Query psy6838
Match_columns 442
No_of_seqs 311 out of 1620
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 19:43:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q55_A EP-cadherin, C-cadherin 100.0 1.2E-69 4.1E-74 577.4 34.1 424 1-442 27-638 (880)
2 3q2v_A Cadherin-1; cell adhesi 100.0 4.9E-65 1.7E-69 519.4 41.0 362 1-440 98-482 (550)
3 1l3w_A EP-cadherin, C-cadherin 100.0 2E-65 6.9E-70 521.4 33.6 364 1-442 104-489 (546)
4 3q2w_A Cadherin-2; cell adhesi 100.0 3.9E-64 1.3E-68 513.8 39.8 362 1-436 98-484 (559)
5 3q2v_A Cadherin-1; cell adhesi 100.0 3.2E-59 1.1E-63 476.5 39.0 350 17-442 6-379 (550)
6 1l3w_A EP-cadherin, C-cadherin 100.0 8.3E-60 2.9E-64 480.1 33.2 352 15-442 10-385 (546)
7 3q2w_A Cadherin-2; cell adhesi 100.0 3.3E-59 1.1E-63 477.4 36.8 353 17-442 6-385 (559)
8 3ubh_A Neural-cadherin; cell a 100.0 1.3E-58 4.4E-63 457.1 39.6 340 27-436 8-366 (419)
9 1q55_A EP-cadherin, C-cadherin 100.0 1.8E-56 6.1E-61 476.2 28.1 357 1-400 253-696 (880)
10 3ubh_A Neural-cadherin; cell a 100.0 1.7E-54 5.8E-59 427.6 37.0 308 1-390 101-418 (419)
11 3ubf_A Neural-cadherin; cell a 100.0 1.6E-52 5.4E-57 398.5 34.3 297 27-395 3-316 (316)
12 2a62_A Cadherin-8; extracellul 100.0 7E-54 2.4E-58 407.1 24.0 297 17-389 6-322 (322)
13 2a62_A Cadherin-8; extracellul 100.0 7.7E-45 2.6E-49 345.0 19.7 245 162-442 5-263 (322)
14 3mvs_A Cadherin-23, otocadheri 100.0 3.9E-41 1.3E-45 300.8 22.6 205 5-258 2-210 (210)
15 2x2u_A Proto-oncogene tyrosine 100.0 4.5E-42 1.5E-46 313.7 12.0 220 10-262 2-245 (246)
16 3ubf_A Neural-cadherin; cell a 100.0 5E-40 1.7E-44 312.4 26.4 234 175-442 5-260 (316)
17 2a4e_A Cadherin-11; dimer, cal 100.0 1.7E-39 5.9E-44 290.2 25.4 201 16-260 6-215 (215)
18 2a4e_A Cadherin-11; dimer, cal 100.0 2.6E-39 9.1E-44 289.0 25.2 200 162-397 6-215 (215)
19 2x2u_A Proto-oncogene tyrosine 100.0 2.5E-41 8.6E-46 308.7 12.1 220 157-399 2-245 (246)
20 3mvs_A Cadherin-23, otocadheri 100.0 3.8E-39 1.3E-43 287.9 23.8 203 153-395 3-210 (210)
21 2qvi_A Cadherin-2; beta barrel 100.0 7.3E-37 2.5E-41 273.6 21.0 195 163-390 6-215 (215)
22 2qvi_A Cadherin-2; beta barrel 100.0 9.3E-37 3.2E-41 272.9 21.1 198 17-253 6-215 (215)
23 3qrb_A Cadherin-1; cell adhesi 100.0 4.5E-36 1.5E-40 268.8 22.8 196 17-253 6-213 (213)
24 3qrb_A Cadherin-1; cell adhesi 100.0 6.8E-36 2.3E-40 267.6 22.3 193 163-390 6-213 (213)
25 3ppe_A Vascular endothelial ca 100.0 3.9E-35 1.3E-39 260.2 25.3 190 17-253 6-203 (203)
26 3ppe_A Vascular endothelial ca 100.0 5.6E-35 1.9E-39 259.2 24.9 190 162-390 5-203 (203)
27 3k5r_A Cadherin 13; mouse, str 100.0 3.5E-35 1.2E-39 263.9 22.1 195 17-253 7-218 (218)
28 3k5r_A Cadherin 13; mouse, str 100.0 3.5E-35 1.2E-39 263.9 21.3 193 162-390 6-218 (218)
29 3lnd_A CDH6 protein, cadherin 100.0 1.2E-35 4E-40 264.7 16.2 193 162-390 5-207 (207)
30 3lnd_A CDH6 protein, cadherin 100.0 9.6E-36 3.3E-40 265.2 15.4 193 17-253 6-207 (207)
31 4apx_B Protocadherin-15, otoca 100.0 1.1E-30 3.7E-35 236.8 20.9 195 15-253 21-237 (242)
32 4apx_B Protocadherin-15, otoca 100.0 2.2E-30 7.6E-35 234.7 19.5 201 162-390 22-237 (242)
33 2yst_A Protocadherin-7; BH-PCD 99.9 5.3E-28 1.8E-32 195.3 10.0 116 1-156 4-119 (119)
34 2yst_A Protocadherin-7; BH-PCD 99.9 1.8E-26 6.2E-31 186.3 9.1 114 283-396 4-119 (119)
35 2ee0_A Protocadherin-9; Ca dom 99.9 1.2E-25 4.2E-30 179.7 9.9 111 1-152 4-114 (114)
36 2ee0_A Protocadherin-9; Ca dom 99.9 4.1E-24 1.4E-28 170.8 7.8 108 283-392 4-114 (114)
37 2yqg_A Desmoglein-2, HDGC; cad 99.9 1.8E-23 6.2E-28 169.2 7.0 113 287-400 6-122 (123)
38 2yqg_A Desmoglein-2, HDGC; cad 99.9 1.8E-22 6.1E-27 163.3 6.7 118 4-160 5-122 (123)
39 1ncg_A N-cadherin; cell adhesi 99.8 3E-21 1E-25 152.9 9.4 98 298-398 7-110 (110)
40 1ncg_A N-cadherin; cell adhesi 99.8 3.4E-20 1.2E-24 146.9 9.8 97 162-261 7-110 (110)
41 1wyj_A Protocadherin beta 14; 99.8 3.2E-20 1.1E-24 150.1 3.5 107 295-406 10-123 (125)
42 1zvn_A Mn-cadherin; strand dim 99.8 1.6E-18 5.3E-23 133.9 10.9 91 298-390 6-99 (99)
43 1zxk_A Cadherin-8; strand dime 99.8 1.9E-18 6.4E-23 133.3 10.7 91 298-390 5-98 (98)
44 1zvn_A Mn-cadherin; strand dim 99.7 1.2E-17 4.1E-22 129.0 11.0 90 162-253 6-99 (99)
45 1wyj_A Protocadherin beta 14; 99.7 4.7E-19 1.6E-23 143.2 2.6 104 162-270 13-124 (125)
46 3k6d_A T-cadherin; cell adhesi 99.7 1.1E-17 3.6E-22 129.6 9.9 89 298-390 5-99 (99)
47 1zxk_A Cadherin-8; strand dime 99.7 1.6E-17 5.4E-22 128.1 10.5 90 162-253 5-98 (98)
48 3k6f_A T-cadherin; cell adhesi 99.7 3.6E-17 1.2E-21 126.9 10.9 88 299-390 7-100 (100)
49 3k6i_A T-cadherin; cell adhesi 99.7 5.5E-17 1.9E-21 125.7 11.9 88 299-390 6-99 (99)
50 2omz_B Epithelial-cadherin; le 99.7 4.3E-17 1.5E-21 127.5 9.2 90 299-391 10-105 (105)
51 3k6d_A T-cadherin; cell adhesi 99.7 1.1E-16 3.7E-21 123.9 9.8 88 162-253 5-99 (99)
52 2omz_B Epithelial-cadherin; le 99.7 1.4E-16 4.9E-21 124.6 9.6 89 163-254 10-105 (105)
53 3k6f_A T-cadherin; cell adhesi 99.7 2.7E-16 9.2E-21 121.9 10.7 88 162-253 6-100 (100)
54 3k6i_A T-cadherin; cell adhesi 99.7 3.7E-16 1.3E-20 121.0 11.3 87 163-253 6-99 (99)
55 1wuz_A Pcdha4 protein, CNR-EC1 99.5 5.4E-15 1.8E-19 115.2 2.5 93 296-394 3-103 (103)
56 1wuz_A Pcdha4 protein, CNR-EC1 99.4 1.7E-14 5.8E-19 112.3 1.7 97 14-154 3-103 (103)
57 3pdd_A Glycoside hydrolase, fa 95.8 0.18 6E-06 43.0 12.8 118 117-253 59-180 (190)
58 1op4_A Neural-cadherin; beta s 94.4 0.26 9E-06 40.2 9.2 80 289-375 32-111 (159)
59 3pdd_A Glycoside hydrolase, fa 94.1 1.9 6.4E-05 36.5 14.7 30 360-390 151-180 (190)
60 3rb5_A Na/Ca exchange protein; 93.7 1.6 5.4E-05 39.9 14.2 72 364-438 91-165 (298)
61 3rb5_A Na/Ca exchange protein; 92.7 5.8 0.0002 36.1 18.8 46 152-200 6-52 (298)
62 2kpn_A Bacillolysin; solution 92.1 0.6 2.1E-05 35.1 7.5 45 107-156 47-91 (103)
63 2yhg_A SDE_182CT, cellulose-bi 89.7 1.7 5.8E-05 41.6 9.8 68 318-389 365-437 (437)
64 2yrl_A KIAA1837 protein; PKD d 87.1 2.9 0.0001 31.3 7.9 32 360-393 67-98 (102)
65 1op4_A Neural-cadherin; beta s 87.0 5.7 0.00019 32.3 9.9 80 6-132 31-111 (159)
66 2kpn_A Bacillolysin; solution 85.5 2.1 7.3E-05 32.1 6.2 47 349-397 46-92 (103)
67 2yhg_A SDE_182CT, cellulose-bi 85.0 4.2 0.00015 38.9 9.5 66 182-251 365-436 (437)
68 2yrl_A KIAA1837 protein; PKD d 76.1 5.8 0.0002 29.6 5.8 32 117-153 67-98 (102)
69 3pe9_A Fibronectin(III)-like m 74.5 21 0.00071 26.4 8.4 72 173-253 17-88 (98)
70 2y72_A Collagenase, collagenas 73.2 7.9 0.00027 27.6 5.8 31 357-389 54-84 (85)
71 3ead_A Na/Ca exchange protein; 69.7 23 0.00078 27.9 8.3 25 385-410 108-132 (137)
72 3us9_A Sodium/calcium exchange 66.9 73 0.0025 28.7 16.0 54 382-438 128-183 (295)
73 2y72_A Collagenase, collagenas 66.0 13 0.00045 26.4 5.6 30 115-149 55-84 (85)
74 1u2c_A Dystroglycan; IG-like d 62.4 34 0.0012 29.7 8.3 64 328-393 33-104 (246)
75 3ead_A Na/Ca exchange protein; 59.7 61 0.0021 25.3 10.7 36 162-200 12-47 (137)
76 3pe9_A Fibronectin(III)-like m 52.6 66 0.0022 23.6 9.0 29 118-150 60-88 (98)
77 1u2c_A Dystroglycan; IG-like d 50.9 59 0.002 28.3 7.9 54 201-256 46-104 (246)
78 3us9_A Sodium/calcium exchange 46.1 1.7E+02 0.0057 26.3 23.4 42 157-200 12-53 (295)
79 3ott_A Two-component system se 45.0 66 0.0023 33.1 9.0 78 177-263 676-753 (758)
80 3l5i_A Interleukin-6 receptor 33.5 2.3E+02 0.0079 24.3 13.2 20 222-241 165-184 (290)
81 3ott_A Two-component system se 32.8 1.2E+02 0.004 31.2 8.5 72 313-389 676-747 (758)
82 2c4x_A Endoglucanase, ctcel9D- 32.6 2E+02 0.0067 25.3 8.6 35 356-392 63-97 (260)
83 1b4r_A Protein (PKD1_human); P 32.4 74 0.0025 22.3 4.7 29 358-389 51-79 (80)
84 2c4x_A Endoglucanase, ctcel9D- 28.6 3E+02 0.01 24.1 11.9 34 219-254 63-96 (260)
85 4a2l_A BT_4663, two-component 27.9 2.6E+02 0.0088 28.7 10.2 76 309-390 707-782 (795)
86 2ptt_B Natural killer cell rec 27.3 1.4E+02 0.0047 22.4 5.6 47 339-390 66-112 (112)
87 1wgo_A VPS10 domain-containing 24.6 69 0.0024 24.4 3.5 29 358-389 90-118 (123)
88 3gin_A Sodium/calcium exchange 24.5 2.7E+02 0.0093 22.3 8.4 65 318-389 48-112 (160)
89 2e7m_A Protein KIAA0319; PKD d 23.9 1.7E+02 0.0058 22.0 5.5 38 346-390 68-105 (113)
90 3v9f_A Two-component system se 21.5 1.8E+02 0.0061 29.9 7.4 70 178-252 706-775 (781)
91 2kzw_A Uncharacterized protein 20.1 1.6E+02 0.0056 23.2 5.2 32 356-390 108-139 (145)
92 1b4r_A Protein (PKD1_human); P 20.0 1.9E+02 0.0064 20.2 4.9 29 115-149 51-79 (80)
No 1
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=1.2e-69 Score=577.38 Aligned_cols=424 Identities=28% Similarity=0.424 Sum_probs=319.5
Q ss_pred CCcCCCCCCccCCCeEEEEEe-cCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccc
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVL-EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV 79 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~-E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~ 79 (442)
|.|+|||+|.|.+..|.++|+ |+.++|+.|+++.|+|+|. ++.++|++. ..+|+|++ +|.|++++.||++..
T Consensus 27 ~~d~ndn~P~F~~~~y~~~v~~e~~~~Gt~V~~v~a~D~D~--n~~i~Y~~~----~~~F~Id~-~G~i~~~~~Ld~e~~ 99 (880)
T 1q55_A 27 NADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT--RKHGLYDVG----DSRFRVLP-DGTVLVKRHVKLHKD 99 (880)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCCccCCCeEEEEechhhCCCCCEEEEEEEEeCCC--CceEEEEeC----CCCEEECC-CceEEECCccccccc
Confidence 579999999999999999999 9999999999999999993 778999984 35999998 799998887776531
Q ss_pred c-------------------------------------------------------------------------------
Q psy6838 80 S------------------------------------------------------------------------------- 80 (442)
Q Consensus 80 ~------------------------------------------------------------------------------- 80 (442)
-
T Consensus 100 ~~l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~~~~~~~v~~v 179 (880)
T 1q55_A 100 TKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI 179 (880)
T ss_dssp --------------------------------------------------------CCCCCCEEEESSCCSSSCEEEEEC
T ss_pred eEEEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCCCCCCeEEEEE
Confidence 0
Q ss_pred -----CCCcEEEEEEeCCC----CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEec
Q psy6838 81 -----DNGRLEYSIVSGDD----EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV 151 (442)
Q Consensus 81 -----~~~~i~y~i~~~~~----~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dv 151 (442)
.++.++|+|.+++. .++|.|++.+|.|++.++||||+...|.|+|+|+|.++++ ++.+++|.|+|.|+
T Consensus 180 ~~d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~g~~~---~~~~~~v~I~V~Dv 256 (880)
T 1q55_A 180 KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQ 256 (880)
T ss_dssp CCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCB---CSCCEEEEEEEECC
T ss_pred eeCCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEEEEEEEECCCCc---eeeeEEEEEEEEec
Confidence 13457899987653 3689999999999999999999999999999999998764 57789999999999
Q ss_pred cCCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCc
Q psy6838 152 NDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDR 221 (442)
Q Consensus 152 Nd~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~ 221 (442)
|||+|.|... |.++|+|++++|+.|+++.|+|+|.+ .|+.++|+|.++. .+.|.|++.+|.|++. +.|||
T Consensus 257 NDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDr 336 (880)
T 1q55_A 257 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336 (880)
T ss_dssp SCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCT
T ss_pred CCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCH
Confidence 9999999977 89999999999999999999999998 6889999998765 3689999999999985 78999
Q ss_pred ccccEEEEEEEEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEE-------------------
Q psy6838 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ------------------- 282 (442)
Q Consensus 222 e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~------------------- 282 (442)
|....|.|.|+|+|+|+++++++++|+|+|.|+|||+|.|....|.+.|+|+ ++|+.+++
T Consensus 337 E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ys 415 (880)
T 1q55_A 337 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYK 415 (880)
T ss_dssp TTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECC
T ss_pred HHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEE
Confidence 9999999999999999888999999999999999999999999999999999 77766543
Q ss_pred --------------------------------------------------------------EeecCCCCCccCCcceeE
Q psy6838 283 --------------------------------------------------------------VSDTNDNSPVFSEPVYAF 300 (442)
Q Consensus 283 --------------------------------------------------------------v~~~n~~~p~~~~~~~~~ 300 (442)
|.++|+ +|.|....|.+
T Consensus 416 i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~ 494 (880)
T 1q55_A 416 IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRV 494 (880)
T ss_dssp BSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECC
T ss_pred EecCCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecCceEE
Confidence 556788 99999999999
Q ss_pred EEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEEEEEEECCCC
Q psy6838 301 DVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFVVQAQDTGKP 376 (442)
Q Consensus 301 ~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~V~a~D~~~~ 376 (442)
.|.|+.++|+.|+++.|+|+|.+.++.++|+|.+ +..++|.|++.+|.|++.+.||||.. ..|+|+|.|+|+|.|
T Consensus 495 ~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~-~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~p 573 (880)
T 1q55_A 495 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS 573 (880)
T ss_dssp CBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSS
T ss_pred EEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECC-CCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999984 45789999999999999999999997 899999999999999
Q ss_pred CceEEEEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEeeCCCCCC
Q psy6838 377 MMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPIGDFDLL 442 (442)
Q Consensus 377 ~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~~~~~~f 442 (442)
+++++++|+|+|.|+|||+|.|.+. ...++|+.+.|+ + |.|+|+|.+ .++|+|.+++.+.|
T Consensus 574 ~~sst~tv~I~V~DvNDn~P~f~~~--~~~v~E~~~~g~-v--v~A~D~D~~~n~~~~~ysl~~~~~~~f 638 (880)
T 1q55_A 574 VGTGTGTLILHVLDVNDNGPVPSPR--VFTMCDQNPEPQ-V--LTISDADIPPNTYPYKVSLSHGSDLTW 638 (880)
T ss_dssp CCCCCEEEECCBCCCCCSCCCBSCC--CEEECSSSCCCE-E--EEBCCSSCTTTTCCCCCBCCSCSSSSC
T ss_pred CcEeEEEEEEEEEeCCCCCCCccCc--ceEEecCCCCCe-E--EEEecCCCCCCCceEEEEECCCCCCCe
Confidence 9999999999999999999999853 688999999997 3 999999998 38999998876655
No 2
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=4.9e-65 Score=519.44 Aligned_cols=362 Identities=30% Similarity=0.470 Sum_probs=320.5
Q ss_pred CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccc
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~ 77 (442)
|.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.++.+.
T Consensus 98 V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~--------------------- 156 (550)
T 3q2v_A 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPE--------------------- 156 (550)
T ss_dssp EECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESC---------------------
T ss_pred EEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCC---------------------
Confidence 67999999999999999999999999999999999999998 678888888763210
Q ss_pred cccCCCcEEEEEEeCCCCCcEEEeCCccEEEE-cccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838 78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSN-LKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156 (442)
Q Consensus 78 ~~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~-~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P 156 (442)
....++|.|++.+|.|.+ .++||||....|.|+|+|+|+++++ ++++++|.|+|.|+|||+|
T Consensus 157 --------------~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~---~s~t~~v~I~V~DvNDn~P 219 (550)
T 3q2v_A 157 --------------LPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG---LSTTAKAVITVKDINDNAP 219 (550)
T ss_dssp --------------CSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTS---CCCEEEEEEEEECCSCSCC
T ss_pred --------------CCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCC---eeEEEEEEEEecccCCCCC
Confidence 013467888888999987 4789999999999999999987764 7899999999999999999
Q ss_pred eeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCc--eEEEEEecCCCCCeEec----CcceEEEEcccCCcccccEEEE
Q psy6838 157 EFITA-NETTIPENSPLNTVVAALKAIDRDEGQNS--YVEYSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYTL 229 (442)
Q Consensus 157 ~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~--~~~y~i~~~~~~~F~id----~~tG~i~~~~~lD~e~~~~~~l 229 (442)
.|... |.+.|.|+ ++|+.++++.|+|+|.+.++ .++|+|.+...++|.|+ +.+|.|++.++||||....|.|
T Consensus 220 ~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l 298 (550)
T 3q2v_A 220 VFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYIL 298 (550)
T ss_dssp EESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESSCSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEE
T ss_pred EEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEeCCCCcEEEEecCCCccEEEEecccCCccccceEEE
Confidence 99886 89999999 99999999999999998776 46799998667889998 6899999999999999999999
Q ss_pred EEEEEeCCC---CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCC
Q psy6838 230 EIKAKDRGE---PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDL 306 (442)
Q Consensus 230 ~V~a~D~~~---~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~ 306 (442)
.|+|+|++. +.++++++|+|.|.|+|| +|.|....|. +.|.|++
T Consensus 299 ~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~--------------------------------~~v~E~~ 345 (550)
T 3q2v_A 299 HVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERR--------------------------------VEVPEDF 345 (550)
T ss_dssp EEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCE--------------------------------EEEETTC
T ss_pred EEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcceE--------------------------------EEEecCC
Confidence 999999873 458899999999999999 9999776554 4556666
Q ss_pred CCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC-----cEEEEEEEEEECCCCCceEE
Q psy6838 307 PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV-----HHYIFVVQAQDTGKPMMSST 381 (442)
Q Consensus 307 ~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~-----~~~~l~V~a~D~~~~~~~~~ 381 (442)
++|+.|+++.|+|+|.+.++.++|+|.+ +..++|.|++.+|.|++.+.||||.. ..|.|+|+|+|+|.|+++++
T Consensus 346 ~~gt~v~~v~A~D~D~g~n~~i~y~i~~-~~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~p~~s~~ 424 (550)
T 3q2v_A 346 GVGQEITSYTAREPDTFMDQKITYRIWR-DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGT 424 (550)
T ss_dssp CSSCEEEECCEECCCCSTTCCCEEEEEE-CTTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSSSCCCEE
T ss_pred CCCCEEEEEeCCCCCCCCCCCEEEEEec-CCCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEeCCCCcceeE
Confidence 7777777778899999999999999974 56789999999999999999999998 89999999999999999999
Q ss_pred EEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEeeCCCC
Q psy6838 382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPIGDFD 440 (442)
Q Consensus 382 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~~~~~ 440 (442)
++|+|+|.|+|||+|.|.+ +...++|+.+.|.. |.|+|+|.+ .++|+|..++.+
T Consensus 425 ~~v~I~V~DvNDn~P~~~~--~~~~v~e~~~~~~~---v~A~D~D~~~n~~~~~~~l~~~~~~ 482 (550)
T 3q2v_A 425 GTLLLVLLDVNDNAPIPEP--RNMQFCQRNPQPHI---ITILDPDLPPNTSPFTAELTHGASV 482 (550)
T ss_dssp EEEEEEEECCCCCCCEESC--SSCEEESSSCCCEE---EEEECCSCTTSSSSCCCEEEECCSS
T ss_pred EEEEEEEEeCCCCCCcCcC--cccceeecCCCcEE---EEEECCCCCCCCCCEEEEECCCCCC
Confidence 9999999999999999974 67889999877653 999999998 589999988764
No 3
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=2e-65 Score=521.38 Aligned_cols=364 Identities=29% Similarity=0.406 Sum_probs=320.4
Q ss_pred CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccc
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~ 77 (442)
|.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.++.+.
T Consensus 104 V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~--------------------- 162 (546)
T 1l3w_A 104 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE--------------------- 162 (546)
T ss_dssp EECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSC---------------------
T ss_pred EEecccCcCEecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCC---------------------
Confidence 67999999999999999999999999999999999999988 577788877653210
Q ss_pred cccCCCcEEEEEEeCCCCCcEEEeCCccEEEEc-ccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838 78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNL-KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156 (442)
Q Consensus 78 ~~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~-~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P 156 (442)
....++|.|++.+|.|++. +.||||....|.|+|+|+|+++++ ++++++|.|+|.|+|||+|
T Consensus 163 --------------~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~---~s~~~~v~I~V~DvNDn~P 225 (546)
T 1l3w_A 163 --------------EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAP 225 (546)
T ss_dssp --------------CSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS---CEEECCEEEEEECCCCCCC
T ss_pred --------------cccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCC---cceEEEEEEEEeecCCCCC
Confidence 0134678888889999885 789999999999999999998764 7999999999999999999
Q ss_pred eeccC-CeeEeeCCCCCCcEEEEEEEEeCC--CCCCceEEEEEecCCCCCeEec----CcceEEEEcccCCcccccEEEE
Q psy6838 157 EFITA-NETTIPENSPLNTVVAALKAIDRD--EGQNSYVEYSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYTL 229 (442)
Q Consensus 157 ~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D--~~~~~~~~y~i~~~~~~~F~id----~~tG~i~~~~~lD~e~~~~~~l 229 (442)
.|... |...|+|+ ++|+.|+++.|+|+| .+.|+.++|+|.+...+.|.|+ ..+|.|++.++||||....|.|
T Consensus 226 ~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l 304 (546)
T 1l3w_A 226 IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVL 304 (546)
T ss_dssp CBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEE
T ss_pred ccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEeCCCceEEEEecCCCCeEEEEECccCCcccccEEEE
Confidence 99987 89999999 999999999999999 6788999999998446789995 2689999999999999999999
Q ss_pred EEEEEeCCC---CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCC
Q psy6838 230 EIKAKDRGE---PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDL 306 (442)
Q Consensus 230 ~V~a~D~~~---~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~ 306 (442)
.|+|+|++. +.++++++|+|.|.|+|| +|.|....|.+.++ |+.
T Consensus 305 ~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~--------------------------------En~ 351 (546)
T 1l3w_A 305 QITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVS--------------------------------EDL 351 (546)
T ss_dssp EECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBC--------------------------------TTC
T ss_pred EEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEe--------------------------------CCC
Confidence 999999873 467899999999999999 99998776655554 555
Q ss_pred CCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEEEEEEECCCCCceEEE
Q psy6838 307 PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFVVQAQDTGKPMMSSTV 382 (442)
Q Consensus 307 ~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~V~a~D~~~~~~~~~~ 382 (442)
++|+.++++.|+|+|.+.++.++|+|.+ +..++|.|++.+|.|++.+.||||.. ..|.|+|+|+|+|.|++++++
T Consensus 352 ~~g~~v~~v~A~D~D~g~n~~i~ysi~~-~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~p~~s~~~ 430 (546)
T 1l3w_A 352 SRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 430 (546)
T ss_dssp CSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCE
T ss_pred CCCCEEEEEEEECCCCCCCceEEEEECC-CCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEECCCCCcEeEE
Confidence 5666666777799999999999999984 45689999999999999999999997 899999999999999999999
Q ss_pred EEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEeeCCCCCC
Q psy6838 383 TVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPIGDFDLL 442 (442)
Q Consensus 383 ~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~~~~~~f 442 (442)
+|+|+|.|+|||+|.|.+ +...|+|+.+.|+ + +.|+|+|.+ .++|+|.+++.+.|
T Consensus 431 ~v~I~V~DvNDn~P~f~~--~~~~v~e~~~~g~-v--v~A~D~D~~~n~~~~~y~l~~~~~~~f 489 (546)
T 1l3w_A 431 TLILHVLDVNDNGPVPSP--RVFTMCDQNPEPQ-V--LTISDADIPPNTYPYKVSLSHGSDLTW 489 (546)
T ss_dssp EEECCBCCCCCSCCCBSC--CCEEECSSSCCCE-E--EEBCCSSCTTTTCCCCCBCCSCSSSSC
T ss_pred EEEEEEEECCCCcCCccC--ceEEEecCCCCCe-E--EEEEeCCCCCCCccEEEEECCCCCCCE
Confidence 999999999999999985 3688999999997 3 999999998 38999998876655
No 4
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=3.9e-64 Score=513.77 Aligned_cols=362 Identities=30% Similarity=0.451 Sum_probs=316.6
Q ss_pred CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC--CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccc
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG--VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED 78 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~--~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~ 78 (442)
|.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.++.+.
T Consensus 98 V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~---------------------- 155 (559)
T 3q2w_A 98 VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPS---------------------- 155 (559)
T ss_dssp EECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESC----------------------
T ss_pred EEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCC----------------------
Confidence 67999999999999999999999999999999999999986 578888888653110
Q ss_pred ccCCCcEEEEEEeCCCCCcEEEeCCccEEEEcc-cCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCe
Q psy6838 79 VSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLK-HLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE 157 (442)
Q Consensus 79 ~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~-~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~ 157 (442)
....++|.|++.+|.|.+.+ .||||+...|.|+|+|+|+++.+..+++++++|.|+|.|+|||+|.
T Consensus 156 -------------~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~ 222 (559)
T 3q2w_A 156 -------------TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPE 222 (559)
T ss_dssp -------------CSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCE
T ss_pred -------------CCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCc
Confidence 01126788888899998887 9999999999999999998764333479999999999999999999
Q ss_pred eccC-CeeEeeCCCCCCcEEEEEEEEeCCCCC--CceEEEEEecCC-CCCeEe----cCcceEEEEcccCCcccccEEEE
Q psy6838 158 FITA-NETTIPENSPLNTVVAALKAIDRDEGQ--NSYVEYSIINSE-ATPFSL----GPVDGLLRVAQKLDREIKSNYTL 229 (442)
Q Consensus 158 f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~--~~~~~y~i~~~~-~~~F~i----d~~tG~i~~~~~lD~e~~~~~~l 229 (442)
|... |...|+|+. +|+.++++.|+|+|.+. ++.++|+|..++ .++|.| ++.+|.|++.++||||....|.|
T Consensus 223 f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l 301 (559)
T 3q2w_A 223 FTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVL 301 (559)
T ss_dssp ESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEE
T ss_pred cccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEE
Confidence 9987 889999997 89999999999999975 567999998876 678999 57899999999999999999999
Q ss_pred EEEEEeCC------CCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEe
Q psy6838 230 EIKAKDRG------EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVL 303 (442)
Q Consensus 230 ~V~a~D~~------~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~ 303 (442)
+|.|+|++ .++++++++|+|.|.|+|| +|.|....|. +.|.
T Consensus 302 ~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~--------------------------------~~v~ 348 (559)
T 3q2w_A 302 TVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKI--------------------------------IRQE 348 (559)
T ss_dssp EEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEE--------------------------------EEEE
T ss_pred EEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceE--------------------------------EEEe
Confidence 99999974 2568999999999999999 6888766544 4566
Q ss_pred cCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEEEEEEECCCCCce
Q psy6838 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFVVQAQDTGKPMMS 379 (442)
Q Consensus 304 E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~V~a~D~~~~~~~ 379 (442)
|+.++|+.|+++.|+|+|.+.|+.++|+|.+ +..++|.|++.+|.|++.+.||||.. ..|.|+|+|+|+|.|+++
T Consensus 349 En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~-~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~s 427 (559)
T 3q2w_A 349 EGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMS 427 (559)
T ss_dssp SCCCTTCEEEECCEECSCSSSCCCEEEEEEE-CTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCCE
T ss_pred CCCCCCCEEEEEEEECCCCCCCCceEEEEcc-CCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcce
Confidence 6777777788888899999999999999985 45689999999999999999999976 899999999999999999
Q ss_pred EEEEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEee
Q psy6838 380 STVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPI 436 (442)
Q Consensus 380 ~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~ 436 (442)
++++|.|+|.|+|||+|.|.+.. ..++|+ .+..+++|.|+|+|.+ .++|+|..
T Consensus 428 s~~~v~I~V~DvNDn~P~f~~~~--~~v~e~--~~~~v~~v~A~D~D~~~n~~~~~ysl~~ 484 (559)
T 3q2w_A 428 GTGTLQIYLLDINDNAPQVLPQE--AETCET--PEPNSINITALDYDIDPNAGPFAFDLPL 484 (559)
T ss_dssp EEEEEEEEEECCSCCCCEESCTT--CCCCSC--CCTTCEEECEECSCCTTSSSSCEEECCS
T ss_pred EEEEEEEEEEEccCCCCcccCCc--eEEeec--CCCcEEEEEEEcCCCCCCCCCEEEEEcC
Confidence 99999999999999999998654 457888 4555789999999996 69999985
No 5
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=3.2e-59 Score=476.53 Aligned_cols=350 Identities=27% Similarity=0.407 Sum_probs=307.3
Q ss_pred EEEEecCCC--CCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838 17 AFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD 94 (442)
Q Consensus 17 ~~~v~E~~~--~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~ 94 (442)
.++|+|+.+ .++.|+++.| |.|. ++.++|+|.++.. .+..
T Consensus 6 ~~~v~En~~~~~~~~v~~v~a-d~d~--~~~v~Ysi~~~~~-----------------------------------~~~~ 47 (550)
T 3q2v_A 6 PISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGA-----------------------------------DKPP 47 (550)
T ss_dssp CEEEETTCCSSSSEEEEECEE-GGGG--TSCEEEEEESBTT-----------------------------------TBSS
T ss_pred CEEEeCCCCCCcCeEEEEEec-CCCC--CceEEEEEECCCC-----------------------------------CCCC
Confidence 479999985 5788999999 7765 6677777764210 0123
Q ss_pred CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838 95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN 173 (442)
Q Consensus 95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g 173 (442)
.++|.|++.+|.|++.++||||+...|.|+|+|+|.++++ ++.++.|.|+|.|+|||+|.|... |.+.|+|++++|
T Consensus 48 ~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d~~~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~G 124 (550)
T 3q2v_A 48 VGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG 124 (550)
T ss_dssp CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCB---CSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTT
T ss_pred CceEEEeCCceEEEECCccCcccCCeeEEEEEEEeCCCCc---ccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCC
Confidence 4689999999999999999999999999999999998764 567889999999999999999977 899999999999
Q ss_pred cEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEE-cccCCcccccEEEEEEEEEeCCCCCCcee
Q psy6838 174 TVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSR 244 (442)
Q Consensus 174 ~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~-~~~lD~e~~~~~~l~V~a~D~~~~~~~~~ 244 (442)
+.++++.|+|+|.+ .|+.++|+|.++. .+.|.|++.+|.|++ .++||||....|.|.|+|+|+|+++++++
T Consensus 125 t~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t 204 (550)
T 3q2v_A 125 TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204 (550)
T ss_dssp CEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCE
T ss_pred CEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEE
Confidence 99999999999998 7899999998753 468999999999988 47999999999999999999988899999
Q ss_pred EEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCC
Q psy6838 245 TKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV 324 (442)
Q Consensus 245 ~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~ 324 (442)
++|+|+|.|+|||+|.|....|.+. |.|+ +.|+.++++.|+|+|.+.
T Consensus 205 ~~v~I~V~DvNDn~P~F~~~~y~~~--------------------------------V~En-~~g~~v~~v~a~D~D~~~ 251 (550)
T 3q2v_A 205 AKAVITVKDINDNAPVFNPSTYQGQ--------------------------------VPEN-EVNARIATLKVTDDDAPN 251 (550)
T ss_dssp EEEEEEEECCSCSCCEESSSEEEEE--------------------------------EESS-CSSCCCEEECEECCSCTT
T ss_pred EEEEEEecccCCCCCEEecceeEEE--------------------------------EecC-CCCCEEEEEEEEECCCCC
Confidence 9999999999999999987765544 5555 566667777779999987
Q ss_pred Ce--EEEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccCcEEEEEEEEEECCC---CCceEEEEEEEEEeeCCCCC
Q psy6838 325 NG--VVTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK---PMMSSTVTVYFNVVDLNDNP 395 (442)
Q Consensus 325 ~~--~i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~---~~~~~~~~v~I~V~dvNd~~ 395 (442)
++ .++|+|.. +..++|.|+ ..+|.|++.+.||||....|.|+|+|+|++. |.++++++|+|+|.|+|| +
T Consensus 252 n~~~~~~ysi~~-~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~ 329 (550)
T 3q2v_A 252 TPAWKAVYTVVN-DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-A 329 (550)
T ss_dssp STTTCEEEEESS-CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-C
T ss_pred CCcEEEEEEEEe-CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-C
Confidence 76 46799986 677899998 7899999999999999999999999999873 557899999999999999 9
Q ss_pred CccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCCCCC
Q psy6838 396 PLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDFDLL 442 (442)
Q Consensus 396 P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~~~f 442 (442)
|.|.+..|.+.|+|+++.|+.++++.|+|+|.+ .++|+|.++..++|
T Consensus 330 P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~i~~~~~~~f 379 (550)
T 3q2v_A 330 PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWL 379 (550)
T ss_dssp CEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCCEEEEEECTTCCE
T ss_pred CeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCEEEEEecCCCCcE
Confidence 999999999999999999999999999999996 99999988767776
No 6
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=8.3e-60 Score=480.06 Aligned_cols=352 Identities=29% Similarity=0.414 Sum_probs=305.2
Q ss_pred eEEEEEecCCC--CCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeC
Q psy6838 15 VYAFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSG 92 (442)
Q Consensus 15 ~~~~~v~E~~~--~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~ 92 (442)
.|.++|+||++ .+..|+++.+ |.| .++.++|+|..+... .
T Consensus 10 ~~~~~v~En~~g~~~~~v~~~~~-d~d--~n~~v~Ysi~~~~~~-----------------------------------~ 51 (546)
T 1l3w_A 10 IPPIKVSENERGPFPKRLVQIKS-NKD--RFNKVYYSITGQGAD-----------------------------------N 51 (546)
T ss_dssp CCCEEEESSCCSSSCEEEEECCC-SGG--GSSCEEEEEEEBTTT-----------------------------------B
T ss_pred cceeEecCCCCCCCCcEEEEEEc-CCC--CCceEEEEEECCCCC-----------------------------------C
Confidence 46789999997 2344666664 544 577777777652110 0
Q ss_pred CCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCC
Q psy6838 93 DDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSP 171 (442)
Q Consensus 93 ~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~ 171 (442)
...++|.|++.+|.|++.++||||+...|.|+|+|+|.++++ +++++.|.|.|.|+|||+|.|... |.+.|+|+++
T Consensus 52 ~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~~~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~ 128 (546)
T 1l3w_A 52 PPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQ 128 (546)
T ss_dssp SSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCB---CSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCC
T ss_pred CCCceEEEeCCccEEEECCcCCcccCceEEEEEEEEeCCCCc---ccceEEEEEEEEecccCcCEecCceeEEEEECCCC
Confidence 124688888899999999999999999999999999998764 577899999999999999999976 8999999999
Q ss_pred CCcEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCCCCc
Q psy6838 172 LNTVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSKS 242 (442)
Q Consensus 172 ~g~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~~~~ 242 (442)
+|+.++++.|+|+|.+ .|+.++|+|.++. .++|.|++.+|.|++. ++||||....|.|.|+|+|+|+|+++
T Consensus 129 ~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s 208 (546)
T 1l3w_A 129 PGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLS 208 (546)
T ss_dssp SSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCE
T ss_pred CCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcc
Confidence 9999999999999998 6889999998765 3689999999999985 79999999999999999999988999
Q ss_pred eeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCC-
Q psy6838 243 SRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDAD- 321 (442)
Q Consensus 243 ~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D- 321 (442)
++++|+|.|.|+|||+|.|....|.+ .|.|+ ++|+.++++.|+|+|
T Consensus 209 ~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~V~En-~~gt~v~~v~A~D~D~ 255 (546)
T 1l3w_A 209 VEGKAIIQITDANDNAPIFDPKTYTA--------------------------------LVPEN-EIGFEVQRLSVTDLDM 255 (546)
T ss_dssp EECCEEEEEECCCCCCCCBSCSEEEE--------------------------------EEESS-SCCCEEEEECBCCCSC
T ss_pred eEEEEEEEEeecCCCCCccccccceE--------------------------------EEEeC-CCCCEEEEEEEEeCCC
Confidence 99999999999999999997776554 45566 666667777779999
Q ss_pred -CCCCeEEEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccCcEEEEEEEEEECCC---CCceEEEEEEEEEeeCCC
Q psy6838 322 -EGVNGVVTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK---PMMSSTVTVYFNVVDLND 393 (442)
Q Consensus 322 -~~~~~~i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~---~~~~~~~~v~I~V~dvNd 393 (442)
.+.|+.++|+|.+ +..++|.|+ ..+|.|++.++||||....|.|+|+|+|++. |+++++++|+|+|.|+||
T Consensus 256 ~~g~n~~v~y~i~~-~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND 334 (546)
T 1l3w_A 256 PGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE 334 (546)
T ss_dssp TTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC
T ss_pred CCCCCcEEEEEEEe-CCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC
Confidence 6788999999996 677899996 2689999999999999999999999999863 567899999999999999
Q ss_pred CCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCCCCC
Q psy6838 394 NPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDFDLL 442 (442)
Q Consensus 394 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~~~f 442 (442)
+|.|.+..|.+.|+|+++.|+.++++.|+|+|.+ .++|+|.++..++|
T Consensus 335 -~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i~ysi~~~~~~~F 385 (546)
T 1l3w_A 335 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWL 385 (546)
T ss_dssp -CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCC
T ss_pred -CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEECCCCCCcE
Confidence 9999988899999999999999999999999986 89999998877887
No 7
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=3.3e-59 Score=477.37 Aligned_cols=353 Identities=29% Similarity=0.397 Sum_probs=308.3
Q ss_pred EEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCC
Q psy6838 17 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE 96 (442)
Q Consensus 17 ~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~ 96 (442)
.++|+||.+ |.....+.+.+.|.+.|+.++|+|.++... ....+
T Consensus 6 ~~~v~En~~-g~~~~~i~~~~~D~~~n~~i~Ysi~~~~~~-----------------------------------~~~~~ 49 (559)
T 3q2w_A 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGAD-----------------------------------QPPTG 49 (559)
T ss_dssp CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESBTTT-----------------------------------BSSTT
T ss_pred cEEeeCCCC-CCCCeEEEEEeeCCCCCcEEEEEEECCCCC-----------------------------------CCCCc
Confidence 578999997 877777888888877677777777642110 01236
Q ss_pred cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCCcE
Q psy6838 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTV 175 (442)
Q Consensus 97 ~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g~~ 175 (442)
+|.|++.+|.|++.++||||+...|.|+|+|+|+++++ +++++.|.|+|.|+|||+|.|... |.+.|+|++++|+.
T Consensus 50 ~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~ 126 (559)
T 3q2w_A 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ---VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126 (559)
T ss_dssp SEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCE---EEEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCE
T ss_pred eEEEeCCceEEEECCccCCCCCceEEEEEEEEECCCCc---cceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcE
Confidence 89999999999999999999999999999999998764 688899999999999999999977 89999999999999
Q ss_pred EEEEEEEeCCCC--CCceEEEEEecCCC-----CCeEecCcceEEEEcc-cCCcccccEEEEEEEEEeCCC---CCCcee
Q psy6838 176 VAALKAIDRDEG--QNSYVEYSIINSEA-----TPFSLGPVDGLLRVAQ-KLDREIKSNYTLEIKAKDRGE---PSKSSR 244 (442)
Q Consensus 176 v~~v~a~D~D~~--~~~~~~y~i~~~~~-----~~F~id~~tG~i~~~~-~lD~e~~~~~~l~V~a~D~~~---~~~~~~ 244 (442)
++++.|+|+|.+ .|+.++|+|.++.. +.|.|++.+|.|++.+ .||||....|.|.|+|+|+++ ++++++
T Consensus 127 v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t 206 (559)
T 3q2w_A 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNT 206 (559)
T ss_dssp EEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEE
T ss_pred EEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccce
Confidence 999999999987 68899999987642 6899999999999987 999999999999999999865 458999
Q ss_pred EEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCC
Q psy6838 245 TKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV 324 (442)
Q Consensus 245 ~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~ 324 (442)
++|+|+|.|+|||+|.|....|.+.++ |+. +|+.++++.|+|+|.+.
T Consensus 207 ~~v~I~V~DvNDn~P~f~~~~y~~~V~--------------------------------En~-~g~~v~~v~a~D~D~~~ 253 (559)
T 3q2w_A 207 ATAVITVTDVNDNPPEFTAMTFYGEVP--------------------------------ENR-VDVIVANLTVTDKDQPH 253 (559)
T ss_dssp EEEEEEEECCSCSCCEESSSEEEEEEE--------------------------------SSC-SSEEEEEEEEECCSCTT
T ss_pred EEEEEEEEeCCCCCCccccccceeEec--------------------------------CCC-CCcEEEEEEEEcCCCCC
Confidence 999999999999999998877655544 554 56667777779999875
Q ss_pred --CeEEEEEEEeCCCCCCeEE----eCCccEEEEcccCCCccCcEEEEEEEEEECC------CCCceEEEEEEEEEeeCC
Q psy6838 325 --NGVVTYSVVSDWANDVFSI----NPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG------KPMMSSTVTVYFNVVDLN 392 (442)
Q Consensus 325 --~~~i~y~l~~~~~~~~f~i----d~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~------~~~~~~~~~v~I~V~dvN 392 (442)
++.++|+|..++..++|.| +..+|.|++.++||||....|.|+|+|+|++ .|+++++++|+|+|.|+|
T Consensus 254 ~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvN 333 (559)
T 3q2w_A 254 TPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVN 333 (559)
T ss_dssp STTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCC
T ss_pred CCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCC
Confidence 5679999998888899999 5789999999999999999999999999974 256899999999999999
Q ss_pred CCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCCCCC
Q psy6838 393 DNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDFDLL 442 (442)
Q Consensus 393 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~~~f 442 (442)
| +|.|.+..|.+.|+|+++.|+.++++.|+|+|.+ .++|+|.++..++|
T Consensus 334 D-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~~~~~~f 385 (559)
T 3q2w_A 334 E-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWL 385 (559)
T ss_dssp C-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEEEEEEECTTCCE
T ss_pred C-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceEEEEccCCccce
Confidence 9 7999998899999999999999999999999987 89999998777776
No 8
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-58 Score=457.06 Aligned_cols=340 Identities=26% Similarity=0.419 Sum_probs=297.0
Q ss_pred CcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCCcEEEeCCccE
Q psy6838 27 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGT 106 (442)
Q Consensus 27 g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~~F~i~~~~g~ 106 (442)
...+.+++|+|+|.|.|+.++|+|..+.....|.|++ ..++|.|+ .+|.
T Consensus 8 ~~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~I~~------------------------------~~~~f~v~-~tG~ 56 (419)
T 3ubh_A 8 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRD------------------------------DNPWVTVE-TNGA 56 (419)
T ss_dssp EEEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEEESS------------------------------CCSSEEEC-TTSE
T ss_pred ccceEEEEEEcccCCCCceEEEEEecCCCCceEEEcC------------------------------CCccEEEC-CCcE
Confidence 4678999999999999999999998876677788874 24689997 6999
Q ss_pred EEEcccCCcccC---cEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC---CeeEeeCCCCCCcEEEEEE
Q psy6838 107 LSNLKHLDRETK---SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAALK 180 (442)
Q Consensus 107 l~~~~~lD~E~~---~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~---~~~~v~E~~~~g~~v~~v~ 180 (442)
|++.++||||+. ..|.|.|+|+|.+.++...+++.++|.|+|.|+|||+|.|... |...|+|++++|+.|+++.
T Consensus 57 i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~ 136 (419)
T 3ubh_A 57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ 136 (419)
T ss_dssp EEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECC
T ss_pred EEECCccCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEE
Confidence 999999999997 7999999999987654434788899999999999999999876 5789999999999999999
Q ss_pred EEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCC----CCceeEEEEEEEEeCC
Q psy6838 181 AIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEP----SKSSRTKFFIRLLDEN 255 (442)
Q Consensus 181 a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~----~~~~~~~v~I~V~d~n 255 (442)
|+|+|.+.+ ++|+|..+. .++|.|++.+|.|++.+.||+|....|.|+|+|+|+|++ .+++++.++|.|.| |
T Consensus 137 A~D~D~g~n--~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-n 213 (419)
T 3ubh_A 137 ARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-G 213 (419)
T ss_dssp EECSSTTCC--EEEEEEEESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-S
T ss_pred EECCCCCce--eEEEEEeCCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-C
Confidence 999999887 899998765 579999999999999999999999999999999998764 45778889999999 9
Q ss_pred CCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEE-e
Q psy6838 256 DNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV-S 334 (442)
Q Consensus 256 d~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~-~ 334 (442)
||+|.|....|.+ .|.||.++|+.|+++.|.|+| ++.++|+|. .
T Consensus 214 dn~P~F~~~~y~~--------------------------------~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~ 258 (419)
T 3ubh_A 214 KRAPQFYMPSYEA--------------------------------EIPENQKKDSDIISIKAKSFA---DREIRYTLKAQ 258 (419)
T ss_dssp CCCCEESSSCEEE--------------------------------EEETTCCTTCEEEECCEECSS---CCCCEEEEEES
T ss_pred CCCCceecCeeEE--------------------------------EecCCCCCCcEEEEEEEecCC---CCceEEEEecC
Confidence 9999997776554 455666666777777779987 678999997 4
Q ss_pred CCCCCCeEEeCCccEEEEcccCCCccCc---EEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCCCee-EEecC
Q psy6838 335 DWANDVFSINPQSGIFTLTAKLDYEDVH---HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNI-PVYEN 410 (442)
Q Consensus 335 ~~~~~~f~id~~tG~l~~~~~ld~e~~~---~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~-~v~E~ 410 (442)
++..++|.|++.+|.|++.++||||... .|.|+|+|+|.+ ++++++++|+|+|.|+|||+|.|....|.. .|+|+
T Consensus 259 ~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~-~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~ 337 (419)
T 3ubh_A 259 GQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDED 337 (419)
T ss_dssp SSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTT-TSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETT
T ss_pred CCCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCC-CCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCC
Confidence 6677899999999999999999999865 799999999754 358899999999999999999999888886 79999
Q ss_pred CCCCceEEEEEEEeCCCC---eeEEEEee
Q psy6838 411 VTLGTGLASVHAVDLDSG---KLPFLLPI 436 (442)
Q Consensus 411 ~~~g~~v~~v~a~D~D~~---~~~y~i~~ 436 (442)
++.|+.++++.|+|+|.+ .++|+|.+
T Consensus 338 ~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~ 366 (419)
T 3ubh_A 338 IPLGTSILRVKAMDSDSGSNAEIEYLVSD 366 (419)
T ss_dssp CCTTCEEEECCEECSSCGGGGCEEEEESC
T ss_pred CCCCCEEEEEEEEeCCCCCCCEEEEEEcC
Confidence 999999999999999998 79999975
No 9
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=1.8e-56 Score=476.20 Aligned_cols=357 Identities=25% Similarity=0.360 Sum_probs=313.6
Q ss_pred CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCC----CCcEEEcCCccEEEEe-e
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWA----NDVFSINPQSGIFTLT-A 72 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~----~~~f~id~~tg~~~~~-~ 72 (442)
|.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.++.+ .++|.|++.||.|++. +
T Consensus 253 V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~ 332 (880)
T 1q55_A 253 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 332 (880)
T ss_dssp EECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSC
T ss_pred EEecCCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecc
Confidence 68999999999999999999999999999999999999998 68999999998763 5799999999999986 6
Q ss_pred eccccccc-------------------------------------------------------------------CCCcE
Q psy6838 73 KLDYEDVS-------------------------------------------------------------------DNGRL 85 (442)
Q Consensus 73 ~ld~~~~~-------------------------------------------------------------------~~~~i 85 (442)
.||||... .|+.+
T Consensus 333 ~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~gt~V~~v~A~D~D~~~g~n~~v 412 (880)
T 1q55_A 333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQA 412 (880)
T ss_dssp CCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESSSCCCEEEEECBCCCSCTTSTTSCE
T ss_pred cCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecCCCCcEEEEEEEECCCCCCCCCceE
Confidence 89998765 24578
Q ss_pred EEEEEeCCCCCcEEEe--C--CccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC
Q psy6838 86 EYSIVSGDDEEIFTIN--P--SNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA 161 (442)
Q Consensus 86 ~y~i~~~~~~~~F~i~--~--~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~ 161 (442)
+|+|.. +..+.|.|+ + .+|.|++.++||||....|.|+|+|+|+++.....++++++|+|+|.|+|| +|.|...
T Consensus 413 ~Ysi~~-~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~ 490 (880)
T 1q55_A 413 VYKIRV-NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPA 490 (880)
T ss_dssp ECCBSC-CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSC
T ss_pred EEEEec-CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecC
Confidence 999987 677899995 3 579999999999999999999999999875322236889999999999999 9999876
Q ss_pred -CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccc----cEEEEEEEEEeC
Q psy6838 162 -NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEIKAKDR 236 (442)
Q Consensus 162 -~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~----~~~~l~V~a~D~ 236 (442)
|.+.|.|+.++|+.|+++.|+|+|.+.++.++|+|.++..++|.|++.+|.|++.++||||.. ..|.|.|.|+|+
T Consensus 491 ~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~ 570 (880)
T 1q55_A 491 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDD 570 (880)
T ss_dssp EECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEEC
T ss_pred ceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECCCCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEEC
Confidence 889999999999999999999999999999999999877789999999999999999999987 899999999999
Q ss_pred CCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEE
Q psy6838 237 GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVF 316 (442)
Q Consensus 237 ~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~ 316 (442)
|.|+++++++|+|+|.|+|||+|.|... .. .|.|+.+.|+ + +.
T Consensus 571 g~p~~sst~tv~I~V~DvNDn~P~f~~~--~~--------------------------------~v~E~~~~g~-v--v~ 613 (880)
T 1q55_A 571 GVSVGTGTGTLILHVLDVNDNGPVPSPR--VF--------------------------------TMCDQNPEPQ-V--LT 613 (880)
T ss_dssp SSSCCCCCEEEECCBCCCCCSCCCBSCC--CE--------------------------------EECSSSCCCE-E--EE
T ss_pred CCCCcEeEEEEEEEEEeCCCCCCCccCc--ce--------------------------------EEecCCCCCe-E--EE
Confidence 9999999999999999999999999633 22 3556666665 2 77
Q ss_pred EEeCCCCCCeE-EEEEEEeCCCCCCeEE--eCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCC
Q psy6838 317 TTDADEGVNGV-VTYSVVSDWANDVFSI--NPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLND 393 (442)
Q Consensus 317 a~D~D~~~~~~-i~y~l~~~~~~~~f~i--d~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd 393 (442)
|+|+|.+.|+. ++|+|..+. ...|.| +..++.+.+. .+|+|....|.|.|+|+|+|. ++++++|+|+|+|+||
T Consensus 614 A~D~D~~~n~~~~~ysl~~~~-~~~f~i~~~g~~~~l~~~-~~d~~~~~~y~l~V~a~D~g~--lsst~tv~V~V~d~nd 689 (880)
T 1q55_A 614 ISDADIPPNTYPYKVSLSHGS-DLTWKAELDSKGTSMLLS-PTQQLKKGDYSIYVLLSDAQN--NPQLTVVNATVCSCEG 689 (880)
T ss_dssp BCCSSCTTTTCCCCCBCCSCS-SSSCBCCBCTTSSEEEEB-CSSCCCSSCBCCEEECCSSSC--CCEEEECCEEECSCSS
T ss_pred EecCCCCCCCceEEEEECCCC-CCCeEEEcccceeEEEec-cCccccCCEEEEEEEEEECCc--ceeeEEEEEEEEecCC
Confidence 89999998876 899998543 457877 4455677654 557999999999999999988 8999999999999999
Q ss_pred CCCccCC
Q psy6838 394 NPPLFDP 400 (442)
Q Consensus 394 ~~P~f~~ 400 (442)
++|.|..
T Consensus 690 ~~~~~~~ 696 (880)
T 1q55_A 690 KAIKCQE 696 (880)
T ss_dssp SCCCCC-
T ss_pred Ccccccc
Confidence 9998864
No 10
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-54 Score=427.61 Aligned_cols=308 Identities=28% Similarity=0.428 Sum_probs=268.2
Q ss_pred CCcCCCCCCccCCCe--EEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccc
Q psy6838 1 VSDTNDNSPVFSEPV--YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED 78 (442)
Q Consensus 1 V~DvNDn~P~f~~~~--~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~ 78 (442)
|.|+|||+|.|.... |.+.|+|++++|+.|+++.|+|+|.|.| ++|+|..
T Consensus 101 V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~-------------------------- 152 (419)
T 3ubh_A 101 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVR-------------------------- 152 (419)
T ss_dssp EECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEE--------------------------
T ss_pred EEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEe--------------------------
Confidence 679999999999887 7899999999999999999999998765 6666654
Q ss_pred ccCCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCC-CCCceeEEEEEEEEEeccCCCCe
Q psy6838 79 VSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP-QKRLSSTTQVSIVIRDVNDNAPE 157 (442)
Q Consensus 79 ~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~-~~~~s~~~~v~I~V~dvNd~~P~ 157 (442)
+...++|.|++.+|.|++.+.||+|....|.|+|+|+|++++. ..++++++.+.|.|.| |||+|.
T Consensus 153 -------------~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~ 218 (419)
T 3ubh_A 153 -------------DRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQ 218 (419)
T ss_dssp -------------ESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCE
T ss_pred -------------CCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCc
Confidence 3445677777788899998999999999999999999987642 1236788899999999 999999
Q ss_pred eccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEec-C-CCCCeEecCcceEEEEcccCCccccc---EEEEEE
Q psy6838 158 FITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN-S-EATPFSLGPVDGLLRVAQKLDREIKS---NYTLEI 231 (442)
Q Consensus 158 f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~-~-~~~~F~id~~tG~i~~~~~lD~e~~~---~~~l~V 231 (442)
|... |.+.|+|+.++|+.|+++.|+|+| ++.++|+|.. + ..++|.|++.+|.|++.++||||... .|.|.|
T Consensus 219 F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V 295 (419)
T 3ubh_A 219 FYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 295 (419)
T ss_dssp ESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEE
T ss_pred eecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCCCCCCcEEEECCCCEEEECcccCccccccccEEEEEE
Confidence 9866 899999999999999999999987 5569999973 3 36799999999999999999999875 799999
Q ss_pred EEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcE
Q psy6838 232 KAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSR 311 (442)
Q Consensus 232 ~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~ 311 (442)
.|+|.++ ++++.+.|+|.|.|+|||+|.|....|.. ..|.|+.++|+.
T Consensus 296 ~a~dd~~-~~s~~~~v~I~V~DvNDn~P~f~~~~~~~-------------------------------~~v~E~~~~gt~ 343 (419)
T 3ubh_A 296 TATEDSG-GFSTSVDLTIRVTDVNDNAPKFELPDYQA-------------------------------HNVDEDIPLGTS 343 (419)
T ss_dssp EEECTTT-SCEEEEEEEEEEECCCCCCCEESSSEEEE-------------------------------EEEETTCCTTCE
T ss_pred EEEeCCC-CcEEEEEEEEEEEccCCCCCcccCCccee-------------------------------EEecCCCCCCCE
Confidence 9997543 68899999999999999999998766542 146677777888
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCcc-CcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED-VHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 312 v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~-~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d 390 (442)
|+++.|+|+|.|.|+.++|+|.. ++|.|++ +|.|++.+.||||. ...|.|+|+|+|+|.|+++++++|+|+|.|
T Consensus 344 v~~v~A~D~D~g~n~~v~Y~i~~----~~F~Id~-~G~i~~~~~ld~E~~~~~y~l~V~a~D~G~p~~sst~~v~I~v~n 418 (419)
T 3ubh_A 344 ILRVKAMDSDSGSNAEIEYLVSD----DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418 (419)
T ss_dssp EEECCEECSSCGGGGCEEEEESC----TTEEECT-TCEEEECSCSSSSCTTCEEEEEEEEEECCSSCCEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCCCCCEEEEEEcC----CcEEECC-CeEEEECcccCcccCCceEEEEEEEEECCcCCceeEEEEEEEEec
Confidence 88888899999999999999973 4899998 89999999999998 679999999999999999999999999986
No 11
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=1.6e-52 Score=398.46 Aligned_cols=297 Identities=24% Similarity=0.392 Sum_probs=248.1
Q ss_pred CcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCCcEEEeCCccE
Q psy6838 27 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGT 106 (442)
Q Consensus 27 g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~~F~i~~~~g~ 106 (442)
...+.++.|+|+|.|++|++.|+|..+ +..+.|+|..+. .+|.|++ +|.
T Consensus 3 ~~p~~~~~atd~D~g~ng~v~y~l~~~----------------------------~~~~~f~i~~~~--~~F~i~~-tG~ 51 (316)
T 3ubf_A 3 VRPTKRIEFTEADGDTEGKSVFQLEKE----------------------------TDKETFKIRDDN--PWVTVET-NGA 51 (316)
T ss_dssp EEEEEEEEEESGGGCSTTCEEEECCCS----------------------------STTCEEEESSCC--SSEEECT-TSE
T ss_pred cCceEEEEEEecCCCCCceEEEEEEcC----------------------------CCcceEEEeCCC--CeEEECC-CeE
Confidence 356889999999999999999999874 335566666443 5899998 999
Q ss_pred EEEcccCCccc-----CcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC---CeeEeeCCCCCCcEEEE
Q psy6838 107 LSNLKHLDRET-----KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAA 178 (442)
Q Consensus 107 l~~~~~lD~E~-----~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~---~~~~v~E~~~~g~~v~~ 178 (442)
|++.++||||. ...|.|+|+|.|++.++ +++++++|.|.|.|+|||+|.|... |.+.|+|++++|+.|++
T Consensus 52 l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~--~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~ 129 (316)
T 3ubf_A 52 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGI--KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFT 129 (316)
T ss_dssp EEESSCCCGGGSCTTCEEEEEEEEEC---------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEE
T ss_pred EEECCccChhhcccccceEEEEEEEEcCCCCCC--cccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEE
Confidence 99999999998 45788999999887542 2689999999999999999999876 68999999999999999
Q ss_pred EEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC----CCCceeEEEEEEEEe
Q psy6838 179 LKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE----PSKSSRTKFFIRLLD 253 (442)
Q Consensus 179 v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~----~~~~~~~~v~I~V~d 253 (442)
+.|+|+|.+.+ ++|+|..+. .++|.|++.+|.|++.++||||....|.|.|+|+|+|+ +.+++++.++|.|.|
T Consensus 130 v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d 207 (316)
T 3ubf_A 130 LQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG 207 (316)
T ss_dssp CCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE
T ss_pred EEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc
Confidence 99999999887 999998653 67999999999999999999999999999999999985 457888899999999
Q ss_pred CCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEE
Q psy6838 254 ENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV 333 (442)
Q Consensus 254 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~ 333 (442)
|||+|.|....|.+ .|.|+.++|+.|+++.|+|+| ++.++|+|.
T Consensus 208 -nDn~P~F~~~~y~~--------------------------------~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~ 251 (316)
T 3ubf_A 208 -GKRAPQFYMPSYEA--------------------------------EIPENQKKDSDIISIKAKSFA---DREIRYTLK 251 (316)
T ss_dssp -SCCCCEESSSSEEE--------------------------------EEETTCCTTCEEEECCEECTT---CCCEEEEEE
T ss_pred -CCCCCEEcCCCceE--------------------------------EEeCCCCCCCEEEEEEEEeCC---CCEEEEEEE
Confidence 99999997776554 455666667777777779998 678999998
Q ss_pred -eCCCCCCeEEeCCccEEEEcccCCCccC---cEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCC
Q psy6838 334 -SDWANDVFSINPQSGIFTLTAKLDYEDV---HHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNP 395 (442)
Q Consensus 334 -~~~~~~~f~id~~tG~l~~~~~ld~e~~---~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~ 395 (442)
.++..++|.|++.+|.|++.++||||.. ..|.|+|+|+|.++ +++++++|+|+|.|+||||
T Consensus 252 ~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~g-~~~~~~~v~I~V~DvNDn~ 316 (316)
T 3ubf_A 252 AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA 316 (316)
T ss_dssp EESSCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEEEESSS-SCEEEEEEEEEEECC----
T ss_pred cCCCCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEEEEECCC-CCEEEEEEEEEEEecCCCC
Confidence 5777899999999999999999999998 79999999995433 4899999999999999986
No 12
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=7e-54 Score=407.08 Aligned_cols=297 Identities=34% Similarity=0.538 Sum_probs=258.1
Q ss_pred EEEEecC--CCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838 17 AFDVLED--LPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD 94 (442)
Q Consensus 17 ~~~v~E~--~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~ 94 (442)
.+.|.|+ .+.|+.|+++. +|+|.| ++.++|+|.. ++.
T Consensus 6 ~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~---------------------------------------~~~ 44 (322)
T 2a62_A 6 QMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSG---------------------------------------DGA 44 (322)
T ss_dssp CEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEE---------------------------------------TTB
T ss_pred eeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEEC---------------------------------------CCC
Confidence 5789999 88999999985 899987 5667777654 233
Q ss_pred CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838 95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN 173 (442)
Q Consensus 95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g 173 (442)
.++|.|++.+|.|++.++||||....|.|+|+|+|.++++ ++++.++|.|.|.|+|||+|.|... |.+.|+|++++|
T Consensus 45 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g 122 (322)
T 2a62_A 45 GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK--PLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122 (322)
T ss_dssp TTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTTCS--EEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTT
T ss_pred CCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCCCC--cccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCC
Confidence 4678888889999999999999999999999999987532 2678899999999999999999986 899999999999
Q ss_pred cEEEEEEEEeCCC---CCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCCC--CceeEEE
Q psy6838 174 TVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPS--KSSRTKF 247 (442)
Q Consensus 174 ~~v~~v~a~D~D~---~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~~--~~~~~~v 247 (442)
+.|+++.|+|+|. |.|+.++|+|.++. .+|.|++.+|.|++. +.||||....|.|.|+|+|+|.|+ ++++++|
T Consensus 123 t~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~-~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v 201 (322)
T 2a62_A 123 TSVTNVTATDADDPVYGNSAKLVYSILEGQ-PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTL 201 (322)
T ss_dssp CBCCCCCCCBCSCSSSTTSSCEEEEEEECT-TTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEE
T ss_pred CEEEEEEEEeCCCCCCCccEEEEEEEccCC-CCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEE
Confidence 9999999999996 77889999999875 689999999999998 899999999999999999999874 8899999
Q ss_pred EEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeE
Q psy6838 248 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV 327 (442)
Q Consensus 248 ~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~ 327 (442)
+|.|.|+|||+|.|....|. +.|.|+.+.|+.|+++.|+|+|.+.|+.
T Consensus 202 ~I~V~DvNDn~P~F~~~~y~--------------------------------~~v~En~~~gt~v~~v~A~D~D~g~n~~ 249 (322)
T 2a62_A 202 TVTLTDVNDNPPKFAQSLYH--------------------------------FSVPEDVVLGTAIGRVKANDQDIGENAQ 249 (322)
T ss_dssp EEEECCCCCCCCCCSCSEEE--------------------------------EEECSCCSSCCEEEEEECCCSSCGGGTC
T ss_pred EEEEEecCCCCCeecCCCce--------------------------------eEeECCCCCCcEEEEEEEEeCCCCCCce
Confidence 99999999999998776654 4555666677777777789999999999
Q ss_pred EEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccCcEEEEEEEEEECCCCC-------ceEEEEEEEEEe
Q psy6838 328 VTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM-------MSSTVTVYFNVV 389 (442)
Q Consensus 328 i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~-------~~~~~~v~I~V~ 389 (442)
++|+|..++..++|.|+ ..+|.|+++++||||....|.|+|+|+|.|.|+ ++++++|.|+|.
T Consensus 250 i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~g~pp~~~~~~~~s~~~~V~I~V~ 322 (322)
T 2a62_A 250 SSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE 322 (322)
T ss_dssp CEEEEC---CCSSBCCBCCTTTSEEEEEBCSCCCCSSCCEEEEEEEEECCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred EEEEEECCCCCCcEEEeccCCCceEEEEECCcCCcccCCeEEEEEEEEECCCCCccccCCCcccEEEEEEEEC
Confidence 99999887778899999 468999999999999999999999999998775 457888888874
No 13
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=7.7e-45 Score=344.97 Aligned_cols=245 Identities=33% Similarity=0.497 Sum_probs=214.1
Q ss_pred CeeEeeCC--CCCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838 162 NETTIPEN--SPLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238 (442)
Q Consensus 162 ~~~~v~E~--~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~ 238 (442)
..+.|.|+ .+.|+.|+++. +|+|.+ ++.++|+|.++. ...|.|++.+|.|++.++||||....|.|.|+|+|++.
T Consensus 5 ~~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~ 82 (322)
T 2a62_A 5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET 82 (322)
T ss_dssp CCEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEETTBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTT
T ss_pred ceeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEECCCCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCC
Confidence 35788999 88999999986 899987 577999998765 46899999999999999999999999999999999875
Q ss_pred -CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838 239 -PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317 (442)
Q Consensus 239 -~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a 317 (442)
+++++.+.|+|.|.|+|||+|.|....|.+. |.|++++|+.++++.|
T Consensus 83 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~--------------------------------v~E~~~~gt~v~~v~A 130 (322)
T 2a62_A 83 NKPLEPPSEFIIKVQDINDNAPEFLNGPYHAT--------------------------------VPEMSILGTSVTNVTA 130 (322)
T ss_dssp CSEEEEEEEECEECCCCSCSCBCCSSSEEEEE--------------------------------ECSSCCTTCBCCCCCC
T ss_pred CCcccceEEEEEEEEecCCCCCccCCCceEEE--------------------------------EeCCCCCCCEEEEEEE
Confidence 4577889999999999999999977765554 4555566666666677
Q ss_pred EeCCC---CCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCCC--ceEEEEEEEEEeeC
Q psy6838 318 TDADE---GVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVVDL 391 (442)
Q Consensus 318 ~D~D~---~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~~--~~~~~~v~I~V~dv 391 (442)
+|+|. |.|+.++|+|..+ ..+|.|++.+|.|++. +.||||....|.|+|+|+|+|.|+ ++++++|+|+|.|+
T Consensus 131 ~D~D~~~~G~n~~i~Y~i~~~--~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~Dv 208 (322)
T 2a62_A 131 TDADDPVYGNSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV 208 (322)
T ss_dssp CBCSCSSSTTSSCEEEEEEEC--TTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCC
T ss_pred EeCCCCCCCccEEEEEEEccC--CCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEec
Confidence 99996 7788999999865 4689999999999998 899999999999999999999874 88999999999999
Q ss_pred CCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCC-CCC
Q psy6838 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDF-DLL 442 (442)
Q Consensus 392 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~-~~f 442 (442)
|||+|.|.+..|.+.|.|+++.|+.++++.|+|+|.+ .++|+|..|+. ++|
T Consensus 209 NDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F 263 (322)
T 2a62_A 209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALF 263 (322)
T ss_dssp CCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSB
T ss_pred CCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcE
Confidence 9999999998999999999999999999999999997 89999988765 565
No 14
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=100.00 E-value=3.9e-41 Score=300.78 Aligned_cols=205 Identities=30% Similarity=0.484 Sum_probs=185.1
Q ss_pred CCCCCccCCCeEE--EEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCC
Q psy6838 5 NDNSPVFSEPVYA--FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDN 82 (442)
Q Consensus 5 NDn~P~f~~~~~~--~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~ 82 (442)
-||+|.|....|. ++|+|++++|+.|+++.|+|+|. +.++|+|..
T Consensus 2 vn~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~------------------------------ 48 (210)
T 3mvs_A 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSG------------------------------ 48 (210)
T ss_dssp CCCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEES------------------------------
T ss_pred CCCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeC------------------------------
Confidence 3679999999986 69999999999999999999994 346666643
Q ss_pred CcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-
Q psy6838 83 GRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA- 161 (442)
Q Consensus 83 ~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~- 161 (442)
++..++|.|++.+|.|++.++||||....|.|+|+|+|+++ ..+++|.|+|.|+|||+|.|...
T Consensus 49 ---------~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~D~~~------~~~~~v~I~V~DvNDn~P~f~~~~ 113 (210)
T 3mvs_A 49 ---------EEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG------VITRKVNIQVGDVNDNAPTFHNQP 113 (210)
T ss_dssp ---------HHHHHHEEECTTTCEEEESSCCCTTTCCEEEEEEEEECSSC------EEEEEEEEEEECCCCCCCEECSCS
T ss_pred ---------CCCCCcEEEeCCCCEEEECCccCCcccceEEEEEEEEeCCC------CEEEEEEEEEEeCCCCCCcCCCce
Confidence 33346788888899999999999999999999999999875 46789999999999999999876
Q ss_pred CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC-CCC
Q psy6838 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-EPS 240 (442)
Q Consensus 162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~-~~~ 240 (442)
|.+.|+|+.++|+.|+++.|+|+|.|.++.++|+|..+. ++|.|++.+|.|++.++||||....|.|.|+|+|+| .++
T Consensus 114 y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~~~-~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~ 192 (210)
T 3mvs_A 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP 192 (210)
T ss_dssp EEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESSCC-SSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSC
T ss_pred EEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeCCC-CCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCC
Confidence 899999999999999999999999999999999998765 689999999999999999999999999999999998 467
Q ss_pred CceeEEEEEEEEeCCCCC
Q psy6838 241 KSSRTKFFIRLLDENDNN 258 (442)
Q Consensus 241 ~~~~~~v~I~V~d~nd~~ 258 (442)
++++++|+|.|.|+||||
T Consensus 193 ~s~~~~v~I~V~DvND~~ 210 (210)
T 3mvs_A 193 LSTLANLAIIITDMQDMD 210 (210)
T ss_dssp CEEEEEEEEEEECCCCCC
T ss_pred CEEEEEEEEEEEccCCCC
Confidence 999999999999999975
No 15
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-42 Score=313.66 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=184.3
Q ss_pred ccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEE
Q psy6838 10 VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSI 89 (442)
Q Consensus 10 ~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i 89 (442)
.|.+..|.++|+|++++|+.|+++.|+|+|.|. .+.|+|..+ .--.|+|
T Consensus 2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~--~~~~~i~~~-----------------------------~~~~y~i 50 (246)
T 2x2u_A 2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEE--VPSFRLGQH-----------------------------LYGTYRT 50 (246)
T ss_dssp EESCSEEEEEEETTBCTTCEEEECCEECSSTTC--CCCCEECSE-----------------------------EECGGGC
T ss_pred CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCC--cceEEEeec-----------------------------cccceec
Confidence 589999999999999999999999999999854 234444210 0001333
Q ss_pred EeCCCCCcEEEeCCccEEEEcccCCcccCcEE------------EEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCe
Q psy6838 90 VSGDDEEIFTINPSNGTLSNLKHLDRETKSSY------------NLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE 157 (442)
Q Consensus 90 ~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~------------~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~ 157 (442)
..+ ..++|.|++.+|.|++.++||||....| .|+|.|+|++.+. ..++++++|.|+|.|+|||+|+
T Consensus 51 ~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~-~~~~~~~~v~I~V~DvNDn~P~ 128 (246)
T 2x2u_A 51 RLH-ENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLRE-GECQWPGCARVYFSFFNTSFPA 128 (246)
T ss_dssp EEE-ECCSEEECTTTCEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC--------CCCTTTEEEEEEEEESSCCCC
T ss_pred cCC-CCCEEEECCCcEEEEECCcCChhHhhhhccccCCCcccceEEEEEEEcCCCCC-CcccceEEEEEEEEECCCCCCc
Confidence 322 3568999989999999999999999999 9999999998762 1257888999999999999999
Q ss_pred ----------eccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccE
Q psy6838 158 ----------FITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSN 226 (442)
Q Consensus 158 ----------f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~ 226 (442)
|... |.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.++...+|.|++.+|.|++.++||||....
T Consensus 129 ~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~ 208 (246)
T 2x2u_A 129 CSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREK 208 (246)
T ss_dssp GGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSE
T ss_pred cccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccce
Confidence 9876 99999999999999999999999999999999999988778999999999999999999999999
Q ss_pred EEEEEEEEe-CCCCCCceeEEEEEEEEeCCCCCCeee
Q psy6838 227 YTLEIKAKD-RGEPSKSSRTKFFIRLLDENDNNPIFD 262 (442)
Q Consensus 227 ~~l~V~a~D-~~~~~~~~~~~v~I~V~d~nd~~P~f~ 262 (442)
|.|.|+|+| .|+|+++++++|+|.|.|+|||+|.|.
T Consensus 209 y~l~V~A~d~dg~p~~ss~~~v~I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 209 YELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245 (246)
T ss_dssp EEEEEEEEEC---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred EEEEEEEEecCCCCcceEEEEEEEEEEEeCCCCCccC
Confidence 999999998 566889999999999999999999984
No 16
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=5e-40 Score=312.38 Aligned_cols=234 Identities=18% Similarity=0.246 Sum_probs=190.7
Q ss_pred EEEEEEEEeCCCCCCceEEEEEecCC----------CCCeEecCcceEEEEcccCCccc-----ccEEEEEEEEEeCCCC
Q psy6838 175 VVAALKAIDRDEGQNSYVEYSIINSE----------ATPFSLGPVDGLLRVAQKLDREI-----KSNYTLEIKAKDRGEP 239 (442)
Q Consensus 175 ~v~~v~a~D~D~~~~~~~~y~i~~~~----------~~~F~id~~tG~i~~~~~lD~e~-----~~~~~l~V~a~D~~~~ 239 (442)
.+.++.|+|+|.++++.+.|+|..++ ..+|.|++ +|.|++.++||||. ...|.|.|+|.|++.|
T Consensus 5 p~~~~~atd~D~g~ng~v~y~l~~~~~~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~ 83 (316)
T 3ubf_A 5 PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAG 83 (316)
T ss_dssp EEEEEEEESGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEEEC------
T ss_pred ceEEEEEEecCCCCCceEEEEEEcCCCcceEEEeCCCCeEEECC-CeEEEECCccChhhcccccceEEEEEEEEcCCCCC
Confidence 45556666666655555555554432 25799999 99999999999998 4578999999998866
Q ss_pred -CCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEE
Q psy6838 240 -SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTT 318 (442)
Q Consensus 240 -~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~ 318 (442)
++++.++|+|.|.|+|||+|.|....+ .|.+.|.|++++|+.|+++.|+
T Consensus 84 ~~~s~~~~v~I~V~DvNDn~P~F~~~~~------------------------------~y~~~v~En~~~gt~v~~v~A~ 133 (316)
T 3ubf_A 84 IKYTDNQRVIILVKDVNDEPPYFINRPL------------------------------PMQAVVQLNAPPNTPVFTLQAR 133 (316)
T ss_dssp -CCCEEEEEEEEEECTTCCCCEECCSSS------------------------------SEEEEECTTCCTTCEEEECCEE
T ss_pred CcccceEEEEEEEEECCCCCCccCCCCC------------------------------CEEEEEeCCCCCCCEEEEEEEE
Confidence 578999999999999999999976541 1345566777778888888889
Q ss_pred eCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC----CCceEEEEEEEEEeeCCCC
Q psy6838 319 DADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK----PMMSSTVTVYFNVVDLNDN 394 (442)
Q Consensus 319 D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~----~~~~~~~~v~I~V~dvNd~ 394 (442)
|+|.+.+ ++|+|..++..++|.|++.+|.|++.++||||....|.|+|+|+|+|+ |+++++++++|+|.| |||
T Consensus 134 D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn 210 (316)
T 3ubf_A 134 DPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKR 210 (316)
T ss_dssp CSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCC
T ss_pred CCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCC
Confidence 9999876 999999777788999999999999999999999999999999999885 457888999999999 999
Q ss_pred CCccCCCCCeeEEecCCCCCceEEEEEEEeCCCCeeEEEEe-eCC-CCCC
Q psy6838 395 PPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLP-IGD-FDLL 442 (442)
Q Consensus 395 ~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~y~i~-~~~-~~~f 442 (442)
+|.|.+..|.+.|.|+++.|+.++++.|+|+|.+.++|+|. .++ .++|
T Consensus 211 ~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~Dn~~i~Y~i~~~~~~~~~F 260 (316)
T 3ubf_A 211 APQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTF 260 (316)
T ss_dssp CCEESSSSEEEEEETTCCTTCEEEECCEECTTCCCEEEEEEEESSCTTTE
T ss_pred CCEEcCCCceEEEeCCCCCCCEEEEEEEEeCCCCEEEEEEEcCCCCCCeE
Confidence 99999999999999999999999999999999889999997 454 3565
No 17
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=100.00 E-value=1.7e-39 Score=290.25 Aligned_cols=201 Identities=32% Similarity=0.558 Sum_probs=173.2
Q ss_pred EEEEEecCC--CCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCC
Q psy6838 16 YAFDVLEDL--PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD 93 (442)
Q Consensus 16 ~~~~v~E~~--~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~ 93 (442)
+.+.|.|+. +.|+.|+++ |+|+|.| ++.++|+|..+ +
T Consensus 6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~---------------------------------------~ 44 (215)
T 2a4e_A 6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGE---------------------------------------G 44 (215)
T ss_dssp CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEET---------------------------------------T
T ss_pred eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECC---------------------------------------C
Confidence 478999994 578999988 8999987 67788877652 2
Q ss_pred CCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCC
Q psy6838 94 DEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPL 172 (442)
Q Consensus 94 ~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~ 172 (442)
...+|.|++.+|.|++.++||||....|.|+|+|+|+++++ ++++++.|.|+|.|+|||+|.|... |.+.|+|++++
T Consensus 45 ~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~ 122 (215)
T 2a4e_A 45 AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNR--PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNV 122 (215)
T ss_dssp BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCC--EEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCT
T ss_pred CCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCCCC--cccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCC
Confidence 34578888889999999999999999999999999987532 2688999999999999999999976 89999999999
Q ss_pred CcEEEEEEEEeCCC---CCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCC--CCceeEE
Q psy6838 173 NTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEP--SKSSRTK 246 (442)
Q Consensus 173 g~~v~~v~a~D~D~---~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~--~~~~~~~ 246 (442)
|+.|+++.|+|+|. |.|+.++|+|.++. ..|.|++.+|.|+++ ++||||....|.|.|+|+|+|.| +++++++
T Consensus 123 Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~-~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~ 201 (215)
T 2a4e_A 123 GTSVIQVTASDADDPTYGNSAKLVYSILEGQ-PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTK 201 (215)
T ss_dssp TCEEEECCEECSSCTTTCSSSCCEEEEEEST-TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEE
T ss_pred CCEEEEEEEEECCCCCCCCceEEEEEEeCCC-CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEE
Confidence 99999999999997 78889999999875 689999999999999 99999999999999999999976 5899999
Q ss_pred EEEEEEeCCCCCCe
Q psy6838 247 FFIRLLDENDNNPI 260 (442)
Q Consensus 247 v~I~V~d~nd~~P~ 260 (442)
|+|.|.|+|||+|.
T Consensus 202 v~I~V~DvNDn~P~ 215 (215)
T 2a4e_A 202 VTITLTDDYKDDDK 215 (215)
T ss_dssp EEEEEEC-------
T ss_pred EEEEEEECCCCCCC
Confidence 99999999999994
No 18
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=100.00 E-value=2.6e-39 Score=289.03 Aligned_cols=200 Identities=30% Similarity=0.441 Sum_probs=170.8
Q ss_pred CeeEeeCCC--CCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838 162 NETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238 (442)
Q Consensus 162 ~~~~v~E~~--~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~ 238 (442)
+.+.|.|+. |.|+.|+++ |+|+|.+ ++.++|+|.++. ..+|.|++.+|.|++.++||||....|.|.|+|+|++.
T Consensus 6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~ 83 (215)
T 2a4e_A 6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDT 83 (215)
T ss_dssp CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCC
Confidence 567899994 579999988 8999998 678999999775 46899999999999999999999999999999999875
Q ss_pred -CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838 239 -PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317 (442)
Q Consensus 239 -~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a 317 (442)
+++++.+.|+|.|.|+|||+|.|....|.+ .|.|+++.|+.|+++.|
T Consensus 84 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~v~E~~~~Gt~v~~v~A 131 (215)
T 2a4e_A 84 NRPLEPPSEFIVKVQDINDNPPEFLHEIYHA--------------------------------NVPERSNVGTSVIQVTA 131 (215)
T ss_dssp CCEEEEEEEEEEEEECCCCCCCEESSSSEEE--------------------------------EEETTCCTTCEEEECCE
T ss_pred CCcccccEEEEEEEeeCCCCCCCccCCceEE--------------------------------EEECCCCCCCEEEEEEE
Confidence 567889999999999999999998766554 45566667777777777
Q ss_pred EeCCC---CCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCC--CceEEEEEEEEEeeC
Q psy6838 318 TDADE---GVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKP--MMSSTVTVYFNVVDL 391 (442)
Q Consensus 318 ~D~D~---~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~--~~~~~~~v~I~V~dv 391 (442)
+|+|. |.|+.++|+|.++ ...|.|++.+|.|+++ +.||||....|.|+|+|+|+|.| +++++++|+|+|.|+
T Consensus 132 ~D~D~~~~G~n~~i~Y~i~~~--~~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~Dv 209 (215)
T 2a4e_A 132 SDADDPTYGNSAKLVYSILEG--QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209 (215)
T ss_dssp ECSSCTTTCSSSCCEEEEEES--TTTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC-
T ss_pred EECCCCCCCCceEEEEEEeCC--CCcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEEC
Confidence 99997 7889999999976 3689999999999999 99999999999999999999876 589999999999999
Q ss_pred CCCCCc
Q psy6838 392 NDNPPL 397 (442)
Q Consensus 392 Nd~~P~ 397 (442)
|||+|.
T Consensus 210 NDn~P~ 215 (215)
T 2a4e_A 210 YKDDDK 215 (215)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999995
No 19
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=308.74 Aligned_cols=220 Identities=17% Similarity=0.093 Sum_probs=179.7
Q ss_pred eeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCC--CceEE------EEEecCCCCCeEecCcceEEEEcccCCcccccEE
Q psy6838 157 EFITA-NETTIPENSPLNTVVAALKAIDRDEGQ--NSYVE------YSIINSEATPFSLGPVDGLLRVAQKLDREIKSNY 227 (442)
Q Consensus 157 ~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~--~~~~~------y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~ 227 (442)
.|.+. |.+.|+|++++|+.|+++.|+|+|.+. +..+. |++..+...+|.|++.+|.|++.++||||....|
T Consensus 2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y 81 (246)
T 2x2u_A 2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKL 81 (246)
T ss_dssp EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHHH
T ss_pred CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhhh
Confidence 36555 899999999999999999999999854 33444 5544444578999999999999999999999999
Q ss_pred ------------EEEEEEEeCCCC--CCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCcc
Q psy6838 228 ------------TLEIKAKDRGEP--SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVF 293 (442)
Q Consensus 228 ------------~l~V~a~D~~~~--~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~ 293 (442)
.|+|.|+|+|.+ +++++++|.|.|.|+|||+|.|...... + -.|
T Consensus 82 ~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~----~------------------~~F 139 (246)
T 2x2u_A 82 SVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPR----E------------------LCF 139 (246)
T ss_dssp HHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHH----H------------------HHS
T ss_pred ccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCcccccccc----c------------------ccc
Confidence 999999999987 6788999999999999999993221100 0 013
Q ss_pred CCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE-
Q psy6838 294 SEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD- 372 (442)
Q Consensus 294 ~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D- 372 (442)
....|.+.|.|+.++|+.|+++.|+|+|.|.|+.++|+|.+++ ..+|.|++.+|.|++.+.||||....|.|+|+|+|
T Consensus 140 ~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~ 218 (246)
T 2x2u_A 140 PETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVH 218 (246)
T ss_dssp CSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT-TSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC
T ss_pred CCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC-CCCEEEECCcCEEEeCCccCccccceEEEEEEEEec
Confidence 4445666777777888888888889999999999999999654 78999999999999999999999999999999998
Q ss_pred CCCCCceEEEEEEEEEeeCCCCCCccC
Q psy6838 373 TGKPMMSSTVTVYFNVVDLNDNPPLFD 399 (442)
Q Consensus 373 ~~~~~~~~~~~v~I~V~dvNd~~P~f~ 399 (442)
.|+|+++++++|.|+|.|+|||+|.|.
T Consensus 219 dg~p~~ss~~~v~I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 219 AGAREEVVMVPFPVTVYDEDDSAPEFE 245 (246)
T ss_dssp ---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred CCCCcceEEEEEEEEEEEeCCCCCccC
Confidence 666889999999999999999999995
No 20
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=100.00 E-value=3.8e-39 Score=287.89 Aligned_cols=203 Identities=31% Similarity=0.471 Sum_probs=179.6
Q ss_pred CCCCeeccC-Ce--eEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEE
Q psy6838 153 DNAPEFITA-NE--TTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYT 228 (442)
Q Consensus 153 d~~P~f~~~-~~--~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~ 228 (442)
|++|.|... |. +.|+|++++|+.|+++.|+|+|.+ .++|+|.++. .++|.|++.+|.|++.++||||....|.
T Consensus 3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~---~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~ 79 (210)
T 3mvs_A 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFT 79 (210)
T ss_dssp CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCC---CCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCEEE
T ss_pred CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCC---cEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccceEE
Confidence 469999877 43 699999999999999999999964 3899998765 4689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCC
Q psy6838 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPR 308 (442)
Q Consensus 229 l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~ 308 (442)
|.|.|+|+++ ..++.++|.|.|+|||+|.|....|. +.|.|+.+.
T Consensus 80 l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~--------------------------------~~v~E~~~~ 124 (210)
T 3mvs_A 80 VEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYS--------------------------------VRIPENTPV 124 (210)
T ss_dssp EEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEE--------------------------------EEEETTCCT
T ss_pred EEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEE--------------------------------EEEECCCCC
Confidence 9999999864 46789999999999999999777654 445566667
Q ss_pred CcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECC-CCCceEEEEEEEE
Q psy6838 309 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG-KPMMSSTVTVYFN 387 (442)
Q Consensus 309 g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~-~~~~~~~~~v~I~ 387 (442)
|+.++++.|+|+|.|.|+.++|+|.. ..++|.|++.+|.|++.++||||....|.|+|+|+|+| .|+++++++++|+
T Consensus 125 gt~v~~v~A~D~D~g~n~~v~Y~i~~--~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~ 202 (210)
T 3mvs_A 125 GTPIFIVNATDPDLGAGGSVLYSFQP--PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAII 202 (210)
T ss_dssp TCEEEECCEECCSSGGGGCEEEEESS--CCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEE
T ss_pred CCEEEEEEEEeCCCCCCceEEEEEeC--CCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEE
Confidence 77777777799999999999999974 35799999999999999999999999999999999998 4679999999999
Q ss_pred EeeCCCCC
Q psy6838 388 VVDLNDNP 395 (442)
Q Consensus 388 V~dvNd~~ 395 (442)
|.|+||+|
T Consensus 203 V~DvND~~ 210 (210)
T 3mvs_A 203 ITDMQDMD 210 (210)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99999975
No 21
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=100.00 E-value=7.3e-37 Score=273.61 Aligned_cols=195 Identities=31% Similarity=0.471 Sum_probs=174.1
Q ss_pred eeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC
Q psy6838 163 ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG 237 (442)
Q Consensus 163 ~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~ 237 (442)
.++|+||++ |+.++++.+.|.|.+.++.++|+|.++. .+.|.|++.+|.|++.++||||....|.|+|+|+|+|
T Consensus 6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g 84 (215)
T 2qvi_A 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN 84 (215)
T ss_dssp CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence 678999998 8888899999999988999999999763 4689999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838 238 EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317 (442)
Q Consensus 238 ~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a 317 (442)
.+++++.+.|+|.|.|+|||+|.|....|.+. |.|+++.|+.|+++.|
T Consensus 85 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~--------------------------------v~En~~~gt~v~~v~A 132 (215)
T 2qvi_A 85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGS--------------------------------VPEGSKPGTYVMTVTA 132 (215)
T ss_dssp TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEE--------------------------------ECSSCCTTCEEEECCC
T ss_pred CCceeeeEEEEEEEeECCCCCCcccCceeEEE--------------------------------EeCCCCCCCEEEEEEE
Confidence 99999999999999999999999987765544 5555666666677777
Q ss_pred EeCCC--CCCeEEEEEEEeCC----CCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCC---CceEEEEEEEE
Q psy6838 318 TDADE--GVNGVVTYSVVSDW----ANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKP---MMSSTVTVYFN 387 (442)
Q Consensus 318 ~D~D~--~~~~~i~y~l~~~~----~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~---~~~~~~~v~I~ 387 (442)
+|+|. +.|+.++|+|..++ ..+.|.|++.+|.|++. +.||||....|.|.|+|+|+|+| +++++++|+|+
T Consensus 133 ~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~ 212 (215)
T 2qvi_A 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVIT 212 (215)
T ss_dssp BCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEE
T ss_pred EeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEE
Confidence 99998 78999999999775 46899999999999995 79999999999999999999887 78999999999
Q ss_pred Eee
Q psy6838 388 VVD 390 (442)
Q Consensus 388 V~d 390 (442)
|.|
T Consensus 213 V~D 215 (215)
T 2qvi_A 213 VTD 215 (215)
T ss_dssp ECC
T ss_pred EEC
Confidence 986
No 22
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=100.00 E-value=9.3e-37 Score=272.93 Aligned_cols=198 Identities=30% Similarity=0.411 Sum_probs=176.6
Q ss_pred EEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCC
Q psy6838 17 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE 96 (442)
Q Consensus 17 ~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~ 96 (442)
.++|+|+++ |+.++++.|.|.|.+.|+.++|+|.++.. .+...+
T Consensus 6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~-----------------------------------~~~~~~ 49 (215)
T 2qvi_A 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGA-----------------------------------DQPPTG 49 (215)
T ss_dssp CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTS-----------------------------------SSTTCS
T ss_pred cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCC-----------------------------------CCCCCC
Confidence 579999999 98889999999998878888888865310 012346
Q ss_pred cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCCcE
Q psy6838 97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTV 175 (442)
Q Consensus 97 ~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g~~ 175 (442)
+|.|++.+|.|++.++||||....|.|+|+|+|.++++ +++++.|.|+|.|+|||+|.|... |.+.|+|++++|+.
T Consensus 50 ~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~ 126 (215)
T 2qvi_A 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ---VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY 126 (215)
T ss_dssp SEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCC---CEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCE
T ss_pred cEEEeCCccEEEECcccCcccCCeEEEEEEEEECCCCc---eeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCE
Confidence 88888889999999999999999999999999999865 788999999999999999999976 89999999999999
Q ss_pred EEEEEEEeCCC--CCCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCC---CCcee
Q psy6838 176 VAALKAIDRDE--GQNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEP---SKSSR 244 (442)
Q Consensus 176 v~~v~a~D~D~--~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~---~~~~~ 244 (442)
|+++.|+|+|. +.|+.++|+|.++. .+.|.|++.+|.|++. ++||||....|.|.|+|+|+|++ +++++
T Consensus 127 v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t 206 (215)
T 2qvi_A 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNT 206 (215)
T ss_dssp EEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCE
T ss_pred EEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceE
Confidence 99999999998 78999999999874 4789999999999995 79999999999999999999887 78999
Q ss_pred EEEEEEEEe
Q psy6838 245 TKFFIRLLD 253 (442)
Q Consensus 245 ~~v~I~V~d 253 (442)
++|+|.|.|
T Consensus 207 ~~v~I~V~D 215 (215)
T 2qvi_A 207 ATAVITVTD 215 (215)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEC
Confidence 999999976
No 23
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=100.00 E-value=4.5e-36 Score=268.76 Aligned_cols=196 Identities=27% Similarity=0.364 Sum_probs=174.1
Q ss_pred EEEEecCCC--CCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838 17 AFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD 94 (442)
Q Consensus 17 ~~~v~E~~~--~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~ 94 (442)
.++|+|+++ .|+.|+++.| |.|. ++.++|+|.++.. .+..
T Consensus 6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~-----------------------------------~~~~ 47 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGA-----------------------------------DKPP 47 (213)
T ss_dssp EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTT-----------------------------------TBSS
T ss_pred CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCC-----------------------------------CCCC
Confidence 789999999 6788999999 7775 7778888765211 0223
Q ss_pred CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838 95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN 173 (442)
Q Consensus 95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g 173 (442)
.++|.|++.+|.|++.++||||....|.|+|+|+|.++++ ++++++|.|+|.|+|||+|.|... |.+.|.|++++|
T Consensus 48 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~g 124 (213)
T 3qrb_A 48 VGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG 124 (213)
T ss_dssp TTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCB---CSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTT
T ss_pred CCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCCCCc---ccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCC
Confidence 4588888899999999999999999999999999998865 678899999999999999999986 899999999999
Q ss_pred cEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCCCCcee
Q psy6838 174 TVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSKSSR 244 (442)
Q Consensus 174 ~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~~~~~~ 244 (442)
+.|+++.|+|+|.+ .|+.++|+|.++. .+.|.|++.+|.|++. ++||||....|.|.|+|+|+|.|+++++
T Consensus 125 t~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t 204 (213)
T 3qrb_A 125 TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204 (213)
T ss_dssp CEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEE
T ss_pred cEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEE
Confidence 99999999999998 8899999998753 4689999999999997 7999999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy6838 245 TKFFIRLLD 253 (442)
Q Consensus 245 ~~v~I~V~d 253 (442)
++|+|+|.|
T Consensus 205 ~~v~I~V~D 213 (213)
T 3qrb_A 205 AKAVITVKD 213 (213)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 999999986
No 24
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=100.00 E-value=6.8e-36 Score=267.60 Aligned_cols=193 Identities=30% Similarity=0.442 Sum_probs=171.6
Q ss_pred eeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEe
Q psy6838 163 ETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD 235 (442)
Q Consensus 163 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D 235 (442)
.+.|+||.+ .|+.|+++.| |.|. ++.++|+|.++. .++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus 6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D 82 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82 (213)
T ss_dssp EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEe
Confidence 678999998 6788999998 7774 777999999854 34899999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEE
Q psy6838 236 RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQV 315 (442)
Q Consensus 236 ~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v 315 (442)
++++++++.+.|+|.|.|+|||+|.|....|. +.|.|++++|+.|+++
T Consensus 83 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~--------------------------------~~v~En~~~gt~v~~v 130 (213)
T 3qrb_A 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFE--------------------------------GSVAEGAVPGTSVMKV 130 (213)
T ss_dssp TTSCBCSCCEEEEEEEECCSCCCCEESCSEEE--------------------------------EEEETTCCTTCEEEEC
T ss_pred CCCCcccceEEEEEEEEEccCCCCccCCCceE--------------------------------EEEECCCCCCcEEEEE
Confidence 99988999999999999999999999776654 4555666777777777
Q ss_pred EEEeCCCC---CCeEEEEEEEeCC----CCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCCCceEEEEEEEE
Q psy6838 316 FTTDADEG---VNGVVTYSVVSDW----ANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFN 387 (442)
Q Consensus 316 ~a~D~D~~---~~~~i~y~l~~~~----~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~ 387 (442)
.|+|+|.+ .|+.++|+|..++ ..+.|.|++.+|.|++. +.||||....|.|+|+|+|+|.|+++++++|+|+
T Consensus 131 ~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~ 210 (213)
T 3qrb_A 131 SATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT 210 (213)
T ss_dssp CEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEE
T ss_pred EEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEE
Confidence 78999998 8899999998664 45799999999999997 7999999999999999999999999999999999
Q ss_pred Eee
Q psy6838 388 VVD 390 (442)
Q Consensus 388 V~d 390 (442)
|.|
T Consensus 211 V~D 213 (213)
T 3qrb_A 211 VKD 213 (213)
T ss_dssp EEC
T ss_pred EEC
Confidence 987
No 25
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=100.00 E-value=3.9e-35 Score=260.17 Aligned_cols=190 Identities=30% Similarity=0.473 Sum_probs=170.0
Q ss_pred EEEEecCCCCC--cEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838 17 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD 94 (442)
Q Consensus 17 ~~~v~E~~~~g--~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~ 94 (442)
.++|+||.+.| ..|+++. +|+|.|.+ +|+|.. ++.
T Consensus 6 ~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~---------------------------------------~~~ 42 (203)
T 3ppe_A 6 RMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEG---------------------------------------ESA 42 (203)
T ss_dssp EEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEE---------------------------------------TTB
T ss_pred cEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEec---------------------------------------CCC
Confidence 68999999998 8888888 99997654 666654 444
Q ss_pred CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838 95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN 173 (442)
Q Consensus 95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g 173 (442)
.++|.|++.+|.|++.++||||....|.|+|+|+|+++++ ++++++.|.|.|.|+|||+|.|... |.+.|+|++++|
T Consensus 43 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g 120 (203)
T 3ppe_A 43 NTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNR--SLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120 (203)
T ss_dssp TTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTTE--ECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTT
T ss_pred CCeEEEECCcCEEEECccccccccceEEEEEEEEECCCCC--cccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCC
Confidence 5678888889999999999999999999999999998752 2578899999999999999999977 899999999999
Q ss_pred cEEEEEEEEeCC---CCCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeC-CCCCCceeEEEE
Q psy6838 174 TVVAALKAIDRD---EGQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFF 248 (442)
Q Consensus 174 ~~v~~v~a~D~D---~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~-~~~~~~~~~~v~ 248 (442)
+.|+++.|+|+| .|.|+.++|+|.++. ..|.|+ .+|.|++. ++||||....|.|.|+|+|+ |.|+++++++|+
T Consensus 121 t~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~-~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~ 198 (203)
T 3ppe_A 121 TSVTKVTAEDADDPTVAGHATVTYQIIKGN-EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVI 198 (203)
T ss_dssp CEEEECCEECCSCTTSSSTTCEEEEEEEST-TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEE
T ss_pred cEEEEEEEEcCCCcCCCCceEEEEEEeCCC-CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEE
Confidence 999999999999 477889999999886 589999 89999999 99999999999999999998 777899999999
Q ss_pred EEEEe
Q psy6838 249 IRLLD 253 (442)
Q Consensus 249 I~V~d 253 (442)
|+|.|
T Consensus 199 I~V~D 203 (203)
T 3ppe_A 199 IRLTD 203 (203)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99986
No 26
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=100.00 E-value=5.6e-35 Score=259.16 Aligned_cols=190 Identities=32% Similarity=0.410 Sum_probs=168.7
Q ss_pred CeeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838 162 NETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238 (442)
Q Consensus 162 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~ 238 (442)
..+.|.||.+.| ..++++. +|+|.+.+ +|+|.++. .++|.|++.+|.|++.++||||....|.|+|.|+|++.
T Consensus 5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~ 80 (203)
T 3ppe_A 5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRN 80 (203)
T ss_dssp SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTT
T ss_pred ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECccccccccceEEEEEEEEECCC
Confidence 468899999988 8889998 99998876 99999876 55899999999999999999999999999999999987
Q ss_pred C-CCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838 239 P-SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317 (442)
Q Consensus 239 ~-~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a 317 (442)
| ++++.+.|+|.|.|+|||+|.|....|. +.|.|++++|+.|+++.|
T Consensus 81 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~--------------------------------~~v~E~~~~gt~v~~v~A 128 (203)
T 3ppe_A 81 NRSLEPPSKFIIKVSDINDNAPIFVQKIFN--------------------------------GSVPEMSRLGTSVTKVTA 128 (203)
T ss_dssp TEECSCCEEEEEEEECCCCCCCEESCSEEE--------------------------------EEEETTCCTTCEEEECCE
T ss_pred CCcccceEEEEEEEcCCCCCCCCccCCccE--------------------------------EEEeccCCCCcEEEEEEE
Confidence 6 6888999999999999999999877654 455566667777777777
Q ss_pred EeCC---CCCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEEC-CCCCceEEEEEEEEEee
Q psy6838 318 TDAD---EGVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDT-GKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 318 ~D~D---~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~-~~~~~~~~~~v~I~V~d 390 (442)
+|+| .|.|+.++|+|..++ .+|.|+ .+|.|++. +.||||....|.|+|+|+|+ |.|+++++++|+|+|.|
T Consensus 129 ~D~D~~~~g~n~~i~Y~i~~~~--~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~D 203 (203)
T 3ppe_A 129 EDADDPTVAGHATVTYQIIKGN--EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203 (203)
T ss_dssp ECCSCTTSSSTTCEEEEEEEST--TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred EcCCCcCCCCceEEEEEEeCCC--CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence 9999 477899999999764 599999 99999999 99999999999999999998 77889999999999987
No 27
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=100.00 E-value=3.5e-35 Score=263.92 Aligned_cols=195 Identities=28% Similarity=0.405 Sum_probs=172.4
Q ss_pred EEEEecCCCCC--cEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838 17 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD 94 (442)
Q Consensus 17 ~~~v~E~~~~g--~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~ 94 (442)
.++|+|+.++| +.|+++.|.|.|. .++|+|..+.. .++.
T Consensus 7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~-----------------------------------~~~~ 47 (218)
T 3k5r_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGV-----------------------------------DQDP 47 (218)
T ss_dssp CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTT-----------------------------------TBSS
T ss_pred cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCC-----------------------------------CCCC
Confidence 58999999998 8899999998774 56777754210 1234
Q ss_pred CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838 95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN 173 (442)
Q Consensus 95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g 173 (442)
.++|.|++.+|.|++.++||||....|.|+|+|+|.++++ +++++.|.|+|.|+|||+|.|... |.+.|+|++++|
T Consensus 48 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g 124 (218)
T 3k5r_A 48 KGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTG 124 (218)
T ss_dssp TTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSSCE---EEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTT
T ss_pred CCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCCCc---eeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCC
Confidence 5789999899999999999999999999999999988764 789999999999999999999866 899999999999
Q ss_pred cEEEEEEEEeCCC--CCCceEEEEEecCCC-----CCeEecCcceEEEEc---ccCCccc--ccEEEEEEEEEeCC--CC
Q psy6838 174 TVVAALKAIDRDE--GQNSYVEYSIINSEA-----TPFSLGPVDGLLRVA---QKLDREI--KSNYTLEIKAKDRG--EP 239 (442)
Q Consensus 174 ~~v~~v~a~D~D~--~~~~~~~y~i~~~~~-----~~F~id~~tG~i~~~---~~lD~e~--~~~~~l~V~a~D~~--~~ 239 (442)
+.|+++.|+|+|. +.|+.++|+|.++.. ++|.|++.+|.|++. +.||||. ...|.|.|+|+|+| .|
T Consensus 125 t~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p 204 (218)
T 3k5r_A 125 TTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDV 204 (218)
T ss_dssp CEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTT
T ss_pred CEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCC
Confidence 9999999999999 678999999997653 579999999999987 6999999 67999999999999 88
Q ss_pred CCceeEEEEEEEEe
Q psy6838 240 SKSSRTKFFIRLLD 253 (442)
Q Consensus 240 ~~~~~~~v~I~V~d 253 (442)
+++++++|+|+|.|
T Consensus 205 ~~sst~~v~I~V~D 218 (218)
T 3k5r_A 205 GLTGTATATIVIDD 218 (218)
T ss_dssp TCEEEEEEEEEEEC
T ss_pred CeeEEEEEEEEEEC
Confidence 99999999999986
No 28
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=100.00 E-value=3.5e-35 Score=263.90 Aligned_cols=193 Identities=26% Similarity=0.418 Sum_probs=169.3
Q ss_pred CeeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838 162 NETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234 (442)
Q Consensus 162 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~ 234 (442)
..+.|+||.+.| +.++++.|.|.|. .++|+|.+.. .++|.|++.+|.|++.++||||....|.|+|.|+
T Consensus 6 ~~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~ 81 (218)
T 3k5r_A 6 SPILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81 (218)
T ss_dssp CCEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred CcEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEE
Confidence 368899999988 8899999998875 4899997543 4789999999999999999999999999999999
Q ss_pred eCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEE
Q psy6838 235 DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ 314 (442)
Q Consensus 235 D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~ 314 (442)
|++++++++++.|+|.|.|+|||+|.|....|.+ .|.|++++|+.|++
T Consensus 82 D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~v~E~~~~gt~v~~ 129 (218)
T 3k5r_A 82 DASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIG--------------------------------HVMEGSPTGTTVMR 129 (218)
T ss_dssp CSSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEE--------------------------------EEETTCCTTCEEEE
T ss_pred ECCCCceeeeEEEEEEEEeCCCCCCcccCCceEE--------------------------------EEECCCCCCCEEEE
Confidence 9999889999999999999999999997776554 45566666677777
Q ss_pred EEEEeCCC--CCCeEEEEEEEeCCCC----CCeEEeCCccEEEEc---ccCCCcc--CcEEEEEEEEEECC--CCCceEE
Q psy6838 315 VFTTDADE--GVNGVVTYSVVSDWAN----DVFSINPQSGIFTLT---AKLDYED--VHHYIFVVQAQDTG--KPMMSST 381 (442)
Q Consensus 315 v~a~D~D~--~~~~~i~y~l~~~~~~----~~f~id~~tG~l~~~---~~ld~e~--~~~~~l~V~a~D~~--~~~~~~~ 381 (442)
+.|+|+|. +.|+.++|+|.++... ++|.|++.+|.|++. +.||||. ...|.|.|+|+|+| .|+++++
T Consensus 130 v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst 209 (218)
T 3k5r_A 130 MTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGT 209 (218)
T ss_dssp CCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEE
T ss_pred EEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEE
Confidence 77799998 6799999999976543 689999999999987 6999999 67999999999999 7889999
Q ss_pred EEEEEEEee
Q psy6838 382 VTVYFNVVD 390 (442)
Q Consensus 382 ~~v~I~V~d 390 (442)
++|+|+|.|
T Consensus 210 ~~v~I~V~D 218 (218)
T 3k5r_A 210 ATATIVIDD 218 (218)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 999999987
No 29
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=100.00 E-value=1.2e-35 Score=264.67 Aligned_cols=193 Identities=32% Similarity=0.476 Sum_probs=163.4
Q ss_pred CeeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC-
Q psy6838 162 NETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG- 237 (442)
Q Consensus 162 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~- 237 (442)
..+.|.|+.+.+ +.++++ |+|+|.| ++.++|+|.++. .++|.|++.+|.|++.++||||....|.|.|.|+|++
T Consensus 5 ~~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~ 82 (207)
T 3lnd_A 5 NQFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRT 82 (207)
T ss_dssp CCEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSS
T ss_pred cccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCC
Confidence 357899998855 588888 8999998 567999998776 3589999999999999999999999999999999987
Q ss_pred CCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838 238 EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317 (442)
Q Consensus 238 ~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a 317 (442)
.+++++.+.|+|.|.|+|||+|.|....|.+ .|.|+++.|+.++++.|
T Consensus 83 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~v~E~~~~gt~v~~v~A 130 (207)
T 3lnd_A 83 GRPVEPESEFIIKIHDINDNEPIFTKDVYTA--------------------------------TVPEMADVGTFVVQVTA 130 (207)
T ss_dssp CCCCSCCCCCEEEEECCSCCCCEESCSEEEE--------------------------------EEESSCCTTCEEEECCE
T ss_pred CCccccEEEEEEEECccCCCCCccCCCceEE--------------------------------EEeCCCCCCCEEEEEEE
Confidence 4678889999999999999999998776554 45566667777777777
Q ss_pred EeCCC---CCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCC--CceEEEEEEEEEee
Q psy6838 318 TDADE---GVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKP--MMSSTVTVYFNVVD 390 (442)
Q Consensus 318 ~D~D~---~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~--~~~~~~~v~I~V~d 390 (442)
+|+|. |.|+.++|+|..+ ..+|.|++.+|.|++. +.||||....|.|+|+|+|+|.| +++++++|+|+|.|
T Consensus 131 ~D~D~~~~g~n~~i~Y~i~~~--~~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D 207 (207)
T 3lnd_A 131 TDADDPTYGNSAKVVYSILQG--QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207 (207)
T ss_dssp ECSSCTTSSSTTCCEEEEEES--GGGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred EeCCCCCCCCCcEEEEEEcCC--CCCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence 99998 7888999999965 3599999999999999 99999999999999999999876 79999999999987
No 30
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=100.00 E-value=9.6e-36 Score=265.24 Aligned_cols=193 Identities=32% Similarity=0.521 Sum_probs=164.4
Q ss_pred EEEEecCCCCC--cEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838 17 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD 94 (442)
Q Consensus 17 ~~~v~E~~~~g--~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~ 94 (442)
.+.|+|+.+.| +.|+++ |+|+|.| ++.++|+|.. ++.
T Consensus 6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~---------------------------------------~~~ 44 (207)
T 3lnd_A 6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSG---------------------------------------DGA 44 (207)
T ss_dssp CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCS---------------------------------------SSB
T ss_pred ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEEC---------------------------------------CCC
Confidence 57899999965 588888 9999987 5567776643 333
Q ss_pred CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838 95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN 173 (442)
Q Consensus 95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g 173 (442)
.++|.|++.+|.|++.++||||....|.|+|+|+|+++.+ ++++++.|.|+|.|+|||+|.|... |.+.|+|++++|
T Consensus 45 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g 122 (207)
T 3lnd_A 45 GDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGR--PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG 122 (207)
T ss_dssp TTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSSCC--CCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTT
T ss_pred CCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCCCC--ccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCC
Confidence 4578888889999999999999999999999999987422 2678889999999999999999976 899999999999
Q ss_pred cEEEEEEEEeCCC---CCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCC--CCceeEEE
Q psy6838 174 TVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEP--SKSSRTKF 247 (442)
Q Consensus 174 ~~v~~v~a~D~D~---~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~--~~~~~~~v 247 (442)
+.|+++.|+|+|. |.|+.++|+|.++. ..|.|++.+|.|++. ++||||....|.|.|+|+|+|.| +++++++|
T Consensus 123 t~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~-~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v 201 (207)
T 3lnd_A 123 TFVVQVTATDADDPTYGNSAKVVYSILQGQ-PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTV 201 (207)
T ss_dssp CEEEECCEECSSCTTSSSTTCCEEEEEESG-GGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEE
T ss_pred CEEEEEEEEeCCCCCCCCCcEEEEEEcCCC-CCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEE
Confidence 9999999999998 78889999999875 589999999999999 99999999999999999999876 78999999
Q ss_pred EEEEEe
Q psy6838 248 FIRLLD 253 (442)
Q Consensus 248 ~I~V~d 253 (442)
+|+|.|
T Consensus 202 ~I~V~D 207 (207)
T 3lnd_A 202 NITLTD 207 (207)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 31
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.97 E-value=1.1e-30 Score=236.79 Aligned_cols=195 Identities=23% Similarity=0.316 Sum_probs=157.3
Q ss_pred eEEEEEecCCCCCcEEEEEEeee-CCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCC
Q psy6838 15 VYAFDVLEDLPRGSRVGQVFTTD-ADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD 93 (442)
Q Consensus 15 ~~~~~v~E~~~~g~~v~~~~a~D-~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~ 93 (442)
.+.+.|+|++++|+.|..+.+.| .|.++++.++|+|.. .
T Consensus 21 ~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~----------------------------------------~ 60 (242)
T 4apx_B 21 ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD----------------------------------------N 60 (242)
T ss_dssp SEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES----------------------------------------C
T ss_pred eEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec----------------------------------------C
Confidence 46789999999999998765554 445777778888754 1
Q ss_pred CCCcEEEeCCccEEEEc---ccCCcccCcEEEEE---EEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEe
Q psy6838 94 DEEIFTINPSNGTLSNL---KHLDRETKSSYNLV---VMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTI 166 (442)
Q Consensus 94 ~~~~F~i~~~~g~l~~~---~~lD~E~~~~~~l~---v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v 166 (442)
...+|.|++.+|.+.+. +.||||....|.+. +.+.+.... ....+.|.|.|.|+|||+|.|... |.+.|
T Consensus 61 ~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~~~~~~~~----~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v 136 (242)
T 4apx_B 61 VDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVG----TVIYHEVRIVVRDRNDNSPTFKHESYYATV 136 (242)
T ss_dssp GGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEEEEETTTC----CEEEEEEEEEEECCCCCCCEESSSCEEEEE
T ss_pred CCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEEeECCCCC----eEEEEEEEEEEEeCCCCCCcccceeeeeEe
Confidence 23456666677776653 67999987665544 444554322 467788999999999999999977 89999
Q ss_pred eCCCCCCcEEEE-----EEEEeCCCCCCceEEEEEecCCC-----CCeEecC-cceEEEEcccCCcccccEEEEEEEEEe
Q psy6838 167 PENSPLNTVVAA-----LKAIDRDEGQNSYVEYSIINSEA-----TPFSLGP-VDGLLRVAQKLDREIKSNYTLEIKAKD 235 (442)
Q Consensus 167 ~E~~~~g~~v~~-----v~a~D~D~~~~~~~~y~i~~~~~-----~~F~id~-~tG~i~~~~~lD~e~~~~~~l~V~a~D 235 (442)
+|++++|+.|.+ +.|+|+|.|.|+.++|+|..+.. +.|.|+. .+|.|+++++||||....|.|.|+|+|
T Consensus 137 ~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D 216 (242)
T 4apx_B 137 NELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND 216 (242)
T ss_dssp ETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEE
T ss_pred eeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEE
Confidence 999999999976 78999999999999999998763 3599995 599999999999999999999999999
Q ss_pred CCCCC---CceeEEEEEEEEe
Q psy6838 236 RGEPS---KSSRTKFFIRLLD 253 (442)
Q Consensus 236 ~~~~~---~~~~~~v~I~V~d 253 (442)
+|.|+ +++.+.|+|.|.-
T Consensus 217 ~G~~~~~~~~~~~~vtVnVe~ 237 (242)
T 4apx_B 217 RAQNLNERRTTTTTLTVDLEH 237 (242)
T ss_dssp CCSSGGGCCEEEEEEEEEEEC
T ss_pred CCcCchhcccCCceEEEEEee
Confidence 99874 6778888888864
No 32
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.97 E-value=2.2e-30 Score=234.73 Aligned_cols=201 Identities=26% Similarity=0.373 Sum_probs=160.7
Q ss_pred CeeEeeCCCCCCcEEEEEEE-EeCCCCCCceEEEEEecCCCCCeEecCcceEEEEc---ccCCcccccEEEE---EEEEE
Q psy6838 162 NETTIPENSPLNTVVAALKA-IDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVA---QKLDREIKSNYTL---EIKAK 234 (442)
Q Consensus 162 ~~~~v~E~~~~g~~v~~v~a-~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~---~~lD~e~~~~~~l---~V~a~ 234 (442)
+.+.|+|++++|+.+..+.+ .|.|.+.++.++|+|.+....+|.|++.+|.+.+. +.||||....|.+ .+.|.
T Consensus 22 ~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~~~ 101 (242)
T 4apx_B 22 TIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCV 101 (242)
T ss_dssp EEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEEEE
T ss_pred EEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEEeE
Confidence 56789999999999877554 45556788889999998877899999999999885 6799998766554 44445
Q ss_pred eCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEE
Q psy6838 235 DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ 314 (442)
Q Consensus 235 D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~ 314 (442)
+.+ .+..+.+.|+|.|.|+|||+|.|....|.+.|+|+.++|+.|+++.. +.
T Consensus 102 ~~~-~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~---------------------------~~ 153 (242)
T 4apx_B 102 NKK-VGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS---------------------------GD 153 (242)
T ss_dssp ETT-TCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTT---------------------------TT
T ss_pred CCC-CCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeee---------------------------cc
Confidence 543 24566788999999999999999888877776666666555543211 12
Q ss_pred EEEEeCCCCCCeEEEEEEEeCCCC----CCeEEeC-CccEEEEcccCCCccCcEEEEEEEEEECCCCC---ceEEEEEEE
Q psy6838 315 VFTTDADEGVNGVVTYSVVSDWAN----DVFSINP-QSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM---MSSTVTVYF 386 (442)
Q Consensus 315 v~a~D~D~~~~~~i~y~l~~~~~~----~~f~id~-~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~---~~~~~~v~I 386 (442)
+.|+|+|.|.|+.++|+|..++.. +.|.|+. .+|.|++++.||||....|.|+|+|+|+|.|+ +++.+.|+|
T Consensus 154 v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtV 233 (242)
T 4apx_B 154 NGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTV 233 (242)
T ss_dssp TSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEE
T ss_pred cccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEE
Confidence 556999999999999999966443 3699995 59999999999999999999999999999875 778899999
Q ss_pred EEee
Q psy6838 387 NVVD 390 (442)
Q Consensus 387 ~V~d 390 (442)
+|.-
T Consensus 234 nVe~ 237 (242)
T 4apx_B 234 DLEH 237 (242)
T ss_dssp EEEC
T ss_pred EEee
Confidence 8864
No 33
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=5.3e-28 Score=195.32 Aligned_cols=116 Identities=34% Similarity=0.532 Sum_probs=103.6
Q ss_pred CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS 80 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~ 80 (442)
|.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.|.|+.++|+|..+..
T Consensus 4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~------------------------- 58 (119)
T 2yst_A 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATE------------------------- 58 (119)
T ss_dssp CCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCT-------------------------
T ss_pred EecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCC-------------------------
Confidence 7899999999999999999999999999999999999999988888888865211
Q ss_pred CCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156 (442)
Q Consensus 81 ~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P 156 (442)
...++|.|++.+|.|+++++||||....|.|+|+|+|+++++ ++++++|.|+|.|+|||+|
T Consensus 59 ------------~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~p~---~s~~~~v~I~V~DvNDn~P 119 (119)
T 2yst_A 59 ------------SVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP---KTDKATVVLNIKDENDNVP 119 (119)
T ss_dssp ------------THHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEECCSBTTB---CCEEEEEEEEEECSTTCCC
T ss_pred ------------ccccEEEEeCCceEEEECccCCcccCCEEEEEEEEEECCCCC---cEEEEEEEEEEEeccCCCC
Confidence 013578888889999999999999999999999999999865 6899999999999999998
No 34
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=186.32 Aligned_cols=114 Identities=34% Similarity=0.534 Sum_probs=99.5
Q ss_pred EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCC--CCCeEEeCCccEEEEcccCCCcc
Q psy6838 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWA--NDVFSINPQSGIFTLTAKLDYED 360 (442)
Q Consensus 283 v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~--~~~f~id~~tG~l~~~~~ld~e~ 360 (442)
|.++||++|.|.+..|.+.|.|++++|+.|+++.|+|+|.|.|+.++|+|.++.. ..+|.|++.+|.|++++.||||.
T Consensus 4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~ 83 (119)
T 2yst_A 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREE 83 (119)
T ss_dssp CCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTTT
T ss_pred EecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCccc
Confidence 3455555566666667777888888888888888899999999999999986532 36899999999999999999999
Q ss_pred CcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCC
Q psy6838 361 VHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396 (442)
Q Consensus 361 ~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P 396 (442)
...|.|+|+|+|+|.|+++++++|+|+|.|+|||+|
T Consensus 84 ~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P 119 (119)
T 2yst_A 84 VNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119 (119)
T ss_dssp CSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred CCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence 999999999999999999999999999999999998
No 35
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=179.67 Aligned_cols=111 Identities=32% Similarity=0.469 Sum_probs=97.8
Q ss_pred CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS 80 (442)
Q Consensus 1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~ 80 (442)
|.|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|.|.|+.++|+|..+.
T Consensus 4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-------------------------- 57 (114)
T 2ee0_A 4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQV-------------------------- 57 (114)
T ss_dssp CCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSC--------------------------
T ss_pred EeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCC--------------------------
Confidence 789999999999999999999999999999999999999998888888885421
Q ss_pred CCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEecc
Q psy6838 81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVN 152 (442)
Q Consensus 81 ~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvN 152 (442)
.+...++|.|++.+|.|++.++||||....|.|+|+|+|++++ +++++|.|+|.|+|
T Consensus 58 ----------~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~~-----~~~~~v~I~V~DvN 114 (114)
T 2ee0_A 58 ----------APATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSST-----PARATVTINVTDVN 114 (114)
T ss_dssp ----------CHHHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEEESSSSS-----CEEEEEEEEEECCC
T ss_pred ----------CCCccceEEEeCCeeEEEECccCCcccCcEEEEEEEEEECCCC-----ceEEEEEEEEEECC
Confidence 0123457888888999999999999999999999999999875 37789999999997
No 36
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=4.1e-24 Score=170.81 Aligned_cols=108 Identities=33% Similarity=0.442 Sum_probs=92.0
Q ss_pred EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeC---CCCCCeEEeCCccEEEEcccCCCc
Q psy6838 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD---WANDVFSINPQSGIFTLTAKLDYE 359 (442)
Q Consensus 283 v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~---~~~~~f~id~~tG~l~~~~~ld~e 359 (442)
|.++||++|.|.+..|.+.|.|++++|+.|+++.|+|+|.|.|+.++|+|.+. +...+|.|++.+|.|+++++||||
T Consensus 4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~E 83 (114)
T 2ee0_A 4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDRE 83 (114)
T ss_dssp CCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCTT
T ss_pred EeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCcc
Confidence 34455555566666677777888888888888888999999999999999852 245689999999999999999999
Q ss_pred cCcEEEEEEEEEECCCCCceEEEEEEEEEeeCC
Q psy6838 360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN 392 (442)
Q Consensus 360 ~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvN 392 (442)
....|.|+|+|+|+|.|+ ++++|+|+|.|+|
T Consensus 84 ~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN 114 (114)
T 2ee0_A 84 ETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114 (114)
T ss_dssp TCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred cCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence 999999999999999865 7899999999998
No 37
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=169.20 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=104.2
Q ss_pred CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCc
Q psy6838 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVH 362 (442)
Q Consensus 287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~ 362 (442)
+.+.|.|..+.|.+.+.|+++.|+.|+++. +|.|.+.|+.++|+|.++ +..++|.|++.+|.|++++.||||...
T Consensus 6 ~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~ 84 (123)
T 2yqg_A 6 SGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETP 84 (123)
T ss_dssp SCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBS
T ss_pred cccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCc
Confidence 467788888888899999999999999999 699999899999999975 345799999999999999999999999
Q ss_pred EEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCC
Q psy6838 363 HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP 400 (442)
Q Consensus 363 ~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~ 400 (442)
.|.|+|.|+|+|.|++++++.|.|+|.|+|||+|.|.+
T Consensus 85 ~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~ 122 (123)
T 2yqg_A 85 FFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122 (123)
T ss_dssp EEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred eEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence 99999999999999999999999999999999999975
No 38
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=163.33 Aligned_cols=118 Identities=23% Similarity=0.298 Sum_probs=102.6
Q ss_pred CCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCC
Q psy6838 4 TNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNG 83 (442)
Q Consensus 4 vNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~ 83 (442)
.+.+.|.|....|.+.+.|++++|+.|+++. +|+|.|.|+.++|+|..+..
T Consensus 5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~---------------------------- 55 (123)
T 2yqg_A 5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGI---------------------------- 55 (123)
T ss_dssp SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTT----------------------------
T ss_pred ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCC----------------------------
Confidence 5789999999999999999999999999999 69998888888888876310
Q ss_pred cEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeecc
Q psy6838 84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFIT 160 (442)
Q Consensus 84 ~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~ 160 (442)
.....++|.|++.+|.|++.++||||....|.|+|.|+|.++++ +++++.|.|.|.|+|||+|.|..
T Consensus 56 -------~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~---~~~~~~v~I~V~DvNDn~P~F~~ 122 (123)
T 2yqg_A 56 -------TEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNN---VEKPLELRIKVLDINDNEPVFTQ 122 (123)
T ss_dssp -------TBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEEEEEECTTCCE---EEEEECCEEEEECTTCCCCCCCC
T ss_pred -------CCCcCCCEEEeCCcCEEEECcccCcccCceEEEEEEEEECCCCc---eEEEEEEEEEEEEcCCCCCEeCC
Confidence 00234688888899999999999999999999999999998764 78999999999999999999975
No 39
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.85 E-value=3e-21 Score=152.95 Aligned_cols=98 Identities=26% Similarity=0.374 Sum_probs=79.8
Q ss_pred eeEEEecCCCCCcE--EEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEE
Q psy6838 298 YAFDVLEDLPRGSR--VGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371 (442)
Q Consensus 298 ~~~~v~E~~~~g~~--v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~ 371 (442)
|.+.|.||++.|+. ++++ |.|.+.|+.++|+|.++ +..+.|.|++.+|.|+++++||||....|.|+|.|+
T Consensus 7 ~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 83 (110)
T 1ncg_A 7 PPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 83 (110)
T ss_dssp CCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred eeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEE
Confidence 57889999999995 5554 67777899999999963 356799999999999999999999999999999999
Q ss_pred ECCCCCceEEEEEEEEEeeCCCCCCcc
Q psy6838 372 DTGKPMMSSTVTVYFNVVDLNDNPPLF 398 (442)
Q Consensus 372 D~~~~~~~~~~~v~I~V~dvNd~~P~f 398 (442)
|+|.|+++++++|.|+|.|+|||+|.|
T Consensus 84 D~g~p~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 84 DINGNQVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp CTTSCBCSCCEEEEEEEC---------
T ss_pred ECCCCceeeEEEEEEEEEECCCCCCCC
Confidence 999999999999999999999999987
No 40
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.82 E-value=3.4e-20 Score=146.87 Aligned_cols=97 Identities=27% Similarity=0.429 Sum_probs=79.6
Q ss_pred CeeEeeCCCCCCcE--EEEEEEEeCCCCCCceEEEEEecC-----CCCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838 162 NETTIPENSPLNTV--VAALKAIDRDEGQNSYVEYSIINS-----EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234 (442)
Q Consensus 162 ~~~~v~E~~~~g~~--v~~v~a~D~D~~~~~~~~y~i~~~-----~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~ 234 (442)
+.++|+||+++|+. ++++ |.|.+.|+.++|+|.++ ..+.|.|++.+|.|++.++||||....|.|.|.|+
T Consensus 7 ~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 83 (110)
T 1ncg_A 7 PPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 83 (110)
T ss_dssp CCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred eeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEE
Confidence 57899999999994 5555 77878899999999974 25689999999999999999999999999999999
Q ss_pred eCCCCCCceeEEEEEEEEeCCCCCCee
Q psy6838 235 DRGEPSKSSRTKFFIRLLDENDNNPIF 261 (442)
Q Consensus 235 D~~~~~~~~~~~v~I~V~d~nd~~P~f 261 (442)
|+|.|++++++.|+|.|.|+|||+|.|
T Consensus 84 D~g~p~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 84 DINGNQVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp CTTSCBCSCCEEEEEEEC---------
T ss_pred ECCCCceeeEEEEEEEEEECCCCCCCC
Confidence 999999999999999999999999987
No 41
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3.2e-20 Score=150.07 Aligned_cols=107 Identities=23% Similarity=0.348 Sum_probs=93.1
Q ss_pred CcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEE---EEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEE
Q psy6838 295 EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV---TYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFV 367 (442)
Q Consensus 295 ~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i---~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~ 367 (442)
...+.+.|.|++++|+.|+++ |+|.|.+. +.+ +|+|.+++...+|.|++.||.|+++++||||.. ..|.|+
T Consensus 10 ~~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~ 87 (125)
T 1wyj_A 10 SATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILH 87 (125)
T ss_dssp CCCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBC
T ss_pred CceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEE
Confidence 445778999999999999999 89998764 334 899997777789999999999999999999999 999999
Q ss_pred EEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCCCeeE
Q psy6838 368 VQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIP 406 (442)
Q Consensus 368 V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~ 406 (442)
|+|.+. .| . ..++|.|+|.|+|||+|.|.++.|.++
T Consensus 88 v~a~~~-~p-~-~~~~V~I~V~DvNDN~P~F~~~~y~vs 123 (125)
T 1wyj_A 88 FQVLLK-SP-V-QFIQGEIQLQDVNDHAPEFMEDESGPS 123 (125)
T ss_dssp CEEEET-TT-T-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred EEEEEC-CC-C-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence 999984 33 3 488999999999999999999888764
No 42
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.77 E-value=1.6e-18 Score=133.94 Aligned_cols=91 Identities=27% Similarity=0.410 Sum_probs=83.8
Q ss_pred eeEEEecCCC--CCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECC-
Q psy6838 298 YAFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG- 374 (442)
Q Consensus 298 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~- 374 (442)
..+.|.||.+ .|+.|+++. +|+|.| |+.++|+|.++...+.|.|++.+|.|++.++||||....|.|+|.|+|+|
T Consensus 6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~ 83 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRT 83 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCC
Confidence 4678999976 689999999 999999 99999999976666789999999999999999999999999999999999
Q ss_pred CCCceEEEEEEEEEee
Q psy6838 375 KPMMSSTVTVYFNVVD 390 (442)
Q Consensus 375 ~~~~~~~~~v~I~V~d 390 (442)
+|++++.++|.|+|.|
T Consensus 84 ~p~l~~~~~v~I~V~D 99 (99)
T 1zvn_A 84 GRPMEPESEFIIKIQD 99 (99)
T ss_dssp CCBSSCCEEEEEEEEC
T ss_pred CCCcceeEEEEEEEeC
Confidence 5889999999999987
No 43
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.77 E-value=1.9e-18 Score=133.33 Aligned_cols=91 Identities=27% Similarity=0.376 Sum_probs=81.4
Q ss_pred eeEEEecCCC--CCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC
Q psy6838 298 YAFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK 375 (442)
Q Consensus 298 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~ 375 (442)
+.+.|.||.+ .|+.|+++. +|+|.| |+.++|+|.++...+.|.|++.+|.|++.++||||....|.|+|+|+|+|.
T Consensus 5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~ 82 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET 82 (98)
T ss_dssp CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCC
Confidence 4678899985 899999997 999999 999999999765667899999999999999999999999999999999997
Q ss_pred -CCceEEEEEEEEEee
Q psy6838 376 -PMMSSTVTVYFNVVD 390 (442)
Q Consensus 376 -~~~~~~~~v~I~V~d 390 (442)
|+++++++|.|+|.|
T Consensus 83 ~~~l~~~~~v~I~V~D 98 (98)
T 1zxk_A 83 NKPLEPPSEFIIKVQD 98 (98)
T ss_dssp CCBSSCCEEEEEEECC
T ss_pred CCCcceeEEEEEEEEC
Confidence 779999999999986
No 44
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.74 E-value=1.2e-17 Score=128.96 Aligned_cols=90 Identities=28% Similarity=0.428 Sum_probs=82.8
Q ss_pred CeeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC-
Q psy6838 162 NETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG- 237 (442)
Q Consensus 162 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~- 237 (442)
..+.|+||.+ .|+.|+++. +|+|.| |+.++|+|.++. .+.|.|++.+|.|++.++||||....|.|+|.|+|+|
T Consensus 6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~ 83 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRT 83 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCC
Confidence 4678999976 689999999 999999 999999998865 3689999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEEe
Q psy6838 238 EPSKSSRTKFFIRLLD 253 (442)
Q Consensus 238 ~~~~~~~~~v~I~V~d 253 (442)
+|++++.+.|.|.|.|
T Consensus 84 ~p~l~~~~~v~I~V~D 99 (99)
T 1zvn_A 84 GRPMEPESEFIIKIQD 99 (99)
T ss_dssp CCBSSCCEEEEEEEEC
T ss_pred CCCcceeEEEEEEEeC
Confidence 5899999999999986
No 45
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=4.7e-19 Score=143.19 Aligned_cols=104 Identities=22% Similarity=0.194 Sum_probs=90.2
Q ss_pred CeeEeeCCCCCCcEEEEEEEEeCCCCCCceE---EEEEecCC-CCCeEecCcceEEEEcccCCcccc----cEEEEEEEE
Q psy6838 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYV---EYSIINSE-ATPFSLGPVDGLLRVAQKLDREIK----SNYTLEIKA 233 (442)
Q Consensus 162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~---~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~----~~~~l~V~a 233 (442)
+.++|+|+.++|+.|+++ |+|.|.+.+ .+ +|+|.++. ..+|.|++.+|.|++.++||||.. ..|.|.|.|
T Consensus 13 ~~~~V~E~~~~Gt~V~~v-a~D~d~~~~-~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a 90 (125)
T 1wyj_A 13 ITYSVLEETDRGSLVGNL-AKDLGLSLR-ELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQV 90 (125)
T ss_dssp CCEEECSSCCTTCEEEES-TTTTTCCHH-HHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEE
T ss_pred EEEEEECCCCCCCEEEEE-EecCCCCCC-ceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEEEE
Confidence 678999999999999999 999887643 34 89998754 678999999999999999999999 999999999
Q ss_pred EeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeec
Q psy6838 234 KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270 (442)
Q Consensus 234 ~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v 270 (442)
.+.. +. ..++|.|+|.|+|||+|.|....|.+++
T Consensus 91 ~~~~--p~-~~~~V~I~V~DvNDN~P~F~~~~y~vs~ 124 (125)
T 1wyj_A 91 LLKS--PV-QFIQGEIQLQDVNDHAPEFMEDESGPSS 124 (125)
T ss_dssp EETT--TT-EEECCCEEECCCCCCCCCCCCCCCCCCC
T ss_pred EECC--CC-eEEEEEEEEEEccCCCCcCCCcEEEEec
Confidence 9853 33 5789999999999999999999887653
No 46
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.73 E-value=1.1e-17 Score=129.62 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=81.5
Q ss_pred eeEEEecCCCC--CcEEEEEEEEeCCCCCCeEEEEEEEe----CCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEE
Q psy6838 298 YAFDVLEDLPR--GSRVGQVFTTDADEGVNGVVTYSVVS----DWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371 (442)
Q Consensus 298 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~i~y~l~~----~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~ 371 (442)
..+.|.||.+. |+.|+++.|+|+|. .++|+|.+ ++..+.|.|++.+|.|++.++||||....|.|+|.|+
T Consensus 5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 80 (99)
T 3k6d_A 5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETT 80 (99)
T ss_dssp CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEE
Confidence 35789999999 99999999999996 69999985 3445799999999999999999999999999999999
Q ss_pred ECCCCCceEEEEEEEEEee
Q psy6838 372 DTGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 372 D~~~~~~~~~~~v~I~V~d 390 (442)
|+|+|++++.++|.|+|.|
T Consensus 81 D~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6d_A 81 DENGKTIEGPVDLEILVID 99 (99)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred ECCCCceeeEEEEEEEEEC
Confidence 9999999999999999987
No 47
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.73 E-value=1.6e-17 Score=128.11 Aligned_cols=90 Identities=27% Similarity=0.416 Sum_probs=80.6
Q ss_pred CeeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838 162 NETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238 (442)
Q Consensus 162 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~ 238 (442)
+.+.|+||.+ .|+.|+++. +|+|.| |+.++|+|.+.. .+.|.|++.+|.|++.++||||....|.|+|.|+|+|.
T Consensus 5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~ 82 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET 82 (98)
T ss_dssp CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCC
Confidence 5678999995 899999997 999999 999999998875 45799999999999999999999999999999999997
Q ss_pred -CCCceeEEEEEEEEe
Q psy6838 239 -PSKSSRTKFFIRLLD 253 (442)
Q Consensus 239 -~~~~~~~~v~I~V~d 253 (442)
|++++.+.|.|.|.|
T Consensus 83 ~~~l~~~~~v~I~V~D 98 (98)
T 1zxk_A 83 NKPLEPPSEFIIKVQD 98 (98)
T ss_dssp CCBSSCCEEEEEEECC
T ss_pred CCCcceeEEEEEEEEC
Confidence 789999999999876
No 48
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.72 E-value=3.6e-17 Score=126.86 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=80.6
Q ss_pred eEEEecCCCC--CcEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE
Q psy6838 299 AFDVLEDLPR--GSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD 372 (442)
Q Consensus 299 ~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D 372 (442)
.+.|.||.+. |+.|++|.|+|+|. .++|+|.+. +..+.|.|++.||.|++.++||||....|.|+|+|+|
T Consensus 7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D 82 (100)
T 3k6f_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82 (100)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEE
Confidence 5789999998 89999999999996 589999853 3457999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEee
Q psy6838 373 TGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 373 ~~~~~~~~~~~v~I~V~d 390 (442)
+|+|++++.++|.|+|.|
T Consensus 83 ~g~p~l~~~~~v~I~V~D 100 (100)
T 3k6f_A 83 ASGKTLEGPVPLEVIVID 100 (100)
T ss_dssp TTCCEEEEEEEEEEEEEC
T ss_pred CCCCcccceEEEEEEEEC
Confidence 999999999999999987
No 49
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.72 E-value=5.5e-17 Score=125.66 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=80.3
Q ss_pred eEEEecCCCCC--cEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE
Q psy6838 299 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD 372 (442)
Q Consensus 299 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D 372 (442)
.+.|.||.+.| +.|++|.|+|+|. .++|+|.+. +..+.|.|++.+|.|++.++||||....|.|+|+|+|
T Consensus 6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D 81 (99)
T 3k6i_A 6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81 (99)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence 46889999986 8899999999996 699999853 3447999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEee
Q psy6838 373 TGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 373 ~~~~~~~~~~~v~I~V~d 390 (442)
+|+|++++.++|.|+|.|
T Consensus 82 ~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6i_A 82 LSGKIIDGPVRLDISVID 99 (99)
T ss_dssp TTSCEEEEEEEEEEEEEC
T ss_pred CCCCceeeeEEEEEEEEC
Confidence 999999999999999987
No 50
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.70 E-value=4.3e-17 Score=127.54 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=79.5
Q ss_pred eEEEecCCC--CCcEEEEEEEEeCCCCCCeEEEEEEEeCCC----CCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE
Q psy6838 299 AFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWA----NDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD 372 (442)
Q Consensus 299 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~----~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D 372 (442)
.+.|.||.+ .|+.|+++.| |. +.|+.++|+|.+++. .+.|.|++.+|.|++.++||||....|.|+|+|+|
T Consensus 10 ~~~V~En~~~~~~~~v~~v~A-d~--g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D 86 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQIKS-NK--DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS 86 (105)
T ss_dssp CCCEESSCCSSSSEEEEECEE-GG--GGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred CEEEeCCCCCCCCcEEEEEEC-CC--CCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence 467889998 5789999998 33 568999999997543 46899999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEeeC
Q psy6838 373 TGKPMMSSTVTVYFNVVDL 391 (442)
Q Consensus 373 ~~~~~~~~~~~v~I~V~dv 391 (442)
+|.|+++++++|.|+|.|+
T Consensus 87 ~g~p~~~~~~~v~I~V~Dv 105 (105)
T 2omz_B 87 SNGNAVEDPMEILITVTDQ 105 (105)
T ss_dssp TTSCBSSCCEEEEEEEEC-
T ss_pred CCCCceeeEEEEEEEEEeC
Confidence 9999999999999999986
No 51
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.69 E-value=1.1e-16 Score=123.92 Aligned_cols=88 Identities=22% Similarity=0.339 Sum_probs=80.8
Q ss_pred CeeEeeCCCCC--CcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838 162 NETTIPENSPL--NTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234 (442)
Q Consensus 162 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~ 234 (442)
..+.|+||.++ |+.|+++.|+|+|. .++|+|.+.. .+.|.|++.+|.|++.++||||....|.|.|.|+
T Consensus 5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 80 (99)
T 3k6d_A 5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETT 80 (99)
T ss_dssp CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEE
Confidence 46789999999 99999999999997 4999998632 4689999999999999999999999999999999
Q ss_pred eCCCCCCceeEEEEEEEEe
Q psy6838 235 DRGEPSKSSRTKFFIRLLD 253 (442)
Q Consensus 235 D~~~~~~~~~~~v~I~V~d 253 (442)
|+|+|++++.+.|+|.|.|
T Consensus 81 D~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6d_A 81 DENGKTIEGPVDLEILVID 99 (99)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred ECCCCceeeEEEEEEEEEC
Confidence 9999999999999999986
No 52
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.68 E-value=1.4e-16 Score=124.59 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=79.7
Q ss_pred eeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEe
Q psy6838 163 ETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD 235 (442)
Q Consensus 163 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D 235 (442)
.+.|+||.+ .|+.|+++.| | .+.|+.++|+|.++. .+.|.|++.+|.|++.++||||....|.|+|.|+|
T Consensus 10 ~~~V~En~~~~~~~~v~~v~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D 86 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQIKS-N--KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS 86 (105)
T ss_dssp CCCEESSCCSSSSEEEEECEE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred CEEEeCCCCCCCCcEEEEEEC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence 578999998 5889999999 3 357889999998865 25799999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEEeC
Q psy6838 236 RGEPSKSSRTKFFIRLLDE 254 (442)
Q Consensus 236 ~~~~~~~~~~~v~I~V~d~ 254 (442)
+|.|++++.+.|.|.|.|+
T Consensus 87 ~g~p~~~~~~~v~I~V~Dv 105 (105)
T 2omz_B 87 SNGNAVEDPMEILITVTDQ 105 (105)
T ss_dssp TTSCBSSCCEEEEEEEEC-
T ss_pred CCCCceeeEEEEEEEEEeC
Confidence 9999999999999999985
No 53
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.67 E-value=2.7e-16 Score=121.92 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=80.4
Q ss_pred CeeEeeCCCCC--CcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838 162 NETTIPENSPL--NTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234 (442)
Q Consensus 162 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~ 234 (442)
..+.|+||.+. |+.|++|.|+|+|. .++|+|.+.. .+.|.|++.+|.|++.++||||....|.|.|.|+
T Consensus 6 ~~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~ 81 (100)
T 3k6f_A 6 SPILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81 (100)
T ss_dssp CCEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred CcEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEE
Confidence 36789999998 89999999999997 3899998632 4689999999999999999999999999999999
Q ss_pred eCCCCCCceeEEEEEEEEe
Q psy6838 235 DRGEPSKSSRTKFFIRLLD 253 (442)
Q Consensus 235 D~~~~~~~~~~~v~I~V~d 253 (442)
|+|.|++++.++|.|.|.|
T Consensus 82 D~g~p~l~~~~~v~I~V~D 100 (100)
T 3k6f_A 82 DASGKTLEGPVPLEVIVID 100 (100)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred ECCCCcccceEEEEEEEEC
Confidence 9999999999999999986
No 54
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.67 E-value=3.7e-16 Score=120.96 Aligned_cols=87 Identities=23% Similarity=0.340 Sum_probs=80.0
Q ss_pred eeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEe
Q psy6838 163 ETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD 235 (442)
Q Consensus 163 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D 235 (442)
.+.|+||.+.| +.|++|.|+|+|. .++|+|.+.. .+.|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus 6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D 81 (99)
T 3k6i_A 6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81 (99)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence 57899999987 8999999999997 4999998642 36899999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEEe
Q psy6838 236 RGEPSKSSRTKFFIRLLD 253 (442)
Q Consensus 236 ~~~~~~~~~~~v~I~V~d 253 (442)
+|+|++++.++|.|.|.|
T Consensus 82 ~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6i_A 82 LSGKIIDGPVRLDISVID 99 (99)
T ss_dssp TTSCEEEEEEEEEEEEEC
T ss_pred CCCCceeeeEEEEEEEEC
Confidence 999999999999999986
No 55
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.49 E-value=5.4e-15 Score=115.15 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=75.9
Q ss_pred cceeEEEecCCCCCcEEEEEEEEeCCCCCC--eEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCc------EEEEE
Q psy6838 296 PVYAFDVLEDLPRGSRVGQVFTTDADEGVN--GVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVH------HYIFV 367 (442)
Q Consensus 296 ~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~--~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~------~~~l~ 367 (442)
..+.++|.|++++|+.|+++ |.|.|...+ ..++|+|.+++...+|.|++.||.|+++++||||... .|.+.
T Consensus 3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~ 81 (103)
T 1wuz_A 3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLE 81 (103)
T ss_dssp CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEE
T ss_pred eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEE
Confidence 45678999999999999999 999886422 3578999877778899999999999999999999752 45555
Q ss_pred EEEEECCCCCceEEEEEEEEEeeCCCC
Q psy6838 368 VQAQDTGKPMMSSTVTVYFNVVDLNDN 394 (442)
Q Consensus 368 V~a~D~~~~~~~~~~~v~I~V~dvNd~ 394 (442)
|.+ . .| + ..+.|.|+|.|+|||
T Consensus 82 v~~--~-~p-~-~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 82 VIV--D-RP-L-QVFHVEVEVRDINDN 103 (103)
T ss_dssp EEE--T-TT-T-EEEEEEEEEECCSCC
T ss_pred EEE--C-CC-C-EEEEEEEEEEEcCCC
Confidence 554 2 33 3 488999999999997
No 56
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.44 E-value=1.7e-14 Score=112.33 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=68.4
Q ss_pred CeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCC
Q psy6838 14 PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD 93 (442)
Q Consensus 14 ~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~ 93 (442)
..+..+|+|++++|+.|+++ |.|+|.+.+. ...++|+|..++
T Consensus 3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~-------------------------------------~~~~~y~i~~~~ 44 (103)
T 1wuz_A 3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTE-------------------------------------LVPRLFRVASKD 44 (103)
T ss_dssp CEEEEEEESSCCTTCBCCCH-HHHHTCCHHH-------------------------------------HTTTTBCCBCSS
T ss_pred eeEEEEEECCCCCCCEEEEE-EeccCCCCcc-------------------------------------cccEEEEEEeCC
Confidence 45788999999999999999 9998853210 012344444455
Q ss_pred CCCcEEEeCCccEEEEcccCCcccC----cEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCC
Q psy6838 94 DEEIFTINPSNGTLSNLKHLDRETK----SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDN 154 (442)
Q Consensus 94 ~~~~F~i~~~~g~l~~~~~lD~E~~----~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~ 154 (442)
..++|.|++.+|.|++.+.||||+. ..|.+.+.+... .| + ..+.|.|.|.|+|||
T Consensus 45 ~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~~-~p----~-~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 45 RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVD-RP----L-QVFHVEVEVRDINDN 103 (103)
T ss_dssp CSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEET-TT----T-EEEEEEEEEECCSCC
T ss_pred CccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEEC-CC----C-EEEEEEEEEEEcCCC
Confidence 5677888888888888888888875 233444444432 22 2 378999999999997
No 57
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=95.75 E-value=0.18 Score=43.03 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=64.8
Q ss_pred cCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccCCeeEeeCCC-C--CC-cEEEEEEEEeCCCCCCceE
Q psy6838 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENS-P--LN-TVVAALKAIDRDEGQNSYV 192 (442)
Q Consensus 117 ~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~v~E~~-~--~g-~~v~~v~a~D~D~~~~~~~ 192 (442)
....|+|+++|+|..|. .+....+.|+|.+ ..+|.... ..+.+. . .| .+-....|.|.|.. -.++
T Consensus 59 ~~G~htlta~A~D~aGn----~s~s~~v~vtV~~--~~~Ptv~i----tsP~~g~~~~~~~~vtl~~~AsD~~g~-V~~V 127 (190)
T 3pdd_A 59 AVGAYNLKAVAVLSDGR----RIESPVTPVLVKV--IVKPTVKL----TAPKSNVVAYGNEFLKITATASDSDGK-ISRV 127 (190)
T ss_dssp CSEEEEEEEEEEETTSC----EEECCCEEEEEEC--CCCCEEEE----EECCTTCCCBTTSEEEEEEEEECSSSC-EEEE
T ss_pred CCccEEEEEEEEECCCC----EeeecceeEEecc--CCCCceee----cCCCCCcEEecCCeEEEEEEEECCCCc-EEEE
Confidence 35689999999999874 2333457777776 44786532 222221 1 23 44556777776542 2335
Q ss_pred EEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEe
Q psy6838 193 EYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253 (442)
Q Consensus 193 ~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d 253 (442)
.|.+.+. ...-+. ++-....... ....|.|+++|+|..+. .+....|+|+|.+
T Consensus 128 e~~~dg~---~v~t~t-~~~y~~~~~~---~~G~~tl~a~A~D~aGn-~s~s~~vtvtv~~ 180 (190)
T 3pdd_A 128 DFLVDGE---VIGSDR-EAPYEYEWKA---VEGNHEISVIAYDDDDA-ASTPDSVKIFVKQ 180 (190)
T ss_dssp EEEETTE---EEEEEC-SSSEEEEEEC---CSEEEEEEEEEEETTCC-BCCCEEEEEEEBC
T ss_pred EEEECCE---EEeccc-CCCEEEEEec---CCeeEEEEEEEEECCCC-EEecceEEEEECC
Confidence 5555321 111111 1111111111 46789999999998753 3455667777653
No 58
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=94.37 E-value=0.26 Score=40.22 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEE
Q psy6838 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVV 368 (442)
Q Consensus 289 ~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V 368 (442)
..|-|.+..|...+.-...+|..+++|.-.|... +..+.|... ....|.|+.+ |.|++++.+..-. ..-.|.|
T Consensus 32 C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~ss---Dp~dFkV~~D-GtVya~r~v~L~~-~~~~F~V 104 (159)
T 1op4_A 32 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS---EPADFKVDED-GTVYAVRSFPLTA-EQAKFLI 104 (159)
T ss_dssp CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC---CSSEEEEETT-TEEEEESCCSCSS-SCEEEEE
T ss_pred ccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEcC---CCCCeEEeCC-CcEEEecceeecC-CCcEEEE
Confidence 3456666677666666777788888887788863 445667543 2237999987 9999998875433 3348899
Q ss_pred EEEECCC
Q psy6838 369 QAQDTGK 375 (442)
Q Consensus 369 ~a~D~~~ 375 (442)
.|.|...
T Consensus 105 ~a~D~~t 111 (159)
T 1op4_A 105 YAQDKET 111 (159)
T ss_dssp EEEETTT
T ss_pred EEEcCCC
Confidence 9999544
No 59
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=94.12 E-value=1.9 Score=36.53 Aligned_cols=30 Identities=20% Similarity=0.018 Sum_probs=21.7
Q ss_pred cCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838 360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 360 ~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d 390 (442)
..+.|+|+++|+|..+- .+....|.|+|.+
T Consensus 151 ~~G~~tl~a~A~D~aGn-~s~s~~vtvtv~~ 180 (190)
T 3pdd_A 151 VEGNHEISVIAYDDDDA-ASTPDSVKIFVKQ 180 (190)
T ss_dssp CSEEEEEEEEEEETTCC-BCCCEEEEEEEBC
T ss_pred CCeeEEEEEEEEECCCC-EEecceEEEEECC
Confidence 56799999999997663 3345667777654
No 60
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=93.67 E-value=1.6 Score=39.91 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=42.0
Q ss_pred EEEEEEEEEC-CCCCceEEEEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC--eeEEEEeeCC
Q psy6838 364 YIFVVQAQDT-GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG--KLPFLLPIGD 438 (442)
Q Consensus 364 ~~l~V~a~D~-~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~--~~~y~i~~~~ 438 (442)
-+|.|..+.. ++..+......+|+|.| ||.+|.|........|.|+. |...+.|.-.-.-.+ .+.|+...|.
T Consensus 91 EtF~v~Ls~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~~g~vtV~~~T~dGT 165 (298)
T 3rb5_A 91 ECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSGARGTVIVPYWTENDT 165 (298)
T ss_dssp EEEEEEEECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESCCCSCEEEEEEEEEC-
T ss_pred EEEEEEEeCCCCCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEecCCCCEEEEEEecCCc
Confidence 3455555553 22223333455666666 46689876666667899983 666556555544333 7888766653
No 61
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=92.69 E-value=5.8 Score=36.14 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=25.2
Q ss_pred cCCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC
Q psy6838 152 NDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE 200 (442)
Q Consensus 152 Nd~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~ 200 (442)
+|++..|... ....+.|+. |+.-..|.-.. +......+.|...++.
T Consensus 6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~g-~~~~~vtV~y~T~~GT 52 (298)
T 3rb5_A 6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGT 52 (298)
T ss_dssp -----CEEESSSEEEEETTS--CCEECCEEECS-CCSSCEEEEEEEEESS
T ss_pred CCCceEEEEeCCEEEEecCc--eEEEEEEEEEC-CCCccEEEEEEeeCCc
Confidence 3555666554 567899986 55544554332 3334456888877765
No 62
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=92.13 E-value=0.6 Score=35.14 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=34.7
Q ss_pred EEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838 107 LSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156 (442)
Q Consensus 107 l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P 156 (442)
|.+....|..+...|.++..++|..| ..++.+.+|+|.+..+..|
T Consensus 47 I~V~g~Vdt~k~G~Y~VtY~VtDs~G-----n~~t~trtVtV~~~~e~~~ 91 (103)
T 2kpn_A 47 IKVDGEVDTTKAGTYVLTYTVTDSKG-----HEVTAKQTVTVKVREEVKN 91 (103)
T ss_dssp CEEESCCCSSSCEEEEEEEEEECTTS-----CEEEEEEEEEEECSSCCCC
T ss_pred EEEeCcccCCCceEEEEEEEEEcCCC-----CEEEEEEEEEEeCCCcccC
Confidence 33345677778889999999999887 4678888999988666444
No 63
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=89.70 E-value=1.7 Score=41.64 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=48.6
Q ss_pred EeCCCCCCeEEEEEEEeCCCC----CCeEEe-CCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838 318 TDADEGVNGVVTYSVVSDWAN----DVFSIN-PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV 389 (442)
Q Consensus 318 ~D~D~~~~~~i~y~l~~~~~~----~~f~id-~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 389 (442)
+|+| ++.++|+-..-... ....|. .++..++.+.+-. +....|.|.++++|.+.|.+++..+|+|+|.
T Consensus 365 sDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV~ 437 (437)
T 2yhg_A 365 SDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINVQ 437 (437)
T ss_dssp BCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEEC
T ss_pred eCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEeC
Confidence 4887 56788877633222 255664 4445676665543 4567899999999999888999999999883
No 64
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.12 E-value=2.9 Score=31.27 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=27.6
Q ss_pred cCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCC
Q psy6838 360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLND 393 (442)
Q Consensus 360 ~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd 393 (442)
....|.|+++++|..+ .+++.+++|+|...+.
T Consensus 67 ~~G~y~f~LTVtD~~G--~s~s~~v~VtV~~~~~ 98 (102)
T 2yrl_A 67 QVGTYVFTLTVKDERN--LQSQSSVNVIVKEESG 98 (102)
T ss_dssp CSSEEEEEEEEEBTTC--CEEEEEEEEEEECCSS
T ss_pred CCeEEEEEEEEEeCCC--CEEEeEEEEEEcCCCC
Confidence 4679999999999876 7889999999998765
No 65
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=87.01 E-value=5.7 Score=32.32 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=57.1
Q ss_pred CCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcE
Q psy6838 6 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRL 85 (442)
Q Consensus 6 Dn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i 85 (442)
-+-|-|..+.|...++-+...|..+++|.-.|... +..+.|..
T Consensus 31 ~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~s----------------------------------- 73 (159)
T 1op4_A 31 LCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYES----------------------------------- 73 (159)
T ss_dssp CCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEEC-----------------------------------
T ss_pred cccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEc-----------------------------------
Confidence 35789999999888889999999999999998863 33454443
Q ss_pred EEEEEeCCCCC-cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCC
Q psy6838 86 EYSIVSGDDEE-IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAK 132 (442)
Q Consensus 86 ~y~i~~~~~~~-~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~ 132 (442)
.+. .|.|+ ..|.|.+.+++-.-. ..-.+.|.|.|...
T Consensus 74 --------sDp~dFkV~-~DGtVya~r~v~L~~-~~~~F~V~a~D~~t 111 (159)
T 1op4_A 74 --------SEPADFKVD-EDGTVYAVRSFPLTA-EQAKFLIYAQDKET 111 (159)
T ss_dssp --------CCSSEEEEE-TTTEEEEESCCSCSS-SCEEEEEEEEETTT
T ss_pred --------CCCCCeEEe-CCCcEEEecceeecC-CCcEEEEEEEcCCC
Confidence 123 67777 578888888764322 22378889999554
No 66
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=85.50 E-value=2.1 Score=32.10 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=37.0
Q ss_pred EEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCc
Q psy6838 349 IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPL 397 (442)
Q Consensus 349 ~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~ 397 (442)
.|.+....|....+.|.++..++|..+ ..++++.+|+|.+..+..|.
T Consensus 46 ~I~V~g~Vdt~k~G~Y~VtY~VtDs~G--n~~t~trtVtV~~~~e~~~~ 92 (103)
T 2kpn_A 46 KIKVDGEVDTTKAGTYVLTYTVTDSKG--HEVTAKQTVTVKVREEVKND 92 (103)
T ss_dssp GCEEESCCCSSSCEEEEEEEEEECTTS--CEEEEEEEEEEECSSCCCCC
T ss_pred eEEEeCcccCCCceEEEEEEEEEcCCC--CEEEEEEEEEEeCCCcccCC
Confidence 344456788888899999999999877 67888999999887664443
No 67
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=84.99 E-value=4.2 Score=38.92 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=45.6
Q ss_pred EeCCCCCCceEEEEEecC--C---CCCeEec-CcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEE
Q psy6838 182 IDRDEGQNSYVEYSIINS--E---ATPFSLG-PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRL 251 (442)
Q Consensus 182 ~D~D~~~~~~~~y~i~~~--~---~~~F~id-~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V 251 (442)
+|+|... ++|+-.-- . .....|. ..+..+.+..+-+ +....|+|.++++|.+.|++++..+|.|+|
T Consensus 365 sDPDGD~---LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV 436 (437)
T 2yhg_A 365 SDPDGDS---LNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV 436 (437)
T ss_dssp BCTTCCC---EEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred eCCCCCe---EEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence 4777433 77766433 2 1245563 3445666665544 456899999999999999999999998887
No 68
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.12 E-value=5.8 Score=29.60 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=27.0
Q ss_pred cCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccC
Q psy6838 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVND 153 (442)
Q Consensus 117 ~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd 153 (442)
....|.|++.++|..+ .+.+.++.|+|...+.
T Consensus 67 ~~G~y~f~LTVtD~~G-----~s~s~~v~VtV~~~~~ 98 (102)
T 2yrl_A 67 QVGTYVFTLTVKDERN-----LQSQSSVNVIVKEESG 98 (102)
T ss_dssp CSSEEEEEEEEEBTTC-----CEEEEEEEEEEECCSS
T ss_pred CCeEEEEEEEEEeCCC-----CEEEeEEEEEEcCCCC
Confidence 4569999999999987 5788999999987764
No 69
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=74.49 E-value=21 Score=26.35 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=39.2
Q ss_pred CcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEE
Q psy6838 173 NTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLL 252 (442)
Q Consensus 173 g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 252 (442)
+.+.....|.|.|.+ -.++.|.+.+.. ...+...-.- .. ++.. ...|.|+++|+|..+. ......+.|+|.
T Consensus 17 ~~v~i~a~A~D~dg~-V~kVef~vdg~~---vg~dt~apy~-~~--w~~~-~G~htl~a~AtD~~G~-~~tS~~v~vtV~ 87 (98)
T 3pe9_A 17 EFLKITATASDSDGK-ISRVDFLVDGEV---IGSDREAPYE-YE--WKAV-EGNHEISVIAYDDDDA-ASTPDSVKIFVK 87 (98)
T ss_dssp SEEEEEEEECCSSSC-EEEEEEEETTEE---EEEECSSSEE-EE--EECC-SEEEEEEEEEEETTCC-BCCCEEEEEEEE
T ss_pred CEEEEEEEEEeCCCC-EEEEEEEECCEE---ecccccCCEE-EE--EEcC-CccEEEEEEEEECCCC-EEeeeEEEEEEC
Confidence 345566777777642 345777765432 1111111100 00 1111 5889999999998753 334566777775
Q ss_pred e
Q psy6838 253 D 253 (442)
Q Consensus 253 d 253 (442)
+
T Consensus 88 ~ 88 (98)
T 3pe9_A 88 Q 88 (98)
T ss_dssp C
T ss_pred c
Confidence 3
No 70
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=73.23 E-value=7.9 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838 357 DYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV 389 (442)
Q Consensus 357 d~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 389 (442)
-|.....|.++++++|..+ .+.+.++.|+|.
T Consensus 54 ty~~~G~Y~v~LtVtd~~G--~~~t~~~~V~V~ 84 (85)
T 2y72_A 54 AYKKAGTYNVTLKVTDDKG--ATATESFTIEIK 84 (85)
T ss_dssp ECSSCEEEEEEEEEEETTS--CEEEEEEEEEEE
T ss_pred EcCCCeEEEEEEEEEECCC--CEEEEEEEEEEc
Confidence 4667889999999999876 567777777775
No 71
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=69.67 E-value=23 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=3.5
Q ss_pred EEEEeeCCCCCCccCCCCCeeEEecC
Q psy6838 385 YFNVVDLNDNPPLFDPMPPNIPVYEN 410 (442)
Q Consensus 385 ~I~V~dvNd~~P~f~~~~~~~~v~E~ 410 (442)
+|+|.|- |.+|.|........|.|+
T Consensus 108 tvtI~dd-D~~g~~~f~~~~~~V~E~ 132 (137)
T 3ead_A 108 TVMILDD-DHAGIFAFTDSVFEITES 132 (137)
T ss_dssp EEEEECC-C-----------------
T ss_pred EEEEECC-CCCCEEEECCCcEEEecc
Confidence 3344443 557776554445566666
No 72
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A
Probab=66.86 E-value=73 Score=28.70 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=34.1
Q ss_pred EEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCC-CC-eeEEEEeeCC
Q psy6838 382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD-SG-KLPFLLPIGD 438 (442)
Q Consensus 382 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D-~~-~~~y~i~~~~ 438 (442)
...+|+|.|- |++|.|........|.|+ .|...+.|.-+-.- .. .+.|+..+|.
T Consensus 128 ~~atVtI~Dd-D~agv~sf~~~~~~V~E~--~G~~~v~V~Rs~~~~g~VtV~y~T~~GT 183 (295)
T 3us9_A 128 STATVTIFDD-DHAGIFTFEEPVTHVSES--IGIMEVKVLRTSGARGNVIVPYKTIEGT 183 (295)
T ss_dssp CEEEEEEECC-CCCCEEEESCSEEEEESC--SSEEEEEEEEESCCCSCEEEEEEEECCS
T ss_pred ceeEEEEccc-ccccccccCCCeEEEecC--CCeEEEEEEEEcCCCccEEEEEEecCCC
Confidence 4556666664 778887655556788998 46665555544433 33 7788776653
No 73
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=65.96 E-value=13 Score=26.40 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=24.1
Q ss_pred cccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEE
Q psy6838 115 RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIR 149 (442)
Q Consensus 115 ~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~ 149 (442)
|.....|++++.++|..+ .+.+.++.|+|.
T Consensus 55 y~~~G~Y~v~LtVtd~~G-----~~~t~~~~V~V~ 84 (85)
T 2y72_A 55 YKKAGTYNVTLKVTDDKG-----ATATESFTIEIK 84 (85)
T ss_dssp CSSCEEEEEEEEEEETTS-----CEEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEECCC-----CEEEEEEEEEEc
Confidence 556789999999999887 466777777775
No 74
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=62.41 E-value=34 Score=29.74 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=43.1
Q ss_pred EEEEEEe---CCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEEC---CCCCceEEEEEEEEEe--eCCC
Q psy6838 328 VTYSVVS---DWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVV--DLND 393 (442)
Q Consensus 328 i~y~l~~---~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~---~~~~~~~~~~v~I~V~--dvNd 393 (442)
.+|++.. +....|...|+.++.+.=. ++ -...+.|.+.|+|++. |.....++..+.|.|. |.||
T Consensus 33 ~~y~vt~a~g~~LPsWL~fd~~t~TfsG~-P~-~~D~G~~~i~VtA~~~~~~g~~~~~asdvF~I~V~ped~~e 104 (246)
T 1u2c_A 33 EIIKVSAAGKEALPSWLHWDPHSHILEGL-PL-DTDKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPEDHNE 104 (246)
T ss_dssp EEEEEEETTSSSCCTTEEEETTTTEEEEC-CC-GGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESSCCC-
T ss_pred cEEEEEecCCCCCCcceEEcCCCCeEEec-cC-CCCcceEEEEEEEeeccCCCCccccccceEEEEEecCCCcc
Confidence 4555542 2456899999999976533 33 3567899999999864 2223456778888888 6665
No 75
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=59.72 E-value=61 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=22.2
Q ss_pred CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC
Q psy6838 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE 200 (442)
Q Consensus 162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~ 200 (442)
....+.|+. |+...+|.-.- +......+.|+..++.
T Consensus 12 ~~y~V~E~~--g~~~v~V~R~g-~~~~~v~V~y~t~~gT 47 (137)
T 3ead_A 12 GHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGT 47 (137)
T ss_dssp CEEEEEGGG--CEEEEEEEEES-CCSSCEEEEEEEECSS
T ss_pred CEEEEECCC--eEEEEEEEEEC-CCCceEEEEEEeECCC
Confidence 566788875 55555554432 3334456888887776
No 76
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=52.63 E-value=66 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=21.7
Q ss_pred CcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEe
Q psy6838 118 KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150 (442)
Q Consensus 118 ~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~d 150 (442)
...|+|+++|+|..|.. ..+..|.|+|.+
T Consensus 60 ~G~htl~a~AtD~~G~~----~tS~~v~vtV~~ 88 (98)
T 3pe9_A 60 EGNHEISVIAYDDDDAA----STPDSVKIFVKQ 88 (98)
T ss_dssp SEEEEEEEEEEETTCCB----CCCEEEEEEEEC
T ss_pred CccEEEEEEEEECCCCE----EeeeEEEEEECc
Confidence 57899999999998853 345566777654
No 77
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=50.90 E-value=59 Score=28.25 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC---CCCCceeEEEEEEEE--eCCC
Q psy6838 201 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG---EPSKSSRTKFFIRLL--DEND 256 (442)
Q Consensus 201 ~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~---~~~~~~~~~v~I~V~--d~nd 256 (442)
..|...|+.++.+.- -+++. ....|.++|.|++.+ .....+...+.|.|. |.|+
T Consensus 46 PsWL~fd~~t~TfsG-~P~~~-D~G~~~i~VtA~~~~~~g~~~~~asdvF~I~V~ped~~e 104 (246)
T 1u2c_A 46 PSWLHWDPHSHILEG-LPLDT-DKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPEDHNE 104 (246)
T ss_dssp CTTEEEETTTTEEEE-CCCGG-GCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESSCCC-
T ss_pred CcceEEcCCCCeEEe-ccCCC-CcceEEEEEEEeeccCCCCccccccceEEEEEecCCCcc
Confidence 689999998986653 34443 457799999998652 223445677888888 6655
No 78
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A
Probab=46.10 E-value=1.7e+02 Score=26.32 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred eeccCCeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC
Q psy6838 157 EFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE 200 (442)
Q Consensus 157 ~f~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~ 200 (442)
.|-......|.|+. |+.-.+|.-...+......+.|+..++.
T Consensus 12 ~~f~~~~y~V~E~~--G~v~vtV~R~gG~~~~~v~V~y~T~dGT 53 (295)
T 3us9_A 12 IFFEQGTYQCLENC--GTVALTIIRRGGDLTNTVFVDFRTEDGT 53 (295)
T ss_dssp EEESCSEEEEEGGG--SCEEEEEEEEESSCCSCEEEEEEEEESS
T ss_pred EEecCCeEEEecCc--eEEEEEEEEecCCCCceEEEEEEeeCCc
Confidence 34455677888987 6666666555434444556889887775
No 79
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=45.04 E-value=66 Score=33.10 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=47.8
Q ss_pred EEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEeCCC
Q psy6838 177 AALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDEND 256 (442)
Q Consensus 177 ~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd 256 (442)
..+.|.+--.+..-...|+|.+-+..|-.+......+..+ .| ....|+|.|+|.+..+.-.....++.|.|.
T Consensus 676 i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~yt-nL---~pG~Y~f~V~a~~~~g~w~~~~~~l~I~I~---- 747 (758)
T 3ott_A 676 FELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYS-NL---SYGNYQLIISKLERDGQPSNRPHILNIRIL---- 747 (758)
T ss_dssp EEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEEC-SC---CSEEEEEEEEEBCTTSCBCSSCEEEEEEEC----
T ss_pred EEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEec-CC---CCccEEEEEEEeCCCCCccCccEEEEEEEC----
Confidence 4455555444445568888887766666554333344332 23 358999999999977532334567777774
Q ss_pred CCCeeec
Q psy6838 257 NNPIFDS 263 (442)
Q Consensus 257 ~~P~f~~ 263 (442)
||....
T Consensus 748 -Pp~~~~ 753 (758)
T 3ott_A 748 -PPWLEH 753 (758)
T ss_dssp -CGGGGG
T ss_pred -Ccchhh
Confidence 665543
No 80
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=33.45 E-value=2.3e+02 Score=24.34 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=15.2
Q ss_pred ccccEEEEEEEEEeCCCCCC
Q psy6838 222 EIKSNYTLEIKAKDRGEPSK 241 (442)
Q Consensus 222 e~~~~~~l~V~a~D~~~~~~ 241 (442)
+....|.|.|.|....+.+.
T Consensus 165 ~p~t~Y~~~V~A~n~~g~g~ 184 (290)
T 3l5i_A 165 AESKCYLITVTPVYADGPGS 184 (290)
T ss_dssp CTTCEEEEEEEEEETTEECC
T ss_pred CCccEEEEEEEEEeCCcccc
Confidence 45678999999999765333
No 81
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=32.77 E-value=1.2e+02 Score=31.18 Aligned_cols=72 Identities=6% Similarity=0.061 Sum_probs=43.1
Q ss_pred EEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838 313 GQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV 389 (442)
Q Consensus 313 ~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 389 (442)
..+.|-+--.+......|+|. |-...|..+......++.+ .| ..+.|+|.|+|++..+.-....+++.|+|.
T Consensus 676 i~f~~l~y~~~~~~~y~Y~L~-G~d~~W~~~~~~~~~~~yt-nL---~pG~Y~f~V~a~~~~g~w~~~~~~l~I~I~ 747 (758)
T 3ott_A 676 FELSDLPYSLDEKNKFVYRLE-GMDKEWNFLKSNINRITYS-NL---SYGNYQLIISKLERDGQPSNRPHILNIRIL 747 (758)
T ss_dssp EEEECCCTTCSSCCCEEEEEE-TTCSSCEECCTTCCEEEEC-SC---CSEEEEEEEEEBCTTSCBCSSCEEEEEEEC
T ss_pred EEEEcccCCCCccCeEEEEec-CCCCCccCCCCCcceEEec-CC---CCccEEEEEEEeCCCCCccCccEEEEEEEC
Confidence 333444433344556788887 4345565554333344432 33 457999999999976643344677888875
No 82
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=32.61 E-value=2e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCC
Q psy6838 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN 392 (442)
Q Consensus 356 ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvN 392 (442)
.-|...+.|+++++++|..+ .+++.+..|+|....
T Consensus 63 htY~~~GtYtVtLTVtD~~G--~s~t~t~~ItV~~~~ 97 (260)
T 2c4x_A 63 YKYKNPGTYKVKLIVTDNQG--ASSSFTATIKVTSAT 97 (260)
T ss_dssp ECCSSCEEEEEEEEEEETTS--CEEEEEEEEEEBCSS
T ss_pred EEeCCCEEEEEEEEEEeCCC--CeEEEEEEEEECCCC
Confidence 45778899999999999876 466778888887653
No 83
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=32.38 E-value=74 Score=22.33 Aligned_cols=29 Identities=14% Similarity=-0.012 Sum_probs=21.2
Q ss_pred CccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838 358 YEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV 389 (442)
Q Consensus 358 ~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 389 (442)
|...+.|+++++++++++ ++.+...|+|.
T Consensus 51 Y~~~G~YtV~Ltv~~g~~---~~~a~~~V~V~ 79 (80)
T 1b4r_A 51 YVLPGRYHVTAVLALGAG---SALLGTDVQVE 79 (80)
T ss_dssp ECSSEEEEEEEEEECSSC---EEEEEEEEEEB
T ss_pred CCCCcEEEEEEEEEeCCc---eEEEEEEEEEE
Confidence 667789999999995543 56666666663
No 84
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=28.56 E-value=3e+02 Score=24.10 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=25.8
Q ss_pred CCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEeC
Q psy6838 219 LDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 254 (442)
Q Consensus 219 lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~ 254 (442)
.-|.....|.+++.++|..+ .+.+.+..|+|...
T Consensus 63 htY~~~GtYtVtLTVtD~~G--~s~t~t~~ItV~~~ 96 (260)
T 2c4x_A 63 YKYKNPGTYKVKLIVTDNQG--ASSSFTATIKVTSA 96 (260)
T ss_dssp ECCSSCEEEEEEEEEEETTS--CEEEEEEEEEEBCS
T ss_pred EEeCCCEEEEEEEEEEeCCC--CeEEEEEEEEECCC
Confidence 34667889999999999873 45667777887653
No 85
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=27.89 E-value=2.6e+02 Score=28.73 Aligned_cols=76 Identities=9% Similarity=0.131 Sum_probs=0.0
Q ss_pred CcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEE
Q psy6838 309 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNV 388 (442)
Q Consensus 309 g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V 388 (442)
...-..+.|-+-..+..-...|+|. |-...|-......-.-...=+. +.|+|.|+|++..+.-....+++.|+|
T Consensus 707 n~~~i~fs~l~y~~~~~~~y~YrL~-G~d~~W~~~~~~~~~~ytnL~p-----G~Y~f~V~a~n~~g~w~~~~~~l~i~I 780 (795)
T 4a2l_A 707 TAFSIEFVVSNYISGQHNTFAYKLE-GYDKEWYYLTDSRTVSYSNLPQ-----GTYQFLVKAANSDGKWNPIPTALEIIV 780 (795)
T ss_dssp CEEEEEEEECCTTTTTCCEEEEEEE-TTCSSCEEESSCCEEEEECCCS-----EEEEEEEEEECTTSCBCSSCEEEEEEE
T ss_pred cEEEEEEEEccCCCccccEEEEEEe-CCCCCccCCCCcCeEEecccCC-----CeEEEEEEEECCCCccCCCceEEEEEE
Q ss_pred ee
Q psy6838 389 VD 390 (442)
Q Consensus 389 ~d 390 (442)
..
T Consensus 781 ~P 782 (795)
T 4a2l_A 781 LP 782 (795)
T ss_dssp CC
T ss_pred EC
No 86
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A 1z2k_A
Probab=27.34 E-value=1.4e+02 Score=22.42 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=33.9
Q ss_pred CCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838 339 DVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 339 ~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d 390 (442)
+.|.++.++|.|... ..--|..+.|-|.| ++..+ ...+..+.+.|.|
T Consensus 66 ~r~~fd~~n~AL~I~-~vQ~eDSg~Y~LeV--t~~tG--~v~~~~fql~VfD 112 (112)
T 2ptt_B 66 DIYGFDYGDFALSIK-SAKLQDSGHYLLEI--TNTGG--KVCNKNFQLLILD 112 (112)
T ss_dssp GTEEECTTTCCEEES-SCCGGGCEEEEEEE--ECTTC--BEEEEEEEEEEC-
T ss_pred CEEEEecCCcEEEEE-ecCcccCceEEEEE--ecCCC--cEEEEEEEEEeeC
Confidence 568888888988764 44457788999988 44433 5778888888865
No 87
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=24.64 E-value=69 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.9
Q ss_pred CccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838 358 YEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV 389 (442)
Q Consensus 358 ~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 389 (442)
|+..+.|.+++.|.+..+ ++++.+.|+|.
T Consensus 90 Y~~~GiyrVt~~AeN~~G---~d~a~l~l~Vt 118 (123)
T 1wgo_A 90 YESPGIYRVSVRAENTAG---HDEAVLFVQVS 118 (123)
T ss_dssp CSSCSCEEEEEEEECSSC---EEEEEEEECBC
T ss_pred EeCCCEEEEEEEEEccCC---ceeEEEEEEEe
Confidence 777889999999999876 78888888875
No 88
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A
Probab=24.54 E-value=2.7e+02 Score=22.26 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=28.5
Q ss_pred EeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838 318 TDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV 389 (442)
Q Consensus 318 ~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 389 (442)
...+.+..-.+.|+...+.+..--...+.+|.|....- |. .-.+.|...|...+ ...-++.|.+.
T Consensus 48 ~~G~~~~~v~V~y~T~dGTA~~g~Dy~~~~gtl~F~~G---et--~k~i~V~IidD~~~--E~~EtF~v~Ls 112 (160)
T 3gin_A 48 RGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPG---ET--QKEIRVGIIDDDIF--EEDKNFLVHLS 112 (160)
T ss_dssp ESSCTTSCEEEEEEEEESSSCBTTTBCCCEEEEEECTT---CC--EEEEEEEBCCCSCC--CCCEEEEEEEE
T ss_pred ccCCCCcEEEEEEEEECCcccCCCCccccceEEEEcCC---cE--EEEEEEEEECCCCc--cCceEEEEEEC
Confidence 43343334567888776543321111123466554321 22 33445555554442 23344445444
No 89
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.88 E-value=1.7e+02 Score=22.04 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=26.7
Q ss_pred CccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838 346 QSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 346 ~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d 390 (442)
..+.+.+. .| ..+.|.|.|.++|..+ .....+.|+|+.
T Consensus 68 ~~~tlkLS-~L---~eG~Y~FqltVtd~~~---~ge~~vnVTV~P 105 (113)
T 2e7m_A 68 HKQTLNLS-QL---SVGLYVFKVTVSSENA---FGEGFVNVTVKP 105 (113)
T ss_dssp SSSEEEEC-SC---CSEEEEECCEEEETTE---EEECCEEEEEEC
T ss_pred CCCeeEec-Cc---CcEEEEEEEEEECCCC---CccceEEEEEcC
Confidence 34566654 33 4589999999999765 566677777765
No 90
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=21.50 E-value=1.8e+02 Score=29.89 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=38.9
Q ss_pred EEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEE
Q psy6838 178 ALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLL 252 (442)
Q Consensus 178 ~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~ 252 (442)
.+.|.+-..+..-...|+|.+-+..|-.... ...+..+ .| ....|+|.|+|++..+.-....+++.|.|.
T Consensus 706 ~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~-~~~~~yt-nL---~pG~Y~f~V~a~~~~g~w~~~~~~l~i~I~ 775 (781)
T 3v9f_A 706 TFNVQDYSLANQVEYAYMLKGLENSWYTINE-QNSVTFR-NI---PPGKYEFLVKARLHNQDWSEDTTSLRIHIN 775 (781)
T ss_dssp EEECSCSGGGGGEEEEEEEETTEEEEEEESS-CSEEEEC-SC---CSEEEEEEEEEEETTSCCCSCCEEEEEEEC
T ss_pred EEEecCCCCccccEEEEEecCCCCCccCcCC-cceEEEc-CC---CCceEEEEEEEECCCCccCCCceEEEEEEc
Confidence 3444443333444566777665544444432 2333322 22 357999999999987532334566777774
No 91
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=20.13 E-value=1.6e+02 Score=23.21 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCccCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390 (442)
Q Consensus 356 ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d 390 (442)
--|...+.|+++++|+|..+ ....+..+.|+.
T Consensus 108 htY~~~G~YtVtLtvtn~~G---~~~~t~~~~i~~ 139 (145)
T 2kzw_A 108 HTFFNEGEYIVSLIVSNEND---SDSASVTIRALE 139 (145)
T ss_dssp ECCSSCEEEEEEEEEECSSC---EEEEEEEEEEEC
T ss_pred EEcCCCcEEEEEEEEEcCCC---CeeEEEeeeeee
Confidence 34677899999999999776 556666666664
No 92
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=20.04 E-value=1.9e+02 Score=20.20 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=20.2
Q ss_pred cccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEE
Q psy6838 115 RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIR 149 (442)
Q Consensus 115 ~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~ 149 (442)
|.....|++++.++++.+ ++.+...|+|.
T Consensus 51 Y~~~G~YtV~Ltv~~g~~------~~~a~~~V~V~ 79 (80)
T 1b4r_A 51 YVLPGRYHVTAVLALGAG------SALLGTDVQVE 79 (80)
T ss_dssp ECSSEEEEEEEEEECSSC------EEEEEEEEEEB
T ss_pred CCCCcEEEEEEEEEeCCc------eEEEEEEEEEE
Confidence 556788999999995543 55666666653
Done!