BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6836
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 17 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
R V + PCC ALYDFEPEN GELGFKEGD ITL N++DENWYEG L+G++G+FP+ YV
Sbjct: 4 RASVGSDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63
Query: 77 QVVVPLP 83
+++V LP
Sbjct: 64 EILVALP 70
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 22 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81
+ PCC ALYDFEPEN GELGFKEGD ITL N++DENWYEG L+G +G+FP+ YV+++V
Sbjct: 5 SSGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
Query: 82 LP 83
LP
Sbjct: 65 LP 66
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPL 82
P C ALYDFEPEN GELGF+EGD ITL N++DENWYEG L+G++G+FP++YVQV+VPL
Sbjct: 12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVLVPL 71
Query: 83 P 83
P
Sbjct: 72 P 72
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPL 82
PCC LYDFEPEN GELGFKEGD ITL N++DENWYEG ++G +G+FP+ YV+V+VPL
Sbjct: 2 DQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL 61
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF P+ GEL FK GD ITL+N+ D NW+EG LN R G FP YV
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 34/48 (70%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF P+ GEL FK GD ITL+N+ D NW+EG LN R G FP YV
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 34/48 (70%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF P+ GEL FK GD ITL+N+ D NW+EG LN R G FP YV
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 83
AP AL+DF + EL FK GD I L++R++++W EG++ G TG FP+++V+++ P
Sbjct: 18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 77
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G+TG FP YV V
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G+TG FP YV
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVTYVQV 78
A YDF+ EL FK GD + ++N D+NWY+ LNG+ G+ P Y+++
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 55
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
P AL ++ +NPG+L F +GD I L ++DENWY+G +NG +G FP + V+V+
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G+TG FP YV
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G+TG FP YV
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
AL+DF+P+ GELGF+ GD I +M+ D NW++G+ +G+TG FP YV
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3
Domain
Length = 58
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALY F+P+ G+LG K GD + L+ ++ WY+GS NGRTG FP YV+
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 17 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDE--NWYEGSLNGRTGYFPVT 74
R +N+ TALY FE + PG+L F+ GD IT++++ D +W+EG L G+TG FP
Sbjct: 10 RVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPAN 69
Query: 75 YV 76
YV
Sbjct: 70 YV 71
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 15 QGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVT 74
QG + AP AL+DF + EL FK GD I L++R++++W EG++ G TG FP++
Sbjct: 165 QGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLS 224
Query: 75 YVQVVVPLP 83
+V+++ P
Sbjct: 225 FVKILKDFP 233
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDE--NWYEGSLNGRTGYFPVTYVQV 78
ALY+F E PG+L FK+GD IT++ + D +W+ G NG+ G FP YV+V
Sbjct: 4 ATAVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
K AL+DF + EL FK GD I L++R++++W EG++ G TG FP+++V+++
Sbjct: 3 KHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVVVPL 82
C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +V+++ PL
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL 62
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 9 LPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT 68
L P + TP + A+YD+ N EL F +G I +MN+ D +W++G +NG T
Sbjct: 19 LLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVT 78
Query: 69 GYFPVTYVQVVV 80
G FP YV++
Sbjct: 79 GLFPSNYVKMTT 90
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDE--NWYEGSLNGRTGYFPVTYVQVV 79
+P ALY F E G+L F++GD IT++ + D +W+ G +NGR G FP YV++V
Sbjct: 3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
A+YD+ N EL F +G I +MN+ D +W++G +NG TG FP YV++
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVVVP 81
C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +V+++ P
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 68
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVVVP 81
C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +V+++ P
Sbjct: 6 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 62
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
ALYD++ + EL FKEGDTI + + W+EG LNG+ G+ P YVQ +
Sbjct: 7 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
C ALY F+ EL ++GD + + + +E W+ GSLNG+ G+FP YV+
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
ALYD++ + EL FKEGDTI + + W+EG LNG+ G+ P YVQ +
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG--RTGYFPVTYVQVV 79
A ++F + E+ F++G+ ITL+ +VDENWYEG + G R G FP+TYV V+
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 64
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG--RTGYFPVTYVQVV 79
A ++F + E+ F++G+ ITL+ +VDENWYEG + G R G FP+TYV V+
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR--VDENWYEGSLNGRTGYFPVTYVQVV 79
C ++ +E +N EL KEGD +TL+N+ +D W+EG LNGR G FP +V+++
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
+DF+ ++P EL ++GD + + VD+NW EG +GR G FP YV+V+
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL 56
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
+DF+ ++P EL ++GD + + VD+NW EG +GR G FP YV+V+
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL 62
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +NGR G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVK 59
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
ALY FEP P EL F+EGD I + + D NW++G+ GRTG P YV
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +NGR G+ P YV+
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVK 54
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++PGE+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 11 ALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
ALY FEP P EL F+EGD I + + D NW++G+ GRTG P YV
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
AL DFE + ELGF++ D IT++++ DE+ + G LNG G+FP +V+V+
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVL 62
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 18 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPVTYV 76
T N A ++F+ N EL F +GD I + RV+E W+EG+LNGRTG+FP YV
Sbjct: 2 TDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVT-RVEEGGWWEGTLNGRTGWFPSNYV 60
Query: 77 QVV 79
+ V
Sbjct: 61 REV 63
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
A +DF+ + EL ++GD + + ++D+NWYEG +GR G FP TY++++
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 28 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
ALY F+ P EL F+ GD I ++ +++ W EGSL GRTG FP +V++
Sbjct: 17 VALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
ALY FEP P EL +EGD I + + D NW++G+ GRTG P YV
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R GY P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVK 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 21 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
+ K AL+ +E P +L F+EGD I ++++V+E W EG G+ G FP +V+
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 11 ALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 21 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80
N A ++F+ N EL F +GD I + + W+EG+ NGRTG+FP YV+ +
Sbjct: 3 ANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62
Query: 81 P 81
P
Sbjct: 63 P 63
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 37/53 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+ + P
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDP 62
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
A+YD+ + EL F+EG I ++ + D+ WYEG +NG TG FP YV+ +
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQV 78
A Y F+ + EL F++G+ I L+ +V+ENWYEG + GR G FP +YVQV
Sbjct: 22 AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 73
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1
Length = 68
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
C + + P+N EL K GD I ++ V+E W+EG LNG+TG FP +++
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 36/49 (73%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P +YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVK 59
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
LYD++ ++P EL K+GD +TL+N +++W++ +NGR G+ P Y++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 19 PVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
P+ +K C L+++ P+N EL K GD I + V+E W+ G+LN + G FP +V+
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
C + + P+N EL K GD I ++ V+E W+EG LNG+TG FP +++
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVTYVQV 78
A YDF+ EL FK GD + ++N D+NWY+ LNG+ G+ P Y+++
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM 64
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPL 82
+YD+ +N EL F +G I ++N+ D +W++G ++G+ G FP YV++ +
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDM 60
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
C L+D+ P+N EL GD I ++ V+E W+ G+LN + G FP +V+
Sbjct: 7 CKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
LYD++ ++P EL K+GD +TL+N +++W++ +N R G+ P Y++
Sbjct: 11 VLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLK 59
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVK 59
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQ 77
A Y+F + EL +EGD + + +R+ D+ W++G NGR G+FP TYV+
Sbjct: 9 TAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 15 QGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDEN---WYEGSLNGRTGYF 71
Q + ++NK AL+D+EP+N EL KEGD +T+++R DE+ W+ LN + GY
Sbjct: 162 QEKMGIMNKG-VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYV 220
Query: 72 P 72
P
Sbjct: 221 P 221
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 15 QGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDEN---WYEGSLNGRTGYF 71
Q + ++NK AL+D+EP+N EL KEGD +T+++R DE+ W+ LN + GY
Sbjct: 162 QEKMGIMNKG-VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYV 220
Query: 72 P 72
P
Sbjct: 221 P 221
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+P ALYDFE ELGF+ G+ + +++ + +W+ G L+ + G FP YV
Sbjct: 2 SPWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
A ++F+ N EL F +GD I + + W+EG+ NGRTG+FP YV+ +
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
LYD++ ++P EL K+GD +TL+N +++W++ +N R G+ P Y++
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
C L+++ P+N EL K GD I + V+E W+ G+LN + G FP +V+
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
A ++F+ N EL F +GD I + + W+EG+ NGRTG+FP YV+ +
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ + E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
A ALYDFE EL FK G+ IT+++ D NW++G + TG FP +V
Sbjct: 5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ + R G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVK 59
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR-VDENWYEGSLNGRTGYFPVTYVQV 78
A DF+ EL FK GD + ++N D+NWY+ LNG+ G+ P Y+++
Sbjct: 3 AIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEM 55
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ + R G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVK 59
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
LYD++ ++P E+ K+GD +TL+N +++W++ +N R G+ P Y++
Sbjct: 11 VLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSL-NGRTGYFPVTYVQVV 79
ALYD+E + EL FK GD +T M DE W +G L NG+ G +P YV+ +
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALY F P+ +L + GD ITL+ +E+W++G + R G+FP +VQ
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+ ALYDFE ELGF+ G+ + +++ + +W+ G L+ + G FP YV
Sbjct: 2 RVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
ALYDFE ELGF+ G+ + +++ + +W+ G L+ + G FP YV
Sbjct: 7 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80
C AL+D + ELGFK GD I +M+ + W+ G + G+FP ++V++ V
Sbjct: 38 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRV 92
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
ALYDFE ELGF+ G+ + +++ + +W+ G L+ + G FP YV
Sbjct: 3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l
Mutant
Length = 62
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 34/49 (69%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
LYD++ ++P E+ K+GD +TL+N +++W++ ++ R G+ P Y++
Sbjct: 11 VLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLK 59
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
A ++F+ N EL +GD I + + W+EG+LNGRTG+FP YV+ +
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI 65
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 VNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
V+ AP ALYD+ EL GD I + + +E+W+ GS+ G+ GYFP +V
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN--GRTGYFPVTYVQVV 79
A+YD+ + E+ FK+GD I + +DE W G++ GRTG P YV+ +
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80
C AL+D + ELGFK GD I +M+ + W+ G + G+FP ++V++ V
Sbjct: 32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRV 86
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+A A+YDFE EL FK G+ IT+++ D NW++G + G FP +V
Sbjct: 16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQ 77
A YDF + EL KEGD I ++N+ + W+ G + GR G+FP YV+
Sbjct: 7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
ALYD++ E+ F D IT + +D+ W+ G GR G FP YV++
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 63
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 5 SASPLPSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGS 63
S+ + SP R G P+ ALYD+E +L FK+G+ + ++N + +W+ S
Sbjct: 68 SSDTVTSPQRAG--PLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHS 125
Query: 64 LN-GRTGYFPVTYV 76
L+ G+TGY P YV
Sbjct: 126 LSTGQTGYIPSNYV 139
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
A ALYDFE EL FK G+ I +++ D NW++G + G FP +V
Sbjct: 17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
ALYD++ E+ F D IT + +D+ W+ G GR G FP YV++
Sbjct: 13 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
+P C ALY ++ ++ EL F D I ++ W+ G L G+ G FP YV +
Sbjct: 5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 22 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG---RTGYFPVTYVQV 78
NK +YD + +N EL F EG+ I + D+ W+ G + G R G FPV++V +
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
Query: 79 V 79
+
Sbjct: 68 L 68
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
ALYD++ E+ F D IT + +D+ W+ G GR G FP YV++
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 71
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 8/57 (14%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY----EGSLNGRT----GYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W+ + + NG+T G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVK 67
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQV 78
AP TA YD++ EL F E D I + VD++W+ G L +G G FP YV +
Sbjct: 1 APWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQV 78
AP TA YD++ EL F E D I + VD++W+ G L +G G FP YV +
Sbjct: 4 APWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG----SLNGRT----GYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ ++NG+T G+ P YV+
Sbjct: 6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80
C AL+D + ELGFK GD I + + + W+ G + G+FP ++V++ V
Sbjct: 69 CAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRLRV 123
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPVTYVQVVV 80
A AL D+ + L FK D IT+ + EN W+ G LNG+ G FPV +V++++
Sbjct: 10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILL 67
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRV---DENWYEGSLNGRTGYFPVTYVQVVVPLP 83
ALYD+E + EL F EG I ++N+ D+ ++EG NGR G FP V+ + P
Sbjct: 13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGP 70
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 22 NKAPCCTALYDFEPENPG-ELGFKEGDTITLMNRVD-----ENWYE-GSLNGRTGYFPVT 74
+K ALYDF PENP E+ K+GD + ++++ D +W++ + NG GY P
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 75 YVQVV 79
Y++++
Sbjct: 72 YIEII 76
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
Length = 80
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 22 NKAPCCTALYDFEPENPG-ELGFKEGDTITLMNRVD-----ENWYE-GSLNGRTGYFPVT 74
+K ALYDF PENP E+ K+GD + ++++ D +W++ + NG GY P
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 75 YVQVV 79
Y++++
Sbjct: 72 YIEII 76
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG----SLNGRT----GYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ ++NG+T G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 67
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 27 CTALYDFEPENPGE-LGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQVV 79
C LY F E G+ L F G+ ITL+ D W+EG +G G+FP +YVQ++
Sbjct: 6 CRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL 60
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
A +D+ + EL FK+G ++ L +R E+W+EG NG G P Y+ V
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG---RTGYFPVTYVQVV 79
+YD + +N EL F EG+ I + D+ W+ G + G R G FPV++V ++
Sbjct: 6 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL 59
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG--------RTGYFPVTYVQ 77
ALYD++ ++P E+ K+GD +TL+N +++W++ + R G+ P YV+
Sbjct: 11 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVK 67
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN--GRTGYFPVTYVQVV 79
A+YD+ + E+ F++GDTI + ++D+ W G++ G TG P YV+ +
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQV 78
P TA YD++ EL F E D I + VD++W+ G L +G G FP YV +
Sbjct: 1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 27 CTALYDFEPENPG-ELGFKEGDTITLMNRVD-----ENWYE-GSLNGRTGYFPVTYVQVV 79
ALYDF PENP E+ K+GD + ++++ D +W++ + NG GY P Y++++
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 69
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN--GRTGYFPVTYVQVV 79
A+YD+ ++ E+ F++GD I + +D+ W G++ GRTG P Y++ V
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDEN-WYEGSLN-GRTGYFPVTYVQVV 79
ALYD++ + EL FK GD +T + DE W G L+ G+ G +P YV+ +
Sbjct: 8 ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGSLNGRTGYFPVTYVQV 78
A +DF EL F++G + ++N D+ NWY L+G+ G P Y+++
Sbjct: 3 AIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNR---VDENWYEGSLNGRTGYFPVTY 75
AL+D+ E EL F+EG+++T++ R + +W+ +L+G+ GY P Y
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
+D++ ++ EL G+ IT + + D W+EG +NGR G FP +V+ +
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ GRTGY P YV
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80
A++D EL FK GD I +++ +++W+ G ++ G+FP ++V++ V
Sbjct: 12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWV 66
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALY + PG+L F EG+ I L+ + D W+ GS+ R+G FP YV+
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTGSIGDRSGIFPSNYVK 60
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
ALY + + L F + D IT++ + D W+ G + G+ G+FP +YV+++
Sbjct: 15 AQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVKLI 66
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 18 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTY 75
T + ALYD+E +L FK+G+ ++N + +W+E G++GY P Y
Sbjct: 21 TGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNY 80
Query: 76 V 76
V
Sbjct: 81 V 81
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGSLN-GRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ SL+ G+TGY P YV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGSLN-GRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ SL+ G+TGY P YV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGSLN-GRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ SL+ G+TGY P YV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ G+TGY P YV
Sbjct: 8 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 16 GRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNR-----VDENWYEGSL-NGRTG 69
G TP P TA++D+E EL + GD + ++++ DE W+ G L +GR G
Sbjct: 24 GTTPA---GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVG 80
Query: 70 YFPVTYV 76
FP YV
Sbjct: 81 VFPSNYV 87
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+ + E EL +G +T+M + + W+ GS NG+ G+FP YV
Sbjct: 7 FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L FK+G+ ++N + +W+E G+ GY P YV
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFPVTYVQVVVP 81
ALYDFEPEN EL EGD + + + + W E +TG P +V + P
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
A +D+ EL FK+G ++ L R ++W+EG NG G P Y+ V
Sbjct: 12 AIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDE---NWYEGSLNGRTGYFPVTYVQVVVPL 82
ALYD E+P EL F++GD +T++ + + W+ SL+GR G P ++++V +
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGM 64
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVVP 81
AL+DF + +L FK+GD + + ++ +E W+ ++G+ G PV YV+ P
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRP 59
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 60 YEGSLNGRTGYFPVTYVQVV 79
+EG NG+ G+FP T+V+++
Sbjct: 142 WEGECNGKRGHFPFTHVRLL 161
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 38 PGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 42
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ G+TGY P YV
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGSLN-GRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ SL+ G+TGY P YV
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 LSASPLPSPV---RQGRTPVVNK--APCCTALYDFEPENPGELGFKEGDTITLMNRVDEN 58
L + L PV RQG ++ + A AL+DF + +L FK+GD + + ++ +E
Sbjct: 109 LDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 168
Query: 59 WYEG-SLNGRTGYFPVTYVQVVVP 81
W+ G+ G PV YV+ P
Sbjct: 169 WWNAEDSEGKRGMIPVPYVEKYRP 192
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFPVTYV 76
ALYD+E +L FK+G+ + ++N + +W+ G+TGY P YV
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 20 VVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
+V + ALYD+E +L F +G+ ++N + +W+E G TGY P Y+
Sbjct: 1 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 LSASPLPSPV---RQGRTPVVNK--APCCTALYDFEPENPGELGFKEGDTITLMNRVDEN 58
L + L PV RQG ++ + A AL+DF + +L FK+GD + + ++ +E
Sbjct: 111 LDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 170
Query: 59 WYEG-SLNGRTGYFPVTYVQVVVP 81
W+ G+ G PV YV+ P
Sbjct: 171 WWNAEDSEGKRGMIPVPYVEKYRP 194
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 14 RQGRTPV--VNKAPCCT------ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN 65
RQG P V K T ALYD++ ++P E+ K+GD +TL+N +++W++ +N
Sbjct: 3 RQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRV---DENWYEGSLNGRTGYFPVTYVQVV 79
ALYD P+ EL F GD +T++ + E W++ L+GR G P +Q++
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQIL 65
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYV 76
A+Y + P+N EL +EGD + +M + D+ W+ G ++ RT G FP YV
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVG-VSRRTQKFGTFPGNYV 61
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 LSASPLPSPV---RQGRTPVVNK--APCCTALYDFEPENPGELGFKEGDTITLMNRVDEN 58
L + L PV RQG ++ + A AL+DF + +L FK+GD + + ++ +E
Sbjct: 109 LDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ 168
Query: 59 WYEG-SLNGRTGYFPVTYVQVVVP 81
W+ G+ G PV YV+ P
Sbjct: 169 WWNAEDSEGKRGMIPVPYVEKYRP 192
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 60 YEGSLNGRTGYFPVTYVQVV 79
+EG NG+ G+FP T+V+++
Sbjct: 275 WEGECNGKRGHFPFTHVRLL 294
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQ 77
ALY FE N E+ F GD I + + + W GS G G+FP YV+
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E G TGY P YV
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 38 PGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
P E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 5 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 44
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGSLNGRTGYFPVTYVQV 78
A +DF EL F++ + ++N D+ NWY L+G+ G P Y+++
Sbjct: 3 AIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
AL+ +EP + G+LGF++G+ + ++ + E W SL G+ G+ P +V
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 65
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
AL+ +EP + G+LGF++G+ + ++ + E W SL G+ G+ P +V
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 59
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
AL+ +EP + G+LGF++G+ + ++ + E W SL G+ G+ P +V
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 65
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SL-NGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E SL G TGY P YV
Sbjct: 6 ALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
AL + + L F + D IT++ + ENW+ G ++G G+FP +YV+++
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKII 64
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVV 80
LYDF + +L FK+G+ + ++ + +E W+ + +GR G PV YV+ +V
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 41 LGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81
L + GD + + +EG +NGR G FP T+V++ P
Sbjct: 256 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 296
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
Length = 167
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
AL+ +EP + G+LGF++G+ + ++ + E W SL G+ G+ P +V
Sbjct: 9 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 57
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
AL+ +EP + G+LGF++G+ + ++ + E W SL G+ G+ P +V
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 59
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76
AL+ +EP + G+LGF++G+ + ++ + E W SL G+ G+ P +V
Sbjct: 2 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 53
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+++ E EL +G + +M + + W+ GS NG+ G+FP YV
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVV 80
LYDF + +L FK+G+ + ++ + +E W+ + +GR G PV YV+ +V
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 41 LGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81
L + GD + + +EG +NGR G FP T+V++ P
Sbjct: 256 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 296
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SL-NGRTGYFPVTYV 76
ALYD+E +L F +G+ ++N + +W+E SL G TGY P YV
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
E+ K+GD +TL+N +++W++ +N R G+ P YV+
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 52
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWY--EGSLNGRTGYFP---VTYVQ 77
ALYDFEPEN EL EGD + + + + W E +TG P V+Y+Q
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 17 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVT 74
RT ALYD+E +L F +G+ ++N + +W+E G TGY P
Sbjct: 8 RTRGGTGVTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSN 67
Query: 75 YV 76
YV
Sbjct: 68 YV 69
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTY-VQV 78
C L+ + N EL F+EG+ I L+++ + W++G LNG+ G FP + VQ+
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQ 77
ALY + P+N EL ++GD + +M + D+ W+ G+ + G FP YV+
Sbjct: 11 ALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
ALYD+ +NP EL GD + ++ ++ W+ NG+ G+ P +Y++
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQ 77
ALY + P+N EL ++GD + +M + D+ W+ G+ + G FP YV+
Sbjct: 11 ALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+++ E EL +G + +M + + W+ GS NG+ G+FP YV
Sbjct: 24 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 17 RTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVT 74
RT ALYD+E +L F +G+ ++N + +W+E G TGY P
Sbjct: 8 RTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSN 67
Query: 75 YV 76
YV
Sbjct: 68 YV 69
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 8 PLPSP---VRQGRTPVVNKAPC----CTALYDFEPENPGELGFKEGDTITLMNRVDENWY 60
PL SP TP + +A ALYD+E + +L F++GD + ++ E W
Sbjct: 2 PLGSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWK 61
Query: 61 EGSLNGRT-GYFPVTYVQVVVPL 82
SL R GY P YV V L
Sbjct: 62 ARSLATRKEGYIPSNYVARVDSL 84
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYV 76
ALYD+ +P +L F++GD + ++ E W SL R GY P YV
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 56
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 20 VVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYE--GSLNGRTGYFPVTYV 76
+V + ALYD+E +L F +G+ ++N + +W+E G TGY P Y+
Sbjct: 3 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 29 ALYDFEPENP-------GELGFKEGDTITLMNRVDEN-WYEGSLNGRTGYFPVTYVQVV 79
ALYD++P EL F GD IT+ +DE+ +Y G LNG+ G P +++ V
Sbjct: 12 ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEV 70
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
A + + EL F+ GD + L R +W+ G NG G P Y+ +
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQVVVP 81
+A AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+ P
Sbjct: 13 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRP 72
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
AL+ + P EL ++G+ I ++ + + W +G L GRTG FP YV
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYVQVVVPLP 83
ALYD+E + +L F++GD + ++ E W SL R GY P YV V L
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLE 69
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYVQVVVPL 82
ALYD+E + +L F++GD + ++ E W SL R GY P YV V L
Sbjct: 14 ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSL 68
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYV 76
ALYD+E + +L F++GD + ++ E W SL R GY P YV
Sbjct: 2 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 53
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYVQVV 79
ALYD+ +P +L F++GD + ++ E W SL R GY P YV V
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARV 59
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQVV 79
YD++ + EL + G+ I + ++ +E W EG LNGR G FP +V+ +
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 57
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQVV 79
YD++ + EL + G+ I + ++ +E W EG LNGR G FP +V+ +
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 56
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDE-NWYEGSLNGRTGYFPVTYVQVV 79
ALY + E+ EL F G ++ E W EG+LNG+TG P YV+ +
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL 66
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 77
A AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 77
A AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 77
A AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 77
A AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 57
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
+ + E EL G +T+ + W+ GS NG+ G+FP YV
Sbjct: 8 FAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYVQVV 79
ALYD+E + +L F++GD + ++ E W SL R GY P YV V
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARV 64
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYVQVV 79
ALYD+E + +L F++GD + ++ E W SL R GY P YV V
Sbjct: 7 ALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARV 58
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYE-GSLNGRTGYFPVTYV 76
ALYD++ +P EL + + L++ + +W+ NG GY P +Y+
Sbjct: 13 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 61
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLN-GRTGYFPVTYVQ 77
C A Y+F +L F +GD +T++ D NWY+ GR G P YVQ
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLN-GRTGYFPVTYVQ 77
C A Y+F +L F +GD +T++ D NWY+ GR G P YVQ
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine
Kinase, 20 Structures
Length = 58
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYV 76
ALYD+ P N +L ++GD ++ + W+ NG+ GY P YV
Sbjct: 4 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 54
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 77
AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 54
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYVQ 77
AL+DF + +L FK+GD + + ++ +E W+ G+ G PV YV+
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG-SLNGRTGYFPVTYV 76
ALYD+ P N +L ++GD ++ + W+ NG+ GY P YV
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLN-GRTGYFPVTYVQ 77
C A Y+F +L F +GD +T++ D NWY+ GR G P YVQ
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
LY+FE NP EL +G+ + +++ W + GR+GY P ++
Sbjct: 13 LYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILE 60
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYE-GSLNGRTGYFPVTYV 76
ALYD++ +P EL + + L++ + +W+ NG GY P +Y+
Sbjct: 24 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 72
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized
Average Structure
Length = 77
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 10 PSPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYE-GSLNGRT 68
P+P R+ + ALYD++ +P EL + + L++ + +W+ NG
Sbjct: 6 PTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHE 65
Query: 69 GYFPVTYV 76
GY P +Y+
Sbjct: 66 GYAPSSYL 73
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 29 ALYDFEPENPGELGFKEGDTITLM--NRVDENWYEGSLNGRTGYFPVTYVQ 77
AL + +N L F GD I L+ ++ W GS GR+G FP VQ
Sbjct: 13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTG-YFPVTYVQVVV 80
AL+D++ + EL F + I + + D W+ G G+ +FP YV+ ++
Sbjct: 7 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 63
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase
C Gamma-1
Length = 61
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTG-YFPVTYVQVVV 80
AL+D++ + EL F + I + + D W+ G G+ +FP YV+ ++
Sbjct: 4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVVPLP 83
LYD++ N EL + IT+ + V D +W G + G P+TY++++ P
Sbjct: 23 LYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGP 78
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+ +L F +G+ +++ +W+E G TGY P YV
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYV 60
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT-GYFPVTYVQVV 79
ALYD+ +L F++GD + ++ E W SL R GY P YV V
Sbjct: 5 IVVALYDYYSPFSWDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARV 59
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The
Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYE-GSLNGRTGYFPVTYV 76
ALYD++ +P EL + + L++ + +W+ NG GY P +Y+
Sbjct: 10 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 19 PVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEG---SLNGRTGYFPVTY 75
P + A Y+++ EL + GDT+ ++ E WY G + G FP +Y
Sbjct: 6 PTKREEKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASY 64
Query: 76 VQV 78
+ +
Sbjct: 65 IHL 67
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYE-GSLNGRTGYFPVTYV 76
ALYD++ +P EL + + L++ + +W+ NG GY P +Y+
Sbjct: 10 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVD----ENWYEGSLNGRTGYFPVTYVQ 77
A+Y F+ NP EL + ++ D W+ +NG+ GY P Y++
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIR 70
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A+ D+E + E+ GD + ++ + + W+ + + G+ P ++++
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
E+ EG+ + +++++ + W+ + TGYFP Y+Q
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 41 LGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81
L + GD + + +EG +NGR G FP T+V++ P
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A+ D+E + E+ GD + ++ + + W+ + + G+ P ++++
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
E+ EG+ + +++++ + W+ + TGYFP Y+Q
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
A+ D+ + +L F G+ I ++ + +W+ G G GY P +V
Sbjct: 12 AIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
L+ F PE EL G+ + ++ + ++NW NG+ G P Y++
Sbjct: 13 LFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLE 60
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 41 LGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81
L + GD + + +EG +NGR G FP T+V++ P
Sbjct: 20 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVD-ENWYEGSLNGRTGYFPVTYVQ 77
A+Y +E + E+ GD IT++ D W G +G G FP +Y +
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 16 GRTPVVNKAP---CCTALYDFEPENPGELGFKEGDTITLMNRVD-ENWY 60
GR P AP C T P+ PGEL F++GD +T++ + ++WY
Sbjct: 7 GRMPTRRWAPGTQCITKCEHTRPK-PGELAFRKGDVVTILEACENKSWY 54
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 31 YDFEPENPGELGFKEGDTITLM-NRVDENWYEGSL--NGRTGYFPVTYVQ 77
YDF E+ EL K GD + ++ ++ ++W+ L +G++G P +++
Sbjct: 13 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62
>pdb|2CT4|A Chain A, Solution Strutcure Of The Sh3 Domain Of The Cdc42-
Interacting Protein 4
Length = 70
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNR-VDENWYE-GSLNGRTGYFPVTYVQVV 79
C A+Y FE + G + EG+ ++LM + W G GY P +Y++V
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVT 64
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 11 SPVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTG 69
SP QG V ALY ++ +P +L FK+G+ + ++ E W S L + G
Sbjct: 2 SPEEQGDIVV--------ALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEG 53
Query: 70 YFPVTYV 76
+ P YV
Sbjct: 54 FIPSNYV 60
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A+ D+E + E+ GD + ++ + + W+ + + G+ P ++++
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
E+ EG+ + +++++ + W+ + TGYFP Y+Q
Sbjct: 97 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A+ D+E + E+ GD + ++ + + W+ + + G+ P ++++
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 63
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
E+ EG+ + +++++ + W+ + TGYFP Y+Q
Sbjct: 96 EVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 133
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 31 YDFEPENPGELGFKEGDTITLM-NRVDENWYEGSL--NGRTGYFPVTYVQ 77
YDF E+ EL K GD + ++ ++ ++W+ L +G++G P +++
Sbjct: 9 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTG-YFPVTYVQVVV 80
AL+D++ + EL F + I + + + W+ G G+ +FP YV+ +V
Sbjct: 8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse
Peroxisomal Biogenesis Factor 13
Length = 93
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDE----NWYEGSLNGR-TGYFPVTYVQVV 79
A YDF + E+ F+ GD + L + + W SL+G+ TG P YV+++
Sbjct: 19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKIL 77
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A +D+ + EL K+ + + L++ W + RTGY P YV+
Sbjct: 33 IVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE 84
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGR-TGYFPVTYVQVV 79
ALYD++ + EL F G I +++ W++G R YFP YV+ +
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGS--LNGRTGYFPVTYV 76
ALYD++ + +L F +G+ +++ +W+E G TGY P YV
Sbjct: 11 ALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYV 61
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYV 76
ALYD+ +L F +G+ ++ +W+E G TGY P YV
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY-------EGSLNGR--TGYFPVTYV 76
AL+D++ +L F+ GD + +++ E W+ +G+ G+ GY P YV
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN-GRTGYFPVTYV 76
+ A+YDF+ +L + G ++ + D +W+ G GY P YV
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 37 NPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80
+P +L K+G T+ + ++ Y+ L+G+ G P TY++
Sbjct: 262 DPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTA 305
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A +D+ + EL K+ + + L++ W + RTGY P YV+
Sbjct: 9 AKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE 57
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 12 PVRQGRTPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMN-RVDENWY--EGSLNGRT 68
P+ GR V KA A D N L FKEGD ITL+ + W+ E
Sbjct: 2 PLGSGRMRV--KAIFSHAAGD----NSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMR 55
Query: 69 GYFPVTYVQVV 79
G+FP +Y +V+
Sbjct: 56 GWFPFSYTRVL 66
>pdb|2KRS|A Chain A, Solution Nmr Structure Of Sh3 Domain From Cpf_0587
(Fragment 415-479) From Clostridium Perfringens.
Northeast Structural Genomics Consortium (Nesg) Target
Cpr74a
Length = 74
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 37 NPGELG-FKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
N G +G + D + ++ VD WYE NG+ GY +Y+ +V
Sbjct: 20 NYGVIGTLRNNDKVEIIKEVD-GWYEIRFNGKVGYASKSYITIV 62
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 68
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 83
YDF+ N EL K+ D + +++ + W G+ GY P ++ P P
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYN---ILTPYP 64
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76
P L+DF+ EL F+ GD + + ++ W+ L+ G YV
Sbjct: 11 PKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYV 62
>pdb|2KYM|A Chain A, Solution Structure Of The Bem1p Sh3-Ci Domain From
L.Elongisporus In Complex With Ste20p Peptide
Length = 120
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LN--GRTGYFPVTYVQVV 79
LY+F+ E EL G+ +++ D W+ +N G G PV+YV+++
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 25 PCCTALYDFEPE-NPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPVTYVQ 77
P A YDF +P EL K+GD I + W G L + G+ P Y++
Sbjct: 1 PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 64
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 31 YDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 83
YDF+ N EL K+ D + +++ + W G+ GY P ++ P P
Sbjct: 14 YDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYN---ILTPYP 63
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 32 DFEPE--NPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 83
DF P + L K+GD I ++++ + G LN + G F YV V+ P
Sbjct: 17 DFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGP 70
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 33 FEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
+ ++ E+GF++G T+ ++ + E W+ G+ G+ P +Y++
Sbjct: 17 YTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWY-EGSLNGRTGYFPVTYVQ 77
A+ DF + G+L FK+G+ + ++ + + W+ G G P TY++
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 41 LGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
L + G+ + + +EG NG+ G+FP T+V+++
Sbjct: 38 LALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 76
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of
C-Crkii
Length = 76
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 60 YEGSLNGRTGYFPVTYVQVV 79
+EG NG+ G+FP T+V+++
Sbjct: 47 WEGECNGKRGHFPFTHVRLL 66
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 29 ALYDFEPEN----PGE-LGFKEGDTITLMNRVDENWYEG 62
AL+D++P P L FK GD + + N D+ W++
Sbjct: 10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQA 48
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 60 YEGSLNGRTGYFPVTYVQVV 79
+EG NG+ G+FP T+V+++
Sbjct: 44 WEGECNGKRGHFPFTHVRLL 63
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 34 EPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTY 75
+P P E K ++TL+N +D YE GR ++ Y
Sbjct: 49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY 90
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A +D+ + EL K+ + + L++ W + +TG+ P YV+
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE 60
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFP 72
LYDF N EL + + + ++ + W S +G+ GY P
Sbjct: 13 LYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVP 55
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77
A +D+ + EL K+ + + L++ W + +TG+ P YV+
Sbjct: 8 VVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVE 59
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVD---ENWYEGSLNGRTGYFPVTYVQVV 79
LY F EL F++G+T+ ++ + + E W + G+ G P YV V+
Sbjct: 23 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 75
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 32 DFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78
+++ + EL + G+ + ++ + + W+ S + G+ P TY++
Sbjct: 16 NYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEA 62
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYVQVVVPL 82
AL DFE P +L + D IT++ EN++ N RT G FP V V L
Sbjct: 283 ALQDFE--EPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVVTSVAGL 337
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVD---ENWYEGSLNGRTGYFPVTYVQVV 79
LY F EL F++G+T+ ++ + + E W + G+ G P YV V+
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 64
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVD---ENWYEGSLNGRTGYFPVTYVQVV 79
LY F EL F++G+T+ ++ + + E W + G+ G P YV V+
Sbjct: 7 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 60
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79
E+ F++ + + + + W NG TG P YVQ++
Sbjct: 23 EISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQLI 62
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYVQVVVPLP 83
A++ F P + EL + D + + + ++ WYE + N RT G FP Y V P
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYE-AYNMRTGARGVFPAYYAIEVTKEP 67
>pdb|2RQV|A Chain A, Solution Structure Of Sh3ci Domain Of Bem1p
Length = 108
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYVQVV 79
LYDF+ E EL G+ + + + W+ GR G PV +V ++
Sbjct: 11 LYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII 63
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYV 76
A++ F P + EL + D + + + ++ WYE + N RT G FP Y
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYE-AYNXRTGARGVFPAYYA 57
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNR-VDENWYE--GSLNGRTGYFPVTYVQV 78
LY + ++ E+ GD I+L+ R W + G TG P TY+++
Sbjct: 7 LYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>pdb|2RQW|A Chain A, Solution Structure Of Bem1p Sh3ci Domain Complexed With
Ste20p-Prr Peptide
Length = 105
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 30 LYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRT---GYFPVTYVQVV 79
LYDF+ E EL G+ + + + W+ GR G PV +V ++
Sbjct: 8 LYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,832,819
Number of Sequences: 62578
Number of extensions: 115232
Number of successful extensions: 587
Number of sequences better than 100.0: 299
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 308
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)