RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6834
         (313 letters)



>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 113

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 177 AGPKSLARYCTQNAA-QITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEF 234
           +G   + R     A  +++   L+  L+++   A+ +EV+D +   C   F ++V+S +F
Sbjct: 13  SGASLVPRGSEGAATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKF 71

Query: 235 KGLSTVKQHMLVNKV 249
           +G   +++H LVN+ 
Sbjct: 72  EGKPLLQRHRLVNEC 86



 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          ++   L+  L+++   A+ +EV+D +   C   F ++V+S +F+G   +++H LVN+
Sbjct: 30 LSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNE 85


>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
           [TaxId: 562]}
          Length = 97

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           +    ++SVL       + + V     G G+ F+++ +   F G+S VK+   V   
Sbjct: 6   MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGP 57



 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          +    ++SVL       + + V     G G+ F+++ +   F G+S VK+   V  
Sbjct: 6  MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYG 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,049,027
Number of extensions: 42504
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)