151
+ + + + H + + L L+FR +Q + A
Sbjct: 469 LDQYFYSHIGH----HLKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 152 ------YSSRIC-----YDLHLQD-----GSLESS------TCLLQWA 177
Y IC Y+ + +E + T LL+ A
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.031
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 18/43 (41%)
Query: 263 KSRI--LTSALK--AVVHDHDRPKTNKQYDLRPSKMALKAEIK 301
K + L ++LK A D P+ +A+KA ++
Sbjct: 19 KQALKKLQASLKLYA-------D------DSAPA-LAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.25
Identities = 32/174 (18%), Positives = 49/174 (28%), Gaps = 59/174 (33%)
Query: 151 AYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREF---- 206
AYS+R L L GSLE P + +Q LQ +F
Sbjct: 3 AYSTRP---LTLSHGSLEHV-----LLVPTASFFIASQ-------------LQEQFNKIL 41
Query: 207 PKAKSIEVQD----------------VS-----GGCGAMFEIMVIS-PEFKG--LSTVKQ 242
P+ D VS G +++ + EF+ L
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 243 HMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMAL 296
H L L + ++ + + A + RP + S AL
Sbjct: 102 HALA--AKLLQENDTTLVK-TKELIKNYITARIMA-KRPFD------KKSNSAL 145
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 27.1 bits (60), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 160 LHLQDGSLESSTCLLQWAGPKSLARYC 186
L L+D S+ + L + GP R+C
Sbjct: 504 LTLKDDSVPVNRNLSIYDGP--EQRFC 528
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.375
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,314,662
Number of extensions: 228949
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 27
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)