RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6838
(442 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 75.0 bits (183), Expect = 3e-17
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 288 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS 347
+ +P F V DV EDL RG ++ + D D+ ++Y + +D A ++N +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDN 59
Query: 348 GIFTLTAKLDYEDVHH----YIFVVQAQDTGKPMMSSTVTVYFNVVD 390
GI T LD E + Y ++ D G + + T T+ +V+D
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106
Score = 65.4 bits (158), Expect = 8e-14
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 153 DNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG 211
+ AP F+ A + E+ + +L A D D+ Q + Y I N A ++ +G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 212 LLRVAQKLDREIK----SNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
++ LDRE + + YT+ + D G + + +LD
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106
Score = 62.7 bits (151), Expect = 6e-13
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 39/146 (26%)
Query: 6 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS 65
+ +P F V DV EDL RG ++ + D D+ ++Y + +D A ++N +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDN 59
Query: 66 GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVV 125
GI T LD E + ++Y +++
Sbjct: 60 GIVTGNGNLDRES-----------------------------------EYVKNNTYTVIM 84
Query: 126 MATDMAKPPQKRLSSTTQVSIVIRDV 151
+ TD + T + + + DV
Sbjct: 85 LVTDDGVSV---GTGTGTLILHVLDV 107
Score = 29.2 bits (64), Expect = 0.40
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 393 DNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
+ P F P + V E+++ G + S+ A D D
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQ 36
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 69.8 bits (170), Expect = 2e-15
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN----DVFSINPQ 346
P+ S + E+ G + +++ G V YS+ A+ VF I +
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 347 SGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
+G +T LD E + Y A + + + + V D
Sbjct: 60 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 62.1 bits (150), Expect = 8e-13
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKL 219
+ PEN L I ++ + V YSI A F + G L+V + L
Sbjct: 11 SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69
Query: 220 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 254
DRE + YTL A + + I + D+
Sbjct: 70 DRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 104
Score = 53.6 bits (128), Expect = 8e-10
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 39/142 (27%)
Query: 9 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF 68
P+ S + E+ G + +++ G V YS+ A+
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGAD------------ 47
Query: 69 TLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
+F I G L + LDRE ++Y L A
Sbjct: 48 -----------------------TPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV 84
Query: 129 DMAKPPQKRLSSTTQVSIVIRD 150
+ ++ I + D
Sbjct: 85 SSNGNA---VEDPMEILITVTD 103
Score = 25.5 bits (55), Expect = 5.5
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 396 PLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGK 429
PL + P I EN ++ + + K
Sbjct: 1 PLGSWVIPPISCPENEKGPFPK-NLVQIKSNKDK 33
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 65.2 bits (158), Expect = 6e-14
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAK 355
V E+ G ++ +++ V YS+ VF I ++G +T
Sbjct: 7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65
Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
LD E+ Y+ A + + + NV+D
Sbjct: 66 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 58.6 bits (141), Expect = 1e-11
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKL 219
+ EN L I ++ + + V YSI A F + G + V + L
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 220 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
DRE Y L A + I ++D
Sbjct: 67 DREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 50.2 bits (119), Expect = 1e-08
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 78 DVSDNGRLEYSIVSGDDEE----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP 133
+ ++ YSI + +F I G + + LDRE Y L A
Sbjct: 27 NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGS 86
Query: 134 PQKRLSSTTQVSIVIRD 150
P + +++I + D
Sbjct: 87 P---VEEPMEITINVID 100
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 65.0 bits (157), Expect = 2e-13
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 9/133 (6%)
Query: 285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
+ F E VY+ + +D+ G + V ++ + S +D+
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADF------KV 58
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP-MPP 403
+ G F++ AQD V V + P+ +P
Sbjct: 59 DEDGTVYAVRSFPLTA-EQAKFLIYAQDKE-TQEKWQVAVNLSREPTLTEEPMKEPHEIE 116
Query: 404 NIPVYENVTLGTG 416
I + +G
Sbjct: 117 EIVFPRQLAKHSG 129
Score = 57.3 bits (137), Expect = 9e-11
Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 9/135 (6%)
Query: 150 DVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGP 208
++ F +P++ + +K + + + E S
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE---- 60
Query: 209 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
DG + + + I A+D+ K + P+ +
Sbjct: 61 -DGTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVA-VNLSREPTLTEEPMKEPHEIEE 117
Query: 269 -SVPENISVGATVLQ 282
P ++ + LQ
Sbjct: 118 IVFPRQLAKHSGALQ 132
Score = 46.9 bits (110), Expect = 4e-07
Identities = 17/174 (9%), Positives = 40/174 (22%), Gaps = 52/174 (29%)
Query: 3 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 62
+ F E VY+ + +D+ G + V ++ + S +D+
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADF-------- 56
Query: 63 PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYN 122
+GT+ ++ +
Sbjct: 57 -------------------------------------KVDEDGTVYAVRSFPLTAE-QAK 78
Query: 123 LVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN--ETTIPENSPLNT 174
++ A D + V++ P E P ++
Sbjct: 79 FLIYAQDKETQEK----WQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHS 128
Score = 29.6 bits (65), Expect = 0.39
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 390 DLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
++ F + + ++V G L +V + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN 41
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 63.1 bits (152), Expect = 5e-13
Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 24/137 (17%)
Query: 254 ENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVG 313
+NDN P F + SV E + G V+ VS T+++ + S + +
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60
Query: 314 QVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDT 373
+FT + + I + LD E Y VQA D
Sbjct: 61 NLFTINRE------------------------TGVISLIGTGLDREKFPEYTLTVQATDL 96
Query: 374 GKPMMSSTVTVYFNVVD 390
+S + D
Sbjct: 97 EGAGLSVEGKAIIQITD 113
Score = 57.4 bits (137), Expect = 5e-11
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSEATPFSLG 207
NDN P+F ++ E T V A+ A D D+ N + YSI+ +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 208 ------PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
+ + LDRE YTL ++A D S K I++ D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 55.1 bits (131), Expect = 3e-10
Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 42/150 (28%)
Query: 5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG---VVTYSVVSDWANDVFSI 61
NDN P F++ V+ V E + G++V V TD D+ ++ V++YS++ +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP- 60
Query: 62 NPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKSS 120
+FTIN G +S + LDRE
Sbjct: 61 ----------------------------------NLFTINRETGVISLIGTGLDREKFPE 86
Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
Y L V ATD+ LS + I I D
Sbjct: 87 YTLTVQATDLEGAG---LSVEGKAIIQITD 113
Score = 30.8 bits (68), Expect = 0.10
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVD 424
NDN P F V E V GT + +V A D
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATD 34
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 63.1 bits (152), Expect = 6e-13
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA-DEGVNGVVTYSVVSDWANDVFSI-- 343
NDN+P+F Y V E+ G V ++ TD G + F+I
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 344 NPQSGIFTLTAK--LDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVVD 390
+P+S LT LD+E Y+ + ++ P+ +ST TV V D
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 60.4 bits (145), Expect = 5e-12
Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 37/148 (25%)
Query: 5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA-DEGVNGVVTYSVVSDWANDVFSINP 63
NDN+P+F Y V E+ G V ++ TD G + F+I
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT- 59
Query: 64 QSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNL 123
+ G L+ K LD E + Y L
Sbjct: 60 ----------------------------------TDPESNQGILTTAKGLDFELRKQYVL 85
Query: 124 VVMATDMAKPPQKRLSSTTQVSIVIRDV 151
+ + +ST V++ + DV
Sbjct: 86 QITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 50.0 bits (118), Expect = 2e-08
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT------PF 204
NDNAP F +PEN V L D D +
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 205 SLGPVDGLLRVAQKLDREIKSNYTLEIKAKD---RGEPSKSSRTKFFIRLLD 253
G+L A+ LD E++ Y L+I ++ P +S + + D
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 30.0 bits (66), Expect = 0.19
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVD 424
NDN P+FDP V EN +G + + D
Sbjct: 2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTD 33
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 61.8 bits (149), Expect = 1e-12
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN----DVFSINPQSGIFTLTAK 355
++ E+ G ++ + N + YSV A+ +F INP SG ++T
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
LD E + + A D + + + + NV+D
Sbjct: 68 LDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 55.6 bits (133), Expect = 2e-10
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKL 219
+PENS L I +N + YS+ A F + P+ G L V + L
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 220 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
DRE+ + + L A D + I ++D
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 48.3 bits (114), Expect = 7e-08
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 39/133 (29%)
Query: 18 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
++ E+ G ++ + N + YSV A+
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGAD--------------------- 46
Query: 78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
IF INP +G LS K LDRE + ++L A D+
Sbjct: 47 --------------QPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 89
Query: 138 LSSTTQVSIVIRD 150
+ + + I + D
Sbjct: 90 VENPIDIVINVID 102
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 62.0 bits (149), Expect = 1e-12
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG--VNGVVTYSVVSD----WANDV 340
NDN P F V+ V E G+ V V DAD+ +NG++ Y +VS + ++
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 341 FSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKP---MMSSTVTVYFNVVD 390
F+IN ++G I T+ A LD E V Y ++QA D +S+T T V D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 60.1 bits (144), Expect = 7e-12
Identities = 35/147 (23%), Positives = 47/147 (31%), Gaps = 34/147 (23%)
Query: 5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
NDN P F V+ V E G+ V A D N
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMT--------------------VTAIDADDPNAL 40
Query: 65 SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD-RETKSSYNL 123
+G+ R+ S +FTIN G + + RE Y L
Sbjct: 41 NGMLR-------------YRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTL 87
Query: 124 VVMATDMAKPPQKRLSSTTQVSIVIRD 150
++ ATDM P LS+T I + D
Sbjct: 88 IIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 49.3 bits (116), Expect = 4e-08
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP------- 203
NDN PEF+ ++PE S T V + AID D+ P
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 204 FSLGPVDGLLRVAQKL-DREIKSNYTLEIKAKDRGEP---SKSSRTKFFIRLLD 253
F++ G + DRE YTL I+A D S+ I + D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 32.8 bits (73), Expect = 0.024
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVD 424
NDN P F N V E GT + +V A+D
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 33
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 56.3 bits (134), Expect = 1e-10
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ 314
NDN P F + + SV E G +V++VS T+ +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD----------------------- 37
Query: 315 VFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQ 369
N + Y++VS ++F++N +G I LT+ LD E Y VVQ
Sbjct: 38 ------VNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQ 91
Query: 370 AQDTGKPMMSSTVTVYFNVVD 390
A D +S+T V D
Sbjct: 92 AADLQGEGLSTTAKAVITVKD 112
Score = 54.3 bits (129), Expect = 6e-10
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSEATP---- 203
NDN PEF E ++ E + T V + A D D+ N+ + Y+I++ +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 204 -FSLGPVDGLLRVAQKLD-REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
F++ G++ V RE YTL ++A D S+ K I + D
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 53.2 bits (126), Expect = 1e-09
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 44/151 (29%)
Query: 5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
NDN P F++ V+ V E G+ V +V TDAD+ VN
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--------------------- 39
Query: 65 SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKHL-DRETKS 119
+ N + Y+IVS D E +FT+N G +S L DRE+
Sbjct: 40 ---------------TYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 84
Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
+Y LVV A D+ LS+T + I ++D
Sbjct: 85 TYTLVVQAADLQGEG---LSTTAKAVITVKD 112
Score = 31.2 bits (69), Expect = 0.077
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
NDN P F V E GT + V A D D
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 37
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 50.1 bits (118), Expect = 2e-08
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 8/111 (7%)
Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV-SDWANDVFSINP 345
NDN PV S V+ + + P + +DAD N + +
Sbjct: 1 NDNGPVPSPRVF--TMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 346 QSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396
G L + Y V D + V V
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAI 104
Score = 42.8 bits (99), Expect = 7e-06
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Query: 152 NDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG 211
NDN P + T+ + +P V+ A D Y S+ T + G
Sbjct: 1 NDNGPVP-SPRVFTMCDQNPEPQVLTISDA-DIPPNTYPYKVSLSHGSDLTWKAELDSKG 58
Query: 212 LLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
+ + K +Y++ + D + T +
Sbjct: 59 TSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAI 104
Score = 34.3 bits (77), Expect = 0.006
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 56 NDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDR 115
VF++ Q+ + D + + + S+ G D S GT L +
Sbjct: 9 PRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQ 68
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
K Y++ V+ +D PQ T V+ + A
Sbjct: 69 LKKGDYSIYVLLSDAQNNPQ-----LTVVNATVCSCEGKAI 104
Score = 26.2 bits (56), Expect = 4.0
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDS 427
NDN P+ P + + + D D
Sbjct: 1 NDNGPVPS--PRVFTMCDQNPEPQV---LTISDADI 31
>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus
aureus [TaxId: 1280]}
Length = 413
Score = 26.5 bits (58), Expect = 6.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 31 GQVFTTDADEGVNGVVTYS 49
+VFT V+G VT
Sbjct: 250 EEVFTAPDRNRVDGYVTNK 268
Score = 26.5 bits (58), Expect = 6.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 313 GQVFTTDADEGVNGVVTYS 331
+VFT V+G VT
Sbjct: 250 EEVFTAPDRNRVDGYVTNK 268
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 25.6 bits (56), Expect = 6.8
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 242 SSRTKFFIRLLDENDNNPIFDSKSY 266
+ + +F+R+ D D +++ + Y
Sbjct: 43 NPQRSYFLRIFDIKDGKLLWEQELY 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.374
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,580,162
Number of extensions: 73399
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 58
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.1 bits)