BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6838
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 184/417 (44%), Gaps = 88/417 (21%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN TY
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN---TY------------ 142
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDR 115
N + Y+IVS D E +FT+N G +S L LDR
Sbjct: 143 ---------------------NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNT 174
E+ +Y LVV A D+ + LS+T + I ++D+NDNAP F + + +PEN +N
Sbjct: 182 ESYPTYTLVVQAADLQG---EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNA 237
Query: 175 VVAALKAIDRDEGQNSYVE--YSIINSEATPFSL--GPV--DGLLRVAQKLDREIKSNYT 228
+A LK D D + Y+++N F + P DG+L+ A+ LD E K Y
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYI 297
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L ++ ++ EP + S VP ATV +
Sbjct: 298 LHVRVENE-EPFEGSL-------------------------VPST----ATVTVDVVDVN 327
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
+P+F +V ED G + + D ++ +TY + D AN INP++G
Sbjct: 328 EAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN-WLEINPETG 386
Query: 349 IFTLTAKLDYEDVHH-----YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP 400
A++D ED H Y+ ++ A D G P+ + T T+ ++D+NDN P+ +P
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEP 443
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 41/229 (17%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLP 431
V D+NDN P+F+P V EN + +A++ D D+ P
Sbjct: 206 KAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTP 253
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 150/344 (43%), Gaps = 45/344 (13%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSY 266
G++ V LDRE YTL ++A D S+ K I + D NDN P+F+ +Y
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 267 SASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG 326
VPEN V A + + T+D++P + P V V D D+
Sbjct: 227 QGQVPEN-EVNARIATLKVTDDDAP-------------NTPAWKAVYTVV-NDPDQ---- 267
Query: 327 VVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK---PMMSSTVT 383
+ VV+D + GI LD+E YI V+ ++ ++ ST T
Sbjct: 268 --QFVVVTDPTTN-------DGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTAT 318
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDS 427
V +VVD+N+ P+F P + V E+ +G + S A + D+
Sbjct: 319 VTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDT 361
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 136/300 (45%), Gaps = 50/300 (16%)
Query: 84 RLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTT 142
+++Y I+SGD IF IN G + +K LDRE K+ Y L A D K L +
Sbjct: 34 KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET--NKPLEPPS 90
Query: 143 QVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIIN 198
+ I ++D+NDNAPEF+ T+PE S L T V + A D D+ G ++ + YSI+
Sbjct: 91 EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL- 149
Query: 199 SEATP-FSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSK--SSRTKFFIRLLDE 254
E P FS+ P +++ A +DRE K Y + I+AKD G S S T + L D
Sbjct: 150 -EGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV 208
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ 314
NDN P F Y SVPE++ + G+ +G+
Sbjct: 209 NDNPPKFAQSLYHFSVPEDVVL--------------------------------GTAIGR 236
Query: 315 VFTTDADEGVNGVVTYSVVSDWANDVFSI----NPQSGIFTLTAKLDYEDVHHYIFVVQA 370
V D D G N +Y ++ +F I Q G+ L LD+E Y V+A
Sbjct: 237 VKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 118/255 (46%), Gaps = 47/255 (18%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+P F Y V E G+ V V TDAD+ V G
Sbjct: 96 VQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYG---------------- 139
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSN-LKHLDRETKS 119
++ +L YSI+ G + F+I P + L ++DRE K
Sbjct: 140 --------------------NSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAKE 177
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAA 178
Y +V+ A DM LS TT +++ + DVNDN P+F + ++PE+ L T +
Sbjct: 178 EYLVVIQAKDMGG-HSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGR 236
Query: 179 LKAIDRDEGQNSYVEYSIINSEATPF-----SLGPVDGLLRVAQKLDREIKSNYTLEIKA 233
+KA D+D G+N+ Y II+ + T DG++R+ + LD E K +YTL+++A
Sbjct: 237 VKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
Query: 234 KD-RGEPSKSSRTKF 247
+ +P SSR F
Sbjct: 297 ANIHIDPRFSSRGPF 311
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 39/235 (16%)
Query: 201 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPI 260
T F + + G + ++LDRE K+ YTL +A +D N P+
Sbjct: 45 GTIFQINDITGDIHAIKRLDREEKAEYTLTAQA------------------VDFETNKPL 86
Query: 261 FDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA 320
+ +++V D NDN+P F Y V E G+ V V TDA
Sbjct: 87 EPPSEF-------------IIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDA 133
Query: 321 DEGVNG---VVTYSVVSDWANDVFSINPQSGIF-TLTAKLDYEDVHHYIFVVQAQDTGKP 376
D+ V G + YS++ FSI P++ I T +D E Y+ V+QA+D G
Sbjct: 134 DDPVYGNSAKLVYSILE--GQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGH 191
Query: 377 M--MSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGK 429
+S T T+ + D+NDNPP F + V E+V LGT + V A D D G+
Sbjct: 192 SGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGE 246
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 169/372 (45%), Gaps = 55/372 (14%)
Query: 78 DVSDNGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP 133
D N L YS+ G D+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING- 85
Query: 134 PQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNS 190
++ + + I + D+NDN PEF+ ++PE S T V + AID D+ N
Sbjct: 86 --NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG 143
Query: 191 YVEYSIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPSK-- 241
+ Y I++ + +TP F++ G ++ VA LDRE YTL I+A D G P+
Sbjct: 144 MLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGL 203
Query: 242 SSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFD 301
S+ I + D NDN P F + ++ VPEN V V ++ T+ + P A+
Sbjct: 204 SNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYR 262
Query: 302 VLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV 361
+ P G +++++D N G+ T+ +D+E
Sbjct: 263 ISGGDPTGR-------------------FAILTD-------PNSNDGLVTVVKPIDFETN 296
Query: 362 HHYIFVVQAQDTGKPMM-------SSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLG 414
++ V A++ P+ ST TV V+D+N+N P F P P I E + G
Sbjct: 297 RMFVLTVAAENQ-VPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAG 354
Query: 415 TGLASVHAVDLD 426
T L ++ A D D
Sbjct: 355 TMLTTLTAQDPD 366
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 153/358 (42%), Gaps = 52/358 (14%)
Query: 63 PQSGIFTLTAKLDYEDVSD-NGRLEYSIVSG----DDEEIFTINPSNGTLSNLKH-LDRE 116
P + + T+TA +D +D + NG L Y I+S +FTIN G + + LDRE
Sbjct: 123 PGTYVMTVTA-IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE 181
Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
Y L++ ATDM P LS+T I + DVNDN PEF +PEN ++ +
Sbjct: 182 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVI 240
Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPV-------DGLLRVAQKLDREIKSNYT 228
VA L D+D+ + S P + DGL+ V + +D E +
Sbjct: 241 VANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFV 300
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L + A+ N + +K +V TV+ D N+
Sbjct: 301 LTVAAE-----------------------NQVPLAKGIQHPPQSTATVSVTVI---DVNE 334
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
N P F+ E L G+ + + D D + + Y+ +SD AN I+P +G
Sbjct: 335 N-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN-WLKIDPVNG 392
Query: 349 IFTLTAKLDYE------DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP 400
T A LD E ++++ F+ A D G P MS T T+ ++D+NDN P P
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFL--ASDNGIPPMSGTGTLQIYLLDINDNAPQVLP 448
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 44/249 (17%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
+PENS L I D +N + YS+ A F + P+ G L V + LD
Sbjct: 9 LPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
RE+ + + L A D + I ++D NDN P F + ++ SVPE G V
Sbjct: 68 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN-- 338
+ V+ + + P +NG++ Y ++S +
Sbjct: 128 MTVTAIDADDP------------------------------NALNGMLRYRILSQAPSTP 157
Query: 339 --DVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDT-GKPM--MSSTVTVYFNVVDLN 392
++F+IN ++G I T+ A LD E V Y ++QA D G P +S+T T V D+N
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVN 217
Query: 393 DNPPLFDPM 401
DNPP F M
Sbjct: 218 DNPPEFTAM 226
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 129/471 (27%), Positives = 187/471 (39%), Gaps = 109/471 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P F++ V+ V E + G++V V TD D+ ++ +
Sbjct: 253 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSL--------------- 297
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE----IFTINPSNGTLSNL-KHLDR 115
NG L YSI+ D EE +FTIN G +S + LDR
Sbjct: 298 ---------------------NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNT 174
E Y L V ATD+ LS + I I D NDNAP F T +PEN +
Sbjct: 337 EKFPEYTLTVQATDLEG---AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGF 392
Query: 175 VVAALKAIDRD-EGQNSYVE-YSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYT 228
V L D D G ++ Y I +E F++ G+L A+ LD E++ Y
Sbjct: 393 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 452
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L+I ++ EP SVP S + V D N+
Sbjct: 453 LQITVEN-AEP----------------------------FSVPLPTSTATVTVTVEDVNE 483
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
+P F V DV EDL RG ++ + D D+ ++Y + +D A ++N +G
Sbjct: 484 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 541
Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP---- 400
I T LD E + Y ++ D G + + T T+ +V+D+NDN P+ P
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 401 -----------------MPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLL 434
+PPN Y+ V+L G +LDS LL
Sbjct: 602 MCDQNPEPQVLTISDADIPPNTYPYK-VSLSHGSDLTWKAELDSKGTSMLL 651
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 153/352 (43%), Gaps = 49/352 (13%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G + + LDRE Y L A P + +++I + D NDN P
Sbjct: 205 VFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQNDNRP 261
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIINS---EATP--FSLG 207
+F ++ E T V A+ A D D+ N + YSI+ E P F++
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 321
Query: 208 PVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSY 266
G++ + LDRE YTL ++A D S K I++ D NDN PIFD K+Y
Sbjct: 322 RETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY 381
Query: 267 SASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG 326
+A VPEN +G V ++S T+ D+P V+ +EG
Sbjct: 382 TALVPEN-EIGFEVQRLSVTD----------------LDMPGTPAWQAVYKIRVNEG--- 421
Query: 327 VVTYSVVSDWANDVFSINPQS--GIFTLTAKLDYEDVHHYIF---VVQAQDTGKPMMSST 381
+++ +D P+S GI T LD+E Y+ V A+ P+ +ST
Sbjct: 422 -GFFNITTD---------PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTST 471
Query: 382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFL 433
TV V D+N+ P F P + V E+++ G + S+ A D D ++ L
Sbjct: 472 ATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL 522
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQA-QDTGKPMMSSTV 382
V YS+ A++ VF I ++G +T LD E+ Y+ A + G P+ +
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV-EEPM 247
Query: 383 TVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ NV+D NDN P F V E V GT + +V A D D
Sbjct: 248 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 291
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 129/471 (27%), Positives = 187/471 (39%), Gaps = 109/471 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P F++ V+ V E + G++V V TD D+ ++ +
Sbjct: 104 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSL--------------- 148
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE----IFTINPSNGTLSNL-KHLDR 115
NG L YSI+ D EE +FTIN G +S + LDR
Sbjct: 149 ---------------------NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNT 174
E Y L V ATD+ LS + I I D NDNAP F T +PEN +
Sbjct: 188 EKFPEYTLTVQATDLEG---AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGF 243
Query: 175 VVAALKAIDRD-EGQNSYVE-YSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYT 228
V L D D G ++ Y I +E F++ G+L A+ LD E++ Y
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L+I ++ EP SVP S + V D N+
Sbjct: 304 LQITVEN-AEP----------------------------FSVPLPTSTATVTVTVEDVNE 334
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
+P F V DV EDL RG ++ + D D+ ++Y + +D A ++N +G
Sbjct: 335 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 392
Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP---- 400
I T LD E + Y ++ D G + + T T+ +V+D+NDN P+ P
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 452
Query: 401 -----------------MPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLL 434
+PPN Y+ V+L G +LDS LL
Sbjct: 453 MCDQNPEPQVLTISDADIPPNTYPYK-VSLSHGSDLTWKAELDSKGTSMLL 502
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 161/369 (43%), Gaps = 53/369 (14%)
Query: 84 RLEYSIV-SGDD---EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 139
++ YSI G D + +F I G + + LDRE Y L A P +
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VE 95
Query: 140 STTQVSIVIRDVNDNAPEFIT-ANETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYS 195
+++I + D NDN P+F ++ E T V A+ A D D+ N + YS
Sbjct: 96 EPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYS 155
Query: 196 IINS---EATP--FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFI 249
I+ E P F++ G++ + LDRE YTL ++A D S K I
Sbjct: 156 ILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 215
Query: 250 RLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRG 309
++ D NDN PIFD K+Y+A VPEN +G V ++S T+ D+P
Sbjct: 216 QITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTD----------------LDMPGT 258
Query: 310 SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS--GIFTLTAKLDYEDVHHYIF- 366
V+ +EG +++ +D P+S GI T LD+E Y+
Sbjct: 259 PAWQAVYKIRVNEG----GFFNITTD---------PESNQGILTTAKGLDFELRKQYVLQ 305
Query: 367 --VVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVD 424
V A+ P+ +ST TV V D+N+ P F P + V E+++ G + S+ A D
Sbjct: 306 ITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364
Query: 425 LDSGKLPFL 433
D ++ L
Sbjct: 365 PDKQQIQKL 373
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 57/367 (15%)
Query: 83 GRLEYSIVSGDDEEIFTI---NP-----SNGTLSNLKHLDRET---KSSYNLVVMATDMA 131
G+ + + D+E F I NP +NG + K D E + + + V+ T+M
Sbjct: 25 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84
Query: 132 KPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQ 188
+ + +V I+++DVND P FI + + N+P NT V L+A D D
Sbjct: 85 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144
Query: 189 NSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKF 247
N + Y I+ F + G++R ++ Y L +KA+D+
Sbjct: 145 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ----------- 191
Query: 248 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLP 307
N D + + ++ E +S+ +P F P Y ++ E+
Sbjct: 192 ----------NGKVDDRRFQSTPEERLSIVG--------GKRAPQFYMPSYEAEIPENQK 233
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSD-WANDVFSINPQSGIFTLTAKLDYEDV---HH 363
+ S + + A + + Y++ + F+I P SGI L +LD+ED+ H
Sbjct: 234 KDS---DIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHV 290
Query: 364 YIFVVQA-QDTGKPMMSSTVTVYFNVVDLNDNPPLFD-PMPPNIPVYENVTLGTGLASVH 421
Y +V A +D+G S++V + V D+NDN P F+ P V E++ LGT + V
Sbjct: 291 YSLIVTATEDSGG--FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVK 348
Query: 422 AVDLDSG 428
A+D DSG
Sbjct: 349 AMDSDSG 355
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 69/338 (20%)
Query: 63 PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTL----SNLKHLDRETK 118
P + +FTL A+ D + + Y IV F ++ +G + ++L LD E
Sbjct: 128 PNTPVFTLQAR----DPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME-- 181
Query: 119 SSYNLVVMATDM-AKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVV 176
Y L V A D K +R ST + + I AP+F + + E IPEN ++ +
Sbjct: 182 --YVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 238
Query: 177 AALKA---IDRDEGQNSYVEYSII--NSEATPFSLGPVDGLLRVAQKLDREIKSN---YT 228
++KA DR+ + Y++ A F++GP G++++A++LD E Y+
Sbjct: 239 ISIKAKSFADRE------IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYS 292
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L + A + DS +S SV ++V+D ND
Sbjct: 293 LIVTATE--------------------------DSGGFSTSVD-------LTIRVTDVND 319
Query: 289 NSPVFSEPVY-AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS 347
N+P F P Y A +V ED+P G+ + +V D+D G N + Y V ++D F+++ +
Sbjct: 320 NAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV----SDDHFAVD-SN 374
Query: 348 GIFTLTAKLDYEDVH-HYIFVVQAQDTGKPMMSSTVTV 384
GI +LD ++ + +Y F+V A+D G+P S TV
Sbjct: 375 GIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATV 412
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 51/240 (21%)
Query: 8 SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD-WANDVFSINPQSG 66
+P F P Y ++ E+ + S + + A + + Y++ + F+I P SG
Sbjct: 216 APQFYMPSYEAEIPENQKKDS---DIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSG 272
Query: 67 IFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVM 126
I L +LD+ED+ H+ Y+L+V
Sbjct: 273 IVKLAKELDFEDLRQ-----------------------------PHV-------YSLIVT 296
Query: 127 ATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN--ETTIPENSPLNTVVAALKAIDR 184
AT+ + S++ ++I + DVNDNAP+F + + E+ PL T + +KA+D
Sbjct: 297 ATEDSGG----FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDS 352
Query: 185 DEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE-IKSNYTLEIKAKDRGEPSKSS 243
D G N+ +EY + + F++ +G++ ++LD + + Y + AKD+GEP KS
Sbjct: 353 DSGSNAEIEYLVSDDH---FAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSG 408
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 1 VSDTNDNSPVFSEPVY-AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVF 59
V+D NDN+P F P Y A +V ED+P G+ + +V D+D G N + Y V ++D F
Sbjct: 314 VTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV----SDDHF 369
Query: 60 SINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE 96
+++ +GI +LD ++ +N E+ + + D E
Sbjct: 370 AVD-SNGIIVNNKQLDADN--NNAYYEFIVTAKDKGE 403
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 16/214 (7%)
Query: 52 SDWA-NDVFSINPQSGIF-TLTAKLDYEDVSDNGRLEYSIVSGDDE-EIFTINPSNGTLS 108
S W N F I +G L +L + S +G ++Y I+SG+ IF I+ +G +
Sbjct: 1 SGWVWNQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKY-ILSGEGAGTIFVIDDKSGNIH 59
Query: 109 NLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIP 167
K LDRE ++ Y L+ A D + + L ++ + ++D+NDN PEF+ +P
Sbjct: 60 ATKTLDREERAQYTLMAQAVD--RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVP 117
Query: 168 ENSPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATP-FSLGPVDGLLRVA-QKLDRE 222
E S + T V + A D D+ G ++ + YSI+ E P FS+ G++R A +DRE
Sbjct: 118 ERSNVGTSVIQVTASDADDPTYGNSAKLVYSIL--EGQPYFSVEAQTGIIRTALPNMDRE 175
Query: 223 IKSNYTLEIKAKDRGEP--SKSSRTKFFIRLLDE 254
K Y + I+AKD G S TK I L D+
Sbjct: 176 AKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 49/219 (22%)
Query: 182 IDRDEGQNSYVEYSIINSEA--TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-- 237
ID +G Y I++ E T F + G + + LDRE ++ YTL +A DR
Sbjct: 29 IDSGDGNIKY----ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 238 ---EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
EP ++F +++ D NDN P F + Y A+VPE +VG +V+QV+ ++ + P +
Sbjct: 85 RPLEPP----SEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTY- 139
Query: 295 EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF-TLT 353
G + + YS++ FS+ Q+GI T
Sbjct: 140 ----------------------------GNSAKLVYSILE--GQPYFSVEAQTGIIRTAL 169
Query: 354 AKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVVD 390
+D E Y V+QA+D G M +S T V + D
Sbjct: 170 PNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQA- 370
VG++ + D D G +G + Y + + A +F I+ +SG T LD E+ Y + QA
Sbjct: 22 VGRLHS-DIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV 79
Query: 371 -QDTGKPMMSSTVTVYFNVVDLNDNPP--LFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+DT +P+ + + V D+NDNPP L + N+P NV GT + V A D D
Sbjct: 80 DRDTNRPLEPPSEFI-VKVQDINDNPPEFLHEIYHANVPERSNV--GTSVIQVTASDAD 135
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 40/151 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P F +Y +V E G+ V QV +DAD+ G
Sbjct: 97 VQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYG---------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTL-SNLKHLDRETKS 119
++ +L YSI+ G + F++ G + + L ++DRE K
Sbjct: 141 --------------------NSAKLVYSILEG--QPYFSVEAQTGIIRTALPNMDREAKE 178
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
Y++V+ A DM LS TT+V+I + D
Sbjct: 179 EYHVVIQAKDMGG-HMGGLSGTTKVTITLTD 208
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 40/198 (20%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 120 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 147
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 148 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 207
Query: 383 TVYFNVVDLNDNPPLFDP 400
V D+NDN P+F+P
Sbjct: 208 KAVITVKDINDNAPVFNP 225
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 44/163 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN TY
Sbjct: 100 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN---TY------------ 144
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDR 115
N + Y+IVS D E +FT+N G +S L LDR
Sbjct: 145 ---------------------NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 183
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF 158
E+ +Y LVV A D+ + LS+T + I ++D+NDNAP F
Sbjct: 184 ESYPTYTLVVQAADLQG---EGLSTTAKAVITVKDINDNAPVF 223
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 13/176 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFD 262
G++ V LDRE YTL ++A D S+ K I + D NDN P+F+
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN 224
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 105/232 (45%), Gaps = 46/232 (19%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 19 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 225 SNYTLEIKAKD-RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
S +T+E D +G ++ K I++ D NDN P F ++ YS +PEN VG
Sbjct: 76 SEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG------ 125
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSI 343
+P+F V TD D G G V YS + F+I
Sbjct: 126 ------TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAI 157
Query: 344 NPQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPMMSSTVTVYFNVVDLND 393
+ GI T+ +LDYE Y V A QD +P +S+ + + D+ D
Sbjct: 158 DSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP-LSTLANLAIIITDMQD 208
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 140
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 38 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 91
Query: 141 TTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 199
T +V+I + DVNDNAP F IPEN+P+ T + + A D D G V YS
Sbjct: 92 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 150
Query: 200 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 236
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 151 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 187
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
ED P GS V Q+ D D N + + V + A+ F++ P +G+ L LD E
Sbjct: 21 EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 77
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
+ D + T V V D+NDN P F P ++ + EN +GT + V+A
Sbjct: 78 FTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 134
Query: 424 DLDSG 428
D D G
Sbjct: 135 DPDLG 139
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 43/153 (28%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+P F Y+ + E+ P G+ + V TD D G G V YS
Sbjct: 99 VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS----------- 147
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
P S F I+ + G ++ ++ LD E +
Sbjct: 148 FQPPS------------------------------PFFAIDSARGIVTVIQELDYEVTQA 177
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVND 153
Y L V ATD K + LS+ ++I+I D+ D
Sbjct: 178 YQLTVNATDQDK--TRPLSTLANLAIIITDMQD 208
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTY--SVVSDWANDVFSIN 344
NDNSP F + VY D+ E+ G+ + Q+ D D GVNG + Y ++ + ++
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396
SG ++ ++D E+V+ F V A+D G+P + TV N+ D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 152 NDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEY---SIINSEATPFSLG 207
NDN+P F + E + ENS T + L+A D D G N +EY + S L
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 208 PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
G L V ++DRE + + A+DRG+P K+ + + + DENDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 40/152 (26%)
Query: 5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
NDNSP F + VY D+ E+ G+ + Q+ D D GVNG + Y VF
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEY---------VF----- 53
Query: 65 SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLV 124
G T + + + ++ ++G LS L +DRE +
Sbjct: 54 -GAATESVR----------------------RLLRLDETSGWLSVLHRIDREEVNQLRFT 90
Query: 125 VMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
VMA D +PP+ + V + I+D NDN P
Sbjct: 91 VMARDRGQPPK---TDKATVVLNIKDENDNVP 119
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 54 W-ANDVFSINPQSGI-FTLTAKLDYEDVSDNGRLEYSIVSGDDE-EIFTINPSNGTLSNL 110
W AN F + +G + KL + +G L+Y I+SGD ++F IN + G +
Sbjct: 2 WMANQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKY-ILSGDGAGDLFIINENTGDIQAT 60
Query: 111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET-TIPEN 169
K LDRE K Y L A + + + + ++ I I D+NDN P F T T+PE
Sbjct: 61 KRLDREEKPVYILRAQAVN--RRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEM 118
Query: 170 SPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKS 225
+ + T V + A D D+ G ++ V YSI+ + FS+ G+++ A +DRE +
Sbjct: 119 ADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY-FSVESETGIIKTALLNMDRENRE 177
Query: 226 NYTLEIKAKDRG 237
Y + I+AKD G
Sbjct: 178 QYQVVIQAKDMG 189
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 37/185 (20%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDR--GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
G ++ ++LDRE K Y L +A +R G P + ++F I++ D NDN PIF Y+A
Sbjct: 55 GDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPE-SEFIIKIHDINDNEPIFTKDVYTA 113
Query: 269 SVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV 328
+VPE VG V+QV+ T+ + P + G + V
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTY-----------------------------GNSAKV 144
Query: 329 TYSVVSDWANDVFSINPQSGIF-TLTAKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVY 385
YS++ FS+ ++GI T +D E+ Y V+QA+D G M +S T TV
Sbjct: 145 VYSILQ--GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVN 202
Query: 386 FNVVD 390
+ D
Sbjct: 203 ITLTD 207
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQA- 370
VG++ + D D G +G + Y + D A D+F IN +G T +LD E+ YI QA
Sbjct: 21 VGKLHS-DQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAV 78
Query: 371 -QDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ TG+P+ + + + D+NDN P+F V E +GT + V A D D
Sbjct: 79 NRRTGRPVEPESEFI-IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDAD 134
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 40/151 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
+ D NDN P+F++ VY V E G+ V QV TDAD+ G
Sbjct: 96 IHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYG---------------- 139
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSN-LKHLDRETKS 119
++ ++ YSI+ G + F++ G + L ++DRE +
Sbjct: 140 --------------------NSAKVVYSILQG--QPYFSVESETGIIKTALLNMDRENRE 177
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
Y +V+ A DM LS TT V+I + D
Sbjct: 178 QYQVVIQAKDMGG-QMGGLSGTTTVNITLTD 207
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 44/238 (18%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
+PENS L I D +N + YS+ A F + P+ G L V + LD
Sbjct: 9 LPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
RE+ + + L A D + I ++D NDN P F + ++ SVPE G V
Sbjct: 68 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN-- 338
+ V+ + + P +NG++ Y +VS +
Sbjct: 128 MTVTAIDADDP------------------------------NALNGMLRYRIVSQAPSTP 157
Query: 339 --DVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDT-GKPM--MSSTVTVYFNVVD 390
++F+IN ++G I T+ A LD E V Y ++QA D G P +S+T T V D
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 78 DVSDNGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP 133
D N L YS+ G D+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING- 85
Query: 134 PQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNS 190
++ + + I + D+NDN PEF+ ++PE S T V + AID D+ N
Sbjct: 86 --NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG 143
Query: 191 YVEYSIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPS 240
+ Y I++ + +TP F++ G ++ VA LDRE YTL I+A D G P+
Sbjct: 144 MLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHH 363
RG ++ +D N + YSV A+ +F INP SG ++T LD E +
Sbjct: 14 RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
+ A D + + + + NV+D+NDN P F N V E GT + +V A+
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 424 DLD 426
D D
Sbjct: 134 DAD 136
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 46/157 (29%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVSDWAN-- 56
V D NDN P F V+ V E G+ V V DAD+ +NG++ Y +VS +
Sbjct: 98 VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTP 157
Query: 57 --DVFSINPQSG-IFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHL 113
++F+IN ++G I T+ A L
Sbjct: 158 SPNMFTINNETGDIITVAAGL--------------------------------------- 178
Query: 114 DRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
DRE Y L++ ATDM P LS+T I + D
Sbjct: 179 DREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 284
S +T+E D K I++ D NDN P F ++ YS +PEN VG
Sbjct: 77 SEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG------- 126
Query: 285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
+P+F V TD D G G V YS + F+I+
Sbjct: 127 -----TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAID 159
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPM 377
GI T+ +LDYE Y V A QD +P+
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 140
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 39 DNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 92
Query: 141 TTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 199
T +V+I + DVNDNAP F + IPEN+P+ T + + A D D G V YS
Sbjct: 93 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 151
Query: 200 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 236
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 152 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
ED P GS V Q+ D D N + + V + A+ F++ P +G+ L LD E
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
+ D + T V V D+NDN P F P ++ + EN +GT + V+A
Sbjct: 79 FTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 424 DLDSG 428
D D G
Sbjct: 136 DPDLG 140
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+P F Y+ + E+ P G+ + V TD D G G V YS + F+
Sbjct: 100 VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP--PSPFFA 157
Query: 61 INPQSGIFTLTAKLDYE 77
I+ GI T+ +LDYE
Sbjct: 158 IDSARGIVTVIQELDYE 174
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKD-RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
S +T+E D +G ++ K I++ D NDN P F ++ YS +PEN VG
Sbjct: 77 SEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG------ 126
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSI 343
+P+F V TD D G G V YS + F+I
Sbjct: 127 ------TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAI 158
Query: 344 NPQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPM 377
+ GI T+ +LDYE Y V A QD +P+
Sbjct: 159 DSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 140
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 39 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 92
Query: 141 TTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 199
T +V+I + DVNDNAP F IPEN+P+ T + + A D D G V YS
Sbjct: 93 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 151
Query: 200 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 236
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 152 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
ED P GS V Q+ D D N + + V + A+ F++ P +G+ L LD E
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
+ D + T V V D+NDN P F P ++ + EN +GT + V+A
Sbjct: 79 FTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 424 DLDSG 428
D D G
Sbjct: 136 DPDLG 140
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+P F Y+ + E+ P G+ + V TD D G G V YS + F+
Sbjct: 100 VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP--PSPFFA 157
Query: 61 INPQSGIFTLTAKLDYE 77
I+ GI T+ +LDYE
Sbjct: 158 IDSARGIVTVIQELDYE 174
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 44/238 (18%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
+PENS L I D +N + YS+ A F + P+ G L V + LD
Sbjct: 9 LPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
RE+ + + L A D + I ++D NDN P F + ++ SVPE G V
Sbjct: 68 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN-- 338
+ V+ + + P +NG++ Y ++S +
Sbjct: 128 MTVTAIDADDP------------------------------NALNGMLRYRILSQAPSTP 157
Query: 339 --DVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDT-GKPM--MSSTVTVYFNVVD 390
++F+IN ++G I T+ A LD E V Y ++QA D G P +S+T T V D
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 78 DVSDNGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP 133
D N L YS+ G D+ IF INP +G LS K LDRE + ++L A D+
Sbjct: 27 DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING- 85
Query: 134 PQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNS 190
++ + + I + D+NDN PEF+ ++PE S T V + AID D+ N
Sbjct: 86 --NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG 143
Query: 191 YVEYSIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPS 240
+ Y I++ + +TP F++ G ++ VA LDRE YTL I+A D G P+
Sbjct: 144 MLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHH 363
RG ++ +D N + YSV A+ +F INP SG ++T LD E +
Sbjct: 14 RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
+ A D + + + + NV+D+NDN P F N V E GT + +V A+
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 424 DLD 426
D D
Sbjct: 134 DAD 136
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 46/157 (29%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVSDWAN-- 56
V D NDN P F V+ V E G+ V V DAD+ +NG++ Y ++S +
Sbjct: 98 VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTP 157
Query: 57 --DVFSINPQSG-IFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHL 113
++F+IN ++G I T+ A L
Sbjct: 158 SPNMFTINNETGDIITVAAGL--------------------------------------- 178
Query: 114 DRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
DRE Y L++ ATDM P LS+T I + D
Sbjct: 179 DREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 284
S +T+E D K I++ NDN P F ++ YS +PEN VG
Sbjct: 77 SEFTVEFSVSDH---QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVG------- 126
Query: 285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
+P+F V TD D G G V YS + F+I+
Sbjct: 127 -----TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAID 159
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPM 377
GI T+ +LDYE Y V A QD +P+
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 140
DN L + + + F + P G + + LDRETKS + + +D +
Sbjct: 39 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD------HQGVI 92
Query: 141 TTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINS 199
T +V+I + VNDNAP F IPEN+P+ T + + A D D G V YS
Sbjct: 93 TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS-FQP 151
Query: 200 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR 236
+ F++ G++ V Q+LD E+ Y L + A D+
Sbjct: 152 PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
ED P GS V Q+ D D N + + V + A+ F++ P +G+ L LD E
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
+ D + T V V +NDN P F P ++ + EN +GT + V+A
Sbjct: 79 FTVEFSVSDHQGVI---TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 424 DLDSG 428
D D G
Sbjct: 136 DPDLG 140
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V NDN+P F Y+ + E+ P G+ + V TD D G G V YS + F+
Sbjct: 100 VGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP--PSPFFA 157
Query: 61 INPQSGIFTLTAKLDYE 77
I+ GI T+ +LDYE
Sbjct: 158 IDSARGIVTVIQELDYE 174
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 35/199 (17%)
Query: 196 IINSEA--TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLL 252
II E+ T F + DG + ++LDRE K+ Y L DR S +KF I++
Sbjct: 36 IIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVS 95
Query: 253 DENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRV 312
D NDN PIF K ++ SVPE +G +V +V+ + + P +
Sbjct: 96 DINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAG----------------- 138
Query: 313 GQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD 372
+ VTY ++ N+ F+++ IFT A LD E Y +V+A+D
Sbjct: 139 ------------HATVTYQIIK--GNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
Query: 373 T-GKPMMSSTVTVYFNVVD 390
G SST TV + D
Sbjct: 185 ALGLTGESSTATVIIRLTD 203
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
IF + +G + + LDRE K+ Y L D + + L ++ I + D+NDNAP
Sbjct: 45 IFKVQGYDGDIYAFERLDREKKAEYELTAHIID--RRNNRSLEPPSKFIIKVSDINDNAP 102
Query: 157 EFITA-NETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGL 212
F+ ++PE S L T V + A D D+ ++ V Y II F++ +
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY-FTVDDSGVI 161
Query: 213 LRVAQKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLD 253
LDRE +S Y + +KAKD G +SS IRL D
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVSDWAND 57
VSD NDN+P+F + ++ V E G+ V +V DAD+ + VTY ++ N+
Sbjct: 94 VSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIK--GNE 151
Query: 58 VFSINPQSGIFTLTAKLDYEDVS 80
F+++ IFT A LD E S
Sbjct: 152 YFTVDDSGVIFTARADLDRESQS 174
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 330 YSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDT-GKPMMSSTVTVYFNV 388
Y + + AN +F + G +LD E Y D + V
Sbjct: 35 YIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKV 94
Query: 389 VDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
D+NDN P+F N V E LGT + V A D D
Sbjct: 95 SDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD 132
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 56/332 (16%)
Query: 83 GRLEYSIVSGDDEEIFTI---NP-----SNGTLSNLKHLDRET---KSSYNLVVMATDMA 131
G+ + + D+E F I NP +NG + K D E + + + V+ T+M
Sbjct: 20 GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 79
Query: 132 KPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQ 188
+ + +V I+++DVND P FI + + N+P NT V L+A D D
Sbjct: 80 HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 139
Query: 189 NSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKF 247
N + Y I+ F + G++R ++ Y L +KA+D+
Sbjct: 140 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ----------- 186
Query: 248 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLP 307
N D + + ++ E +S+ +P F P Y ++ E+
Sbjct: 187 ----------NGKVDDRRFQSTPEERLSIVG--------GKRAPQFYMPSYEAEIPENQK 228
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSD-WANDVFSINPQSGIFTLTAKLDYEDV---HH 363
+ S + + A + + Y++ + F+I P SGI L +LD+ED+ H
Sbjct: 229 KDS---DIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHV 285
Query: 364 YIFVVQA-QDTGKPMMSSTVTVYFNVVDLNDN 394
Y +V A +D+G S++V + V D+NDN
Sbjct: 286 YSLIVTATEDSGG--FSTSVDLTIRVTDVNDN 315
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 85 LEYSI-VSGDDEEIFTINPSNGTLSNLKHLDRETKSS---YNLVVMATDMAKPPQKRLSS 140
+ Y++ G F I P++G + K LD E Y+L+V AT+ + S+
Sbjct: 246 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG----FST 301
Query: 141 TTQVSIVIRDVNDNA 155
+ ++I + DVNDNA
Sbjct: 302 SVDLTIRVTDVNDNA 316
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 7 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD-WANDVFSINPQS 65
+P F P Y ++ E+ + S + + A + + Y++ + F+I P S
Sbjct: 210 RAPQFYMPSYEAEIPENQKKDS---DIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTS 266
Query: 66 GIFTLTAKLDYEDV 79
GI L +LD+ED+
Sbjct: 267 GIVKLAKELDFEDL 280
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 59 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 118
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 119 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 146
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 147 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 206
Query: 383 TVYFNVVDLNDN 394
V D+NDN
Sbjct: 207 KAVITVKDINDN 218
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 44/160 (27%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN TY
Sbjct: 99 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN---TY------------ 143
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDR 115
N + Y+IVS D E +FT+N G +S L LDR
Sbjct: 144 ---------------------NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 182
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNA 155
E+ +Y LVV A D+ + LS+T + I ++D+NDNA
Sbjct: 183 ESYPTYTLVVQAADLQG---EGLSTTAKAVITVKDINDNA 219
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 51 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 107
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 108 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 167
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 257
G++ V LDRE YTL ++A D S+ K I + D NDN
Sbjct: 168 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 35 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 94
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 95 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 137
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + ++ ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVADPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + ++ +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKYILYSHADSSNG---EAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 57 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 116
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 117 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 144
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 145 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 204
Query: 383 TVYFNVVD 390
V D
Sbjct: 205 KAVITVKD 212
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 97 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 139
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 140 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 184
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 185 TYTLVVQAADLQG---EGLSTTAKAVITVKD 212
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 49 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 105
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 106 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 165
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 166 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 33 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 92
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 93 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 135
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 120 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 147
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 148 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 207
Query: 383 TVYFNVVD 390
V D
Sbjct: 208 KAVITVKD 215
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 100 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 142
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 143 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 187
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 188 TYTLVVQAADLQG---EGLSTTAKAVITVKD 215
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ + LT+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKS 119
T A + Y VS + L + + +FT+N G +S L LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 58 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
E G +V++VS TDAD+ V N
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFTL-TAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
+ Y++VS ++F++N +G+ ++ T+ LD E Y VVQA D +S+T
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
V D
Sbjct: 206 KAVITVKD 213
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
T A + Y VS + L + + +FT+N G +S + LDRE+
Sbjct: 141 --------TYNAAIAYTIVSQDPELPH-------KNMFTVNRDTGVISVDTSGLDRESYP 185
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ + LS+T + I ++D
Sbjct: 186 TYTLVVQAADLQG---EGLSTTAKAVITVKD 213
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y ++ + + + ++ I + D NDN P
Sbjct: 50 VFIIERETGWLKVTQPLDREAIAKY---ILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEYSIINSE-----ATPFSLG 207
EF E ++ E + T V + A D D+ N+Y + Y+I++ + F++
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 208 PVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
G++ V LDRE YTL ++A D S+ K I + D
Sbjct: 167 RDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTY---SVVSDWANDV 340
S NDN PVF E + E+ P G+ V Q+ TDAD G N + Y + V+ +
Sbjct: 5 SSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRL 64
Query: 341 FSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN 392
F++N +G+ T+ LD E+ + V A D +TVT+ NV D+N
Sbjct: 65 FALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI--NVTDVN 114
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FS 205
NDN P F E IPEN+P+ T V L A D D G N+ + Y I ++ P F+
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRY-IFGAQVAPATKRLFA 66
Query: 206 LGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDEN 255
L GL+ V + LDRE + + + + A D S +R I + D N
Sbjct: 67 LNNTTGLITVQRSLDREETAIHKVTVLASD--GSSTPARATVTINVTDVN 114
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 2 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTY---SVVSDWANDV 58
S NDN PVF E + E+ P G+ V Q+ TDAD G N + Y + V+ +
Sbjct: 5 SSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRL 64
Query: 59 FSINPQSGIFTLTAKLDYEDVS 80
F++N +G+ T+ LD E+ +
Sbjct: 65 FALNNTTGLITVQRSLDREETA 86
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
NDN P+F + + EN +GT + +HA D D G
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIG 44
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 159 ITANETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRV 215
I A IPEN P V + + EG + ++ + F + + G + V
Sbjct: 2 ILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 216 AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 275
+ LDRE +NY LE++ D + I ++D+NDN P+F Y V E
Sbjct: 62 TRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSP 121
Query: 276 VGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD 335
G TV++++ + + P + +++L+ P +
Sbjct: 122 TGTTVMRMTAFDADDPSTDNALLRYNILKQTP--------------------------TK 155
Query: 336 WANDVFSINPQSG-IFTLTAK--LDYEDVH--HYIFVVQAQDTG 374
+ ++F I+P+ G I T+ + LD E + Y V++A+D G
Sbjct: 156 PSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 143
RL V D + IF IN +G +S + LDRE ++Y L V TD++ K + +
Sbjct: 36 RLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSG---KIIDGPVR 92
Query: 144 VSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDE--GQNSYVEYSIINSE 200
+ I + D NDN P F + E SP T V + A D D+ N+ + Y+I+
Sbjct: 93 LDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQT 152
Query: 201 ATP-----FSLGPVDG-LLRVAQK--LDREIKS--NYTLEIKAKDRG 237
T F + P G ++ V LDRE Y L I+AKD G
Sbjct: 153 PTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371
VG+V ++ EG ++ V +F IN SG ++T LD E + +Y V+
Sbjct: 21 VGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVT 80
Query: 372 DTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
D ++ V + +V+D NDN P+F P V E GT + + A D D
Sbjct: 81 DLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDAD 135
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV--NGVVTYSVVSDWAN-- 56
V D NDN P+F E Y V+E P G+ V ++ DAD+ N ++ Y+++
Sbjct: 97 VIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKP 156
Query: 57 --DVFSINPQSG 66
++F I+P+ G
Sbjct: 157 SPNMFYIDPEKG 168
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 48/218 (22%)
Query: 168 ENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TP----FSLGPVDGLLRVAQKLDRE 222
E P + +K+ EG+ V YSI A TP F + G L+V + LDRE
Sbjct: 13 EKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE 69
Query: 223 IKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 282
+ YTL A + + I + D+NDN P F + + SV E G +V++
Sbjct: 70 RIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVME 129
Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGVVTYSVVSDWA-- 337
V+ TDAD+ V N + Y+++S
Sbjct: 130 VT--------------------------------ATDADDDVNTYNAAIAYTILSQDPEL 157
Query: 338 --NDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQD 372
++F+IN +G+ + +T LD E Y VVQA D
Sbjct: 158 PDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 41/135 (30%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V+E G+ V +V TDAD+ VN TY
Sbjct: 98 VTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVN---TY------------ 142
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD----DEEIFTINPSNGTLSNL-KHLDR 115
N + Y+I+S D D+ +FTIN + G +S + LDR
Sbjct: 143 ---------------------NAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDR 181
Query: 116 ETKSSYNLVVMATDM 130
E+ +Y LVV A D+
Sbjct: 182 ESFPTYTLVVQAADL 196
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 83 GRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRL 138
G++ YSI G D +F I G L + LDRE ++Y L A +
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNG---NAV 88
Query: 139 SSTTQVSIVIRDVNDNAPEFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY---VEY 194
++ I + D NDN PEF + ++ E + T V + A D D+ N+Y + Y
Sbjct: 89 EDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAY 148
Query: 195 SIINS-----EATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKD-RGE 238
+I++ + F++ G++ V LDRE YTL ++A D +GE
Sbjct: 149 TILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 326 GVVTYSVVSDWAN----DVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSST 381
G V YS+ A+ VF I ++G +T LD E + Y A + +
Sbjct: 32 GKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP 91
Query: 382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ + V D NDN P F V E GT + V A D D
Sbjct: 92 MEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDAD 136
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 143
RL V D + F IN + G++S + LDRET ++Y L V TD + K L
Sbjct: 37 RLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG---KTLEGPVP 93
Query: 144 VSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDE--GQNSYVEYSIINSE 200
+ +++ D NDN P F + E SP T V + A D D+ N+ + Y+I +
Sbjct: 94 LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNI--RQ 151
Query: 201 ATP-------FSLGPVDG-LLRVAQK--LDREIKSN--YTLEIKAKD 235
TP F + P G ++ V LDRE N Y L I+A+D
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371
VG+V +D EG +T V F IN +G ++T LD E + Y V+
Sbjct: 22 VGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 372 DTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
D + V + V+D NDN P+F P V E GT + + A D D
Sbjct: 82 DASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 34/215 (15%)
Query: 166 IPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDRE 222
IPEN P V + DR EG + ++ + F + G + V + LDRE
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE 69
Query: 223 IKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 282
+ Y L ++ D + + ++D+NDN PIF Y V E G TV++
Sbjct: 70 TIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMR 129
Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 342
++ + + P + +++ + P + ++F
Sbjct: 130 MTAFDADDPATDNALLRYNIRQQTP--------------------------DKPSPNMFY 163
Query: 343 INPQSG-IFTLT--AKLDYEDVHH--YIFVVQAQD 372
I+P+ G I T+ A LD E + + Y +++AQD
Sbjct: 164 IDPEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 47/159 (29%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P+F E Y V+E P G+ V ++ DAD
Sbjct: 98 VIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD--------------------- 136
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE----IFTINPSNG---TLSNLKHL 113
+ +DN L Y+I ++ +F I+P G T+ + L
Sbjct: 137 ----------------DPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALL 180
Query: 114 DRET--KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
DRET Y L++ A DMA L+ T +IVI D
Sbjct: 181 DRETLENPKYELIIEAQDMAG-LDVGLTGTATATIVIDD 218
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT-----TDADEGVNGVVTYSVVSD-- 335
V D NDNSP F Y V E P G+ + F+ TD D+G NG + Y + +
Sbjct: 117 VRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPE 176
Query: 336 --WANDVFSINPQ-SGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDL 391
+ND F I +G L +L+YED Y ++QA D + + T VDL
Sbjct: 177 DPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDL 235
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 143 QVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVV-----AALKAIDRDEGQNSYVEYSI 196
+V IV+RD NDN+P F + T+ E +P+ T + A D D+G N +EY I
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI 171
Query: 197 INSEATPFSLGPVD------GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSR 244
+ P S + G + + ++L+ E K+ Y + I+A DR + R
Sbjct: 172 QYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERR 225
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT-----TDADEGVNGVVTYSVVSD-- 53
V D NDNSP F Y V E P G+ + F+ TD D+G NG + Y + +
Sbjct: 117 VRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPE 176
Query: 54 --WANDVFSINPQ-SGIFTLTAKLDYED 78
+ND F I +G L +L+YED
Sbjct: 177 DPTSNDTFEIPLMLTGNVVLRKRLNYED 204
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
G L+V Q LDRE + Y L A + + I + D+NDN P F + + SV
Sbjct: 60 GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 271 PENISVGATVLQVSDTN 287
E G +V++VS T+
Sbjct: 120 AEGAVPGTSVMKVSATD 136
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
V YS+ A+ VF I ++G +T LD E + YI A + + +
Sbjct: 36 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 95
Query: 384 VYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
+ V D NDN P F V E GT + V A D D
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 212 LLRVAQKLDREIKSNYTLEIKAKDRGEPSKS----SRTKFFIRLLDENDNNPIFDSKSYS 267
L+++ D+E K Y++ + D+ P R ++++ D I YS
Sbjct: 23 LVQIKSNRDKETKVFYSITGQGADK--PPVGVFIIERETGWLKVTQPLDREAIAKYILYS 80
Query: 268 ASVPENISV----GATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG 323
+V N V+ V+D NDN P F++ V+ V E G+ V +V TDAD+
Sbjct: 81 HAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 140
Query: 324 VN 325
VN
Sbjct: 141 VN 142
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
+F I G L + LDRE + Y L A + + ++ I + D NDN P
Sbjct: 52 VFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNG---EAVEDPMEIVITVTDQNDNRP 108
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDEGQNSY 191
EF E ++ E + T V + A D D+ N+Y
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTY 144
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVN 43
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 100 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 85 LEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 140
L YS+ G D+ IF INP +G LS K LDRE + ++L A D+ ++ +
Sbjct: 36 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING---NQVEN 92
Query: 141 TTQVSIVIRDVNDNAPEF 158
+ I + D+NDN PEF
Sbjct: 93 PIDIVINVIDMNDNRPEF 110
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
+ YSV A+ +F INP SG ++T LD E + + A D + + +
Sbjct: 36 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 95
Query: 384 VYFNVVDLNDNPPLF 398
+ NV+D+NDN P F
Sbjct: 96 IVINVIDMNDNRPEF 110
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
+PENS L I +N + YS+ A F + P+ G L V + LD
Sbjct: 11 LPENS-RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 261
RE+ + + L A D + I ++D NDN P F
Sbjct: 70 RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 143
RL V + + IF IN + G++S + LDRE + Y L V TD+ K L
Sbjct: 36 RLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNG---KTLEGPVP 92
Query: 144 VSIVIRDVNDNAP 156
+ +++ D NDN P
Sbjct: 93 LEVIVIDQNDNRP 105
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371
VG+V +D E +T V +F IN +G ++T LD E + Y V+
Sbjct: 21 VGKVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETT 80
Query: 372 DTGKPMMSSTVTVYFNVVDLNDNPP 396
D + V + V+D NDN P
Sbjct: 81 DVNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 159 ITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP---FSLGPVDGLLRV 215
I + IPEN K +D D + S + + P F + G + V
Sbjct: 2 IVVSPILIPENQRQPFPRDVGKVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSV 61
Query: 216 AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
+ LDRE+ + Y L ++ D + + ++D+NDN P
Sbjct: 62 TRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
I E++P+ + V L A D D N + + + EA+ F ++ P G++ + Q LDRE K
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKDR 236
S +T+E D
Sbjct: 77 SEFTVEFSVSDH 88
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 22 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
ED P GS V Q+ D D N + + V + A+ F++ P +G+ L LD E S+
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 359
ED P GS V Q+ D D N + + V + A+ F++ P +G+ L LD E
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 129
DN L + + + F + P G + + LDRETKS + + +D
Sbjct: 39 DNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD 87
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 84 RLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDM 130
+++Y I+SGD IF IN G + +K LDRE K+ Y L A D
Sbjct: 34 KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF 80
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371
VG+V ++ EG ++ V +F IN SG ++T LD E + +Y V+
Sbjct: 21 VGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVT 80
Query: 372 DTGKPMMSSTVTVYFNVVD 390
D ++ V + +V+D
Sbjct: 81 DLSGKIIDGPVRLDISVID 99
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMA 131
RL V D + IF IN +G +S + LDRE ++Y L V TD++
Sbjct: 36 RLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLS 83
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 182 IDRDEGQNSYVEYSIINSEATP--FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR--G 237
+DR +G Y I++ E F++ G + Q+LDRE +S YTL +A DR G
Sbjct: 29 MDRGDGSIKY----ILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTG 84
Query: 238 EPSKSSRTKFFIRLLD 253
P + ++F I++ D
Sbjct: 85 RPME-PESEFIIKIQD 99
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 52 SDWA-NDVFSINPQSGIFTL-TAKLDYEDVSDNGRLEYSIVSGDDEEI-FTINPSNGTLS 108
S W N F + +G L KL + +G ++Y I+SG+ I FTI+ + G +
Sbjct: 1 SGWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKY-ILSGEGAGIVFTIDDTTGDIH 59
Query: 109 NLKHLDRETKSSYNLVVMATD 129
++ LDRE +S Y L A D
Sbjct: 60 AIQRLDREERSQYTLRAQALD 80
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 318 TDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD--TGK 375
+D D G +G + Y + + A VF+I+ +G +LD E+ Y QA D TG+
Sbjct: 27 SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGR 85
Query: 376 PM 377
PM
Sbjct: 86 PM 87
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 70 LTAKLDYEDVSDNGRLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
L +L + S +G ++Y I+SG+ IF I+ +G + K LDRE ++ Y L+ A
Sbjct: 21 LVGRLHSDIDSGDGNIKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV 79
Query: 129 D 129
D
Sbjct: 80 D 80
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMA 131
RL V D + F IN + G++S + LDRET ++Y L V TD +
Sbjct: 37 RLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDAS 84
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 304 EDLPRGSRVGQVFTTDADE-GVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDY 358
EDL + + + ++ + A+E G+ +TY + +F N +G +T+ LD
Sbjct: 23 EDLSKKNPIAKIHSDLAEERGLK--ITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDR 80
Query: 359 EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
E+ ++ A D + + + V+D+NDN P+F
Sbjct: 81 EETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 91 SGDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 129
G D+E IF IN ++G +S K LDRE SY L V TD
Sbjct: 40 KGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTD 81
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 165 TIPEN--SPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TP----FSLGPVDGLLRVAQ 217
+ PEN P + +K+ EG+ V YSI A TP F + G L+V +
Sbjct: 12 SCPENEKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTE 68
Query: 218 KLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 257
LDRE + YTL A + + I + D+NDN
Sbjct: 69 PLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|1WYJ|A Chain A, Solution Structure Of Mouse Protocadherin Beta 14 (26-137)
Length = 125
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 89 IVSGDDEEIFTINPSNGTLSNLKHLDRET--KSSYNLVVMATDMAKPPQKRLSSTTQVSI 146
I+S ++++ + +G L + LDRE S+ ++ + K P + + Q I
Sbjct: 48 ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFI----QGEI 103
Query: 147 VIRDVNDNAPEFI 159
++DVND+APEF+
Sbjct: 104 QLQDVNDHAPEFM 116
>pdb|1FRT|A Chain A, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
pdb|3FRU|A Chain A, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|C Chain C, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|E Chain E, Neonatal Fc Receptor, Ph 6.5
pdb|1I1A|A Chain A, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
Length = 269
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 66 GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSN 109
G FTL L E DN L ++ + + EE NP G S
Sbjct: 88 GTFTLQGLLGCELAPDNSSLPTAVFALNGEEFMRFNPRTGNWSG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,648,236
Number of Sequences: 62578
Number of extensions: 607500
Number of successful extensions: 1575
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 249
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)