RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6837
(122 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 51.9 bits (123), Expect = 2e-10
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 27 DSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGDEGKFVLESSSG 84
+ P F + +SED+ G + + A DPD ++Y + + +G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 85 NLKLKDTLDRE----QKDKYRVQVRASDG---VQSADVVLTI 119
+ LDRE + + Y V + +D V + L +
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLIL 102
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 49.7 bits (117), Expect = 2e-09
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPD-----LPGTIAYSLVAGDEGKFVLE 80
ND+ P F ++ E V GT V V A D D L G ++YS++ D + +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 81 SSSGN------LKLKDTLDREQKDKYRVQVRASDG---VQSADVVLTI 119
+ N + LDRE+ +Y + V+A+D S + I
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 109
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 46.7 bits (110), Expect = 1e-08
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 40 TISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-----EGKFVLESSSGNLKLKDTL 92
+SE+ G ++ I + + YS+ +G F +E +G + + L
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 93 DREQKDKYRVQVRASDG---VQSADVVLTI 119
DRE+ DKY + A + +TI
Sbjct: 67 DREEYDKYVLSSHAVSENGSPVEEPMEITI 96
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 46.3 bits (109), Expect = 2e-08
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 40 TISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-----EGKFVLESSSGNLKLKDTL 92
+ E+ G + I + G + YS+ G F++E +G LK+ + L
Sbjct: 11 SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69
Query: 93 DREQKDKYRVQVRASDG---VQSADVVLTI 119
DRE+ Y + A + + I
Sbjct: 70 DRERIATYTLFSHAVSSNGNAVEDPMEILI 99
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 45.4 bits (106), Expect = 8e-08
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEG--------KF 77
ND+ P F + E+ +G V ++ D D+PGT A+ V
Sbjct: 2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 78 VLESSSGNLKLKDTLDREQKDKYRVQVRASDGVQ--------SADVVLTILN 121
ES+ G L LD E + +Y +Q+ + +A V +T+ +
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 45.1 bits (105), Expect = 9e-08
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGT---------IAYSLVAGDEGK 76
ND+ P F ++ E GT V V AID D P ++ +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 77 FVLESSSGNLKLKDTL-DREQKDKYRVQVRASDG------VQSADVVLTI 119
F + + +G++ DRE+ +Y + ++A+D S I
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVI 110
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 44.3 bits (103), Expect = 1e-07
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLP-----GTIAYSLVAGDEG----- 75
ND+ P F E +++E GT V KV A D D IAY++V+ D
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 76 KFVLESSSGNLKLKDTL-DREQKDKYRVQVRASDG---VQSADVVLTI 119
F + +G + + + DRE Y + V+A+D S I
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVI 108
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 43.7 bits (102), Expect = 3e-07
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 40 TISEDVPVGTLVAKVKAIDPDLP--GTIAYSLVAGD-----EGKFVLESSSGNLKLKDTL 92
+ E+ G ++ I ++ YS+ G F++ SG L + L
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 93 DREQKDKYRVQVRASDG---VQSADVVLTI 119
DRE ++ ++ A D + + I
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVI 98
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 38.8 bits (89), Expect = 3e-05
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 24 DRNDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTIAYSLVAGDEGKFVLESSS 83
+ F + + +DV G + VK + + + Y + K
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVD---ED 61
Query: 84 GNLKLKDTLDREQKDKYRVQVRASDG 109
G + + ++ + + A D
Sbjct: 62 GTVYAVRSFPLTA-EQAKFLIYAQDK 86
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 35.4 bits (80), Expect = 3e-04
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 26 NDSPPSFADFHTEYTISEDVPVGTLVAKVKAIDPDLPGTI----AYSLVAGDEGKFVLES 81
ND+ P + +T+ + P + + D D+P D
Sbjct: 1 NDNGPVPS--PRVFTMCDQNPEPQV---LTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 82 SSGNLKLKDTLDREQKDKYRVQVRASDGV---QSADVVLTILNC 122
S G L + +K Y + V SD Q V T+ +C
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSC 99
>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 26.4 bits (58), Expect = 0.60
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 81 SSSGNLKLKDTLDREQKDKYRVQVRASDGVQSAD--VVLTIL 120
+G LK+K L + +D Y+V + + G + L I
Sbjct: 60 FKNGTLKIKH-LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ 100
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase
subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 166
Score = 23.6 bits (51), Expect = 6.7
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 13 GVIGCVQLRILDRNDSPPSFADFHT 37
GVIG R D + P FHT
Sbjct: 76 GVIG----RYSDLGEQIPEVEHFHT 96
>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
BC3120 {Bacillus cereus [TaxId: 1396]}
Length = 403
Score = 23.8 bits (51), Expect = 7.9
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 52 AKVKAIDPDLPGTIAYSLVAGDEGKFVLESSSGNLKLKDTLDREQ 96
+ D P + Y + +F ++ N K L+ +
Sbjct: 319 GPYGTLKSDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQH 363
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 423,129
Number of extensions: 17853
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)