BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6837
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 24 DRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDL--PGTIAYSLVAGDEGKFVLES 81
D ND+PP FA +++ EDV +GT + +VKA D D+ +Y ++ GD G + E
Sbjct: 207 DVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD-GTALFEI 265
Query: 82 SS------GNLKLKDTLDREQKDKYRVQVRASD 108
+S G ++L+ LD E K Y ++V A++
Sbjct: 266 TSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN 298
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAGDE 74
+++ D ND+ P F + T+ E +GT V V A D D P + YS++ G +
Sbjct: 94 IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG-Q 152
Query: 75 GKFVLESSSGNLKLK-DTLDREQKDKYRVQVRASD 108
F +E + +K +DRE K++Y V ++A D
Sbjct: 153 PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKD 187
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK------FVL 79
ND+ P F + E I E+ PVGT V ++ A D D+ + G + F L
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 80 ESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
+++G + ++ +LDRE+ ++V V ASDG
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDG 97
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 10 HKFGVIGCVQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDL--PGTIAY 67
H+ + V +++ D ND+ P+F + I E+ PVGT + V A DPDL G++ Y
Sbjct: 88 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 68 SLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
S F ++S+ G + + LD E Y++ V A+D
Sbjct: 148 SF-QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 187
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 35 FHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK--FVLESSSGNLKLKDTL 92
F T ISED PVG+ V ++ A D D + + V G+E F +E +G + L+ L
Sbjct: 14 FDTYLLISEDTPVGSSVTQLLARDMDN-DPLVFG-VPGEEASRFFAVEPDTGVVWLRQPL 71
Query: 93 DREQKDKYRVQVRASD 108
DRE K ++ V+ SD
Sbjct: 72 DRETKSEFTVEFSVSD 87
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 10 HKFGVIGCVQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDL--PGTIAY 67
H+ + V +++ D ND+ P+F + I E+ PVGT + V A DPDL G++ Y
Sbjct: 88 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 68 SLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
S F ++S+ G + + LD E Y++ V A+D
Sbjct: 148 SF-QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 187
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 35 FHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK--FVLESSSGNLKLKDTL 92
F T ISED PVG+ V ++ A D D + + V+G+E F +E +G + L+ L
Sbjct: 14 FDTYLLISEDTPVGSSVTQLLARDMD-NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPL 71
Query: 93 DREQKDKYRVQVRASD 108
DRE K ++ V+ SD
Sbjct: 72 DRETKSEFTVEFSVSD 87
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 10 HKFGVIGCVQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDL--PGTIAY 67
H+ + V +++ D ND+ P+F + I E+ PVGT + V A DPDL G++ Y
Sbjct: 87 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 146
Query: 68 SLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
S F ++S+ G + + LD E Y++ V A+D
Sbjct: 147 SF-QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 186
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 35 FHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK--FVLESSSGNLKLKDTL 92
F T ISED PVG+ V ++ A D D + + V+G+E F +E +G + L+ L
Sbjct: 13 FDTYLLISEDTPVGSSVTQLLARDMDN-DPLVFG-VSGEEASRFFAVEPDTGVVWLRQPL 70
Query: 93 DREQKDKYRVQVRASD 108
DRE K ++ V+ SD
Sbjct: 71 DRETKSEFTVEFSVSD 86
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 20 LRILDRNDSPPSFA-DFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAGD 73
++I D ND+ P F D +T T+ E VGT V +V A D D P + YS++ G
Sbjct: 94 IKIHDINDNEPIFTKDVYTA-TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG- 151
Query: 74 EGKFVLESSSGNLKLK-DTLDREQKDKYRVQVRASD 108
+ F +ES +G +K +DRE +++Y+V ++A D
Sbjct: 152 QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKD 187
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK-FVLESSSGNLKLKDTLDREQ 96
EYT S+ VG L + D G++ Y L G F++ ++G+++ LDRE+
Sbjct: 12 EYTGSDYQYVGKLHSDQDRGD----GSLKYILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 97 KDKYRVQVRA 106
K Y ++ +A
Sbjct: 68 KPVYILRAQA 77
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 10 HKFGVIGCVQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDL--PGTIAY 67
H+ + V +++ ND+ P+F + I E+ PVGT + V A DPDL G++ Y
Sbjct: 88 HQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 68 SLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
S F ++S+ G + + LD E Y++ V A+D
Sbjct: 148 SF-QPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATD 187
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 35 FHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK--FVLESSSGNLKLKDTL 92
F T ISED PVG+ V ++ A D D + + V+G+E F +E +G + L+ L
Sbjct: 14 FDTYLLISEDTPVGSSVTQLLARDMD-NDPLVFG-VSGEEASRFFAVEPDTGVVWLRQPL 71
Query: 93 DREQKDKYRVQVRASD 108
DRE K ++ V+ SD
Sbjct: 72 DRETKSEFTVEFSVSD 87
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAGDE 74
+++ D ND+PP F + E VGT V +V A D D P + YS++ G +
Sbjct: 95 VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-Q 153
Query: 75 GKFVLESSSGNLKLK-DTLDREQKDKYRVQVRASD 108
F +E+ +G ++ +DRE K++Y V ++A D
Sbjct: 154 PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD 188
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK-FVLESSSGNLKLKDTLDREQ 96
EYT + V VG L + + + D G I Y L G FV++ SGN+ TLDRE+
Sbjct: 13 EYTGPDPVLVGRLHSDIDSGD----GNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 97 KDKYRVQVRASD 108
+ +Y + +A D
Sbjct: 69 RAQYTLMAQAVD 80
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAGDE 74
+++ D ND+ P F ++ E +GT V KV A D D P T+ Y ++ G+E
Sbjct: 92 IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE 151
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDGV 110
F ++ S + LDRE + Y + V+A D +
Sbjct: 152 -YFTVDDSGVIFTARADLDRESQSAYEIIVKAKDAL 186
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAG 72
+ + ++D+ND+ P F ++ E V GT V V A D D L G ++YS++
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Query: 73 DEGK-----FVLESSSGNLKLKDT-LDREQKDKYRVQVRASD 108
D + F + +G + L T LDRE+ +Y + V+A+D
Sbjct: 160 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 201
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 30 PSFAD--FHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK--FVLESSSGN 85
P F + F T ISED PVG+ V ++ A D D + + V+G+E F +E +G
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD-NDPLVFG-VSGEEASRFFAVEPDTGV 64
Query: 86 LKLKDTLDREQKDKYRVQVRASD 108
+ L+ LDRE K ++ V+ SD
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSD 87
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAG 72
+ + ++D+ND+ P F ++ E V GT V V A D D L G ++YS++
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Query: 73 DEGK-----FVLESSSGNLKLKDT-LDREQKDKYRVQVRASD 108
D + F + +G + L T LDRE+ +Y + V+A+D
Sbjct: 309 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 350
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAG 72
+ + + D+ND+ P F E +++E GT V KV A D D IAY++V+
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 73 D-----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
D + F + +G + L LDRE Y + V+A+D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIA----YSLVAGDEG 75
+ + D ND+ P F + + E+ V +A +K D D P T A Y++V +
Sbjct: 209 ITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQ 267
Query: 76 KFVL----ESSSGNLKLKDTLDREQKDKYRVQVRASD 108
+FV+ ++ G LK LD E K +Y + VR +
Sbjct: 268 QFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVEN 304
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKYRVQVRA--SDGVQSAD---VVLTI 119
G F++E +G LK+ LDRE KY + A S+G AD +V+T+
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITV 98
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 97 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 156
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 157 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 196
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 50 GVFIIERETGWLKVTQPLDREAIAKY 75
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 95 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 154
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 155 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 194
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 48 GVFIIERETGWLKVTQPLDREAIAKY 73
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 157
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 158 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 197
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 51 GVFIIERETGWLKVTQPLDREAIAKY 76
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 157
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 158 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 197
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 51 GVFIIERETGWLKVTQPLDREAIAKY 76
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASD 108
+ F + +G + L LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK-FVLESSSGNLKLKDTLDREQ 96
EYT + V VG L + + + D G I Y L G FV++ SGN+ TLDRE+
Sbjct: 13 EYTGPDPVLVGRLHSDIDSGD----GNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 97 KDKYRVQVRASD 108
+ +Y + +A D
Sbjct: 69 RAQYTLMAQAVD 80
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGD- 73
+ + D+ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 74 ----EGKFVLESSSGNLKLKDT-LDREQKDKYRVQVRASD 108
+ F + +G + + + LDRE Y + V+A+D
Sbjct: 156 ELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAAD 195
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 49 GVFIIERETGWLKVTQPLDREAIAKY 74
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 11 KFGVIGCVQLRIL--DRNDSPPSFADFHTEYTISEDVPVGTLV-------AKVKAIDPDL 61
K G + ++RI+ DRND+ P+F T++E PVGT + ID
Sbjct: 104 KVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGP 163
Query: 62 PGTIAYSLVAGDEGKFVLESS------SGNLKLKDTLDREQKDKYRVQVRASDGVQS 112
G I Y + E ++ +GN+ L+ L+ E K +Y V ++A+D Q+
Sbjct: 164 NGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQN 220
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD--LPGTIAYSLVAGDEGK---FVLE 80
ND+ P F E ++E+ GT + +++A D D + G I Y A E L+
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 81 SSSGNLKLKDTLDREQKDKYRVQVRASDGVQ-----SADVVLTI 119
+SG L + +DRE+ ++ R V A D Q A VVL I
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNI 111
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP----GTIAYSLVA---- 71
+ ++D ND+ P F ++ E GT V V AID D P G + Y +V+
Sbjct: 96 INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPS 155
Query: 72 -GDEGKFVLESSSGN-LKLKDTLDREQKDKYRVQVRASD 108
F + + +G+ + + LDRE+ +Y + ++A+D
Sbjct: 156 TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 20 LRILDRNDSPPSFA--DFHTEYTISEDVPVGTLVAKVKAIDPD 60
+R+ D ND+ P F D+ + + ED+P+GT + +VKA+D D
Sbjct: 312 IRVTDVNDNAPKFELPDYQA-HNVDEDIPLGTSILRVKAMDSD 353
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP----GTIAYSLVAG- 72
+ + ++D ND+ P F ++ E GT V V AID D P G + Y +++
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 73 ----DEGKFVLESSSGN-LKLKDTLDREQKDKYRVQVRASD 108
F + + +G+ + + LDRE+ +Y + ++A+D
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP----GTIAYSLVA---- 71
+ ++D ND+ P F ++ E GT V V AID D P G + Y +++
Sbjct: 96 INVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPS 155
Query: 72 -GDEGKFVLESSSGN-LKLKDTLDREQKDKYRVQVRASD 108
F + + +G+ + + LDRE+ +Y + ++A+D
Sbjct: 156 TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 16 GCVQLRILDRNDSPPS----------FADFHTEYTISEDVPVGTL----VAKVKAIDPDL 61
GC ++ N S P+ F + + I E+ P GT + V+ + P +
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQI 172
Query: 62 PGTIAYSLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRV 102
++AY L+ G+ F S + + LDREQ++KY +
Sbjct: 173 --SVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYEL 211
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVA--- 71
+ + D+ND+ P F + ++ E GT V +V A D D IAY++++
Sbjct: 96 ITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDP 155
Query: 72 --GDEGKFVLESSSGNLKLKDT-LDREQKDKYRVQVRASD 108
D+ F + ++G + + T LDRE Y + V+A+D
Sbjct: 156 ELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ + LDRE+ Y
Sbjct: 49 GVFIIERETGWLKVTEPLDRERIATY 74
>pdb|1WYJ|A Chain A, Solution Structure Of Mouse Protocadherin Beta 14
(26-137)
Length = 125
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 39 YTISEDVPVGTLVAKV-KAIDPDLPGTI---AYSLVAGDEGKFVLESSSGNLKLKDTLDR 94
Y++ E+ G+LV + K + L I A L G++ LE SGNL LK+ LDR
Sbjct: 15 YSVLEETDRGSLVGNLAKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDR 74
Query: 95 EQ 96
E+
Sbjct: 75 EE 76
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 16 GCVQLRI--LDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSL 69
G V+L I +D+ND+ P F + + E P GT V ++ A D D P T + Y++
Sbjct: 89 GPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNI 148
Query: 70 VAGDEGK-----FVLESSSGNLKLKDT---LDRE--QKDKYRVQVRASDGVQSADVVLT 118
+ K F ++ G++ + LDRE + KY + + A D + DV LT
Sbjct: 149 LKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKD-MGGHDVGLT 206
>pdb|1GQW|A Chain A, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GQW|B Chain B, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GY9|A Chain A, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GY9|B Chain B, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1OS7|A Chain A, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|B Chain B, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|C Chain C, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|D Chain D, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OTJ|A Chain A, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|B Chain B, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|C Chain C, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|D Chain D, Crystal Structure Of Apo (Iron-Free) Taud
Length = 283
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 8 LAHKFGVI----------GCVQLRILD-RNDSPPSFADFHTEYTISEDVPVGTLVA 52
LA +FG + G ++ +LD ND+PP ++HT+ T E P G ++A
Sbjct: 60 LAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILA 115
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSLVAGD 73
+++ ++D+ND+ P F + + E P GT V ++ A D D P T + Y++
Sbjct: 94 LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQT 153
Query: 74 EGK-----FVLESSSGNLKL---KDTLDRE--QKDKYRVQVRASDGVQSADVVLT 118
K F ++ G++ LDRE + KY + + A D + DV LT
Sbjct: 154 PDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQD-MAGLDVGLT 207
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 55 KAIDPDLPGTIAYSLVAG-----DEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
K +D D P + L +G F + ++G++ + TLDRE Y++ V +D
Sbjct: 24 KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 53 GVFIIERETGWLKVTQPLDREAIAKY 78
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 74 EGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
+G F + +SG + + LDRE Y++QV +D
Sbjct: 47 KGIFKINENSGEVSVTKALDREAIPSYQLQVETTD 81
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 20 LRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD 60
+ + D+ND+ P F E +++E GT V KV A D D
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ LDRE KY
Sbjct: 51 GVFIIERETGWLKVTQPLDREAIAKY 76
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ + LDRE+ Y
Sbjct: 50 GVFIIERETGWLKVTEPLDRERIATY 75
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ + LDRE+ Y
Sbjct: 50 GVFIIERETGWLKVTEPLDRERIATY 75
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ + LDRE+ Y
Sbjct: 53 GVFIIERETGWLKVTEPLDRERIATY 78
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKY 100
G F++E +G LK+ + LDRE+ Y
Sbjct: 53 GVFIIERETGWLKVTEPLDRERIATY 78
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 55 KAIDPDLPGTIAYSLVAG-----DEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASD 108
K +D D P + L +G F + ++G++ + TLDRE Y++ V +D
Sbjct: 24 KVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 24 DRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAI 57
D +S SF + H EY +E P G V++++AI
Sbjct: 796 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAI 829
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 64 TIAYSLVAG-DEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRA 106
++AY V G D G+ V++ S D + E+ +YRV VRA
Sbjct: 55 SVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRA 98
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 24 DRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAI 57
D +S SF + H EY +E P G V++++AI
Sbjct: 788 DSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAI 821
>pdb|2EA3|A Chain A, Crystal Structure Of Cellulomonas Bogoriensis Chymotrypsin
Length = 189
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 46 PVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKLKDT 91
P GT+ ++ PG SL+AG++ + V SGN + T
Sbjct: 118 PEGTVRGLIRTTVCAEPGDSGGSLLAGNQAQGVTSGGSGNCRTGGT 163
>pdb|2D0S|A Chain A, Crystal Structure Of The Cytochrome C552 From Moderate
Thermophilic Bacterium, Hydrogenophilus Thermoluteolus
Length = 79
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 16 GCVQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVK 55
GC+ +D+ PS+ D +YT DVP LV KVK
Sbjct: 9 GCMACHAIDKKLVGPSYKDVAKKYT-EADVP--KLVEKVK 45
>pdb|3IPC|A Chain A, Structure Of Atu2422-Gaba F77a Mutant Receptor In Complex
With Leucine
Length = 356
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 58 DPDLPGTIAYSLVAGDEGKF 77
DP LPG + Y G +GKF
Sbjct: 324 DPKLPGYVMYEWKKGPDGKF 343
>pdb|3IP5|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Alanine
pdb|3IP6|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Proline
pdb|3IP7|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Valine
pdb|3IP9|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Gaba
pdb|3IPA|A Chain A, Structure Of Atu2422-Gaba Receptor In Complex With Alanine
Length = 356
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 58 DPDLPGTIAYSLVAGDEGKF 77
DP LPG + Y G +GKF
Sbjct: 324 DPKLPGYVMYEWKKGPDGKF 343
>pdb|1GIY|D Chain D, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|DD Chain d, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|D Chain D, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 178
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 43 EDVPVGTLVAKVKAIDPDLPGTIAYSL-----VAGDEGKFVL-ESSSGNLKL 88
E++PVGTLV ++ + P G + + V G EGK+V+ +SG +++
Sbjct: 73 ENIPVGTLVHNIE-LKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRM 123
>pdb|3AMR|A Chain A, Crystal Structures Of Bacillus Subtilis Alkaline Phytase
In Complex With Ca2+, Co2+, Ni2+, Mg2+ And Myo-Inositol
Hexasulfate
pdb|3AMS|A Chain A, Crystal Structures Of Bacillus Subtilis Alkaline Phytase
In Complex With Ca2+, Cd2+, Co2+, Ni2+, Mg2+ And
Myo-Inositol Hexasulfate
Length = 355
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 60 DLPGTIAYSLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDGVQS 112
D+ G Y A D +++ SS GN DR+ K+KY R +DG ++
Sbjct: 230 DIEGLTIY--YAADGKGYLMASSQGNSSYA-IYDRQGKNKYVADFRITDGPET 279
>pdb|2B66|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 173
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 43 EDVPVGTLVAKVKAIDPDLPGTIAYSL-----VAGDEGKFVL-ESSSGNLKL 88
E++PVGTLV ++ + P G + + V G EGK+V+ +SG +++
Sbjct: 73 ENIPVGTLVHNIE-LKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRM 123
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 73 DEGKFVLESSSGNLKL--KDTLDREQKDKYRVQVRASDGVQSADVVLTILN 121
D G + NLK+ KD L R K+KY +D + D++L LN
Sbjct: 42 DRGNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLN 92
>pdb|1T70|A Chain A, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|B Chain B, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|C Chain C, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|D Chain D, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|E Chain E, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|F Chain F, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|G Chain G, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|H Chain H, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
Length = 255
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 22 ILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAI 57
+L+R+D F DFH E T ++ L +V A+
Sbjct: 134 LLERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAV 169
>pdb|1RL2|A Chain A, Ribosomal Protein L2 Rna-Binding Domain From Bacillus
Stearothermophilus
pdb|1RL2|B Chain B, Ribosomal Protein L2 Rna-Binding Domain From Bacillus
Stearothermophilus
pdb|1C04|A Chain A, Identification Of Known Protein And Rna Structures In A 5
A Map Of The Large Ribosomal Subunit From Haloarcula
Marismortui
Length = 137
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 43 EDVPVGTLVAKVKAIDPDLPGTIAYSL-----VAGDEGKFVL 79
E++PVGTLV ++ + P G + + V G EGK+V+
Sbjct: 73 ENIPVGTLVHNIE-LKPGRGGQLVRAAGTSAQVLGKEGKYVI 113
>pdb|487D|I Chain I, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 135
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 43 EDVPVGTLVAKVKAIDPDLPGTIAYSL-----VAGDEGKFVL 79
E++PVGTLV ++ + P G + + V G EGK+V+
Sbjct: 73 ENIPVGTLVHNIE-LKPGRGGQLVRAAGTSAQVLGKEGKYVI 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,431,806
Number of Sequences: 62578
Number of extensions: 127713
Number of successful extensions: 409
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 97
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)