Query psy6836
Match_columns 83
No_of_seqs 114 out of 1034
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 19:40:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.7 1.1E-16 2.3E-21 72.2 5.8 49 29-77 1-49 (49)
2 PF07653 SH3_2: Variant SH3 do 99.7 9.2E-16 2E-20 70.7 6.1 54 26-79 1-55 (55)
3 KOG2070|consensus 99.6 1.2E-15 2.7E-20 94.2 2.5 55 26-80 19-73 (661)
4 KOG1118|consensus 99.5 1.7E-14 3.7E-19 84.8 4.6 60 24-83 306-365 (366)
5 KOG0162|consensus 99.5 3.2E-14 6.9E-19 91.5 5.7 55 24-78 1051-1105(1106)
6 PF00018 SH3_1: SH3 domain; I 99.5 1.2E-13 2.7E-18 61.9 5.0 46 28-73 1-48 (48)
7 KOG4226|consensus 99.4 7.7E-13 1.7E-17 77.2 6.6 55 26-80 109-163 (379)
8 smart00326 SH3 Src homology 3 99.4 1.8E-12 3.9E-17 59.6 6.7 54 26-79 4-58 (58)
9 KOG2199|consensus 99.4 4.8E-14 1E-18 85.3 1.3 57 23-79 214-270 (462)
10 KOG1029|consensus 99.4 5.6E-13 1.2E-17 86.2 3.9 55 25-79 1054-1108(1118)
11 cd00174 SH3 Src homology 3 dom 99.4 4E-12 8.7E-17 57.7 5.7 51 27-77 2-53 (54)
12 KOG4348|consensus 99.4 3.2E-13 7E-18 82.9 2.5 63 18-80 94-156 (627)
13 KOG4225|consensus 99.3 9.1E-12 2E-16 76.3 6.7 56 26-81 232-287 (489)
14 KOG4226|consensus 99.2 2.6E-11 5.7E-16 70.9 3.4 58 26-83 193-253 (379)
15 KOG4348|consensus 99.1 4.6E-11 9.9E-16 73.6 3.2 57 24-80 261-319 (627)
16 KOG2996|consensus 99.1 6.1E-11 1.3E-15 75.3 3.3 55 26-80 807-863 (865)
17 KOG1264|consensus 99.0 9.9E-11 2.2E-15 76.6 1.7 56 26-81 776-832 (1267)
18 KOG2546|consensus 99.0 2.7E-10 5.8E-15 69.9 2.1 55 26-80 425-479 (483)
19 KOG4792|consensus 99.0 1.9E-10 4.1E-15 65.7 1.4 57 25-81 125-182 (293)
20 KOG2856|consensus 99.0 1.3E-10 2.9E-15 70.2 0.2 55 25-79 415-471 (472)
21 KOG4225|consensus 98.9 1.4E-09 3E-14 67.0 3.5 53 26-78 434-488 (489)
22 KOG1029|consensus 98.9 7.6E-10 1.7E-14 72.2 2.3 57 24-80 693-751 (1118)
23 KOG0515|consensus 98.8 3E-09 6.6E-14 67.2 2.1 55 26-80 685-742 (752)
24 KOG1702|consensus 98.6 1.2E-07 2.5E-12 53.8 5.4 55 24-78 207-263 (264)
25 KOG3523|consensus 98.6 2.6E-09 5.7E-14 68.0 -1.3 59 23-81 607-667 (695)
26 KOG3601|consensus 98.6 3.9E-08 8.6E-13 55.7 2.9 58 22-79 161-218 (222)
27 KOG3655|consensus 98.6 1.1E-08 2.4E-13 63.5 0.7 56 24-79 427-483 (484)
28 KOG3875|consensus 98.5 1.1E-08 2.3E-13 60.9 -0.6 56 26-81 270-332 (362)
29 KOG1843|consensus 98.5 1.6E-07 3.4E-12 57.9 3.3 54 25-78 417-472 (473)
30 KOG4773|consensus 98.4 2.8E-08 6E-13 59.9 -0.7 58 26-83 177-234 (386)
31 KOG4278|consensus 98.4 6.4E-07 1.4E-11 58.6 4.2 53 26-79 92-146 (1157)
32 KOG3557|consensus 98.4 7.4E-08 1.6E-12 62.0 -0.2 57 24-81 500-557 (721)
33 KOG3632|consensus 98.2 2.1E-06 4.7E-11 57.9 4.6 58 23-80 1137-1203(1335)
34 KOG4792|consensus 98.2 1.3E-05 2.9E-10 46.4 6.2 54 26-79 229-284 (293)
35 KOG4429|consensus 98.0 8.7E-07 1.9E-11 52.9 -1.0 54 26-79 365-418 (421)
36 KOG2528|consensus 98.0 2.7E-06 5.9E-11 53.0 0.9 55 26-80 4-60 (490)
37 KOG1451|consensus 97.9 2.9E-05 6.3E-10 50.3 4.4 55 25-79 757-812 (812)
38 KOG3775|consensus 97.8 1.9E-05 4.1E-10 48.6 2.5 54 27-80 265-320 (482)
39 KOG0197|consensus 97.7 1.8E-05 3.8E-10 50.1 1.6 56 24-79 11-69 (468)
40 KOG0609|consensus 97.7 1E-05 2.2E-10 51.5 0.1 54 25-78 215-280 (542)
41 KOG4575|consensus 97.6 0.00013 2.7E-09 47.9 4.6 54 26-79 10-65 (874)
42 KOG2222|consensus 97.5 6.4E-06 1.4E-10 52.4 -2.0 53 26-78 550-602 (848)
43 KOG3771|consensus 97.4 0.0003 6.5E-09 44.4 3.7 53 25-77 401-454 (460)
44 KOG3725|consensus 97.3 3.6E-05 7.8E-10 45.4 -0.4 56 24-79 317-374 (375)
45 PF14603 hSH3: Helically-exten 97.1 0.0013 2.7E-08 32.8 3.5 41 38-78 30-71 (89)
46 PF08239 SH3_3: Bacterial SH3 97.0 0.0056 1.2E-07 27.5 5.2 37 41-77 17-55 (55)
47 KOG3601|consensus 96.7 0.00016 3.5E-09 41.4 -1.6 50 27-76 3-53 (222)
48 KOG3812|consensus 96.5 0.0013 2.9E-08 40.5 1.5 47 27-73 61-117 (475)
49 KOG3565|consensus 96.5 0.00043 9.3E-09 45.7 -0.7 57 23-79 577-636 (640)
50 KOG3632|consensus 96.4 0.018 3.9E-07 40.1 6.0 57 25-81 448-512 (1335)
51 smart00287 SH3b Bacterial SH3 96.3 0.022 4.9E-07 26.2 4.7 37 40-76 24-61 (63)
52 PRK10884 SH3 domain-containing 96.3 0.01 2.2E-07 34.2 3.9 39 41-79 48-88 (206)
53 KOG0199|consensus 95.6 0.033 7.2E-07 38.0 4.5 49 29-77 379-430 (1039)
54 KOG2996|consensus 95.0 0.017 3.6E-07 38.2 1.9 44 39-82 625-671 (865)
55 PF06347 SH3_4: Bacterial SH3 93.9 0.27 5.9E-06 22.0 6.9 36 40-76 18-53 (55)
56 PRK13914 invasion associated s 93.8 0.2 4.4E-06 32.6 4.6 39 40-78 102-141 (481)
57 COG3103 SH3 domain protein [Si 92.3 0.51 1.1E-05 27.4 4.4 38 41-78 48-87 (205)
58 KOG0040|consensus 90.9 0.0017 3.7E-08 46.6 -7.4 54 27-80 971-1024(2399)
59 KOG3705|consensus 86.8 1.1 2.3E-05 29.0 3.1 53 26-78 511-565 (580)
60 smart00743 Agenet Tudor-like d 86.5 1.6 3.4E-05 19.9 3.0 22 42-63 2-23 (61)
61 PF12913 SH3_6: SH3 domain of 84.5 2.8 6E-05 19.1 4.7 34 40-73 20-54 (54)
62 PF11302 DUF3104: Protein of u 72.5 7.8 0.00017 18.9 2.8 24 40-63 3-32 (75)
63 KOG4384|consensus 72.1 2.1 4.7E-05 26.9 1.0 53 27-79 139-193 (361)
64 KOG3580|consensus 53.2 28 0.0006 24.2 3.5 49 26-74 506-563 (1027)
65 PRK13545 tagH teichoic acids e 49.3 33 0.00071 23.3 3.4 36 44-79 373-414 (549)
66 COG3807 Uncharacterized protei 44.7 9.5 0.00021 21.3 0.4 34 41-75 59-93 (171)
67 PF05641 Agenet: Agenet domain 38.7 46 0.001 15.5 3.1 21 43-63 1-24 (68)
68 KOG1314|consensus 34.0 65 0.0014 20.8 2.9 40 35-75 328-378 (414)
69 KOG2130|consensus 28.2 1.7E+02 0.0037 18.9 4.2 24 39-66 263-286 (407)
70 PF13621 Cupin_8: Cupin-like d 25.2 90 0.0019 18.0 2.4 21 39-63 209-229 (251)
71 PF04648 MF_alpha: Yeast matin 22.5 43 0.00092 10.5 0.4 7 41-47 4-10 (13)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.70 E-value=1.1e-16 Score=72.16 Aligned_cols=49 Identities=51% Similarity=1.085 Sum_probs=44.2
Q ss_pred EeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeE
Q psy6836 29 ALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQ 77 (83)
Q Consensus 29 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~ 77 (83)
|+++|.+...++|+|.+|+.+.++...+.+||.++..|+.|+||.+|++
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 5799999999999999999999998888999999999999999999985
No 2
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.65 E-value=9.2e-16 Score=70.70 Aligned_cols=54 Identities=41% Similarity=0.941 Sum_probs=47.3
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEE-EeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLM-NRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
+++++++|.+....+|+|.+||.+.++ .....+||.++..|+.||||.+|++++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 666779999999999999999999864
No 3
>KOG2070|consensus
Probab=99.57 E-value=1.2e-15 Score=94.25 Aligned_cols=55 Identities=42% Similarity=0.852 Sum_probs=52.0
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
.++|.|+|.+...++|+|.+||+|.|.+..++|||.|+.+|++||||++||.++.
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 5889999999999999999999999999999999999999999999999998763
No 4
>KOG1118|consensus
Probab=99.52 E-value=1.7e-14 Score=84.82 Aligned_cols=60 Identities=72% Similarity=1.377 Sum_probs=56.2
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEccCCC
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 83 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~~~~ 83 (83)
.+.|+++|+|++....+|.|+.||+|.++...+.+||.|+..|..|+||.+|++.+.++|
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvpl~ 365 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVPLP 365 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEeccCC
Confidence 457999999999999999999999999999889999999999999999999999988765
No 5
>KOG0162|consensus
Probab=99.52 E-value=3.2e-14 Score=91.53 Aligned_cols=55 Identities=44% Similarity=0.900 Sum_probs=52.1
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEE
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~ 78 (83)
.+.|.++|+|.++..+||+|.+|+++.++.++..|||.++..|.+||||.+|+.+
T Consensus 1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 3679999999999999999999999999999999999999999999999999975
No 6
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.49 E-value=1.2e-13 Score=61.88 Aligned_cols=46 Identities=41% Similarity=0.951 Sum_probs=40.9
Q ss_pred EEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEe--CCeEEEEcC
Q psy6836 28 TALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSL--NGRTGYFPV 73 (83)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~--~g~~g~~P~ 73 (83)
+|+|+|.+...++|+|.+||.+.|+...+.+||.++. .+..|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 5799999999999999999999999998889999993 379999995
No 7
>KOG4226|consensus
Probab=99.43 E-value=7.7e-13 Score=77.20 Aligned_cols=55 Identities=31% Similarity=0.729 Sum_probs=51.5
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
.+.+.|.|.+...++|++.+|+.+.++++..+|||+|..+|+.||||++|+.+..
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ 163 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEV 163 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhc
Confidence 4778899999999999999999999999999999999999999999999998754
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.43 E-value=1.8e-12 Score=59.60 Aligned_cols=54 Identities=43% Similarity=0.981 Sum_probs=48.6
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeC-CeEEEEcCCCeEEc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLN-GRTGYFPVTYVQVV 79 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-g~~g~~P~~~~~~~ 79 (83)
.++++++|.+....+|++.+||.+.++.....+||.++.. ++.|+||.+|++.+
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 5789999999999999999999999998878899999955 99999999998753
No 9
>KOG2199|consensus
Probab=99.42 E-value=4.8e-14 Score=85.29 Aligned_cols=57 Identities=39% Similarity=0.714 Sum_probs=52.3
Q ss_pred CCCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
....++++|||++.+..||+|.+||+|.|+......||+|+..+..|+||++||...
T Consensus 214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD 270 (462)
T ss_pred cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence 345799999999999999999999999999999999999999889999999998753
No 10
>KOG1029|consensus
Probab=99.37 E-value=5.6e-13 Score=86.20 Aligned_cols=55 Identities=42% Similarity=0.851 Sum_probs=51.4
Q ss_pred CEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
.++.++|||.++..++|+|.+||+|.|+.+++..||.|+.+|..|.||+|||...
T Consensus 1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 4678999999999999999999999999999999999999999999999999654
No 11
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.37 E-value=4e-12 Score=57.70 Aligned_cols=51 Identities=45% Similarity=1.032 Sum_probs=45.7
Q ss_pred EEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCC-eEEEEcCCCeE
Q psy6836 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNG-RTGYFPVTYVQ 77 (83)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g-~~g~~P~~~~~ 77 (83)
++++++|.+....+|+|.+||.+.++.....+||.++..+ ..|+||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 5789999999999999999999999988778999999544 89999999875
No 12
>KOG4348|consensus
Probab=99.36 E-value=3.2e-13 Score=82.86 Aligned_cols=63 Identities=37% Similarity=0.808 Sum_probs=56.5
Q ss_pred CCCCCCCCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 18 TPVVNKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
.+...+...|++.|.|..+..++|.|+.||++.++.+...|||.|..+|..|+||+|++.++.
T Consensus 94 ~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 94 PPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP 156 (627)
T ss_pred CCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence 334445668999999999999999999999999999999999999999999999999998874
No 13
>KOG4225|consensus
Probab=99.31 E-value=9.1e-12 Score=76.30 Aligned_cols=56 Identities=46% Similarity=1.048 Sum_probs=53.1
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEccC
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVP 81 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~~ 81 (83)
-++++|+|+++...+|.|.+||++.|+.+.+..|+.|+..|+.|+||.+|++.+..
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 37889999999999999999999999999999999999999999999999998865
No 14
>KOG4226|consensus
Probab=99.17 E-value=2.6e-11 Score=70.92 Aligned_cols=58 Identities=31% Similarity=0.713 Sum_probs=52.0
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeC--CCCeEEEE-eCCeEEEEcCCCeEEccCCC
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGS-LNGRTGYFPVTYVQVVVPLP 83 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--~~~~~~~~-~~g~~g~~P~~~~~~~~~~~ 83 (83)
.++++|.|.+....+|+|.+|+.+.|+.+. +..||.++ ..|+.|.+|.+|+..+.+.|
T Consensus 193 vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~ 253 (379)
T KOG4226|consen 193 VVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGP 253 (379)
T ss_pred EEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCc
Confidence 577899999999999999999999999875 55799999 89999999999999987654
No 15
>KOG4348|consensus
Probab=99.13 E-value=4.6e-11 Score=73.65 Aligned_cols=57 Identities=40% Similarity=0.874 Sum_probs=51.4
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeC--CCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
..+|+++|.|+++..++|.++.||++.++.++ +.|||.|+.+|..|.||-|++..+.
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 45899999999999999999999999988875 5589999999999999999987664
No 16
>KOG2996|consensus
Probab=99.11 E-value=6.1e-11 Score=75.30 Aligned_cols=55 Identities=42% Similarity=0.851 Sum_probs=48.6
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeC--CCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
.+++-|||.+..-.+|+|..||++.++... +.|||+|+.+|+.||||++||++-.
T Consensus 807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 467778999988889999999999998876 3699999999999999999998753
No 17
>KOG1264|consensus
Probab=99.02 E-value=9.9e-11 Score=76.65 Aligned_cols=56 Identities=32% Similarity=0.746 Sum_probs=51.0
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCe-EEEEcCCCeEEccC
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGR-TGYFPVTYVQVVVP 81 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~-~g~~P~~~~~~~~~ 81 (83)
.++|+|+|.+...++|+|.++-++..+++.++|||+|...|. .+|||++||+++.+
T Consensus 776 t~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 776 TVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 588999999999999999999999999998889999997754 79999999998754
No 18
>KOG2546|consensus
Probab=98.98 E-value=2.7e-10 Score=69.85 Aligned_cols=55 Identities=36% Similarity=0.788 Sum_probs=51.6
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
+++++|+|.+...++|+|..+-++.++.+++++||.+-..|.+|+||.+|++.++
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 4678999999999999999999999999999999999999999999999998875
No 19
>KOG4792|consensus
Probab=98.97 E-value=1.9e-10 Score=65.74 Aligned_cols=57 Identities=30% Similarity=0.723 Sum_probs=51.4
Q ss_pred CEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE-eCCeEEEEcCCCeEEccC
Q psy6836 25 PCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQVVVP 81 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~g~~g~~P~~~~~~~~~ 81 (83)
.++.++|+|.+....+|.|++|+++.|+.+.+..||..+ ..|..|.+|..|++..++
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~ 182 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRP 182 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhh
Confidence 357789999999999999999999999999888999999 899999999999876543
No 20
>KOG2856|consensus
Probab=98.95 E-value=1.3e-10 Score=70.24 Aligned_cols=55 Identities=35% Similarity=0.786 Sum_probs=48.3
Q ss_pred CEEEEeecCCCCCCCceeecCCCEEEEEEeC-CCCeEEEEe-CCeEEEEcCCCeEEc
Q psy6836 25 PCCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSL-NGRTGYFPVTYVQVV 79 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~-~g~~g~~P~~~~~~~ 79 (83)
..++++|||.++..++|+|+.|+.+..+.+. ..||..|+. .|+.|++|.+||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 3688999999999999999999999877664 669999995 499999999999764
No 21
>KOG4225|consensus
Probab=98.91 E-value=1.4e-09 Score=67.00 Aligned_cols=53 Identities=40% Similarity=0.847 Sum_probs=49.6
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE--eCCeEEEEcCCCeEE
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQV 78 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~--~~g~~g~~P~~~~~~ 78 (83)
.++|+|.|.++..++|.|..||++.|+++.++||..|. +.|.-|.||.+||+.
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 47999999999999999999999999999999999994 899999999999964
No 22
>KOG1029|consensus
Probab=98.90 E-value=7.6e-10 Score=72.20 Aligned_cols=57 Identities=35% Similarity=0.744 Sum_probs=50.1
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeC--CCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
..+|+++|.|++.+.++++|..||++.|-... ..||..|...|..||||.+|++.+.
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~ 751 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIP 751 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcc
Confidence 34799999999999999999999999776553 5699999999999999999998764
No 23
>KOG0515|consensus
Probab=98.79 E-value=3e-09 Score=67.21 Aligned_cols=55 Identities=36% Similarity=0.746 Sum_probs=48.6
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeC---CCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRV---DENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~---~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
.+-++|||++...++|+|..||.+.|+.++ +..||-++.+|++|+||.+|+....
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP 742 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence 477899999999999999999999999874 3469989999999999999987653
No 24
>KOG1702|consensus
Probab=98.64 E-value=1.2e-07 Score=53.75 Aligned_cols=55 Identities=29% Similarity=0.706 Sum_probs=48.4
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE--eCCeEEEEcCCCeEE
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQV 78 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~--~~g~~g~~P~~~~~~ 78 (83)
+..++++|||.++..++++|.-||.|.-....++||.-+. ..|.+|..|.+|++-
T Consensus 207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 4568999999999999999999999987777778888776 789999999999864
No 25
>KOG3523|consensus
Probab=98.64 E-value=2.6e-09 Score=68.04 Aligned_cols=59 Identities=24% Similarity=0.675 Sum_probs=53.4
Q ss_pred CCCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE--eCCeEEEEcCCCeEEccC
Q psy6836 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVVVP 81 (83)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~--~~g~~g~~P~~~~~~~~~ 81 (83)
..+++.+...|.+...++|.+..+|++.++++..+||+.|. .+|..||||.+|+++|.+
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 45578888999999999999999999999999999999998 789999999999988754
No 26
>KOG3601|consensus
Probab=98.60 E-value=3.9e-08 Score=55.70 Aligned_cols=58 Identities=38% Similarity=0.753 Sum_probs=51.8
Q ss_pred CCCCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 22 NKAPCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
....+..+.|++......++.|.+|+.+.++...+..||.|+.-|+.|+||++|+...
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 4455678899999999999999999999999998889999999999999999998653
No 27
>KOG3655|consensus
Probab=98.60 E-value=1.1e-08 Score=63.54 Aligned_cols=56 Identities=38% Similarity=0.857 Sum_probs=50.5
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE-eCCeEEEEcCCCeEEc
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQVV 79 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~g~~g~~P~~~~~~~ 79 (83)
...+.++|+|.+....+++|..++.+.+|...+.|||.+. ..|..|+||.+||+.+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 3458899999999999999999999999988889999999 7899999999999754
No 28
>KOG3875|consensus
Probab=98.53 E-value=1.1e-08 Score=60.90 Aligned_cols=56 Identities=32% Similarity=0.577 Sum_probs=46.8
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeC-----CCCeEEEE-e-CCeEEEEcCCCeEEccC
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRV-----DENWYEGS-L-NGRTGYFPVTYVQVVVP 81 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~-----~~~~~~~~-~-~g~~g~~P~~~~~~~~~ 81 (83)
.++++|||.+....|++|++||.+.|..++ ...||..+ . .+..|+||.+|++.+..
T Consensus 270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 588999999999999999999999887653 23488877 4 56789999999988754
No 29
>KOG1843|consensus
Probab=98.48 E-value=1.6e-07 Score=57.86 Aligned_cols=54 Identities=43% Similarity=0.910 Sum_probs=48.4
Q ss_pred CEEEEeecCCCCCCCceeecCCCEEEEEEeC--CCCeEEEEeCCeEEEEcCCCeEE
Q psy6836 25 PCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQV 78 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--~~~~~~~~~~g~~g~~P~~~~~~ 78 (83)
..+.++|+|.+.....+.|++||+|.++.+. ...||.++.++.+|+||.+|++.
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 3688999999999999999999999988875 34799999999999999999863
No 30
>KOG4773|consensus
Probab=98.43 E-value=2.8e-08 Score=59.90 Aligned_cols=58 Identities=31% Similarity=0.608 Sum_probs=52.3
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEccCCC
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVVPLP 83 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~~~~ 83 (83)
...++++|.++...+|.|..|+.+.++.+++.+||.|...+.+||+|.+|+..+..+|
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fp 234 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFP 234 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCc
Confidence 4667899999999999999999999999999999999999999999999988776554
No 31
>KOG4278|consensus
Probab=98.36 E-value=6.4e-07 Score=58.65 Aligned_cols=53 Identities=28% Similarity=0.631 Sum_probs=45.4
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCC-CCeEEEE-eCCeEEEEcCCCeEEc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVD-ENWYEGS-LNGRTGYFPVTYVQVV 79 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~-~~g~~g~~P~~~~~~~ 79 (83)
-++++|||.+.....|++.+|+.++++.-.. ..|...+ .+|+ ||+|++|...+
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPv 146 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPV 146 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccc
Confidence 5789999999999999999999999998874 4577777 6666 99999998765
No 32
>KOG3557|consensus
Probab=98.35 E-value=7.4e-08 Score=61.97 Aligned_cols=57 Identities=28% Similarity=0.662 Sum_probs=49.7
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE-eCCeEEEEcCCCeEEccC
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQVVVP 81 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~g~~g~~P~~~~~~~~~ 81 (83)
+..+++.|||.+....+|++.++++++++.+ ...||.++ ..|+.|++|++.+..+.+
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~ 557 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQP 557 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCC
Confidence 4478889999999999999999999998877 46799999 889999999998877643
No 33
>KOG3632|consensus
Probab=98.24 E-value=2.1e-06 Score=57.91 Aligned_cols=58 Identities=34% Similarity=0.638 Sum_probs=48.8
Q ss_pred CCCEEEEeecCCCC--------CCCceeecCCCEEEEEEeC-CCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 23 KAPCCTALYDFEPE--------NPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 23 ~~~~~~~~~~~~~~--------~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
+...++++|||... ...||.|+.|++|.|+.+. .+|++.++.+|+.|+||+++|.++.
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence 34578899999863 3458999999999998875 5689999999999999999998863
No 34
>KOG4792|consensus
Probab=98.17 E-value=1.3e-05 Score=46.37 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=46.0
Q ss_pred EEEEeecCCCC--CCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 26 CCTALYDFEPE--NPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 26 ~~~~~~~~~~~--~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
+++++++.... ....|.+++|+++.+......|.|.++++|+.|.||..||+-+
T Consensus 229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred heeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence 57777776554 4457999999999999998889999999999999999999764
No 35
>KOG4429|consensus
Probab=97.97 E-value=8.7e-07 Score=52.85 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=47.0
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
.|.+.|+|.+...++|...+|++..+-.....|||.|+..|..+-||..+++++
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 578899999999999999999998776666889999999998888888887654
No 36
>KOG2528|consensus
Probab=97.95 E-value=2.7e-06 Score=53.01 Aligned_cols=55 Identities=38% Similarity=0.726 Sum_probs=48.9
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeC-CCCeEEEE-eCCeEEEEcCCCeEEcc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGS-LNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~-~~g~~g~~P~~~~~~~~ 80 (83)
..+++|+|......+++...++.+.+.... ..|||.+. ..|.+|.||.+|++.++
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 467899999999999999999999988876 67899998 89999999999998764
No 37
>KOG1451|consensus
Probab=97.87 E-value=2.9e-05 Score=50.34 Aligned_cols=55 Identities=31% Similarity=0.637 Sum_probs=46.1
Q ss_pred CEEEEeecCCCCCCCceeecCCCEEEEEE-eCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 25 PCCTALYDFEPENPGELGFKEGDTITLMN-RVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
..+..++...+....+++|..|.++.-.. ....||..|+.+|.+|.+|.+||+.+
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 35667788888888899999999987555 44779999999999999999999753
No 38
>KOG3775|consensus
Probab=97.78 E-value=1.9e-05 Score=48.64 Aligned_cols=54 Identities=33% Similarity=0.696 Sum_probs=46.3
Q ss_pred EEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE--eCCeEEEEcCCCeEEcc
Q psy6836 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~--~~g~~g~~P~~~~~~~~ 80 (83)
-++++.|.....++|.+.+||.+.|....++.|..+. +.|+.|+||+.|..++.
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 3457778889999999999999988777777888887 89999999999988774
No 39
>KOG0197|consensus
Probab=97.71 E-value=1.8e-05 Score=50.09 Aligned_cols=56 Identities=30% Similarity=0.746 Sum_probs=48.2
Q ss_pred CCEEEEeecCCCCCCCceeecCCCE-EEEEEeCCCCeEEEE--eCCeEEEEcCCCeEEc
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDT-ITLMNRVDENWYEGS--LNGRTGYFPVTYVQVV 79 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~--~~g~~g~~P~~~~~~~ 79 (83)
...+.++++|.+....+|+|.+|+. ..++...+..||..+ ..+..|++|.||+...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 4478999999999999999999999 667777778899987 4788999999999863
No 40
>KOG0609|consensus
Probab=97.66 E-value=1e-05 Score=51.52 Aligned_cols=54 Identities=28% Similarity=0.626 Sum_probs=43.5
Q ss_pred CEEEEeecCCCCCCC-------ceeecCCCEEEEEEeCCCCeEEEEeC-----CeEEEEcCCCeEE
Q psy6836 25 PCCTALYDFEPENPG-------ELGFKEGDTITLMNRVDENWYEGSLN-----GRTGYFPVTYVQV 78 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~-------~l~~~~g~~~~~~~~~~~~~~~~~~~-----g~~g~~P~~~~~~ 78 (83)
.+++|+|||...... .+.|.+||++.+++.++..||+++.. +..|.+|+..+.+
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 578899999986553 69999999999999999999999833 3468888866543
No 41
>KOG4575|consensus
Probab=97.64 E-value=0.00013 Score=47.86 Aligned_cols=54 Identities=31% Similarity=0.577 Sum_probs=45.7
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE-e-CCeEEEEcCCCeEEc
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS-L-NGRTGYFPVTYVQVV 79 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~-~g~~g~~P~~~~~~~ 79 (83)
.++|.|.+.+...++|-|..||+++.+...+..||... . ....|+||++++..+
T Consensus 10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 10 MVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred eEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 48899999999999999999999998888777777776 3 445799999999765
No 42
>KOG2222|consensus
Probab=97.55 E-value=6.4e-06 Score=52.36 Aligned_cols=53 Identities=42% Similarity=0.796 Sum_probs=46.6
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEE
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQV 78 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~ 78 (83)
.++++-||.-...++|-|.+.|++.+++..+.--|.|+.+|-+||||..+|+.
T Consensus 550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvel 602 (848)
T KOG2222|consen 550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVEL 602 (848)
T ss_pred HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHH
Confidence 46778888888899999999999999998777889999999999999877654
No 43
>KOG3771|consensus
Probab=97.37 E-value=0.0003 Score=44.43 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=42.9
Q ss_pred CEEEEeecCCCCCCCceeecCCCEEEEEEeC-CCCeEEEEeCCeEEEEcCCCeE
Q psy6836 25 PCCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYVQ 77 (83)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~g~~g~~P~~~~~ 77 (83)
..++++++|.+...++|+|..|+.|.++... ...||.|...|..+-++..|+.
T Consensus 401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred cceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 3688999999999999999999999988855 3468888877776666666654
No 44
>KOG3725|consensus
Probab=97.34 E-value=3.6e-05 Score=45.43 Aligned_cols=56 Identities=27% Similarity=0.558 Sum_probs=48.2
Q ss_pred CCEEEEeecCCCCCCCceeecCCCEEEEEEeC--CCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 24 APCCTALYDFEPENPGELGFKEGDTITLMNRV--DENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
...++++|||.+....++++-..+++.+.+.. +..|..++..++.|-+|..|++.+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 44789999999999999999999999888765 457999998888999999988654
No 45
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=97.09 E-value=0.0013 Score=32.77 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCceeecCCCEEEEEEeCCCCeEEEE-eCCeEEEEcCCCeEE
Q psy6836 38 PGELGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTYVQV 78 (83)
Q Consensus 38 ~~~l~~~~g~~~~~~~~~~~~~~~~~-~~g~~g~~P~~~~~~ 78 (83)
...|.+..|+.+.+++..+..-|.|+ ..|.-|+++.+++-.
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~ 71 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLP 71 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS--
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccC
Confidence 45799999999999999988999999 899999999888743
No 46
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=97.01 E-value=0.0056 Score=27.52 Aligned_cols=37 Identities=22% Similarity=0.676 Sum_probs=29.7
Q ss_pred eeecCCCEEEEEEeCCCC-eEEEE-eCCeEEEEcCCCeE
Q psy6836 41 LGFKEGDTITLMNRVDEN-WYEGS-LNGRTGYFPVTYVQ 77 (83)
Q Consensus 41 l~~~~g~~~~~~~~~~~~-~~~~~-~~g~~g~~P~~~~~ 77 (83)
-.+..|+.+.++.....+ |++.+ .+|..||+...|++
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 456889999998886554 99994 88999999998874
No 47
>KOG3601|consensus
Probab=96.70 E-value=0.00016 Score=41.41 Aligned_cols=50 Identities=34% Similarity=0.669 Sum_probs=41.9
Q ss_pred EEEeecCCCCCCCceeecCCCEEEEEEeC-CCCeEEEEeCCeEEEEcCCCe
Q psy6836 27 CTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPVTYV 76 (83)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~g~~g~~P~~~~ 76 (83)
+.+++++.....+||+|.+|+.+.++... ...|...+..|..|++|.++.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai 53 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAI 53 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccc
Confidence 44677888889999999999999887765 346888899999999998876
No 48
>KOG3812|consensus
Probab=96.54 E-value=0.0013 Score=40.45 Aligned_cols=47 Identities=13% Similarity=0.430 Sum_probs=35.9
Q ss_pred EEEeecCCCCCC-------CceeecCCCEEEEEEeCCCCeEEEE--eC-CeEEEEcC
Q psy6836 27 CTALYDFEPENP-------GELGFKEGDTITLMNRVDENWYEGS--LN-GRTGYFPV 73 (83)
Q Consensus 27 ~~~~~~~~~~~~-------~~l~~~~g~~~~~~~~~~~~~~~~~--~~-g~~g~~P~ 73 (83)
+++..+|.+.-. ..++|...|.+.|-.+.+.+||.|+ .. +..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 334567776543 3699999999999888889999998 34 45799986
No 49
>KOG3565|consensus
Probab=96.53 E-value=0.00043 Score=45.70 Aligned_cols=57 Identities=28% Similarity=0.677 Sum_probs=49.5
Q ss_pred CCCEEEEeecCCCCCCCceeecCCCEEEEEEeC-CCCeEEEE--eCCeEEEEcCCCeEEc
Q psy6836 23 KAPCCTALYDFEPENPGELGFKEGDTITLMNRV-DENWYEGS--LNGRTGYFPVTYVQVV 79 (83)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~--~~g~~g~~P~~~~~~~ 79 (83)
....+.++|.|++...+.++...|+++.++..+ +.||-+++ ..+..|+||.+|+...
T Consensus 577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 344688999999999999999999999988877 67899888 7888999999998764
No 50
>KOG3632|consensus
Probab=96.37 E-value=0.018 Score=40.09 Aligned_cols=57 Identities=32% Similarity=0.619 Sum_probs=45.8
Q ss_pred CEEEEeecCCC------CCCCceeecCCCEEEEEEeC-CCCeEEEE-eCCeEEEEcCCCeEEccC
Q psy6836 25 PCCTALYDFEP------ENPGELGFKEGDTITLMNRV-DENWYEGS-LNGRTGYFPVTYVQVVVP 81 (83)
Q Consensus 25 ~~~~~~~~~~~------~~~~~l~~~~g~~~~~~~~~-~~~~~~~~-~~g~~g~~P~~~~~~~~~ 81 (83)
..+.+.|+|.. ....+|-+..|+.|++.... .+|++.++ ..|+.|.+|+++++.+.+
T Consensus 448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD 512 (1335)
T ss_pred ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence 35677787775 23348999999999998765 67899999 899999999999987654
No 51
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=96.31 E-value=0.022 Score=26.17 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=28.4
Q ss_pred ceeecCCCEEEEEEeCCCCeEEEEe-CCeEEEEcCCCe
Q psy6836 40 ELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYV 76 (83)
Q Consensus 40 ~l~~~~g~~~~~~~~~~~~~~~~~~-~g~~g~~P~~~~ 76 (83)
-..+..|+.+.++...+.+|.+.+. .|..||++..++
T Consensus 24 ~~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 24 IGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred eEEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 3457899999888875548999995 599999976544
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.25 E-value=0.01 Score=34.24 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=32.2
Q ss_pred eeecCCCEEEEEEeCC-CCeEEEE-eCCeEEEEcCCCeEEc
Q psy6836 41 LGFKEGDTITLMNRVD-ENWYEGS-LNGRTGYFPVTYVQVV 79 (83)
Q Consensus 41 l~~~~g~~~~~~~~~~-~~~~~~~-~~g~~g~~P~~~~~~~ 79 (83)
-.+..|+.+.++...+ .+|.+.+ .+|.+||++..|+...
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 5678999999998764 5799998 6889999999887643
No 53
>KOG0199|consensus
Probab=95.58 E-value=0.033 Score=37.98 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=38.8
Q ss_pred EeecCCCCCCCceeecCCCEEEEEEeCC-CCeEEEE--eCCeEEEEcCCCeE
Q psy6836 29 ALYDFEPENPGELGFKEGDTITLMNRVD-ENWYEGS--LNGRTGYFPVTYVQ 77 (83)
Q Consensus 29 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~--~~g~~g~~P~~~~~ 77 (83)
+..+|.....+.|.+.+||.|.|++... ..||++. .++..|.||.+-+.
T Consensus 379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 3344556778899999999999988764 4599985 78888999988776
No 54
>KOG2996|consensus
Probab=95.03 E-value=0.017 Score=38.24 Aligned_cols=44 Identities=27% Similarity=0.574 Sum_probs=33.9
Q ss_pred CceeecCCCEEEEEEeC-CCCeEEEE--eCCeEEEEcCCCeEEccCC
Q psy6836 39 GELGFKEGDTITLMNRV-DENWYEGS--LNGRTGYFPVTYVQVVVPL 82 (83)
Q Consensus 39 ~~l~~~~g~~~~~~~~~-~~~~~~~~--~~g~~g~~P~~~~~~~~~~ 82 (83)
..|.+..|+++.++..+ ...||.++ ..+..|+||++-+.....+
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~v 671 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSV 671 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCC
Confidence 46889999999877665 66899998 4566899999887654433
No 55
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=93.87 E-value=0.27 Score=22.03 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=28.1
Q ss_pred ceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCe
Q psy6836 40 ELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYV 76 (83)
Q Consensus 40 ~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~ 76 (83)
...+..|..+.++.. ..+|.+.+.+|..||+..+.+
T Consensus 18 v~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 356778888877744 668999999999999987654
No 56
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=93.76 E-value=0.2 Score=32.55 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=31.6
Q ss_pred ceeecCCCEEEEEEeCCCCeEEEEe-CCeEEEEcCCCeEE
Q psy6836 40 ELGFKEGDTITLMNRVDENWYEGSL-NGRTGYFPVTYVQV 78 (83)
Q Consensus 40 ~l~~~~g~~~~~~~~~~~~~~~~~~-~g~~g~~P~~~~~~ 78 (83)
--.+..|+.+.++.....+|++.+. +|..||+-..|+..
T Consensus 102 Igsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 102 ITSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 3567899999987644568999996 69999998888764
No 57
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=92.28 E-value=0.51 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=31.1
Q ss_pred eeecCCCEEEEEEeCCC-CeEEEE-eCCeEEEEcCCCeEE
Q psy6836 41 LGFKEGDTITLMNRVDE-NWYEGS-LNGRTGYFPVTYVQV 78 (83)
Q Consensus 41 l~~~~g~~~~~~~~~~~-~~~~~~-~~g~~g~~P~~~~~~ 78 (83)
-+++.|+.+.++...+. +|.+.+ ..|..|||+..++..
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 56789999999988754 799998 688999999866654
No 58
>KOG0040|consensus
Probab=90.87 E-value=0.0017 Score=46.61 Aligned_cols=54 Identities=35% Similarity=0.834 Sum_probs=46.9
Q ss_pred EEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEcc
Q psy6836 27 CTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVVV 80 (83)
Q Consensus 27 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~~ 80 (83)
+.++|+|...++-+.+.++||.+.++...+..||.+++..+.|++|..|+..+.
T Consensus 971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen 971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLD 1024 (2399)
T ss_pred HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhc
Confidence 456788988888899999999998888888999999988888999998887653
No 59
>KOG3705|consensus
Probab=86.83 E-value=1.1 Score=28.96 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=37.4
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeCCCCeEEEE--eCCeEEEEcCCCeEE
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRVDENWYEGS--LNGRTGYFPVTYVQV 78 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~--~~g~~g~~P~~~~~~ 78 (83)
...++++..+....++.++.||++.+-.--=+|.-+|. ..++.|.||+--+++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 46678888888999999999999866443222333443 566789999865554
No 60
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=86.54 E-value=1.6 Score=19.89 Aligned_cols=22 Identities=27% Similarity=0.884 Sum_probs=18.0
Q ss_pred eecCCCEEEEEEeCCCCeEEEE
Q psy6836 42 GFKEGDTITLMNRVDENWYEGS 63 (83)
Q Consensus 42 ~~~~g~~~~~~~~~~~~~~~~~ 63 (83)
.|..|+.+.+....+..||.+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~ 23 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAV 23 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEE
Confidence 4788999988876677899986
No 61
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=84.46 E-value=2.8 Score=19.11 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=22.2
Q ss_pred ceeecCCCEEEEEEeC-CCCeEEEEeCCeEEEEcC
Q psy6836 40 ELGFKEGDTITLMNRV-DENWYEGSLNGRTGYFPV 73 (83)
Q Consensus 40 ~l~~~~g~~~~~~~~~-~~~~~~~~~~g~~g~~P~ 73 (83)
.-.+..|+.+.|++.. +..|..+...-..||+++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 4467889999999887 456888888778899863
No 62
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=72.49 E-value=7.8 Score=18.93 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=15.2
Q ss_pred ceeecCCCEEEEEEeC------CCCeEEEE
Q psy6836 40 ELGFKEGDTITLMNRV------DENWYEGS 63 (83)
Q Consensus 40 ~l~~~~g~~~~~~~~~------~~~~~~~~ 63 (83)
-|.++.|+.+.+.... +..||.+.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEE
Confidence 3667788887544332 35799875
No 63
>KOG4384|consensus
Probab=72.08 E-value=2.1 Score=26.90 Aligned_cols=53 Identities=30% Similarity=0.541 Sum_probs=41.0
Q ss_pred EEEeecCC--CCCCCceeecCCCEEEEEEeCCCCeEEEEeCCeEEEEcCCCeEEc
Q psy6836 27 CTALYDFE--PENPGELGFKEGDTITLMNRVDENWYEGSLNGRTGYFPVTYVQVV 79 (83)
Q Consensus 27 ~~~~~~~~--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~P~~~~~~~ 79 (83)
+.+.-++. ....+++...+++++.++.....+-|.+-+.+..|.|+..|+..+
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI 193 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence 34444444 345668888999999998888888899989999999988888765
No 64
>KOG3580|consensus
Probab=53.22 E-value=28 Score=24.24 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=34.3
Q ss_pred EEEEeecCCCCCCCceeecCCCEEEEEEeC---CCC-eEEEEe-----CCeEEEEcCC
Q psy6836 26 CCTALYDFEPENPGELGFKEGDTITLMNRV---DEN-WYEGSL-----NGRTGYFPVT 74 (83)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~---~~~-~~~~~~-----~g~~g~~P~~ 74 (83)
+.+..|.++......|.|.+|+.+.++... ..| |...+. .-..|++|..
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 456678888888899999999999987653 223 555552 2246888753
No 65
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=49.33 E-value=33 Score=23.31 Aligned_cols=36 Identities=22% Similarity=0.526 Sum_probs=26.3
Q ss_pred cCCCEEEEEEeC-----CCCeEEEE-eCCeEEEEcCCCeEEc
Q psy6836 44 KEGDTITLMNRV-----DENWYEGS-LNGRTGYFPVTYVQVV 79 (83)
Q Consensus 44 ~~g~~~~~~~~~-----~~~~~~~~-~~g~~g~~P~~~~~~~ 79 (83)
.=|+++.+.... +..|.+.. .+|..||+...++..+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (549)
T PRK13545 373 NFGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPF 414 (549)
T ss_pred ecCceEEEcccccccccCcceEEEEecCCccceeeeeeeeec
Confidence 456776665432 33698888 7999999988888765
No 66
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.68 E-value=9.5 Score=21.35 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=24.0
Q ss_pred eeecCCCEEEEEEeCCCCeEEEE-eCCeEEEEcCCC
Q psy6836 41 LGFKEGDTITLMNRVDENWYEGS-LNGRTGYFPVTY 75 (83)
Q Consensus 41 l~~~~g~~~~~~~~~~~~~~~~~-~~g~~g~~P~~~ 75 (83)
+-+++|..++++.+.+ .|-+.+ .+|..||+-.+.
T Consensus 59 ~y~k~GlPVEIvqEy~-~WRrirDadG~egWv~qsl 93 (171)
T COG3807 59 VYLKKGLPVEIVQEYD-NWRRIRDADGTEGWVHQSL 93 (171)
T ss_pred eeeccCCceehhhhhh-hhhheeCCCCCceeeeeec
Confidence 5678898888888753 466666 678888875543
No 67
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=38.69 E-value=46 Score=15.50 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=11.6
Q ss_pred ecCCCEEEEEEeCC---CCeEEEE
Q psy6836 43 FKEGDTITLMNRVD---ENWYEGS 63 (83)
Q Consensus 43 ~~~g~~~~~~~~~~---~~~~~~~ 63 (83)
|++|+.+++....+ ..|+.+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~ 24 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPAT 24 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEE
Confidence 57889998887652 2477775
No 68
>KOG1314|consensus
Probab=33.96 E-value=65 Score=20.85 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCCCCceeecCCCEEEEEEeCCCCeEEEE-----------eCCeEEEEcCCC
Q psy6836 35 PENPGELGFKEGDTITLMNRVDENWYEGS-----------LNGRTGYFPVTY 75 (83)
Q Consensus 35 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-----------~~g~~g~~P~~~ 75 (83)
.....-+++..||.+.+... ...|..+. ....+||||.++
T Consensus 328 c~ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~ 378 (414)
T KOG1314|consen 328 CTDDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNC 378 (414)
T ss_pred CCCCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhcccccccc
Confidence 34455689999999866554 34566662 112469999877
No 69
>KOG2130|consensus
Probab=28.16 E-value=1.7e+02 Score=18.86 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=16.8
Q ss_pred CceeecCCCEEEEEEeCCCCeEEEEeCC
Q psy6836 39 GELGFKEGDTITLMNRVDENWYEGSLNG 66 (83)
Q Consensus 39 ~~l~~~~g~~~~~~~~~~~~~~~~~~~g 66 (83)
-|.....|+.+.| ..|||.+-.+.
T Consensus 263 IEc~q~pGEt~fV----P~GWWHvVlNl 286 (407)
T KOG2130|consen 263 IECLQKPGETMFV----PSGWWHVVLNL 286 (407)
T ss_pred ceeeecCCceEEe----cCCeEEEEecc
Confidence 3566777877755 67899997443
No 70
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=25.15 E-value=90 Score=17.97 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=13.0
Q ss_pred CceeecCCCEEEEEEeCCCCeEEEE
Q psy6836 39 GELGFKEGDTITLMNRVDENWYEGS 63 (83)
Q Consensus 39 ~~l~~~~g~~~~~~~~~~~~~~~~~ 63 (83)
-+..+..||.+.| ..+||...
T Consensus 209 ~~~~l~pGD~Lfi----P~gWwH~V 229 (251)
T PF13621_consen 209 YEVVLEPGDVLFI----PPGWWHQV 229 (251)
T ss_dssp EEEEEETT-EEEE-----TT-EEEE
T ss_pred eEEEECCCeEEEE----CCCCeEEE
Confidence 3577888888865 56788765
No 71
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=22.50 E-value=43 Score=10.54 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.0
Q ss_pred eeecCCC
Q psy6836 41 LGFKEGD 47 (83)
Q Consensus 41 l~~~~g~ 47 (83)
|++..|+
T Consensus 4 L~~~~Gq 10 (13)
T PF04648_consen 4 LRLSPGQ 10 (13)
T ss_pred eeccCCC
Confidence 3444444
Done!