RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6838
(442 letters)
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 307 bits (788), Expect = 1e-99
Identities = 118/445 (26%), Positives = 184/445 (41%), Gaps = 93/445 (20%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT---------------- 141
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDR 115
N + Y+IVS D E +FT+N G +S L LDR
Sbjct: 142 --------------------YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNT 174
E+ +Y LVV A D+ LS+T + I ++D+NDNAP F + + +PEN N
Sbjct: 182 ESYPTYTLVVQAADLQGEG---LSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-NA 237
Query: 175 VVAALKAIDRDEGQN--SYVEYSIINSEATPFSLGP----VDGLLRVAQKLDREIKSNYT 228
+A LK D D Y+++N F + DG+L+ A+ LD E K Y
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYI 297
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L ++ ++ S +A+V + V D N+
Sbjct: 298 LHVRVENEEPFEGSLVPS--------------------TATV---------TVDVVDVNE 328
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
P+F +V ED G + + D ++ +TY + D AN INP++G
Sbjct: 329 A-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN-WLEINPETG 386
Query: 349 IFTLTAKLDYEDVHH-----YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPP 403
A++D ED H Y+ ++ A D G P+ + T T+ ++D+NDN P+ + P
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPE--PR 444
Query: 404 NIPVYENVTLGTGLASVHAVDLDSG 428
N+ + + +D D
Sbjct: 445 NMQFCQRNPQPHI---ITILDPDLP 466
Score = 254 bits (650), Expect = 5e-79
Identities = 96/433 (22%), Positives = 154/433 (35%), Gaps = 93/433 (21%)
Query: 15 VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL 74
+ E+ G + ++ V YS+ A+
Sbjct: 4 IPPISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADK----------------- 45
Query: 75 DYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP 134
+F I G L + LDRE + Y L A
Sbjct: 46 ------------------PPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA 87
Query: 135 QKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNS 190
+ ++ I + D NDN PEF E ++ E + T V + A D D+ N+
Sbjct: 88 ---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 191 YVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSR 244
+ Y+I++ + F++ G++ V LDRE YTL ++A D S+
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 245 TKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLE 304
K I + D NDN P+F+ +Y VPEN V A + +
Sbjct: 205 AKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLK-------------------- 243
Query: 305 DLPRGSRVGQVFTTDADEGVNG--VVTYSVVSDWANDVFSINP----QSGIFTLTAKLDY 358
TD D Y+VV+D + F + GI LD+
Sbjct: 244 ------------VTDDDAPNTPAWKAVYTVVND-PDQQFVVVTDPTTNDGILKTAKGLDF 290
Query: 359 EDVHHYIFVVQAQDTG---KPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGT 415
E YI V+ ++ ++ ST TV +VVD+N+ P+F P + V E+ +G
Sbjct: 291 EAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQ 349
Query: 416 GLASVHAVDLDSG 428
+ S A + D+
Sbjct: 350 EITSYTAREPDTF 362
Score = 234 bits (598), Expect = 2e-71
Identities = 79/410 (19%), Positives = 127/410 (30%), Gaps = 91/410 (22%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+PVF+ Y V E+ +R+ + TD D
Sbjct: 211 VKDINDNAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTP---------------- 253
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
+ Y++V D ++ F + G L K LD E
Sbjct: 254 ---------------------AWKAVYTVV-NDPDQQFVVVTDPTTNDGILKTAKGLDFE 291
Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
K Y L V + + ST V++ + DVN+ AP F+ A +PE+ +
Sbjct: 292 AKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQE 350
Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE-----IKSNYTLE 230
+ + A + D + + Y I A + P G + ++DRE S Y
Sbjct: 351 ITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVAL 410
Query: 231 IKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNS 290
I A D G P + + LLD NDN PI + ++ T+
Sbjct: 411 IIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITI---------- 460
Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG-VVTYSVVSDWA-NDVFSINPQSG 348
D D N T + + N N +
Sbjct: 461 ---------------------------LDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQ 493
Query: 349 IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
+ ++ Y ++ D +T+ V +V D
Sbjct: 494 ESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDV--HVCDCEGTVNNC 541
Score = 170 bits (432), Expect = 2e-47
Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 48/269 (17%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D N+ P+F +V ED G + + D ++ +TY + D AN
Sbjct: 323 VVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN-WLE 380
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
INP++G A++D ED S+
Sbjct: 381 INPETGAIFTRAEMDREDAEHV----------------------------------KNST 406
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
Y +++ATD P + T + +V+ DVNDNAP + +P ++
Sbjct: 407 YVALIIATDDGSPI---ATGTGTLLLVLLDVNDNAPIP-EPRNMQFCQRNPQPHIIT--- 459
Query: 181 AIDRDEGQNSY-VEYSIINSEATPFSLGPVD--GLLRVAQKLDREIKSNYTLEIKAKDRG 237
+D D N+ + + + +++ D + Q Y + +K D
Sbjct: 460 ILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQ 519
Query: 238 EPSKSSRTKFFIRLLDENDNNPIFDSKSY 266
+ + + + D +
Sbjct: 520 NKDQVTTLD--VHVCDCEGTVNNCMKAHH 546
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 300 bits (771), Expect = 6e-97
Identities = 114/446 (25%), Positives = 174/446 (39%), Gaps = 89/446 (19%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS----DW 54
V D NDN P F V+ V E G+ V V DAD+ +NG++ Y ++S
Sbjct: 98 VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTP 157
Query: 55 ANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
+ ++F+IN ++G +I T+ LD
Sbjct: 158 SPNMFTINNETG-----------------------------DIITVAAG---------LD 179
Query: 115 RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLN 173
RE Y L++ ATDM P LS+T I + DVNDN PEF +PEN +
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-D 238
Query: 174 TVVAALKAIDRDEGQN--SYVEYSII-NSEATPFSLGPV----DGLLRVAQKLDREIKSN 226
+VA L D+D+ Y I F++ DGL+ V + +D E
Sbjct: 239 VIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRM 298
Query: 227 YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDT 286
+ L + A+++ +K + +A+V + V D
Sbjct: 299 FVLTVAAENQVPLAKGIQHPP-----------------QSTATV---------SVTVIDV 332
Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 346
N+N P F+ E L G+ + + D D + + Y+ +SD AN I+P
Sbjct: 333 NEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN-WLKIDPV 390
Query: 347 SGIFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMP 402
+G T A LD E + Y A D G P MS T T+ ++D+NDN P +P
Sbjct: 391 NGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQV--LP 448
Query: 403 PNIPVYENVTLGTGLASVHAVDLDSG 428
E ++ A+D D
Sbjct: 449 QEAETCETP--EPNSINITALDYDID 472
Score = 246 bits (629), Expect = 7e-76
Identities = 105/435 (24%), Positives = 161/435 (37%), Gaps = 97/435 (22%)
Query: 18 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
++ E+ G ++ +D N + YSV A+
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQ-------------------- 45
Query: 78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
IF INP +G LS K LDRE + ++L A D+
Sbjct: 46 ---------------PPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 87
Query: 138 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 194
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N + Y
Sbjct: 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 195 SIINSEATP-----FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSK---SSRT 245
I++ + F++ G + VA LDRE YTL I+A D S+
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207
Query: 246 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLED 305
I + D NDN P F + ++ VPEN V V ++
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLT--------------------- 245
Query: 306 LPRGSRVGQVFTTDADEGVNG--VVTYSVVSDWANDVFSI----NPQSGIFTLTAKLDYE 359
TD D+ Y + F+I N G+ T+ +D+E
Sbjct: 246 -----------VTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE 294
Query: 360 DVHHYIFVVQAQDTG------KPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTL 413
++ V A++ + ST TV V+D+N+NP F P P I E +
Sbjct: 295 TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPY-FAPNPKIIRQEEGLHA 353
Query: 414 GTGLASVHAVDLDSG 428
GT L ++ A D D
Sbjct: 354 GTMLTTLTAQDPDRY 368
Score = 242 bits (620), Expect = 1e-74
Identities = 84/416 (20%), Positives = 125/416 (30%), Gaps = 91/416 (21%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F+ + +V E+ V + TD D+
Sbjct: 213 VTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTP---------------- 255
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
Y I GD F I G ++ +K +D E
Sbjct: 256 ---------------------AWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE 294
Query: 117 TKSSYNLVVMATDMAKPPQK---RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPL 172
T + L V A + + ST VS+ + DVN+N P F E
Sbjct: 295 TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHA 353
Query: 173 NTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE----IKSNYT 228
T++ L A D D + Y+ ++ A + PV+G + LDRE + Y
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
A D G P S I LLD NDN P A E + +
Sbjct: 414 ATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNSINITA----- 466
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG---VVTYSVVSDWANDVFSINP 345
D D N + ++IN
Sbjct: 467 -----------------------------LDYDIDPNAGPFAFDLPLSPVTIKRNWTINR 497
Query: 346 QSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP 400
+G L K+ + + Y + D+G P S+ + V + N D
Sbjct: 498 LNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDV 553
Score = 182 bits (465), Expect = 4e-52
Identities = 59/273 (21%), Positives = 102/273 (37%), Gaps = 48/273 (17%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D N+N P F+ E L G+ + + D D + + Y+ +SD AN
Sbjct: 329 VIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN-WLK 386
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
I+P +G T A LD E +
Sbjct: 387 IDPVNGQITTIAVLDRESP-----------------------------------NVKNNI 411
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
YN +A+D PP +S T + I + D+NDNAP+ + E E N++ +
Sbjct: 412 YNATFLASDNGIPP---MSGTGTLQIYLLDINDNAPQVLP-QEAETCETPEPNSIN--IT 465
Query: 181 AIDRDEGQNSY-VEYSIINSEAT---PFSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD 235
A+D D N+ + + S T +++ ++G ++ K+ Y + I D
Sbjct: 466 ALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITD 525
Query: 236 RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
G P KS+ + +++ + N D +
Sbjct: 526 SGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 298 bits (765), Expect = 4e-96
Identities = 114/444 (25%), Positives = 166/444 (37%), Gaps = 92/444 (20%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P F++ V+ V E + G++V V TD D+ ++
Sbjct: 104 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS---------------- 147
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD----DEEIFTINPSNGTLS-NLKHLDR 115
NG L YSI+ D +FTIN G +S LDR
Sbjct: 148 --------------------LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNT 174
E Y L V ATD+ LS + I I D NDNAP F +PEN
Sbjct: 188 EKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GF 243
Query: 175 VVAALKAIDRDEGQN--SYVEYSIINSEATPFSLGP----VDGLLRVAQKLDREIKSNYT 228
V L D D Y I +E F++ G+L A+ LD E++ Y
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L+I ++ S T +A+V + V D N+
Sbjct: 304 LQITVENAEPFSVPLPTS--------------------TATV---------TVTVEDVNE 334
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
P F V DV EDL RG ++ + D D+ ++Y + +D A ++N +G
Sbjct: 335 A-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 392
Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN 404
I T LD E + Y ++ D G + + T T+ +V+D+NDN P+ P
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSP---- 448
Query: 405 IPVYENVTLGTGLASVHAVDLDSG 428
V+ + D D
Sbjct: 449 -RVFTMCDQNPEPQVLTISDADIP 471
Score = 255 bits (653), Expect = 1e-79
Identities = 101/439 (23%), Positives = 159/439 (36%), Gaps = 93/439 (21%)
Query: 9 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF 68
+ P E P R+ Q+ +++ V YS+ A++
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADN----------- 51
Query: 69 TLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
+ +F I G + + LDRE Y L A
Sbjct: 52 ------------------------PPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV 87
Query: 129 DMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE- 186
P + +++I + D NDN P+F ++ E T V A+ A D D+
Sbjct: 88 SENGSP---VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDN 144
Query: 187 --GQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGE 238
N + YSI+ + F++ G++ + LDRE YTL ++A D
Sbjct: 145 IDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG 204
Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
S K I++ D NDN PIFD K+Y+A VPEN +G V ++S
Sbjct: 205 AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLS-------------- 249
Query: 299 AFDVLEDLPRGSRVGQVFTTDADE-GVNGVVTYSVVSDWANDVFSINP----QSGIFTLT 353
TD D G + F+I GI T
Sbjct: 250 ------------------VTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTA 291
Query: 354 AKLDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYEN 410
LD+E Y+ + ++ P+ +ST TV V D+N+ P F P + V E+
Sbjct: 292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSED 350
Query: 411 VTLGTGLASVHAVDLDSGK 429
++ G + S+ A D D +
Sbjct: 351 LSRGEKIISLVAQDPDKQQ 369
Score = 236 bits (603), Expect = 4e-72
Identities = 71/408 (17%), Positives = 119/408 (29%), Gaps = 89/408 (21%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
++D NDN+P+F Y V E+ G V ++ TD D
Sbjct: 217 ITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGT----------------- 258
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
+ ++ F I G L+ K LD E
Sbjct: 259 ---------------------PAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE 297
Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
+ Y L + + +ST V++ + DVN+ P F+ A + E+
Sbjct: 298 LRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEK 356
Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEI 231
+ +L A D D+ Q + Y I N A ++ +G++ LDRE + + YT+ +
Sbjct: 357 IISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 416
Query: 232 KAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSP 291
D G + + +LD NDN P+ + ++ T+
Sbjct: 417 LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTI----------- 465
Query: 292 VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV-TYSVVSDWANDVFSINPQSGIF 350
+DAD N S+ + G
Sbjct: 466 --------------------------SDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 499
Query: 351 TLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
L + Y V D + V V
Sbjct: 500 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIKC 545
Score = 193 bits (493), Expect = 3e-56
Identities = 69/288 (23%), Positives = 110/288 (38%), Gaps = 50/288 (17%)
Query: 155 APEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGP 208
+++ + + E P + +K+ ++ + + V YSI A F +
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIEW 61
Query: 209 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
G + V + LDRE Y L A + I ++D+NDN P F +
Sbjct: 62 ETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRG 121
Query: 269 SVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVN 325
SV E + G V+ VS TD D+ +N
Sbjct: 122 SVREGVQPGTQVMAVS--------------------------------ATDEDDNIDSLN 149
Query: 326 GVVTYSVVS----DWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSS 380
GV++YS++ + ++F+IN ++G I + LD E Y VQA D +S
Sbjct: 150 GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 209
Query: 381 TVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
+ D NDN P+FDP V EN +G + + DLD
Sbjct: 210 EGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMP 256
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 291 bits (746), Expect = 3e-90
Identities = 113/444 (25%), Positives = 165/444 (37%), Gaps = 92/444 (20%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P F++ V+ V E + G++V V TD D+ ++
Sbjct: 253 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS---------------- 296
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD----DEEIFTINPSNGTLS-NLKHLDR 115
NG L YSI+ D +FTIN G +S LDR
Sbjct: 297 --------------------LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNT 174
E Y L V ATD+ LS + I I D NDNAP F +PEN
Sbjct: 337 EKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GF 392
Query: 175 VVAALKAIDRDEGQ--NSYVEYSIINSEATPFSLGPV----DGLLRVAQKLDREIKSNYT 228
V L D D Y I +E F++ G+L A+ LD E++ Y
Sbjct: 393 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 452
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
L+I ++ S T +A+V + V D N+
Sbjct: 453 LQITVENAEPFSVPLPTS--------------------TATV---------TVTVEDVNE 483
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
P F V DV EDL RG ++ + D D+ ++Y + +D A ++N +G
Sbjct: 484 A-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 541
Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN 404
I T LD E + Y ++ D G + + T T+ +V+D+NDN P+ P
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 405 IPVYENVTLGTGLASVHAVDLDSG 428
+ + D D
Sbjct: 602 MCDQNPEPQV-----LTISDADIP 620
Score = 257 bits (658), Expect = 1e-77
Identities = 101/454 (22%), Positives = 158/454 (34%), Gaps = 100/454 (22%)
Query: 1 VSDTNDNSPVFSE-------PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD 53
V + P E P R+ Q+ +++ V YS+
Sbjct: 140 VLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQ 196
Query: 54 WANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHL 113
A++ + +F I G + + L
Sbjct: 197 GADN-----------------------------------PPQGVFRIEWETGWMLVTRPL 221
Query: 114 DRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPL 172
DRE Y L A P + +++I + D NDN P+F ++ E
Sbjct: 222 DREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQP 278
Query: 173 NTVVAALKAIDRDE---GQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREI 223
T V A+ A D D+ N + YSI+ + F++ G++ + LDRE
Sbjct: 279 GTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK 338
Query: 224 KSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
YTL ++A D S K I++ D NDN PIFD K+Y+A VPEN
Sbjct: 339 FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN---------- 388
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE-GVNGVVTYSVVSDWANDVFS 342
G V ++ TD D G + F+
Sbjct: 389 -----------------------EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFN 425
Query: 343 INP----QSGIFTLTAKLDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVVDLNDNP 395
I GI T LD+E Y+ + ++ P+ +ST TV V D+N+
Sbjct: 426 ITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-A 484
Query: 396 PLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGK 429
P F P + V E+++ G + S+ A D D +
Sbjct: 485 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 518
Score = 256 bits (655), Expect = 3e-77
Identities = 96/446 (21%), Positives = 153/446 (34%), Gaps = 85/446 (19%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLED-LPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVF 59
+D + P FS Y F V L RG ++G+V +D +G+ + F
Sbjct: 27 NADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG------DSRF 80
Query: 60 SINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKS 119
+ P + V + FTI+ R K
Sbjct: 81 RVLPDGTVLVKRH-----------------VKLHKDTKFTISTW---------DARGIKH 114
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF----ITANETTIPENSPLNTV 175
S N+ V + + S ++++ ++ + + EN
Sbjct: 115 STNIAVASKRHRSGE-EAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER-GPF 172
Query: 176 VAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKLDREIKSNYTLE 230
L I ++ + + V YSI A F + G + V + LDRE Y L
Sbjct: 173 PKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLS 232
Query: 231 IKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNS 290
A + I ++D+NDN P F + SV E + G V+ VS
Sbjct: 233 SHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVS------ 286
Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVS----DWANDVFSI 343
TD D+ +NGV++YS++ + ++F+I
Sbjct: 287 --------------------------ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI 320
Query: 344 NPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMP 402
N ++G I + LD E Y VQA D +S + D NDN P+FDP
Sbjct: 321 NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKT 380
Query: 403 PNIPVYENVTLGTGLASVHAVDLDSG 428
V EN +G + + DLD
Sbjct: 381 YTALVPEN-EIGFEVQRLSVTDLDMP 405
Score = 226 bits (577), Expect = 4e-66
Identities = 71/419 (16%), Positives = 119/419 (28%), Gaps = 89/419 (21%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
++D NDN+P+F Y V E+ G V ++ TD D
Sbjct: 366 ITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGT----------------- 407
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
+ ++ F I G L+ K LD E
Sbjct: 408 ---------------------PAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE 446
Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
+ Y L + + +ST V++ + DVN+ P F+ A + E+
Sbjct: 447 LRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEK 505
Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEI 231
+ +L A D D+ Q + Y I N A ++ +G++ LDRE + + YT+ +
Sbjct: 506 IISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 565
Query: 232 KAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSP 291
D G + + +LD NDN P+ + ++ T+
Sbjct: 566 LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTI----------- 614
Query: 292 VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV-VTYSVVSDWANDVFSINPQSGIF 350
+DAD N S+ + G
Sbjct: 615 --------------------------SDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 648
Query: 351 TLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYE 409
L + Y V D + V V
Sbjct: 649 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIKCQEKLVGGFDLP 705
Score = 171 bits (436), Expect = 7e-47
Identities = 56/320 (17%), Positives = 101/320 (31%), Gaps = 44/320 (13%)
Query: 126 MATDMAKPPQK----RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENS-PLNTVVAAL 179
M + + L V + DV+ P F +A ++ + +
Sbjct: 1 MGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKV 60
Query: 180 KAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEP 239
D ++ + F + P DG + V + + + +T+ +
Sbjct: 61 NFSDCTTRKHGLYDVGDSR-----FRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKH 114
Query: 240 SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSE---- 295
S + + + ++ S S+ +P V +
Sbjct: 115 STNI-------AVASKRHRSGEEAHSRSSKLP-----------VLTFPETHTGLKRKKRD 156
Query: 296 ---PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWA----NDVFSINPQSG 348
P E P R+ Q+ +++ V YS+ A VF I ++G
Sbjct: 157 WVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 213
Query: 349 IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVY 408
+T LD E+ Y+ A + + + NV+D NDN P F V
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 273
Query: 409 ENVTLGTGLASVHAVDLDSG 428
E V GT + +V A D D
Sbjct: 274 EGVQPGTQVMAVSATDEDDN 293
Score = 160 bits (407), Expect = 6e-43
Identities = 52/287 (18%), Positives = 95/287 (33%), Gaps = 56/287 (19%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D N+ P F V DV EDL RG ++ + D D+ ++Y + +D A
Sbjct: 478 VEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR---- 532
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK-- 118
T+N NG ++ +LDRE++
Sbjct: 533 ------------------------------------WLTVNKDNGIVTGNGNLDRESEYV 556
Query: 119 --SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVV 176
++Y ++++ TD + T + + + DVNDN P T +N +
Sbjct: 557 KNNTYTVIMLVTDDGVSV---GTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLT 613
Query: 177 AALKAIDRDEGQNSY-VEYSIIN-SEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234
D D N+Y + S+ + S+ T + G + + K +Y++ +
Sbjct: 614 I----SDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669
Query: 235 DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVL 281
D + + + K I V +
Sbjct: 670 DAQNNPQLTVVN--ATVCSCEGKAIKCQEKLVGGFDLPIILVILGSV 714
Score = 66.8 bits (163), Expect = 6e-12
Identities = 32/179 (17%), Positives = 48/179 (26%), Gaps = 48/179 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN PV S V+ P+ + +DAD N
Sbjct: 585 VLDVNDNGPVPSPRVFTMCDQNPEPQVLTI-----SDADIPPNT---------------- 623
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
+ S+ G D S GT L + K
Sbjct: 624 ----------------------YPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGD 661
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAAL 179
Y++ V+ +D PQ T V+ + A + L + + L
Sbjct: 662 YSIYVLLSDAQNNPQ-----LTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVL 715
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 267 bits (684), Expect = 1e-85
Identities = 87/399 (21%), Positives = 143/399 (35%), Gaps = 90/399 (22%)
Query: 1 VSDTNDNSPVFSEPV--YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV 58
V D ND P F V + P + V + D D N
Sbjct: 101 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNI-------------- 146
Query: 59 FSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK 118
Y IV F ++ +G + +
Sbjct: 147 ---------------------------HYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 179
Query: 119 SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVA 177
Y L V A D R +T + AP+F + + E IPEN ++ +
Sbjct: 180 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDII 239
Query: 178 ALKAIDRDEGQNSY-VEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSN---YTLEIKA 233
++KA + + Y ++ A F++GP G++++A++LD E Y+L + A
Sbjct: 240 SIKAKSFADREIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 297
Query: 234 KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVF 293
+ S+ I +V+D NDN+P F
Sbjct: 298 TE-DSGGFSTSVDLTI--------------------------------RVTDVNDNAPKF 324
Query: 294 SEPVY-AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTL 352
P Y A +V ED+P G+ + +V D+D G N + Y V D F+++ +GI
Sbjct: 325 ELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH----FAVDS-NGIIVN 379
Query: 353 TAKLDYEDV-HHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
+LD ++ +Y F+V A+D G+P S TV +
Sbjct: 380 NKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 264 bits (676), Expect = 2e-84
Identities = 88/430 (20%), Positives = 148/430 (34%), Gaps = 93/430 (21%)
Query: 17 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 76
+ V + R+ T+AD G + + + + F I +
Sbjct: 1 SRRVTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNP---------- 47
Query: 77 EDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS------YNLVVMATDM 130
+ +NG + K D E + ++
Sbjct: 48 ---------------------WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 86
Query: 131 AKPPQKRLSSTTQVSIVIRDVNDNAPEFI---TANETTIPENSPLNTVVAALKAIDRDEG 187
A + +V I+++DVND P FI + + N+P NT V L+A D D
Sbjct: 87 AGIK---YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 143
Query: 188 QNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPS---KSS 243
N + Y I+ F + G++R ++ Y L +KA+D+ +
Sbjct: 144 HN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQ 201
Query: 244 RTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVL 303
T + P F SY A +PEN + ++ +
Sbjct: 202 STPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIK------------------- 242
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVV-SDWANDVFSINPQSGIFTLTAKLDYEDV- 361
+ + Y++ F+I P SGI L +LD+ED+
Sbjct: 243 -------------AKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 286
Query: 362 --HHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNI-PVYENVTLGTGLA 418
H Y +V A + S++V + V D+NDN P F+ V E++ LGT +
Sbjct: 287 QPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 419 SVHAVDLDSG 428
V A+D DSG
Sbjct: 346 RVKAMDSDSG 355
Score = 182 bits (464), Expect = 3e-53
Identities = 40/286 (13%), Positives = 79/286 (27%), Gaps = 59/286 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN---------SEATPFSLGPVDGLLRVA 216
+ + + + D + + + P+ +G +RV
Sbjct: 4 VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 217 QKLDREIKSN------YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSK--SYSA 268
+K D E + + + + I + D ND P F ++ A
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 269 SVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV 328
V N V + D D N +
Sbjct: 121 VVQLNAPPNTPVFTLQ--------------------------------ARDPDTDHN--I 146
Query: 329 TYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM----MSSTVTV 384
Y +V D F ++ +SG+ ++ Y+ V+A+D + ST
Sbjct: 147 HYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEE 206
Query: 385 YFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKL 430
++V P F + EN + + S+ A ++
Sbjct: 207 RLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREI 251
Score = 169 bits (431), Expect = 2e-48
Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 55/258 (21%)
Query: 3 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 62
+P F P Y ++ E+ + S + + + + Y++
Sbjct: 211 VGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLK----------- 256
Query: 63 PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS-- 120
G F I P++G + K LD E
Sbjct: 257 ---------------------------AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 289
Query: 121 -YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET--TIPENSPLNTVVA 177
Y+L+V AT+ S++ ++I + DVNDNAP+F + + E+ PL T +
Sbjct: 290 VYSLIVTATE-DSGG---FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 178 ALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE-IKSNYTLEIKAKDR 236
+KA+D D G N+ +EY + + F++ +G++ ++LD + + Y + AKD+
Sbjct: 346 RVKAMDSDSGSNAEIEYLVSDD---HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDK 401
Query: 237 GEPSKSSRTKFFIRLLDE 254
GEP KS + ++
Sbjct: 402 GEPPKSGVATVRVYTKNK 419
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 240 bits (615), Expect = 1e-76
Identities = 73/379 (19%), Positives = 134/379 (35%), Gaps = 83/379 (21%)
Query: 30 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSI 89
++ T+AD G + + + + F I +
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP----------------------- 42
Query: 90 VSGDDEEIFTINPSNGTLSNLKHLDRETKSS------YNLVVMATDMAKPPQKRLSSTTQ 143
+ +NG + K D E + ++ A + +
Sbjct: 43 --------WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIK---YTDNQR 91
Query: 144 VSIVIRDVNDNAPEFI---TANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-NS 199
V I+++DVND P FI + + N+P NT V L+A D D N + Y I+ +
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR 149
Query: 200 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
F + G++R ++ Y L +KA+D+
Sbjct: 150 TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKV------------------- 190
Query: 260 IFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTD 319
D + + ++ E +S+ +P F P Y ++ E+ + S + +
Sbjct: 191 --DDRRFQSTPEERLSI--------VGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 240
Query: 320 ADEGVNGVVTYSVV-SDWANDVFSINPQSGIFTLTAKLDYEDV---HHYIFVVQAQDTGK 375
+ + Y++ F+I P SGI L +LD+ED+ H Y +V A +
Sbjct: 241 FA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS- 296
Query: 376 PMMSSTVTVYFNVVDLNDN 394
S++V + V D+NDN
Sbjct: 297 GGFSTSVDLTIRVTDVNDN 315
Score = 183 bits (466), Expect = 1e-54
Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 55/266 (20%)
Query: 1 VSDTNDNSPVF--SEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV 58
V D ND P F V + P + V + D D N
Sbjct: 96 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--------------- 140
Query: 59 FSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK 118
+ Y IV F ++ +G + +
Sbjct: 141 --------------------------IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 174
Query: 119 SSYNLVVMATDMAKPPQKR-LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVV 176
Y L V A D R ST + + I AP+F + E IPEN ++ +
Sbjct: 175 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 233
Query: 177 AALKAIDRDEGQNSYVEYSIINSE--ATPFSLGPVDGLLRVAQKLDREIKS---NYTLEI 231
++KA + + Y++ A F++GP G++++A++LD E Y+L +
Sbjct: 234 ISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 290
Query: 232 KAKDRGEPSKSSRTKFFIRLLDENDN 257
A + S+ IR+ D NDN
Sbjct: 291 TATEDS-GGFSTSVDLTIRVTDVNDN 315
Score = 171 bits (435), Expect = 4e-50
Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 52/274 (18%)
Query: 176 VAALKAIDRDEGQNSYVEYSIIN---------SEATPFSLGPVDGLLRVAQKLDREIKSN 226
++ + D + + + P+ +G +RV +K D E
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 227 ------YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
+ + + + I + D ND P F ++
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLP------------- 112
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV 340
V + P + V + D D N + Y +V D
Sbjct: 113 -----------------MQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGR 153
Query: 341 FSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM----MSSTVTVYFNVVDLNDNPP 396
F ++ +SG+ ++ Y+ V+A+D + ST ++V P
Sbjct: 154 FEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAP 212
Query: 397 LFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKL 430
F + EN + + S+ A ++
Sbjct: 213 QFYMPSYEAEIPENQKKDSDIISIKAKSFADREI 246
Score = 103 bits (259), Expect = 5e-25
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 48/154 (31%)
Query: 5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
+P F P Y ++ E+ + S + + + + Y++ +
Sbjct: 208 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKA------------ 252
Query: 65 SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS---Y 121
G F I P++G + K LD E Y
Sbjct: 253 --------------------------QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVY 286
Query: 122 NLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNA 155
+L+V AT+ + S++ ++I + DVNDNA
Sbjct: 287 SLIVTATEDSGG----FSTSVDLTIRVTDVNDNA 316
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 240 bits (615), Expect = 2e-76
Identities = 98/399 (24%), Positives = 144/399 (36%), Gaps = 96/399 (24%)
Query: 8 SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGI 67
S V++ F + E + TD D G
Sbjct: 1 SWVWN---QMFVLEEFSGPEPILVGRLHTDLDPG-------------------------- 31
Query: 68 FTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMA 127
+ +++Y + IF IN G + +K LDRE K+ Y L A
Sbjct: 32 --------------SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQA 77
Query: 128 TDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDE 186
D L ++ I ++D+NDNAPEF T+PE S L T V + A D D+
Sbjct: 78 VDFETNKP--LEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADD 135
Query: 187 ---GQNSYVEYSIINSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRG--EPS 240
G ++ + YSI+ + FS+ P +++ A +DRE K Y + I+AKD G
Sbjct: 136 PVYGNSAKLVYSILEGQ-PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGG 194
Query: 241 KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAF 300
S T + L D NDN P F Y SVPE++ +G + +V
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVK---------------- 238
Query: 301 DVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSI----NPQSGIFTLTAKL 356
D D G N +Y ++ +F I Q G+ L L
Sbjct: 239 ----------------ANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPL 282
Query: 357 DYEDVHHYIFVVQAQDTGKPM-------MSSTVTVYFNV 388
D+E Y V+A + T TV V
Sbjct: 283 DFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 189 bits (483), Expect = 5e-57
Identities = 77/272 (28%), Positives = 114/272 (41%), Gaps = 43/272 (15%)
Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKLDREI 223
+ E S ++ D D G + ++Y + A T F + + G + ++LDRE
Sbjct: 9 VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67
Query: 224 KSNYTLEIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 282
K+ YTL +A D ++F I+
Sbjct: 68 KAEYTLTAQAVDFETNKPLEPPSEFIIK-------------------------------- 95
Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVSDWAND 339
V D NDN+P F Y V E G+ V V TDAD+ G + + YS++
Sbjct: 96 VQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG--QP 153
Query: 340 VFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVVDLNDNPP 396
FSI P++ I T +D E Y+ V+QA+D G +S T T+ + D+NDNPP
Sbjct: 154 YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPP 213
Query: 397 LFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
F + V E+V LGT + V A D D G
Sbjct: 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIG 245
Score = 184 bits (469), Expect = 6e-55
Identities = 75/255 (29%), Positives = 114/255 (44%), Gaps = 46/255 (18%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+P F Y V E G+ V V TDAD+ V G
Sbjct: 96 VQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYG---------------- 139
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
++ +L YSI+ G F+I P + L ++DRE K
Sbjct: 140 --------------------NSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKE 177
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAA 178
Y +V+ A DM LS TT +++ + DVNDN P+F + ++PE+ L T +
Sbjct: 178 EYLVVIQAKDMGGHSG-GLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGR 236
Query: 179 LKAIDRDEGQNSYVEYSIINS-EATPFSL----GPVDGLLRVAQKLDREIKSNYTLEIKA 233
+KA D+D G+N+ Y II+ F + DG++R+ + LD E K +YTL+++A
Sbjct: 237 VKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296
Query: 234 KDRGEPSKSSRTKFF 248
+ + S F
Sbjct: 297 ANIHIDPRFSSRGPF 311
Score = 114 bits (288), Expect = 6e-29
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 5/139 (3%)
Query: 290 SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGI 349
S V++ F + E + TD D G + + Y + D A +F IN +G
Sbjct: 1 SWVWN---QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGD 56
Query: 350 FTLTAKLDYEDVHHYIFVVQAQDT-GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVY 408
+LD E+ Y QA D + V D+NDN P F P + V
Sbjct: 57 IHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVP 116
Query: 409 ENVTLGTGLASVHAVDLDS 427
E LGT + +V A D D
Sbjct: 117 EMSILGTSVTNVTATDADD 135
Score = 99.7 bits (249), Expect = 1e-23
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 47/156 (30%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
++D NDN P F++ +Y F V ED+ G+ +G+V D D G
Sbjct: 205 LTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIG------------------- 245
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTI----NPSNGTLSNLKHLDRE 116
+N + Y I+ GD +F I +G + K LD E
Sbjct: 246 --------------------ENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFE 285
Query: 117 TKSSYNLVVMATDMAKPPQKR----LSSTTQVSIVI 148
TK SY L V A ++ P+ T V IV+
Sbjct: 286 TKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 200 bits (511), Expect = 2e-62
Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 45/248 (18%)
Query: 152 NDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLG 207
+ P F I E++P+ + V L A D D + + EA+ F++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVF---GVSGEEASRFFAVE 58
Query: 208 PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYS 267
P G++ + Q LDRE KS +T+E D K I++ D NDN P F ++ YS
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYS 115
Query: 268 ASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV 327
+PEN VG + V+ TD D G G
Sbjct: 116 VRIPENTPVGTPIFIVN--------------------------------ATDPDLGAGGS 143
Query: 328 VTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM-MSSTVTVYF 386
V YS + F+I+ GI T+ +LDYE Y V A D K +S+ +
Sbjct: 144 VLYSFQPP--SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAI 201
Query: 387 NVVDLNDN 394
+ D+ D
Sbjct: 202 IITDMQDM 209
Score = 198 bits (507), Expect = 5e-62
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 5 NDNSPVFSEPVY--AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 62
+ P F+ + + ED P GS V Q+ D D N + + V + A+ F++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 63 PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYN 122
P +G+ L + LDRETKS +
Sbjct: 59 PDTGVVWLR---------------------------------------QPLDRETKSEFT 79
Query: 123 LVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKA 181
+ +D T +V+I + DVNDNAP F IPEN+P+ T + + A
Sbjct: 80 VEFSVSDHQGV------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNA 133
Query: 182 IDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSK 241
D D G V YS F++ G++ V Q+LD E+ Y L + A D+ +
Sbjct: 134 TDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP 192
Query: 242 -SSRTKFFIRLLDENDNN 258
S+ I + D D +
Sbjct: 193 LSTLANLAIIITDMQDMD 210
Score = 146 bits (370), Expect = 8e-42
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Query: 287 NDNSPVFSEPVY--AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
+ P F+ + + ED P GS V Q+ D D N + + V + A+ F++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN 404
P +G+ L LD E + D T V V D+NDN P F P +
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPYS 115
Query: 405 IPVYENVTLGTGLASVHAVDLDSG 428
+ + EN +GT + V+A D D G
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLG 139
Score = 123 bits (312), Expect = 2e-33
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 43/154 (27%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN+P F Y+ + E+ P G+ + V TD D G G V YS + F+
Sbjct: 99 VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFA 156
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
I+ GI T+ + LD E +
Sbjct: 157 IDSARGIVTVI---------------------------------------QELDYEVTQA 177
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDN 154
Y L V ATD K LS+ ++I+I D+ D
Sbjct: 178 YQLTVNATDQDKTR--PLSTLANLAIIITDMQDM 209
Score = 39.9 bits (94), Expect = 6e-04
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 392 NDNPPLF--DPMPPNIPVYENVTLGTGLASVHAVDLDSGKL 430
+ P F + + E+ +G+ + + A D+D+ L
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPL 42
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 179 bits (456), Expect = 2e-54
Identities = 63/242 (26%), Positives = 91/242 (37%), Gaps = 46/242 (19%)
Query: 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-----NSEATPFSLGPVDGLLRVA 216
+ PEN L I + + + V YSI F + G L+V
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 217 QKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISV 276
Q LDRE + Y L A + + I + D+NDN P F + + SV E
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 277 GATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGVVTYSVV 333
G +V++VS TDAD+ V N + Y++V
Sbjct: 124 GTSVMKVS--------------------------------ATDADDDVNTYNAAIAYTIV 151
Query: 334 S----DWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNV 388
S ++F++N +G I LT+ LD E Y VVQA D +S+T V
Sbjct: 152 SQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 389 VD 390
D
Sbjct: 212 KD 213
Score = 161 bits (409), Expect = 2e-47
Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 49/249 (19%)
Query: 15 VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL 74
+ A E+ G + ++ V YS+ A+
Sbjct: 4 IAAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADK----------------- 45
Query: 75 DYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP 134
+F I G L + LDRE + Y L A
Sbjct: 46 ------------------PPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA 87
Query: 135 QKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNS 190
+ ++ I + D NDN PEF E ++ E + T V + A D D+ N+
Sbjct: 88 ---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 191 YVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSR 244
+ Y+I++ + F++ G++ V LDRE YTL ++A D S+
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 245 TKFFIRLLD 253
K I + D
Sbjct: 205 AKAVITVKD 213
Score = 118 bits (299), Expect = 2e-31
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 5/136 (3%)
Query: 297 VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTL 352
+ A E+ G + ++ V YS+ A+ VF I ++G +
Sbjct: 4 IAAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 353 TAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVT 412
T LD E + YI A + + + + V D NDN P F V E
Sbjct: 63 TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122
Query: 413 LGTGLASVHAVDLDSG 428
GT + V A D D
Sbjct: 123 PGTSVMKVSATDADDD 138
Score = 113 bits (285), Expect = 2e-29
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 44/155 (28%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V+D NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT---------------- 141
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLS-NLKHLDR 115
N + Y+IVS D E +FT+N G +S LDR
Sbjct: 142 --------------------YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
E+ +Y LVV A D+ LS+T + I ++D
Sbjct: 182 ESYPTYTLVVQAADLQGEG---LSTTAKAVITVKD 213
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 176 bits (449), Expect = 3e-53
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 41/239 (17%)
Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREI 223
I E + + V+ D D G + ++Y + T F + G + + LDRE
Sbjct: 10 VIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 224 KSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
++ YTL +A DR FI ++V
Sbjct: 69 RAQYTLMAQAVDRDTNRPLEPPSEFI-------------------------------VKV 97
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVSDWANDV 340
D NDN P F +Y +V E G+ V QV +DAD+ G + + YS++
Sbjct: 98 QDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG--QPY 155
Query: 341 FSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTG--KPMMSSTVTVYFNVVDLNDNPP 396
FS+ Q+G I T +D E Y V+QA+D G +S T V + D +
Sbjct: 156 FSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 173 bits (440), Expect = 6e-52
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 50/251 (19%)
Query: 16 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 75
F + E + +D D G
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG---------------------------------- 32
Query: 76 YEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQ 135
+G ++Y + IF I+ +G + K LDRE ++ Y L+ A D
Sbjct: 33 ------DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRP 86
Query: 136 KRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE---GQNSY 191
L ++ + ++D+NDN PEF+ +PE S + T V + A D D+ G ++
Sbjct: 87 --LEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAK 144
Query: 192 VEYSIINSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRG--EPSKSSRTKFF 248
+ YSI+ + FS+ G++R A +DRE K Y + I+AKD G S TK
Sbjct: 145 LVYSILEGQ-PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVT 203
Query: 249 IRLLDENDNNP 259
I L D+ ++
Sbjct: 204 ITLTDDYKDDD 214
Score = 126 bits (318), Expect = 3e-34
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 40/158 (25%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P F +Y +V E G+ V QV +DAD+ G
Sbjct: 97 VQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYG---------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
++ +L YSI+ G F++ G + L ++DRE K
Sbjct: 141 --------------------NSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKE 178
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE 157
Y++V+ A DM LS TT+V+I + D + +
Sbjct: 179 EYHVVIQAKDMGGHMGG-LSGTTKVTITLTDDYKDDDK 215
Score = 113 bits (284), Expect = 2e-29
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Query: 298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
F + E + +D D G +G + Y + + A +F I+ +SG T LD
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65
Query: 358 YEDVHHYIFVVQAQDTGKPM-MSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTG 416
E+ Y + QA D + V D+NDNPP F + V E +GT
Sbjct: 66 REERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTS 125
Query: 417 LASVHAVDLDSG 428
+ V A D D
Sbjct: 126 VIQVTASDADDP 137
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 172 bits (438), Expect = 2e-51
Identities = 44/274 (16%), Positives = 71/274 (25%), Gaps = 53/274 (19%)
Query: 11 FSEPVYAFDVLEDLPRGSRVGQVFTT--DADEGVNGVVTYSVVSDW-----ANDVFSINP 63
FS Y + D G+ + V +E + + + + N+ I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 64 QSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNL 123
+G+ L LD+ L + L
Sbjct: 63 DTGLLYLQRSLDHSSWE-------------------------------KLSVRNRGFPLL 91
Query: 124 VVMATDMAKPPQKR---LSSTTQVSIVIRDVNDNAPEFITAN-----------ETTIPEN 169
V P R + N + P + I EN
Sbjct: 92 TVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIREN 151
Query: 170 SPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTL 229
P T + V Y ++ E PF P + LDRE + Y L
Sbjct: 152 RPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYEL 211
Query: 230 EIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFD 262
G + F + + DE+D+ P F+
Sbjct: 212 VAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 164 bits (416), Expect = 3e-48
Identities = 36/260 (13%), Positives = 64/260 (24%), Gaps = 46/260 (17%)
Query: 163 ETTIPENSPLNTVVAALKAI--DRDEGQNSYVEYSIINSEATP------FSLGPVDGLLR 214
+ + T + + A+ +E + + + + T + GLL
Sbjct: 9 WEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLY 68
Query: 215 VAQKLDREIKSNYTLE--------------IKAKDRGEPSKSSRTKFFIRLLDENDNNPI 260
+ + LD ++ + E + N + P
Sbjct: 69 LQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPA 128
Query: 261 FDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA 320
S F E +F + E+ P G+
Sbjct: 129 C----------------------SSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQ 166
Query: 321 DEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD-TGKPMMS 379
V Y ++ F P S + LD E Y V G
Sbjct: 167 FLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEV 225
Query: 380 STVTVYFNVVDLNDNPPLFD 399
V V D +D+ P F+
Sbjct: 226 VMVPFPVTVYDEDDSAPEFE 245
Score = 113 bits (285), Expect = 3e-29
Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 52/168 (30%)
Query: 1 VSDTNDNSPV----------FSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSV 50
S N + P F E +F + E+ P G+ V Y +
Sbjct: 119 FSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRL 178
Query: 51 VSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNL 110
+ + F P + +S
Sbjct: 179 L----------------------------------------EGEGLPFRSAPDSLEVSTR 198
Query: 111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF 158
LDRE + Y LV + T A + + + D +D+APEF
Sbjct: 199 WALDREQREKYELVAVCTVHAGARE--EVVMVPFPVTVYDEDDSAPEF 244
Score = 96.9 bits (241), Expect = 4e-23
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 31/167 (18%)
Query: 293 FSEPVYAFDVLEDLPRGSRVGQVFTT--DADEGVNGVVTYSVVSDW-----ANDVFSINP 345
FS Y + D G+ + V +E + + + + N+ I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 346 QSGIFTLTAKLDYEDVHHYIF--------------VVQAQDTGKPMMSSTVTVYFNVVDL 391
+G+ L LD+ + +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 392 NDNPPLFDPMPP----------NIPVYENVTLGTGLASVHAVDLDSG 428
N + P + P + + EN GT
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLC 169
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 171 bits (435), Expect = 3e-51
Identities = 63/244 (25%), Positives = 98/244 (40%), Gaps = 48/244 (19%)
Query: 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-----NSEATPFSLGPVDGLLRVA 216
+PENS L I D +N + YS+ F + P+ G L V
Sbjct: 5 PPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 217 QKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISV 276
+ LDRE+ + + L A D + I ++D NDN P F + ++ SVPE
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 277 GATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS 334
G V+ V+ DAD+ +NG++ Y ++S
Sbjct: 124 GTYVMTVT--------------------------------AIDADDPNALNGMLRYRILS 151
Query: 335 ----DWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPM---MSSTVTVYF 386
+ ++F+IN ++G I T+ A LD E V Y ++QA D +S+T T
Sbjct: 152 QAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVI 211
Query: 387 NVVD 390
V D
Sbjct: 212 TVTD 215
Score = 153 bits (388), Expect = 2e-44
Identities = 59/248 (23%), Positives = 92/248 (37%), Gaps = 51/248 (20%)
Query: 18 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
++ E+ G ++ +D N + YSV A+
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQ-------------------- 45
Query: 78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
IF INP +G LS K LDRE + ++L A D+
Sbjct: 46 ---------------PPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 87
Query: 138 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 194
+ + + I + D+NDN PEF+ ++PE S T V + AID D+ N + Y
Sbjct: 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 195 SIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSK---SSRT 245
I++ + F++ G + LDRE YTL I+A D S+
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207
Query: 246 KFFIRLLD 253
I + D
Sbjct: 208 TAVITVTD 215
Score = 118 bits (297), Expect = 3e-31
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAK 355
++ E+ G ++ +D N + YSV A+ +F INP SG ++T
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGT 415
LD E + + A D + + + + NV+D+NDN P F N V E GT
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 416 GLASVHAVDLD 426
+ +V A+D D
Sbjct: 126 YVMTVTAIDAD 136
Score = 110 bits (277), Expect = 2e-28
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 44/156 (28%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS----DW 54
V D NDN P F V+ V E G+ V V DAD+ +NG++ Y ++S
Sbjct: 98 VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTP 157
Query: 55 ANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
+ ++F+IN ++G +I T+ LD
Sbjct: 158 SPNMFTINNETG-----------------------------DIITVAAG---------LD 179
Query: 115 RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
RE Y L++ ATDM P LS+T I + D
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 165 bits (421), Expect = 3e-49
Identities = 60/208 (28%), Positives = 85/208 (40%), Gaps = 12/208 (5%)
Query: 53 DWANDVFSI--NPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNL 110
DW + I S + KL N Y I IF + +G +
Sbjct: 1 DWIWNRMHIREEIDSPLPHHVGKLT--SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAF 58
Query: 111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPEN 169
+ LDRE K+ Y L D L ++ I + D+NDNAP F+ ++PE
Sbjct: 59 ERLDREKKAEYELTAHIIDRRNNRS--LEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM 116
Query: 170 SPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSN 226
S L T V + A D D+ ++ V Y II F++ + LDRE +S
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN-EYFTVDDSGVIFTARADLDRESQSA 175
Query: 227 YTLEIKAKDR-GEPSKSSRTKFFIRLLD 253
Y + +KAKD G +SS IRL D
Sbjct: 176 YEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 162 bits (413), Expect = 3e-48
Identities = 67/237 (28%), Positives = 94/237 (39%), Gaps = 46/237 (19%)
Query: 162 NETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQK 218
N I E PL V L + N Y I A T F + DG + ++
Sbjct: 5 NRMHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFER 60
Query: 219 LDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVG 277
LDRE K+ Y L DR S +KF I+
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIK--------------------------- 93
Query: 278 ATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVS 334
VSD NDN+P+F + ++ V E G+ V +V DAD+ + VTY ++
Sbjct: 94 -----VSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIK 148
Query: 335 DWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD-TGKPMMSSTVTVYFNVVD 390
N+ F+++ IFT A LD E Y +V+A+D G SST TV + D
Sbjct: 149 G--NEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 111 bits (280), Expect = 6e-29
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 40/150 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
VSD NDN+P+F + ++ V E G+ V +V DAD+
Sbjct: 94 VSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVA---------------- 137
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
+ + Y I+ G++ FT++ S + LDRE++S+
Sbjct: 138 --------------------GHATVTYQIIKGNE--YFTVDDSGVIFTARADLDRESQSA 175
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
Y ++V A D SST V I + D
Sbjct: 176 YEIIVKAKDALGLTG--ESSTATVIIRLTD 203
Score = 107 bits (270), Expect = 2e-27
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
D P VG++ ++ N Y + + AN +F + G +LD E
Sbjct: 13 IDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAE 68
Query: 364 YIFVVQAQDT-GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHA 422
Y D + V D+NDN P+F N V E LGT + V A
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTA 128
Query: 423 VDLDS 427
D D
Sbjct: 129 EDADD 133
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 165 bits (419), Expect = 6e-49
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 43/241 (17%)
Query: 158 FITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVA 216
++ + E + + D+D G S ++Y + A F + G ++
Sbjct: 2 WMANQFFLLEEYTGSDYQYVGKLHSDQDRGDGS-LKYILSGDGAGDLFIINENTGDIQAT 60
Query: 217 QKLDREIKSNYTLEIKAKDRG-EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 275
++LDRE K Y L +A +R ++F I+
Sbjct: 61 KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIK------------------------- 95
Query: 276 VGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSV 332
+ D NDN P+F++ VY V E G+ V QV TDAD+ G + V YS+
Sbjct: 96 -------IHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148
Query: 333 VSDWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVV 389
+ FS+ ++G I T +D E+ Y V+QA+D G M +S T TV +
Sbjct: 149 LQ--GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206
Query: 390 D 390
D
Sbjct: 207 D 207
Score = 162 bits (413), Expect = 4e-48
Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 50/245 (20%)
Query: 16 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 75
F + E + +D D G +G + Y + D A D+F IN +G T
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQAT---- 60
Query: 76 YEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQ 135
K LDRE K Y L A +
Sbjct: 61 -----------------------------------KRLDREEKPVYILRAQAVNRRTGRP 85
Query: 136 KRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE---GQNSY 191
+ ++ I I D+NDN P F T+PE + + T V + A D D+ G ++
Sbjct: 86 --VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK 143
Query: 192 VEYSIINSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEP--SKSSRTKFF 248
V YSI+ + FS+ G+++ A +DRE + Y + I+AKD G S T
Sbjct: 144 VVYSILQGQ-PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVN 202
Query: 249 IRLLD 253
I L D
Sbjct: 203 ITLTD 207
Score = 118 bits (297), Expect = 3e-31
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
F + E + +D D G +G + Y + D A D+F IN +G T +LD
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLD 64
Query: 358 YEDVHHYIFVVQAQDTG-KPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTG 416
E+ YI QA + + + D+NDN P+F V E +GT
Sbjct: 65 REEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTF 124
Query: 417 LASVHAVDLDS 427
+ V A D D
Sbjct: 125 VVQVTATDADD 135
Score = 112 bits (281), Expect = 5e-29
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 40/151 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
+ D NDN P+F++ VY V E G+ V QV TDAD+ G
Sbjct: 96 IHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYG---------------- 139
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
++ ++ YSI+ G F++ G + L ++DRE +
Sbjct: 140 --------------------NSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENRE 177
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
Y +V+ A DM LS TT V+I + D
Sbjct: 178 QYQVVIQAKDMGGQMGG-LSGTTTVNITLTD 207
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 156 bits (395), Expect = 2e-45
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 48/242 (19%)
Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
IPEN P V + DR EG + ++ + F + G + V + LDR
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVL 281
E + Y L ++ D + + ++D+NDN PIF Y V E G TV+
Sbjct: 69 ETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVM 128
Query: 282 QVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS----D 335
+++ DAD+ N ++ Y++
Sbjct: 129 RMT--------------------------------AFDADDPATDNALLRYNIRQQTPDK 156
Query: 336 WANDVFSINPQSG-IFTLTAK--LDYEDVHH--YIFVVQAQDTGKPM--MSSTVTVYFNV 388
+ ++F I+P+ G I T+ + LD E + + Y +++AQD ++ T T +
Sbjct: 157 PSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVI 216
Query: 389 VD 390
D
Sbjct: 217 DD 218
Score = 144 bits (366), Expect = 4e-41
Identities = 58/247 (23%), Positives = 87/247 (35%), Gaps = 57/247 (23%)
Query: 22 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
+ P VG+V +D EG +T
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGK-------------------------------- 41
Query: 82 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 141
V D + F IN + G++S + LDRET ++Y L V TD + L
Sbjct: 42 -------GVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGP 91
Query: 142 TQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNSYVEYSIIN 198
+ +++ D NDN P F + E SP T V + A D D+ N+ + Y+I
Sbjct: 92 VPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQ 151
Query: 199 SEATP-----FSLGPVDGLLRVAQ---KLDREIKSN--YTLEIKAKDRG--EPSKSSRTK 246
F + P G + LDRE N Y L I+A+D + +
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTAT 211
Query: 247 FFIRLLD 253
I + D
Sbjct: 212 ATIVIDD 218
Score = 117 bits (294), Expect = 9e-31
Identities = 36/125 (28%), Positives = 51/125 (40%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
+ P VG+V +D EG +T V F IN +G ++T LD E +
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
Y V+ D + V + V+D NDN P+F P V E GT + + A
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF 133
Query: 424 DLDSG 428
D D
Sbjct: 134 DADDP 138
Score = 98.2 bits (245), Expect = 7e-24
Identities = 44/159 (27%), Positives = 60/159 (37%), Gaps = 47/159 (29%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
V D NDN P+F E Y V+E P G+ V ++ DAD+
Sbjct: 98 VIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPAT----------------- 140
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNG---TLSNLKHL 113
DN L Y+I + +F I+P G T+ + L
Sbjct: 141 --------------------DNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALL 180
Query: 114 DRET--KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
DRET Y L++ A DMA L+ T +IVI D
Sbjct: 181 DRETLENPKYELIIEAQDMAGLD-VGLTGTATATIVIDD 218
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 138 bits (351), Expect = 3e-40
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 282 QVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYS--VVSDWAND 339
S NDNSP F + VY D+ E+ G+ + Q+ D D GVNG + Y ++
Sbjct: 3 SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRR 62
Query: 340 VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396
+ ++ SG ++ ++D E+V+ F V A+D G+P + TV N+ D NDN P
Sbjct: 63 LLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 117 bits (295), Expect = 5e-32
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 40/156 (25%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
S NDNSP F + VY D+ E+ G+ + Q+ D D GVNG + Y
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYV----------- 52
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
+ + + ++ ++G LS L +DRE +
Sbjct: 53 --------------------------FGAATESVRRLLRLDETSGWLSVLHRIDREEVNQ 86
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
VMA D +PP + V + I+D NDN P
Sbjct: 87 LRFTVMARDRGQPP---KTDKATVVLNIKDENDNVP 119
Score = 113 bits (285), Expect = 1e-30
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 148 IRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE---ATP 203
NDN+P F + E + ENS T + L+A D D G N +EY +
Sbjct: 4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL 63
Query: 204 FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
L G L V ++DRE + + A+DRG+P K+ + + + DENDN P
Sbjct: 64 LRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 45.2 bits (108), Expect = 3e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 387 NVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
+ NDN P F+ + EN GT + + A DLD G
Sbjct: 3 SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVG 44
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 122 bits (309), Expect = 4e-34
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 282 QVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYS---VVSDWAN 338
S NDN PVF E + E+ P G+ V Q+ TDAD G N + Y V+
Sbjct: 3 SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK 62
Query: 339 DVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN 392
+F++N +G+ T+ LD E+ + V A D +TVT+ NV D+N
Sbjct: 63 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI--NVTDVN 114
Score = 101 bits (255), Expect = 2e-26
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 41/152 (26%)
Query: 1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
S NDN PVF E + E+ P G+ V Q+ TDAD G N + Y F
Sbjct: 4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYI---------FG 54
Query: 61 INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
+ V+ + +F +N + G ++ + LDRE +
Sbjct: 55 ---------------------------AQVAPATKRLFALNNTTGLITVQRSLDREETAI 87
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVN 152
+ + V+A+D + P + V+I + DVN
Sbjct: 88 HKVTVLASDGSSTP-----ARATVTINVTDVN 114
Score = 99.8 bits (250), Expect = 1e-25
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 146 IVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN----SE 200
NDN P F E IPEN+P+ T V L A D D G N+ + Y +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 201 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDEN 255
F+L GL+ V + LDRE + + + + A D +R I + D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSST--PARATVTINVTDVN 114
Score = 45.1 bits (108), Expect = 3e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 387 NVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
+ NDN P+F + + EN +GT + +HA D D G
Sbjct: 3 SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIG 44
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 101 bits (254), Expect = 2e-26
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAK 355
++ E+ G ++ + N + YSV A+ +F INP SG ++T
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
LD E + + A D + + + + NV+D+NDN P F
Sbjct: 68 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 97.0 bits (242), Expect = 1e-24
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 155 APEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPV 209
+++ +PENS L I +N + YS+ A F + P+
Sbjct: 1 GSDWVI-PPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPI 58
Query: 210 DGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 261
G L V + LDRE+ + + L A D + I ++D NDN P F
Sbjct: 59 SGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 91.6 bits (228), Expect = 1e-22
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 39/141 (27%)
Query: 18 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
++ E+ G ++ + N + YSV A+
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQ-------------------- 47
Query: 78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
IF INP +G LS K LDRE + ++L A D+
Sbjct: 48 ---------------PPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 89
Query: 138 LSSTTQVSIVIRDVNDNAPEF 158
+ + + I + D+NDN PEF
Sbjct: 90 VENPIDIVINVIDMNDNRPEF 110
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 95.9 bits (239), Expect = 4e-24
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDYE 359
EDL + + + ++ +D E +TY + +F N +G +T+ LD E
Sbjct: 23 EDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81
Query: 360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
+ ++ A D + + + V+D+NDN P+F
Sbjct: 82 ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 88.2 bits (219), Expect = 2e-21
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 39/137 (28%)
Query: 22 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
EDL + + + ++ +D E +TY
Sbjct: 23 EDLSKKNPIAKI-HSDLAEERGLKITYK-------------------------------- 49
Query: 82 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 141
++ IF N G L+ LDRE + L A D +
Sbjct: 50 ---YTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNN---VEKP 103
Query: 142 TQVSIVIRDVNDNAPEF 158
++ I + D+NDN P F
Sbjct: 104 LELRIKVLDINDNEPVF 120
Score = 87.4 bits (217), Expect = 4e-21
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQ 217
+ E +A + + D E + + Y T F G L V
Sbjct: 18 ALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76
Query: 218 KLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 261
LDRE + L A D + + I++LD NDN P+F
Sbjct: 77 ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 27.3 bits (61), Expect = 5.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1 VSDTNDNSPVFSE 13
V D NDN PVF++
Sbjct: 110 VLDINDNEPVFTQ 122
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 90.1 bits (224), Expect = 2e-22
Identities = 23/87 (26%), Positives = 35/87 (40%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
+ P VG+V +D EG +T V F IN +G ++T LD E +
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVD 390
Y V+ D + V + V+D
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 77.8 bits (192), Expect = 7e-18
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
IPEN P V + DR EG + ++ + F + G + V + LDR
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
E + Y L ++ D + + ++D
Sbjct: 69 ETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 73.2 bits (180), Expect = 3e-16
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 42/129 (32%)
Query: 22 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
+ P VG+V +D EG +T
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGK-------------------------------- 41
Query: 82 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 141
V D + F IN + G++S + LDRET ++Y L V TD + L
Sbjct: 42 -------GVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGP 91
Query: 142 TQVSIVIRD 150
+ +++ D
Sbjct: 92 VPLEVIVID 100
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 87.4 bits (217), Expect = 3e-21
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQ 346
P+ S + E+ G + +++ G V YS+ A+ VF I +
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 347 SGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
+G +T LD E + Y A + + + + V D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 76.6 bits (189), Expect = 2e-17
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 155 APEFI-TANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGP 208
P + PEN L I ++ + V YSI A F +
Sbjct: 1 GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 209 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 254
G L+V + LDRE + YTL A + + I + D+
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105
Score = 74.0 bits (182), Expect = 2e-16
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 39/142 (27%)
Query: 9 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF 68
P+ S + E+ G + +++ G V YS+ A+
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGAD------------ 48
Query: 69 TLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
+F I G L + LDRE ++Y L A
Sbjct: 49 -----------------------TPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV 85
Query: 129 DMAKPPQKRLSSTTQVSIVIRD 150
+ ++ I + D
Sbjct: 86 SSNGNA---VEDPMEILITVTD 104
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 84.7 bits (210), Expect = 2e-20
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 300 FDVLE--DLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
+ E +P VG+V +D G + V +F IN SG ++T LD
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 358 YEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
E + Y V+ D + V + V+D
Sbjct: 67 REAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 77.4 bits (191), Expect = 8e-18
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
+IPEN P +V + DR G + ++ E F + G + V + LDR
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
E +Y L+++ D + I ++D
Sbjct: 68 EAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 70.9 bits (174), Expect = 2e-15
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 77 EDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 136
+L V + + IF IN ++G +S K LDRE SY L V TD
Sbjct: 29 RIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKT-- 86
Query: 137 RLSSTTQVSIVIRD 150
+ + I++ D
Sbjct: 87 -IEGPVDLEILVID 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 83.2 bits (206), Expect = 8e-20
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 294 SEPVYAFDVLE--DLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFT 351
S + E P VG+V ++ EG ++ V +F IN SG +
Sbjct: 1 SILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVS 60
Query: 352 LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
+T LD E + +Y V+ D ++ V + +V+D
Sbjct: 61 VTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 74.4 bits (183), Expect = 1e-16
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
IPEN P V + + EG + ++ + F + + G + V + LDR
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
E +NY LE++ D + I ++D
Sbjct: 68 EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 69.8 bits (171), Expect = 5e-15
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 70 LTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 129
RL V D + IF IN +G +S + LDRE ++Y L V TD
Sbjct: 22 GKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81
Query: 130 MAKPPQKRLSSTTQVSIVIRD 150
++ + ++ I + D
Sbjct: 82 LSGKI---IDGPVRLDISVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 77.4 bits (191), Expect = 8e-18
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
E +D D G +G + Y + + A VF+I+ +G +LD E+
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71
Query: 364 YIFVVQAQDTG-KPMMSSTVTVYFNVVD 390
Y QA D M + D
Sbjct: 72 YTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 71.7 bits (176), Expect = 8e-16
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 65 SGIFTLTAKLDYEDV-SDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNL 123
+G L + D+ +G ++Y + +FTI+ + G + ++ LDRE +S Y L
Sbjct: 15 TGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTL 74
Query: 124 VVMATDMAKPPQKRLSSTTQVSIVIRD 150
A D + ++ I I+D
Sbjct: 75 RAQALDRRTGRP--MEPESEFIIKIQD 99
Score = 65.5 bits (160), Expect = 1e-13
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 162 NETTIPENS-PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKL 219
N+ + E + + D D G + ++Y + A F++ G + Q+L
Sbjct: 6 NQFFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRL 64
Query: 220 DREIKSNYTLEIKAKDRG-EPSKSSRTKFFIRLLD 253
DRE +S YTL +A DR ++F I++ D
Sbjct: 65 DREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 73.6 bits (181), Expect = 2e-16
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
E + TD D G + + Y + D A +F IN +G +LD E+
Sbjct: 12 EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE 70
Query: 364 YIFVVQAQDT-GKPMMSSTVTVYFNVVD 390
Y QA D + V D
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 70.5 bits (173), Expect = 2e-15
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 80 SDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 139
+ +++Y + IF IN G + +K LDRE K+ Y L A D L
Sbjct: 30 PGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK--PLE 87
Query: 140 STTQVSIVIRD 150
++ I ++D
Sbjct: 88 PPSEFIIKVQD 98
Score = 58.2 bits (141), Expect = 5e-11
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 162 NETTIPEN-SPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKL 219
N+ + E S ++ D D G ++Y + A T F + + G + ++L
Sbjct: 5 NQMFVLEEFSGPEPILVGRLHTDLDPGSKK-IKYILSGDGAGTIFQINDITGDIHAIKRL 63
Query: 220 DREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLD 253
DRE K+ YTL +A D ++F I++ D
Sbjct: 64 DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 2e-09
Identities = 58/425 (13%), Positives = 131/425 (30%), Gaps = 121/425 (28%)
Query: 56 NDVFSINPQSGIFTLTAKLDYEDVSDNGR-------LEYSIVSGDDEE----IFTINPSN 104
D+ S+ + D +DV D + +++ I+S D +F S
Sbjct: 19 KDILSVFEDA----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
K ++ + +Y + M+ + Q + + + R NDN F N
Sbjct: 75 QEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYN-- 130
Query: 165 TIPENSPLNTVVAALK---------------------AID--RDEGQNSYVEYSI----I 197
+ P + AL A+D +++ I +
Sbjct: 131 -VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 198 NSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 257
+ +P + +L + QKL +I N+T SS K I +
Sbjct: 190 KNCNSP------ETVLEMLQKLLYQIDPNWT--------SRSDHSSNIKLRIHSIQAELR 235
Query: 258 NPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317
+ SK Y +L + + + ++ AF++ ++ + T
Sbjct: 236 R-LLKSKPYENC----------LLVLLNVQN-----AKAWNAFNL------SCKI--LLT 271
Query: 318 T-DAD--EGVNGVVTYSVVSDWANDVF-------------------------SINPQSGI 349
T + ++ T + D + + NP+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--R 329
Query: 350 FTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPM---PPNIP 406
++ A+ + + + + +++ + NV++ + +FD + PP+
Sbjct: 330 LSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 407 VYENV 411
+ +
Sbjct: 387 IPTIL 391
Score = 50.6 bits (120), Expect = 8e-07
Identities = 48/373 (12%), Positives = 110/373 (29%), Gaps = 124/373 (33%)
Query: 6 DNSPVFSEPVY-AFDVLEDLPRGSRVGQVFTT-DAD--EGVNGVVTYSVVSDWANDVFSI 61
N V + + AF++ ++ + TT + ++ T + D + +
Sbjct: 251 LN--VQNAKAWNAFNL------SCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 62 NPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINP------------SNGTLSN 109
+ + +D+ E+ T NP T N
Sbjct: 301 DEVKSLLLKYLDCRPQDLP--------------REVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 110 LKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPEN 169
KH++ + + ++ + ++ +P + R ++S+ + IP
Sbjct: 347 WKHVNCDKLT--TIIESSLNVLEPAEYR-KMFDRLSVFPPSAH-------------IPTI 390
Query: 170 SPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLD------REI 223
L+ + + D N +YS++ + ++ L + KL+ R I
Sbjct: 391 L-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 224 KSNYTLE------------------------IKAKDRGEPSKSSRTKF----FIR----- 250
+Y + +K + E R F F+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 251 --------------LLDEN-------DNNPIFDS-----KSYSASVPENI--SVGATVLQ 282
L DN+P ++ + + EN+ S +L+
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 283 VSDTNDNSPVFSE 295
++ ++ +F E
Sbjct: 570 IALMAEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 9e-08
Identities = 80/461 (17%), Positives = 134/461 (29%), Gaps = 164/461 (35%)
Query: 17 AFDVLEDLPRGS-RVGQVFTTDADEGVNGVVTYSVVSDWANDV-------------FSIN 62
+ + L +L R + +VFT +G+N + +W + S
Sbjct: 191 SAETLSELIRTTLDAEKVFT----QGLN-------ILEWLENPSNTPDKDYLLSIPISC- 238
Query: 63 PQSGI-----FTLTAK---LDYEDVSDN-----GRLEYSIVS------GDDEEIFTINPS 103
P G+ + +TAK ++ G + +V+ D E F ++
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDSWESFFVS-V 296
Query: 104 NGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANE 163
++ L + +Y P L + ++ D +N NE
Sbjct: 297 RKAITVLFFIGVRCYEAY------------PNTSLPPS-----ILEDSLEN-------NE 332
Query: 164 TTIPENSP--------LNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSL-GPVDGLLR 214
P SP V + + VE S++N A + GP L
Sbjct: 333 GV-P--SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYG 388
Query: 215 VAQKLDREIKSNYTLEIKAKDRGEPSK---SSRT-KFFIRLLDENDNNPI---FDSKSYS 267
+ L + KA + S+ S R KF R L P+ F S
Sbjct: 389 LNLTLRK---------AKAPSGLDQSRIPFSERKLKFSNRFL------PVASPFHS-HLL 432
Query: 268 ASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV 327
+ I L ++ + N+ PVY DL +V + E +
Sbjct: 433 VPASDLI---NKDLVKNNVSFNAKDIQIPVYDTFDGSDL-------RVLSGSISERIVDC 482
Query: 328 VTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFN 387
+ V W + F T H + D G P +S +
Sbjct: 483 IIRLPV-KW--------ETTTQFKAT---------HIL------DFG-PGGASGLG---- 513
Query: 388 VVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
L + N GTG+ + A LD
Sbjct: 514 --------VL---------THRNKD-GTGVRVIVAGTLDIN 536
Score = 52.7 bits (126), Expect = 2e-07
Identities = 79/568 (13%), Positives = 137/568 (24%), Gaps = 248/568 (43%)
Query: 57 DVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSI-VSGDD-------EEIFTIN---PSNG 105
D +S P TL+ +G LE+ + V +E F P+ G
Sbjct: 2 DAYSTRP----LTLS----------HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG 47
Query: 106 TLSNLKHLDRETKSSYNLVV--MATDMAKPPQKRLSSTTQV-SIVIRDVNDNAPEFITAN 162
+ D E + LV + + ++ QV ++ + + + ++ N
Sbjct: 48 FAA-----DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGN 99
Query: 163 ETTIPENSPLNTVVAALKAIDRDEGQN------SYVEYSIINSEATPFSLGPVDGLLRVA 216
+ ++ + A L + +Y + PF L R
Sbjct: 100 D--------IHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAV 149
Query: 217 QK------------------LD--REIKSNY-------------TLEIKAKDRGEPSKSS 243
+ + R++ Y TL + + K
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 244 RTKF-FIRLLDENDNNPIFDSKSYSASVPENIS--------------------------- 275
+ L+ N P K Y S+P IS
Sbjct: 210 TQGLNILEWLENPSNTP---DKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 276 -------------VGATVLQVSDTNDNSPVFSEPV-----YAFDVLEDLPRGSRVGQVF- 316
V A + +D+ ++ F V F + G R + +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWES---FFVSVRKAITVLFFI------GVRCYEAYP 315
Query: 317 --------TTDADEGVNGVVTY--SVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYI- 365
D+ E GV + S+ + V Q + + L I
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV-----QDYVNKTNSHLP-AGKQVEIS 369
Query: 366 -------FVVQAQDTG-------------------------------KPMMSS---TVTV 384
VV +G K S+ V
Sbjct: 370 LVNGAKNLVV----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 385 YFN-----------VVDLNDNPPLFDPMPPNIPVYENVTLGTGLASV------------- 420
F+ DL N F+ IPVY+ G+ L +
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCII 484
Query: 421 ---------------HAVDLDSGKLPFL 433
H +D G L
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGL 512
Score = 45.8 bits (108), Expect = 3e-05
Identities = 51/338 (15%), Positives = 98/338 (28%), Gaps = 143/338 (42%)
Query: 6 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS 65
S A DV AD +S++ D+ NP +
Sbjct: 1637 KTSKA------AQDVWNR--------------ADNHFKDTYGFSIL-----DIVINNPVN 1671
Query: 66 -----------GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
I + + +E + D G+L+ E+IF K ++
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVD-GKLK-------TEKIF------------KEIN 1711
Query: 115 RETKSSYNLVVMATDMAKPPQKRLSST--TQVSIVIRDVNDNAPEFITANETTIPENSPL 172
+ +SY + + LS+T TQ ++
Sbjct: 1712 EHS-TSY--------TFRSEKGLLSATQFTQPALT------------------------- 1737
Query: 173 NTV-VAALKAIDRDEG---QNSYV------EYSIINSEATPFSLGPVDGL----LR---- 214
+ AA + + + +G ++ EY+ + S A S+ + R
Sbjct: 1738 -LMEKAAFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMSIE--SLVEVVFYRGMTM 1793
Query: 215 -VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPEN 273
VA D +SNY + A + G + S + V E
Sbjct: 1794 QVAVPRDELGRSNYG--MIAINPGRVAAS---------FSQEA----------LQYVVER 1832
Query: 274 ISVGAT-VLQVSDTNDNSP----VFSEPVYAFDVLEDL 306
+ ++++ N N V + + A D + ++
Sbjct: 1833 VGKRTGWLVEIV--NYNVENQQYVAAGDLRALDTVTNV 1868
Score = 37.3 bits (86), Expect = 0.012
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 85/219 (38%)
Query: 3 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV-----N-----GVVTYSVVS 52
+T + + +E ++ ++ E +T +++G+ ++ +
Sbjct: 1694 ETIVDGKLKTEKIFK-EINEHSTS-------YTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 53 DW-------ANDVF---SINPQSGIFT-LTAK---LDYED----VSDNGRLEYSIVSGDD 94
D A+ F S+ G + L + + E V G V D+
Sbjct: 1746 DLKSKGLIPADATFAGHSL----GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 95 EE-----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ--VSIV 147
+ INP S +E + VV +R+ T V IV
Sbjct: 1802 LGRSNYGMIAINPGRVAAS----FSQE---ALQYVV----------ERVGKRTGWLVEIV 1844
Query: 148 IRDVNDNAPEFITANETTIPENSPLNTVVAA--LKAIDR 184
N N N+ VAA L+A+D
Sbjct: 1845 ----NYNVE-----NQ----------QYVAAGDLRALDT 1864
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 44.6 bits (106), Expect = 5e-06
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 89 IVSGDDEEIFTINPSNGTLSNLKHLDRE------TKSSYNLVVMATDMAKPPQKRLSSTT 142
I+S ++++ + +G L + LDRE + V+ P Q
Sbjct: 48 ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKS---PVQ-----FI 99
Query: 143 QVSIVIRDVNDNAPEFITANETTI 166
Q I ++DVND+APEF+ +E+
Sbjct: 100 QGEIQLQDVNDHAPEFME-DESGP 122
Score = 41.1 bits (97), Expect = 9e-05
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 302 VLEDLPRGSRVGQVFTTDADEGVNGVVTYS--VVSDWANDVFSINPQSGIFTLTAKLDYE 359
VLE+ RGS VG + D + ++T ++S + + +SG L KLD E
Sbjct: 17 VLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDRE 75
Query: 360 D--------VHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
+ + H+ +++ P+ + + D+ND+ P F
Sbjct: 76 ELCGSTNPCILHFQVLLK-----SPVQFIQGEI--QLQDVNDHAPEF 115
Score = 33.8 bits (78), Expect = 0.027
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 165 TIPENSPLNTVVAAL-KAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDRE 222
++ E + ++V L K + + I+ L G L + +KLDRE
Sbjct: 16 SVLEETDRGSLVGNLAKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDRE 75
Query: 223 ----IKSNYTLEIKAKDRGEPSKSSRTKFF---IRLLDENDNNPIF 261
+ L + S +F I+L D ND+ P F
Sbjct: 76 ELCGSTNPCILHFQV------LLKSPVQFIQGEIQLQDVNDHAPEF 115
Score = 27.2 bits (61), Expect = 4.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 1 VSDTNDNSPVFSE 13
+ D ND++P F E
Sbjct: 105 LQDVNDHAPEFME 117
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 36.4 bits (85), Expect = 0.002
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 89 IVSGDDEEIFTINPSNGTLSNLKHLDRE------TKSSYNLVVMATDMAKPPQKRLSSTT 142
+ S D ++ +N NG L +DRE + S +L V+ P Q
Sbjct: 40 VASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR---PLQ-----VF 91
Query: 143 QVSIVIRDVNDN 154
V + +RD+NDN
Sbjct: 92 HVEVEVRDINDN 103
Score = 33.7 bits (78), Expect = 0.021
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 302 VLEDLPRGSRVGQVFTTDADEGVNGVVTYS--VVSDWANDVFSINPQSGIFTLTAKLDYE 359
+ E+ G+ VG++ D + +V V S D+ +N Q+GI + +++D E
Sbjct: 9 IPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE 67
Query: 360 ----DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDN 394
++ +P+ V V V D+NDN
Sbjct: 68 ELCGRSAECSIHLEVI-VDRPLQVFHVEV--EVRDINDN 103
Score = 31.8 bits (73), Expect = 0.094
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 20 VLEDLPRGSRVGQVFTTDADEGVNGVVTYS--VVSDWANDVFSINPQSGIFTLTAKLDYE 77
+ E+ G+ VG++ D + +V V S D+ +N Q+GI + +++D E
Sbjct: 9 IPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE 67
Score = 31.0 bits (71), Expect = 0.22
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 165 TIPENSPLNTVVAAL-KAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDRE 222
+IPE + T V + + + + + + + + +G+L V ++DRE
Sbjct: 8 SIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDRE 67
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 32.3 bits (74), Expect = 0.27
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 254 ENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
E D + +Y A+ E I+VGA D + F+
Sbjct: 184 EGDGREDTNEFAYPAAYNEVIAVGAV-----DFDLRLSDFT 219
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 30.6 bits (68), Expect = 0.53
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 253 DENDNNPIFDSKSYSASVPENISVGATVLQVS--DTNDNSPV---FSEPVYAFDVLEDLP 307
+ F YSA +P+++ G +L V + N V SEP F V ED
Sbjct: 28 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEP-ADFKVDED-- 84
Query: 308 RGSRVGQVFTT 318
G V+
Sbjct: 85 -----GTVYAV 90
>3otn_A SUSD superfamily protein; putative outer membrane protein,
carbohydrate binding, structural genomics; HET: MSE;
1.95A {Parabacteroides distasonis}
Length = 482
Score = 31.6 bits (72), Expect = 0.59
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 31 GQVFTT--DADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYS 88
T+ A N Y + + N + + L E ++ E S
Sbjct: 10 DSKLTSKESALALTNSA--YLKNTVF-------NKMTPGWGCNTILLLEYMTGKATSENS 60
Query: 89 IVSGDDEEIFTINPSNGTLSNL 110
+ D + ++ + + +
Sbjct: 61 QSNYKDFQDLLVSDRSLYIEDW 82
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 31.3 bits (71), Expect = 0.60
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N+ S SY A+ PE I+VGA D+NDN FS
Sbjct: 261 NEGA---PSPSYPAAYPEVIAVGAI-----DSNDNIASFS 292
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 30.9 bits (70), Expect = 0.75
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N++N +S A +P ++VGA + FS
Sbjct: 226 NNSN---ESWCLPAVLPGTLAVGAA-----KVDGTPCHFS 257
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 30.6 bits (70), Expect = 0.97
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N N + +Y A I+V +T D NDN FS
Sbjct: 163 NAGN---TAPNYPAYYSNAIAVAST-----DQNDNKSSFS 194
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 30.5 bits (69), Expect = 1.0
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N + S SY AS +SV A D+N + FS
Sbjct: 159 NAGD---SSYSYPASYDSVMSVAAV-----DSNLDHAAFS 190
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 30.2 bits (69), Expect = 1.1
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N S SY A ++VGAT D N+N FS
Sbjct: 153 NSGA---GSISYPARYANAMAVGAT-----DQNNNRASFS 184
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 30.0 bits (68), Expect = 1.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N+ S SY A+ PE I+VGA D+NDN FS
Sbjct: 186 NEGA---PSPSYPAAYPEVIAVGAI-----DSNDNIASFS 217
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 29.8 bits (68), Expect = 1.6
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 255 NDNNPI-FDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N N ++ Y A I+VGA D+N N FS
Sbjct: 154 NSGNSGSTNTIGYPAKYDSVIAVGAV-----DSNSNRASFS 189
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 29.5 bits (67), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 255 NDNNPIFDSKSYS-ASVPENISVGATVLQVSDTNDNSPVFS 294
N N D+ + S A VP ++VG+T ++D+ FS
Sbjct: 157 NSNA---DACNTSPARVPSGVTVGST-----TSSDSRSSFS 189
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 29.5 bits (67), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 255 NDNNPIFDSKSYS-ASVPENISVGATVLQVSDTNDNSPVFS 294
NDN+ ++ +YS A + I+VG+T +ND+ FS
Sbjct: 159 NDNS---NACNYSPARAADAITVGST-----TSNDSRSSFS 191
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 255 NDN-NPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N+ + + Y P I+VGA D+++ FS
Sbjct: 155 NEGTSGSSSTVGYPGKYPSVIAVGAV-----DSSNQRASFS 190
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 29.1 bits (66), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 255 NDNNPIFDSKSYS-ASVPENISVGATVLQVSDTNDNSPVFS 294
N+N D+++YS AS P +VGA+ D D FS
Sbjct: 161 NNNA---DARNYSPASEPSVCTVGAS-----DRYDRRSSFS 193
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 29.1 bits (66), Expect = 2.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 255 NDNNPIFDSKSYS-ASVPENISVGATVLQVSDTNDNSPVFS 294
NDN D+ + S AS P +VGAT D+ND FS
Sbjct: 162 NDNR---DAANTSPASEPTVCTVGAT-----DSNDVRSTFS 194
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 29.1 bits (66), Expect = 2.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 255 NDNNPIFDSKSYS-ASVPENISVGATVLQVSDTNDNSPVFS 294
NDN ++ +YS A V E ++VGAT ++D FS
Sbjct: 157 NDNA---NACNYSPARVAEALTVGAT-----TSSDARASFS 189
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 29.1 bits (66), Expect = 2.8
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N+ + + AS I+VGA D D FS
Sbjct: 164 NNGS---STTFEPASYENVIAVGAV-----DQYDRLASFS 195
>3jq1_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Length = 481
Score = 29.3 bits (66), Expect = 2.8
Identities = 8/82 (9%), Positives = 20/82 (24%), Gaps = 12/82 (14%)
Query: 31 GQVFTT--DADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYS 88
+ D + + Y+ + + N + + +D
Sbjct: 4 DTFWKDETDFNLALTSC--YTPLKNALNGGYYGTRGVMLRIAR--------ADEVDFRND 53
Query: 89 IVSGDDEEIFTINPSNGTLSNL 110
I FT + +N +
Sbjct: 54 ISDVYTVNRFTNSNTNSLTQGM 75
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis,
CE migration, acetylation, actin-binding, cytoplasm,
phosphopr protein binding; HET: EPE; 1.80A {Homo
sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A*
Length = 493
Score = 28.9 bits (64), Expect = 3.9
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 31 GQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL-DYEDVSDNGRLEYSI 89
G+ +T A GV T S + F I + TL A + NG+L S+
Sbjct: 312 GKYWTLTATGGV--QSTASSKNASCY--FDIEWRDRRITLRASNGKFVTSKKNGQLAASV 367
Query: 90 VSGDDEEIFTINPSNGTLSNLK 111
+ D E+F + N + +
Sbjct: 368 ETAGDSELFLMKLINRPIIVFR 389
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 28.1 bits (63), Expect = 5.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
N+N S ++ S +SVGAT + FS
Sbjct: 206 NENQNA--SNTWPTSCNNVLSVGAT-----TSRGIRASFS 238
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen
hinge, alternative splicing, cytoplasm, disease
mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo
sapiens} PDB: 3eq1_A*
Length = 364
Score = 28.1 bits (63), Expect = 6.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 271 PENISVGATVLQVSDTNDNSPVF-SEPVYAFDVLEDLPRGSRVG 313
P ++GA + + + +D P + LE LP S VG
Sbjct: 108 PPGFTIGA-ICKRENPHD---AVVFHPKFVGKTLETLPEKSVVG 147
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 28.0 bits (62), Expect = 7.7
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 255 NDNNPIFDSKSYS-ASVPENISVGATVLQVSDTNDNSPVFSEP 296
N + D+ YS AS PE I+VGAT + D
Sbjct: 165 NFRD---DACLYSPASAPEVITVGAT-----NAQDQPVTLGTL 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.374
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,677,961
Number of extensions: 409129
Number of successful extensions: 1360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 208
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.4 bits)