RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6837
(122 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 92.7 bits (231), Expect = 7e-25
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 26 NDSPPSFAD--FHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDE-GKFVLESS 82
+ P F + F T ISED PVG+ V ++ A D D + + + + F +E
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN-DPLVFGVSGEEASRFFAVEPD 60
Query: 83 SGNLKLKDTLDREQKDKYRVQVRASDGVQSADVVLTI 119
+G + L+ LDRE K ++ V+ SD + I
Sbjct: 61 TGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNI 97
Score = 86.5 bits (215), Expect = 2e-22
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 18 VQLRILDRNDSPPSFADFHTEYT--ISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD 73
V +++ D ND+ P+F + Y+ I E+ PVGT + V A DPDL G++ YS
Sbjct: 95 VNIQVGDVNDNAPTFH--NQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS 152
Query: 74 EGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
F ++S+ G + + LD E Y++ V A+D
Sbjct: 153 P-FFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 187
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 91.9 bits (228), Expect = 4e-24
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 16 GCVQLRILDRNDSPP----------SFADFHTEYTISEDVPVGTLVAKVKAIDPDLP--G 63
GC ++ N S P F + + I E+ P GT L
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQI 172
Query: 64 TIAYSLVAGDEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDGV----QSADVVLTI 119
++AY L+ G+ F S + + LDREQ++KY + + + V +
Sbjct: 173 SVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPV 232
Score = 58.8 bits (142), Expect = 1e-11
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 40 TISEDVPVGTLVAKVKAIDPDLP----GTIAYSLVA------GDEGKFVLESSSGNLKLK 89
+ D GT + V A+ + L + ++ +G L L+
Sbjct: 11 KLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQ 70
Query: 90 DTLDREQKDKYRVQVRAS 107
+LD +K V+ R
Sbjct: 71 RSLDHSSWEKLSVRNRGF 88
Score = 28.7 bits (64), Expect = 0.42
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 18 VQLRILDRNDSPPSFAD 34
+ + D +DS P F +
Sbjct: 230 FPVTVYDEDDSAPEFEN 246
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 93.5 bits (233), Expect = 7e-24
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 18 VQLRILDRNDSPPSFADFHTEY--TISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDE- 74
V + + D ND PP F + + + P T V ++A DPD I Y +V
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTG 156
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
G+F ++ SG ++ + T + +Y + V+A D
Sbjct: 157 GRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ 191
Score = 81.2 bits (201), Expect = 2e-19
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 18 VQLRILDRNDSPPSFA-DFHTEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGDE 74
+ +R+ D ND+ P F + + + ED+P+GT + +VKA+D D I Y + +
Sbjct: 310 LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS---D 366
Query: 75 GKFVLESSSGNLKLKDTLDREQ-KDKYRVQVRASDG---VQSADVVLTIL 120
F + S+G + LD + Y V A D +S + +
Sbjct: 367 DHFAV-DSNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVY 415
Score = 78.1 bits (193), Expect = 2e-18
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAG--DEG 75
+L I+ P F E I E+ + + +KA I Y+L A G
Sbjct: 206 ERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA-DREIRYTLKAQGQGAG 263
Query: 76 KFVLESSSGNLKLKDTLDRE---QKDKYRVQVRASDGV--QSADVVLTI 119
F + +SG +KL LD E Q Y + V A++ S V LTI
Sbjct: 264 TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTI 312
Score = 45.4 bits (108), Expect = 8e-07
Identities = 10/99 (10%), Positives = 29/99 (29%), Gaps = 23/99 (23%)
Query: 41 ISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD---------EGKFVLESSSGNLKLK 89
++ V +++ + D G + L + +V ++G +++K
Sbjct: 4 VTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 90 DTLDREQKDKYRVQ------VRASDG---VQSADVVLTI 119
D E+ + + + + I
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVII 99
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 87.8 bits (218), Expect = 5e-23
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT-----IAYSLVAG 72
+++ D ND+ P F ++ E +GT V KV A D D P + Y ++ G
Sbjct: 90 FIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG 149
Query: 73 DEGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
+E F ++ S + LDRE + Y + V+A D
Sbjct: 150 NE-YFTVDDSGVIFTARADLDRESQSAYEIIVKAKDA 185
Score = 65.0 bits (159), Expect = 3e-14
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 43 EDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDE-GKFVLESSSGNLKLKDTLDREQKDKYR 101
D P+ V K+ + + Y + F ++ G++ + LDRE+K +Y
Sbjct: 13 IDSPLPHHVGKLTSSVGN--KNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYE 70
Query: 102 VQVRASDG 109
+ D
Sbjct: 71 LTAHIIDR 78
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 89.4 bits (222), Expect = 8e-23
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 18 VQLRILDRNDSPPSFADFHTEY--TISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDE- 74
V + + D ND PP F + + + P T V ++A DPD I Y +V
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTG 151
Query: 75 GKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
G+F ++ SG ++ + T + +Y + V+A D
Sbjct: 152 GRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ 186
Score = 80.1 bits (198), Expect = 2e-19
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDE--G 75
+L I+ P F E I E+ + + +KA I Y+L A + G
Sbjct: 201 ERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA-DREIRYTLKAQGQGAG 258
Query: 76 KFVLESSSGNLKLKDTLDRE---QKDKYRVQVRASD--GVQSADVVLTI 119
F + +SG +KL LD E Q Y + V A++ G S V LTI
Sbjct: 259 TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTI 307
Score = 47.4 bits (113), Expect = 1e-07
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 22/92 (23%)
Query: 51 VAKVKAIDPDLP--GTIAYSLVAGD---------EGKFVLESSSGNLKLKDTLDREQKDK 99
+++ + D G + L + +V ++G +++K D E+
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 100 YR------VQVRASDG-----VQSADVVLTIL 120
+ + + V++ +
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVK 97
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 86.6 bits (215), Expect = 2e-22
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT-----IAYSLVAG 72
+++ D ND+PP F + E VGT V +V A D D P + YS++ G
Sbjct: 93 FIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG 152
Query: 73 DEGKFVLESSSGNLKL-KDTLDREQKDKYRVQVRASDG 109
F +E+ +G ++ +DRE K++Y V ++A D
Sbjct: 153 QP-YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDM 189
Score = 69.6 bits (171), Expect = 6e-16
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDLP-GTIAYSLVA-GDEGKFVLESSSGNLKLKDTLDREQ 96
+ I E ++ D D G I Y L G FV++ SGN+ TLDRE+
Sbjct: 9 FVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 97 KDKYRVQVRASDG 109
+ +Y + +A D
Sbjct: 69 RAQYTLMAQAVDR 81
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 84.7 bits (210), Expect = 7e-22
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT-----IAYSLVAG 72
++I D ND+ P F T+ E VGT V +V A D D P + YS++ G
Sbjct: 92 FIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151
Query: 73 DEGKFVLESSSGNLKLKD-TLDREQKDKYRVQVRASDG 109
F +ES +G +K +DRE +++Y+V ++A D
Sbjct: 152 QP-YFSVESETGIIKTALLNMDRENREQYQVVIQAKDM 188
Score = 67.7 bits (166), Expect = 2e-15
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDLP-GTIAYSLVA-GDEGKFVLESSSGNLKLKDTLDREQ 96
+ + E D D G++ Y L G F++ ++G+++ LDRE+
Sbjct: 8 FLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE 67
Query: 97 KDKYRVQVRASDG 109
K Y ++ +A +
Sbjct: 68 KPVYILRAQAVNR 80
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 83.9 bits (208), Expect = 1e-20
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYT--ISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD 73
+ + + D ND+PP FA + Y + EDV +GT + +VKA D D+ +Y ++ GD
Sbjct: 201 LTVTLTDVNDNPPKFA--QSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD 258
Query: 74 E-GKFVLESS----SGNLKLKDTLDREQKDKYRVQVRASDG 109
F + S G ++L+ LD E K Y ++V A++
Sbjct: 259 GTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANI 299
Score = 83.1 bits (206), Expect = 2e-20
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAG 72
+++ D ND+ P F + T+ E +GT V V A D D P + YS++ G
Sbjct: 92 FIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG 151
Query: 73 DEGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASDG 109
F +E + +K +DRE K++Y V ++A D
Sbjct: 152 QP-YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDM 188
Score = 68.5 bits (168), Expect = 5e-15
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDLP-GTIAYSLVAGDEGK-FVLESSSGNLKLKDTLDREQ 96
+ + E ++ D D I Y L G F + +G++ LDRE+
Sbjct: 8 FVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 97 KDKYRVQVRASDG 109
K +Y + +A D
Sbjct: 68 KAEYTLTAQAVDF 80
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 82.0 bits (203), Expect = 1e-20
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSLVAGD 73
+ + ++D ND+ P F ++ E GT V V AID D P + Y +++
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 74 -----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASDG 109
F + + +G++ + LDRE+ +Y + ++A+D
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDM 195
Score = 65.8 bits (161), Expect = 2e-14
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 37 TEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-----EGKFVLESSSGNLKLK 89
+ E+ G ++ I D ++ YS+ G F++ SG L +
Sbjct: 5 PPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 90 DTLDREQKDKYRVQVRASDG 109
LDRE ++ ++ A D
Sbjct: 64 KPLDRELIARFHLRAHAVDI 83
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 84.3 bits (209), Expect = 2e-20
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSLVAGD 73
+ + ++D ND+ P F ++ E GT V V AID D P + Y +++
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 74 -----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASDGVQSADVVLT 118
F + + +G++ + LDRE+ +Y + ++A+D + L+
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Score = 77.4 bits (191), Expect = 5e-18
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGDEG 75
V + ++D N+ P FA E + GT++ + A DPD I Y+ ++
Sbjct: 325 VSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN 383
Query: 76 KFVLESSSGNLKLKDTLDREQ----KDKYRVQVRASDG---VQSADVVLTI 119
++ +G + LDRE + Y ASD S L I
Sbjct: 384 WLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQI 434
Score = 76.2 bits (188), Expect = 1e-17
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSLVAGD 73
+ + D ND+PP F + E+ V +VA + D D P T AY + GD
Sbjct: 209 AVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGGD 267
Query: 74 E-GKFVLESSS----GNLKLKDTLDREQKDKYRVQVRASDGV 110
G+F + + G + + +D E + + V A + V
Sbjct: 268 PTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQV 309
Score = 64.3 bits (157), Expect = 2e-13
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP---GTIAYSLV---A 71
+Q+ +LD ND+ P E E ++ + A+D D+ G A+ L
Sbjct: 432 LQIYLLDINDNAPQVL--PQEAETCETPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPV 487
Query: 72 GDEGKFVLESSSGNL-KLKDTLDREQKDKYRVQVRASDG---VQSADVVLTILNC 122
+ + + +G+ +L + + Y V + +D +S +L + C
Sbjct: 488 TIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVC 542
Score = 61.6 bits (150), Expect = 2e-12
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 40 TISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-----EGKFVLESSSGNLKLKDTL 92
+ E+ G ++ I D ++ YS+ G F++ SG L + L
Sbjct: 8 NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 93 DREQKDKYRVQVRASDG 109
DRE ++ ++ A D
Sbjct: 67 DRELIARFHLRAHAVDI 83
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 78.7 bits (195), Expect = 2e-20
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 21 RILDRNDSPPSFADFHTEY--TISEDVPVGTLVAKVKAIDPD--LPGTIAYSLVAGDE-- 74
ND+ P F + Y ++E+ GT + +++A D D + G I Y A E
Sbjct: 3 SGSSGNDNSPRFE--KSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV 60
Query: 75 -GKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
L+ +SG L + +DRE+ ++ R V A D
Sbjct: 61 RRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDR 96
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 80.5 bits (199), Expect = 4e-20
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAG 72
+ + + D+ND+ P F E +++E GT V KV A D D IAY++V+
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 73 DE-----GKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASDG 109
D F + +G + L LDRE Y + V+A+D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADL 196
Score = 62.7 bits (153), Expect = 2e-13
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 40 TISEDVPVGTLVAKVKAIDPDL--PGTIAYSLVAGD-----EGKFVLESSSGNLKLKDTL 92
+ E+ G + I + + YS+ G F++E +G LK+ L
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 93 DREQKDKYRVQVRASDG 109
DRE KY + A
Sbjct: 67 DREAIAKYILYSHAVSS 83
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 82.4 bits (204), Expect = 9e-20
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAG 72
+ + + D+ND+ P F E +++E GT V KV A D D IAY++V+
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 73 D-----EGKFVLESSSGNLK-LKDTLDREQKDKYRVQVRASDGVQ-----SADVVLTIL 120
D + F + +G + L LDRE Y + V+A+D +A V+T+
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Score = 78.5 bits (194), Expect = 2e-18
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGDEG 75
V + ++D N+ P F + ED VG + A +PD I Y +
Sbjct: 319 VTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN 377
Query: 76 KFVLESSSGNLKLKDTLDREQ-----KDKYRVQVRASDG---VQSADVVLTI 119
+ +G + + +DRE Y + A+D + + L +
Sbjct: 378 WLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLL 429
Score = 74.7 bits (184), Expect = 4e-17
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSLVAGD 73
+ + D ND+ P F + + E+ V +A +K D D P T Y++V
Sbjct: 207 AVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDP 265
Query: 74 EGKFVLESSS----GNLKLKDTLDREQKDKYRVQVRASDGV--------QSADVVLTILN 121
+ +FV+ + G LK LD E K +Y + VR + +A V + +++
Sbjct: 266 DQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVD 325
Score = 63.5 bits (155), Expect = 3e-13
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP---GTIAYSLVAGDE 74
+ L +LD ND+ P + P ++ +DPDLP L G
Sbjct: 427 LLLVLLDVNDNAPIPE--PRNMQFCQRNPQPHIIT---ILDPDLPPNTSPFTAELTHGAS 481
Query: 75 GKFVLE--SSSGNLKLKDTLDREQKDKYRVQVRASDG---VQSADVVLTILNC 122
+ +E ++ + + +Y++ ++ +D Q + + + +C
Sbjct: 482 VNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDC 534
Score = 62.0 bits (151), Expect = 1e-12
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDL--PGTIAYSLVAG-----DEGKFVLESSSGNLKLKDT 91
+ E+ G + I + + YS+ G F++E +G LK+
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 92 LDREQKDKYRVQVRASDG 109
LDRE KY + A
Sbjct: 66 LDREAIAKYILYSHAVSS 83
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 76.7 bits (190), Expect = 1e-19
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 21 RILDRNDSPPSFADFHTEY--TISEDVPVGTLVAKVKAIDPD--LPGTIAYSLVAGDEGK 76
ND+ P F + I E+ PVGT V ++ A D D I Y A
Sbjct: 3 SGSSGNDNRPVFK--EGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPA 60
Query: 77 ----FVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
F L +++G + ++ +LDRE+ ++V V ASDG
Sbjct: 61 TKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDG 97
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 81.2 bits (201), Expect = 2e-19
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAG 72
+ + ++D+ND+ P F ++ E V GT V V A D D G ++YS++
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Query: 73 D-----EGKFVLESSSGNLKLKDT-LDREQKDKYRVQVRASDGVQ-----SADVVLTIL 120
D F + +G + L T LDRE+ +Y + V+A+D ++ I
Sbjct: 160 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 218
Score = 77.0 bits (190), Expect = 6e-18
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGDEG 75
V + + D N+ P F + +SED+ G + + A DPD ++Y +
Sbjct: 325 VTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR 383
Query: 76 KFVLESSSGNLKLKDTLDRE----QKDKYRVQVRASDG---VQSADVVLTI 119
+ +G + LDRE + + Y V + +D V + L +
Sbjct: 384 WLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLIL 434
Score = 75.8 bits (187), Expect = 2e-17
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT---IAYSLVAGDE 74
++I D ND+ P F + E+ +G V ++ D D+PGT A + +E
Sbjct: 213 AIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNE 271
Query: 75 -GKFVLESS----SGNLKLKDTLDREQKDKYRVQVRASDGV--------QSADVVLTILN 121
G F + + G L LD E + +Y +Q+ + +A V +T+ +
Sbjct: 272 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 331
Score = 68.9 bits (169), Expect = 4e-15
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAG-----DEGKFVLE 80
+ + + + +E P + ++K+ + D + YS+ +G F +E
Sbjct: 2 HHHHHDWVIPPIKVSENERGPFPKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 81 SSSGNLKLKDTLDREQKDKYRVQVRASDG 109
+G + + LDRE+ DKY + A
Sbjct: 61 WETGWMLVTRPLDREEYDKYVLSSHAVSE 89
Score = 61.6 bits (150), Expect = 2e-12
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP---GTIAYSLVAG-D 73
+ L +LD ND+ P + +T+ + P + D D+P SL G D
Sbjct: 432 LILHVLDVNDNGPVPS--PRVFTMCDQNP---EPQVLTISDADIPPNTYPYKVSLSHGSD 486
Query: 74 EGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG---VQSADVVLTILNC 122
S G L + +K Y + V SD Q V T+ +C
Sbjct: 487 LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSC 538
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 80.7 bits (199), Expect = 3e-19
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAG 72
+ + ++D+ND+ P F ++ E V GT V V A D D G ++YS++
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Query: 73 D-----EGKFVLESSSGNLKLKDT-LDREQKDKYRVQVRASDGVQ-----SADVVLTIL 120
D F + +G + L T LDRE+ +Y + V+A+D ++ I
Sbjct: 309 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 367
Score = 78.0 bits (192), Expect = 3e-18
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGDEG 75
V + + D N+ P F + +SED+ G + + A DPD ++Y +
Sbjct: 474 VTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR 532
Query: 76 KFVLESSSGNLKLKDTLDRE----QKDKYRVQVRASDG---VQSADVVLTI 119
+ +G + LDRE + + Y V + +D V + L +
Sbjct: 533 WLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLIL 583
Score = 76.1 bits (187), Expect = 2e-17
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT---IAYSLVAGDE 74
++I D ND+ P F + E+ +G V ++ D D+PGT A + +E
Sbjct: 362 AIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNE 420
Query: 75 -GKFVLESSS----GNLKLKDTLDREQKDKYRVQVRASDGVQSADVVLT 118
G F + + G L LD E + +Y +Q+ + + + T
Sbjct: 421 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPT 469
Score = 68.0 bits (166), Expect = 9e-15
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTI-------SEDVPVGTLVAKVKAIDPDLPGTIAYSLV 70
+L +L ++ ++ I +E P + ++K+ + D + YS+
Sbjct: 136 SKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKS-NKDRFNKVYYSIT 194
Query: 71 AGD-----EGKFVLESSSGNLKLKDTLDREQKDKYRVQVRASDG 109
+G F +E +G + + LDRE+ DKY + A
Sbjct: 195 GQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSE 238
Score = 62.2 bits (151), Expect = 1e-12
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISED-VPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGK 76
V D + P F+ ++++ + G + KV D Y +
Sbjct: 23 VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSR--- 79
Query: 77 FVLESSSGNLKLKDTLDREQKDKYRVQVRASDGVQSADVVLTI 119
F + G + +K + + K+ + + G++ + +
Sbjct: 80 FRVL-PDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVA 121
Score = 59.1 bits (143), Expect = 1e-11
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP---GTIAYSLVAGDE 74
+ L +LD ND+ P + P + D D+P SL G +
Sbjct: 581 LILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSD 635
Query: 75 GK-FVLESSSGNLKLKDTLDREQKDKYRVQVRASDG---VQSADVVLTILNC 122
S G L + +K Y + V SD Q V T+ +C
Sbjct: 636 LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSC 687
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 75.5 bits (186), Expect = 3e-18
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 18 VQLRILDRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT----IAYSLVAGD 73
+++ ++D+ND+ P F + + E P GT V ++ A D D P T + Y++
Sbjct: 94 LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQT 153
Query: 74 -----EGKFVLESSSGNLKL---KDTLDREQKD--KYRVQVRASDG 109
F ++ G++ LDRE + KY + + A D
Sbjct: 154 PDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDM 199
Score = 65.5 bits (160), Expect = 2e-14
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 40 TISEDVPVGTLVAKVKAIDPD--LPGTIAYSLVAGD-EGKFVLESSSGNLKLKDTLDREQ 96
++ P V KV D + V D +G F + ++G++ + TLDRE
Sbjct: 11 PENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET 70
Query: 97 KDKYRVQVRASDG 109
Y++ V +D
Sbjct: 71 IATYQLYVETTDA 83
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 64.3 bits (157), Expect = 6e-15
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 39 YTISE--DVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-EGKFVLESSSGNLKLKDTLD 93
I E P V KV D + V D +G F + ++G++ + TLD
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 94 REQKDKYRVQVRASDG 109
RE Y++ V +D
Sbjct: 68 RETIATYQLYVETTDA 83
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 63.2 bits (154), Expect = 1e-14
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 42 SEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-EGKFVLESSSGNLKLKDTLDREQKD 98
++ +P +V +V D + V + +G F + +SG + + LDRE
Sbjct: 12 NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIP 71
Query: 99 KYRVQVRASDG 109
Y++QV +D
Sbjct: 72 SYQLQVETTDE 82
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 62.8 bits (153), Expect = 3e-14
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 30 PSFADFHTEYTISE--DVPVGTLVAKVKAIDPDLPGTIAYSLVAGD-----EGKFVLESS 82
P + + E P + ++K+ + D G + YS+ G F++E
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKS-NKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 83 SGNLKLKDTLDREQKDKYRVQVRASDG 109
+G LK+ + LDRE+ Y + A
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSS 87
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 62.0 bits (151), Expect = 8e-14
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 43 EDVPVGTLVAKVKA-IDPDLPGTIAYSLVAGD-----EGKFVLESSSGNLKLKDTLDREQ 96
ED+ +AK+ + + + I Y G FV +G L + LDRE+
Sbjct: 23 EDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE 82
Query: 97 KDKYRVQVRASDG 109
+ + A D
Sbjct: 83 TPFFLLTGYALDA 95
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 61.1 bits (149), Expect = 1e-13
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 41 ISEDVPVGTLVAKVKAIDPDL--PGTIAYSLVAG-----DEGKFVLESSSGNLKLKDTLD 93
+ E+ G ++ I ++ YS+ G F++ SG L + LD
Sbjct: 11 LPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 94 REQKDKYRVQVRASDG-----VQSADVVLTIL 120
RE ++ ++ A D D+V+ ++
Sbjct: 70 RELIARFHLRAHAVDINGNQVENPIDIVINVI 101
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 59.7 bits (145), Expect = 4e-13
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDLP-GTIAYSLVA-GDEGKFVLESSSGNLKLKDTLDREQ 96
+ + E L D D G+I Y L G F ++ ++G++ LDRE+
Sbjct: 9 FVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREE 68
Query: 97 KDKYRVQVRASD 108
+ +Y ++ +A D
Sbjct: 69 RSQYTLRAQALD 80
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 58.6 bits (142), Expect = 8e-13
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 39 YTIS----EDVPVGTLVAKVKAIDPD--LPGTIAYSLVAGD-EGKFVLESSSGNLKLKDT 91
I + P V KV + ++ V D +G F + SG++ +
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRP 64
Query: 92 LDREQKDKYRVQVRASDG 109
LDRE Y ++V +D
Sbjct: 65 LDREAIANYELEVEVTDL 82
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 54.7 bits (132), Expect = 3e-11
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDLP-GTIAYSLVA-GDEGKFVLESSSGNLKLKDTLDREQ 96
+ + E ++ D D I Y L G F + +G++ LDRE+
Sbjct: 8 FVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 97 KDKYRVQVRASD 108
K +Y + +A D
Sbjct: 68 KAEYTLTAQAVD 79
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 35.6 bits (83), Expect = 5e-04
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDL-PGTIA---YSLVAGDEGK-FVLESSSGNLKLKDTLD 93
Y+I E+ GT V ++ A D L + + + + D G + +G L + +D
Sbjct: 7 YSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRID 65
Query: 94 REQ 96
RE+
Sbjct: 66 REE 68
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Mus musculus}
Length = 125
Score = 35.3 bits (82), Expect = 0.001
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 39 YTISEDVPVGTLVAKVKAIDPDL-PGTIA---YSLVAGDEGK-FVLESSSGNLKLKDTLD 93
Y++ E+ G+LV + A D L + +++ + LE SGNL LK+ LD
Sbjct: 15 YSVLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLD 73
Query: 94 REQ 96
RE+
Sbjct: 74 REE 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.004
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 24/110 (21%)
Query: 4 LTLNLAHKFGVIGCVQLRILDRNDSP-------PSFADFHTEY------TISEDVPVGTL 50
L L L G Q RI P + FH+ I++D+ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 51 VAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNL--KLKDTLDREQKD 98
K D +P Y G + L SG++ ++ D + R
Sbjct: 449 SFNAK--DIQIP---VYDTFDGSD----LRVLSGSISERIVDCIIRLPVK 489
Score = 26.6 bits (58), Expect = 2.6
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 36/119 (30%)
Query: 31 SFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTI--------AY---SLVAGDEGKFVL 79
+F Y D + L AK + + T+ Y ++A
Sbjct: 87 CLTEFENCYLEGND--IHALAAK---LLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 80 ES------SSGNLKL----------KDTLD--REQKDKYRVQVRASDGVQSADVVLTIL 120
S GN +L D + R+ Y V V D ++ + L+ L
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG--DLIKFSAETLSEL 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.015
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 19/104 (18%)
Query: 20 LRILDRNDSPPSFADFHTEYTI-SEDV--PVGTLVAKVKAIDPDLPGTIA-----YSLVA 71
L +L+ + F ++ P L + + YSLV
Sbjct: 363 LNVLEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 72 GDEGKFVLESSSGNLKLKDTLDREQK------DKYRVQVRASDG 109
+ + S L+LK L+ E D Y + + D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDS 461
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 31.8 bits (71), Expect = 0.049
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 18/110 (16%)
Query: 28 SPPSFADFHTEYTISEDVPVGTLVAKVKAID--------PDLPG------TIAYSLVAGD 73
S ++ T D VG + ++ + P P ++Y +
Sbjct: 777 SVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDE 836
Query: 74 EGKFVLESSSGNLKLKDTLDREQKDKYRVQVRAS----DGVQSADVVLTI 119
E L+ L Y V++RA+ +G + +
Sbjct: 837 ELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYV 886
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel
beta-sheet, plant protein; 2.20A {Pachyrhizus erosus}
SCOP: d.129.3.1 PDB: 1txc_A*
Length = 157
Score = 31.1 bits (70), Expect = 0.054
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKLKDTLD 93
+ T +E ++ KV AID YS+V G LE S K+
Sbjct: 54 KITANEGDKTSFVLQKVDAIDEA-NLGYDYSIVGGTGLPESLEKLSFETKVVAGSG 108
>2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related
protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus
carota} PDB: 2wql_A* 2bk0_A
Length = 154
Score = 28.5 bits (63), Expect = 0.37
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKLKDTLD 93
T+ E P+ T+ + A++ + + +++ GD +ES ++ + T D
Sbjct: 55 IITLPEGSPITTMTVRTDAVNKE-ALSYDSTVIDGDILLGFIESIETHMVVVPTAD 109
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula
pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A*
4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A
1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Length = 159
Score = 28.0 bits (62), Expect = 0.53
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKLKDTLD 93
+ + E P + +V +D +YS++ G LE S +K+ T +
Sbjct: 55 KISFPEGFPFKYVKDRVDEVDHTN-FKYSYSVIEGGPVGDTLEKISNEIKIVATPN 109
>3op6_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 2.00A {Legionella pneumophila
subsp}
Length = 152
Score = 26.5 bits (59), Expect = 1.8
Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 32 FADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKL 88
+Y P T + +A +++ +G+ + + +
Sbjct: 11 LDSHKIKYLSIAHSPAYTAQEIAASAHVS-GKQLAKTVIIKMDGRLAMVVLPASDHI 66
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related
proteins, multiple- ligand binding, plant protein; HET:
ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Length = 155
Score = 26.4 bits (58), Expect = 2.4
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 38 EYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKLKDTLD 93
+ +V ++ D I ++ G L KL + +
Sbjct: 55 IFNFLPEVSPSYQREEITEFDES-SHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEE 109
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 25.8 bits (56), Expect = 2.6
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 81 SSSGNLKLKDTLDREQKDKYRVQVRASDGVQSAD 114
++G+LK+K+ L R+ Y V V +++G + D
Sbjct: 56 LANGDLKIKN-LTRDDSGTYNVTVYSTNGTRILD 88
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 25.9 bits (57), Expect = 3.0
Identities = 18/114 (15%), Positives = 28/114 (24%), Gaps = 28/114 (24%)
Query: 27 DSPPSF-ADFHTEYTISEDVPVGTLVAKVKAID----------PDLPG------TIAYSL 69
S S T EDVP I P I++
Sbjct: 2 SSGSSGPQLVRTH----EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEE 57
Query: 70 VAGDEGKFVLESSSGNLKLK-DTLDREQKDKYRVQVRAS----DGVQSADVVLT 118
+ + L+ + L Y ++V A G SA + +
Sbjct: 58 YNRTNTRVTHYLPNVTLEYRVTGLTALTT--YTIEVAAMTSKGQGQVSASTISS 109
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A*
3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Length = 418
Score = 25.2 bits (55), Expect = 8.1
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 13 GVIGCVQLRILDRNDSPPSFADFHT 37
GVIG R D + P FHT
Sbjct: 77 GVIG----RYSDLGEQIPEVEHFHT 97
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response,
innate immunity, secreted, sugar binding protein; NMR
{Plodia interpunctella}
Length = 130
Score = 24.5 bits (53), Expect = 9.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 62 PGTIAYSLVAGDEGKFVLESSSGNLKLKDTL 92
G A + EG++ + LKL D +
Sbjct: 54 AGHWARDITKPKEGRWTFRDRNAKLKLGDKI 84
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor,
sugar bindi protein; 1.58A {Plodia interpunctella} PDB:
3aqz_A* 3aqx_A* 2rqe_A
Length = 106
Score = 24.0 bits (52), Expect = 9.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 62 PGTIAYSLVAGDEGKFVLESSSGNLKLKDTL 92
G A + EG++ + LKL D +
Sbjct: 45 AGHWARDITKPKEGRWTFRDRNVKLKLGDKI 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,820,554
Number of extensions: 101920
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 87
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)