Query psy6839
Match_columns 264
No_of_seqs 160 out of 794
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:43:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 4.8E-65 1E-69 466.7 12.6 239 6-263 139-442 (443)
2 PLN00221 tubulin alpha chain; 100.0 1.6E-55 3.6E-60 424.1 16.3 241 14-264 145-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 7.1E-54 1.5E-58 412.5 16.5 239 4-254 137-440 (448)
4 cd02187 beta_tubulin The tubul 100.0 7.5E-53 1.6E-57 403.5 15.1 224 4-249 134-424 (425)
5 PTZ00010 tubulin beta chain; P 100.0 5.2E-53 1.1E-57 406.5 13.3 219 17-253 146-429 (445)
6 PLN00220 tubulin beta chain; P 100.0 1E-52 2.3E-57 404.8 14.3 219 16-252 145-428 (447)
7 PLN00222 tubulin gamma chain; 100.0 1.9E-52 4.2E-57 403.1 15.9 226 16-256 147-448 (454)
8 cd02186 alpha_tubulin The tubu 100.0 1.8E-52 3.8E-57 401.8 14.7 224 16-249 146-434 (434)
9 KOG1374|consensus 100.0 2E-51 4.4E-56 377.3 11.7 227 9-254 144-444 (448)
10 cd02188 gamma_tubulin Gamma-tu 100.0 3.9E-51 8.4E-56 391.9 14.0 216 16-246 145-431 (431)
11 cd02190 epsilon_tubulin The tu 100.0 1.7E-49 3.7E-54 375.3 15.1 224 4-249 104-379 (379)
12 PTZ00387 epsilon tubulin; Prov 100.0 2.5E-49 5.5E-54 382.1 15.1 214 16-250 146-450 (465)
13 cd06059 Tubulin The tubulin su 100.0 1.3E-46 2.7E-51 356.2 14.2 213 17-248 105-382 (382)
14 cd02189 delta_tubulin The tubu 100.0 3E-46 6.6E-51 359.8 14.4 213 16-247 141-445 (446)
15 KOG1375|consensus 100.0 1.6E-44 3.5E-49 331.2 11.3 225 6-254 84-354 (369)
16 KOG1376|consensus 100.0 8.1E-36 1.7E-40 273.5 7.4 210 5-243 139-406 (407)
17 cd00286 Tubulin_FtsZ Tubulin/F 99.9 7.5E-23 1.6E-27 190.0 7.8 160 17-195 105-328 (328)
18 PF03953 Tubulin_C: Tubulin C- 99.7 1.4E-17 3E-22 134.9 1.8 87 105-206 31-125 (126)
19 PF00091 Tubulin: Tubulin/FtsZ 99.1 6.7E-11 1.5E-15 104.0 6.2 61 17-77 140-207 (216)
20 cd06060 misato Human Misato sh 98.9 5E-08 1.1E-12 95.6 15.4 57 189-247 436-492 (493)
21 smart00864 Tubulin Tubulin/Fts 98.8 6.5E-09 1.4E-13 89.8 5.7 63 9-77 95-164 (192)
22 cd02202 FtsZ_type2 FtsZ is a G 98.8 9.5E-09 2.1E-13 96.8 6.0 81 16-97 113-226 (349)
23 cd02191 FtsZ FtsZ is a GTPase 98.6 5.9E-08 1.3E-12 89.8 5.8 58 9-74 97-163 (303)
24 PRK13018 cell division protein 98.2 1.6E-06 3.4E-11 82.6 5.0 65 4-74 118-191 (378)
25 cd02201 FtsZ_type1 FtsZ is a G 98.2 3E-06 6.5E-11 78.4 5.7 60 9-74 97-163 (304)
26 TIGR00065 ftsZ cell division p 98.1 3.6E-06 7.7E-11 79.5 5.4 58 9-74 114-180 (349)
27 PRK09330 cell division protein 97.9 1.6E-05 3.4E-10 75.9 5.3 64 3-74 102-176 (384)
28 PF14881 Tubulin_3: Tubulin do 96.6 0.002 4.3E-08 55.5 3.7 49 17-65 89-152 (180)
29 smart00865 Tubulin_C Tubulin/F 96.6 0.00026 5.5E-09 55.3 -2.0 93 83-206 1-119 (120)
30 COG0206 FtsZ Cell division GTP 93.8 0.12 2.6E-06 48.7 5.6 62 6-73 105-173 (338)
31 KOG2530|consensus 89.7 0.28 6.1E-06 47.6 3.1 49 17-65 219-283 (483)
32 PF06908 DUF1273: Protein of u 57.3 11 0.00023 32.4 3.0 60 3-67 45-111 (177)
33 COG1528 Ftn Ferritin-like prot 53.1 11 0.00025 32.1 2.4 33 213-251 114-146 (167)
34 PRK13660 hypothetical protein; 44.6 43 0.00093 28.9 4.8 58 3-65 45-109 (182)
35 KOG2794|consensus 43.9 42 0.00091 31.1 4.7 57 2-58 85-164 (340)
36 PF08259 Periviscerokin: Periv 35.9 15 0.00033 17.2 0.4 8 92-99 3-10 (11)
37 PF12210 Hrs_helical: Hepatocy 30.4 92 0.002 24.2 4.0 56 189-249 25-89 (96)
38 TIGR00243 Dxr 1-deoxy-D-xylulo 29.7 1.7E+02 0.0037 28.4 6.6 56 2-67 3-59 (389)
39 PF13174 TPR_6: Tetratricopept 27.9 52 0.0011 18.6 1.9 19 229-247 13-31 (33)
40 COG0680 HyaD Ni,Fe-hydrogenase 26.8 2.1E+02 0.0045 24.0 6.0 61 1-65 2-63 (160)
41 cd06408 PB1_NoxR The PB1 domai 26.1 1.6E+02 0.0034 22.4 4.6 53 187-242 13-70 (86)
42 PRK10466 hybD hydrogenase 2 ma 25.9 2.1E+02 0.0047 23.7 6.0 60 1-65 1-62 (164)
43 PF04695 Pex14_N: Peroxisomal 25.7 29 0.00062 28.3 0.6 27 214-243 25-51 (136)
44 KOG3975|consensus 23.9 43 0.00093 30.8 1.4 49 1-62 110-158 (301)
45 PRK04940 hypothetical protein; 23.6 27 0.00059 30.1 0.1 34 3-44 62-96 (180)
46 cd04823 ALAD_PBGS_aspartate_ri 21.4 1.8E+02 0.004 27.4 5.0 45 2-46 70-124 (320)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=4.8e-65 Score=466.66 Aligned_cols=239 Identities=37% Similarity=0.546 Sum_probs=218.4
Q ss_pred EccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH--
Q psy6839 6 FGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE-- 74 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~-- 74 (264)
||=+||+-|. |||||+|+||||||.+++|||||.++. |+ ||+|+|+|+|||++|+||+||++||.
T Consensus 139 ~gGGTGSG~G----slLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~ 214 (443)
T COG5023 139 LGGGTGSGLG----SLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRN 214 (443)
T ss_pred ccCcCcccHH----HHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHh
Confidence 5667887665 999999999999999999999998766 99 99999999999999999999999998
Q ss_pred -------------------hcCCCC----cccCCChhhccccCCCCCCcc------c--------cc---------cccc
Q psy6839 75 -------------------SGSQNS----EDLGSSRKSSIVSLIPAPSSA------T--------AN---------HRLW 108 (264)
Q Consensus 75 -------------------s~~t~s----~~ln~~l~~l~~nLvP~P~lh------t--------~~---------~ql~ 108 (264)
|++|++ |+||+||+++.+||||+|++| | ++ +|||
T Consensus 215 L~i~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f 294 (443)
T COG5023 215 LRIQNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLF 294 (443)
T ss_pred cCCCCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHh
Confidence 677777 999999999999999999999 1 11 8899
Q ss_pred ccC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCC
Q psy6839 109 PEE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGG 180 (264)
Q Consensus 109 ~~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~ 180 (264)
+|+ +++.++|+++++++||++++++ ++ +.+++.|+.++||+|+|.++ |+++|+++|..
T Consensus 295 ~p~N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~----------~vai~~~~P~~---- 360 (443)
T COG5023 295 DPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGF----------KVAICKRPPSE---- 360 (443)
T ss_pred CcccceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcce----------eeeeeccCCcc----
Confidence 987 7899999999999999999999 77 88999999999999999999 89999999943
Q ss_pred cccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCccCCCCC
Q psy6839 181 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEG 260 (264)
Q Consensus 181 ~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~~~~~~~~ 260 (264)
..+.++|+|||+|+|+|...|+|+.+||++||+||||||||+++||||+||.||++.|++|++||++++++.+.++...
T Consensus 361 -~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~~ 439 (443)
T COG5023 361 -PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEED 439 (443)
T ss_pred -cccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhhh
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999988665543
Q ss_pred ccC
Q psy6839 261 AEE 263 (264)
Q Consensus 261 ~~~ 263 (264)
.||
T Consensus 440 ~~~ 442 (443)
T COG5023 440 EEE 442 (443)
T ss_pred hcc
Confidence 333
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.6e-55 Score=424.11 Aligned_cols=241 Identities=44% Similarity=0.659 Sum_probs=214.0
Q ss_pred cccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH----------
Q psy6839 14 FTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE---------- 74 (264)
Q Consensus 14 ~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~---------- 74 (264)
+.-++|++++|.|||+||++.+.+++|||+... |+ |||++|++++|+++++||+||+++|.
T Consensus 145 tGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~ 224 (450)
T PLN00221 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTY 224 (450)
T ss_pred ccchHHHHHHHHHHHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCH
Confidence 334666999999999999999999999998642 99 99999999999999999999999996
Q ss_pred -----------hcCCCC----cccCCChhhccccCCCCCCcc--c------------cc---------ccccccC-----
Q psy6839 75 -----------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------AN---------HRLWPEE----- 111 (264)
Q Consensus 75 -----------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~~---------~ql~~~~----- 111 (264)
|++|++ |.+|.||+++++||||+|++| + .+ ++++.++
T Consensus 225 ~dlN~lIa~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~ 304 (450)
T PLN00221 225 TNLNRLISQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAK 304 (450)
T ss_pred HHHHHHHhhhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeee
Confidence 455655 899999999999999999999 1 01 4455554
Q ss_pred -CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhce
Q psy6839 112 -ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRA 188 (264)
Q Consensus 112 -~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S 188 (264)
+++.++|||+++++||+..+.+ .+ +.++++++.+.|++|+|+++ |+++|+++|...+++.+.+.+++
T Consensus 305 ~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~----------~~~i~~~~~~~~~~~~~~~~~~s 374 (450)
T PLN00221 305 CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF----------KCGINYQPPTVVPGGDLAKVQRA 374 (450)
T ss_pred cCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCE----------eeeecCCCCccCCCcccccccee
Confidence 5668999999999999987777 55 66777788899999999999 88999999876676666678899
Q ss_pred eeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCccCCCCCccCC
Q psy6839 189 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 264 (264)
Q Consensus 189 ~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~~~~~~~~~~~~ 264 (264)
+++++|+|+|..+|+++.++|++||+||||||||+++||||+||.||+++|++||++|++++++..++.+++.|||
T Consensus 375 ~~~l~NstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 450 (450)
T PLN00221 375 VCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEEY 450 (450)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988887777888887
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=7.1e-54 Score=412.54 Aligned_cols=239 Identities=43% Similarity=0.625 Sum_probs=207.2
Q ss_pred EEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH
Q psy6839 4 VIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE 74 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~ 74 (264)
++.+++-| ..-|+|++|+|.|||+||++.+.+++|||+.+. |+ |||++|+++||+++++||++|+++|.
T Consensus 137 i~~Sl~GG--TGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~ 214 (448)
T PTZ00335 137 VFHAVGGG--TGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICR 214 (448)
T ss_pred EeeccCCC--ccchHHHHHHHHHHHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHH
Confidence 34444422 334567999999999999999999999998642 99 99999999999999999999999995
Q ss_pred ---------------------hcCCCC----cccCCChhhccccCCCCCCcc--c------------cc---------cc
Q psy6839 75 ---------------------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------AN---------HR 106 (264)
Q Consensus 75 ---------------------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~~---------~q 106 (264)
+++|++ |.+|.|++++.+||||+|++| + .+ ++
T Consensus 215 ~~~~~~~~~~~~~N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~ 294 (448)
T PTZ00335 215 RNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNS 294 (448)
T ss_pred HhcCCCCCCHHHHHHHHHhhhcccccccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHH
Confidence 445554 899999999999999999999 1 01 45
Q ss_pred ccccC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCC
Q psy6839 107 LWPEE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVP 178 (264)
Q Consensus 107 l~~~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~ 178 (264)
++.++ +++.++|||+++++||+..+.+ .+ +.++++++.+.|++|+|+++ |+++|+++|...+
T Consensus 295 l~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~----------~~~~~~~~~~~~~ 364 (448)
T PTZ00335 295 AFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF----------KCGINYQPPTVVP 364 (448)
T ss_pred hcCccceeEecCCCccchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCE----------eeeecCCCCccCC
Confidence 55554 5668999999999999887777 55 77787788899999999999 8999999987667
Q ss_pred CCcccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCc
Q psy6839 179 GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSV 254 (264)
Q Consensus 179 ~~~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~~ 254 (264)
++.+.+.++++++|+|+|+|..+|+++.+||++||+||||||||+++||||+||.||+++|++|+++|++++++..
T Consensus 365 ~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~ 440 (448)
T PTZ00335 365 GGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 440 (448)
T ss_pred CccccccceEEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6666678999999999999999999999999999999999999999999999999999999999999999976544
No 4
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=7.5e-53 Score=403.54 Aligned_cols=224 Identities=24% Similarity=0.452 Sum_probs=198.0
Q ss_pred EEEccc--cccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHH
Q psy6839 4 VIFGLA--FGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDA 72 (264)
Q Consensus 4 ~~~~~~--~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i 72 (264)
++.+++ ||+ ++|++++|.|||+||++.+.+++|||+..+ |+ |||++|+++||+++++||+||+++
T Consensus 134 ~~~sl~GGTGS----G~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i 209 (425)
T cd02187 134 LTHSLGGGTGS----GMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDI 209 (425)
T ss_pred EEeecCCCccc----cHHHHHHHHHHHhcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHH
Confidence 445554 554 455999999999999999999999998753 99 999999999999999999999999
Q ss_pred HH---------------------hcCCCC----cccCCChhhccccCCCCCCcc--c------------c---------c
Q psy6839 73 VE---------------------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------A---------N 104 (264)
Q Consensus 73 ~~---------------------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~---------~ 104 (264)
|. +++|++ |++|.||+++++||||+|++| + . .
T Consensus 210 ~~~~~~~~~~~~~~~N~~ia~~is~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~ 289 (425)
T cd02187 210 CFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 289 (425)
T ss_pred HHHhcCCCCCCHHHHHHHHhccccccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHH
Confidence 96 445555 999999999999999999999 1 0 1
Q ss_pred ccccccC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCC
Q psy6839 105 HRLWPEE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTV 176 (264)
Q Consensus 105 ~ql~~~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~ 176 (264)
++|+.++ +++.++|||+++++||+..+++ .+ +.++++++.+.|++|+|+++ ++++|+++|.
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~----------~~~~~~~~~~- 358 (425)
T cd02187 290 QQMFDAKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNV----------KTAVCDIPPR- 358 (425)
T ss_pred HHHhCccCeeeccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCE----------eeeecCCCCC-
Confidence 5666665 4668999999999999987777 55 77787788899999999999 8899998874
Q ss_pred CCCCcccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy6839 177 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 249 (264)
Q Consensus 177 ~~~~~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~ 249 (264)
+.++++++|+|+|+|.++|++++++|++||+||||||||+++||||+||.||+++|++|+++|+++
T Consensus 359 -------~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 359 -------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred -------CcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999999999999999999999999999999999986
No 5
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=5.2e-53 Score=406.53 Aligned_cols=219 Identities=24% Similarity=0.442 Sum_probs=196.7
Q ss_pred chhHhHHHHHHHHhCcceecEEEEEecCC-C-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-------------
Q psy6839 17 FIPLLYFTFLREFFGTTLFQSHTIYHINN-L-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE------------- 74 (264)
Q Consensus 17 ~~~~llle~Lrd~Yp~~~~~~~sV~P~~~-~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~------------- 74 (264)
++|++++|.|+|+||++.+.+++|||+.. + |+ ||+++|++++|++++|||+||++||+
T Consensus 146 Glgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~l 225 (445)
T PTZ00010 146 GMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDL 225 (445)
T ss_pred cHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHH
Confidence 45599999999999999999999999865 2 99 99999999999999999999999996
Q ss_pred --------hcCCCC----cccCCChhhccccCCCCCCcc--c------------c---------cccccccC------CC
Q psy6839 75 --------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------A---------NHRLWPEE------EN 113 (264)
Q Consensus 75 --------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~---------~~ql~~~~------~~ 113 (264)
|++|++ |++|.||+++.+||||+|++| + . .++|+.++ ++
T Consensus 226 N~lIaq~is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~ 305 (445)
T PTZ00010 226 NHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADP 305 (445)
T ss_pred HHHHHhhccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCC
Confidence 445555 999999999999999999999 1 0 15677665 56
Q ss_pred CCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeee
Q psy6839 114 SNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCM 191 (264)
Q Consensus 114 ~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~ 191 (264)
+.++|||+++++||++.+++ .+ +.++++++.+.|++|+|+++ |+++|+++|. +.++++++
T Consensus 306 ~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~----------~~~~~~~~~~--------~~~~s~~~ 367 (445)
T PTZ00010 306 RHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNI----------KSSVCDIPPK--------GLKMSVTF 367 (445)
T ss_pred CcchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCE----------EEeecCcCCc--------CccceEEE
Confidence 78999999999999988777 55 66777788899999999999 8999999874 36889999
Q ss_pred ecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCC
Q psy6839 192 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 253 (264)
Q Consensus 192 LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~ 253 (264)
|+|+|+|..+|+++.++|++||+||||||||+++||||+||.||+++|++|+++|++++...
T Consensus 368 lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 368 IGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999997664
No 6
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1e-52 Score=404.82 Aligned_cols=219 Identities=24% Similarity=0.449 Sum_probs=193.8
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCC-C-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH------------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINN-L-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE------------ 74 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~-~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~------------ 74 (264)
-|+|++|+|.|||+||++.+.+++|||++. + |+ |||++|+++||+|+++||++|+++|.
T Consensus 145 SG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~ 224 (447)
T PLN00220 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGD 224 (447)
T ss_pred ccHHHHHHHHHHHhccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHH
Confidence 455699999999999999999999999863 2 99 99999999999999999999999996
Q ss_pred ---------hcCCCC----cccCCChhhccccCCCCCCcc--c------------cc---------ccccccC------C
Q psy6839 75 ---------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------AN---------HRLWPEE------E 112 (264)
Q Consensus 75 ---------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~~---------~ql~~~~------~ 112 (264)
+++|++ |++|.++++++++|||+|++| + .+ ++|+.++ +
T Consensus 225 ~N~lIa~~is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~ 304 (447)
T PLN00220 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAD 304 (447)
T ss_pred HHhHhhccccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccC
Confidence 344444 999999999999999999999 1 01 4555544 5
Q ss_pred CCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceee
Q psy6839 113 NSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVC 190 (264)
Q Consensus 113 ~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~ 190 (264)
+..++|||+++++||+..+.+ .+ +.++++++.+.|++|+|+++ ++++|+++|. +.+++++
T Consensus 305 ~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~----------~~~~~~~~~~--------~~~~s~~ 366 (447)
T PLN00220 305 PRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNV----------KSSVCDIPPK--------GLKMAST 366 (447)
T ss_pred CCCchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCE----------EEeecCCCCC--------CcceeeE
Confidence 567999999999999987777 55 66777788899999999999 8999999875 3688999
Q ss_pred eecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccC
Q psy6839 191 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 252 (264)
Q Consensus 191 ~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~ 252 (264)
+|+|+|+|..+|+++.++|++||+||||||||+++|||++||.||+++|++|+++|+++++.
T Consensus 367 ~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred EecCchHHHHHHHHHHHHHHHHHhcCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998754
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.9e-52 Score=403.06 Aligned_cols=226 Identities=19% Similarity=0.231 Sum_probs=197.0
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCC--C-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-----------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINN--L-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE----------- 74 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~--~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~----------- 74 (264)
-++|++|+|.|||+||++.+.+++|||+.. + |+ |||++|+++||+++++||+||++||+
T Consensus 147 SGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~ 226 (454)
T PLN00222 147 SGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFA 226 (454)
T ss_pred chHHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHH
Confidence 345599999999999999999999999862 1 99 99999999999999999999999996
Q ss_pred ----------hcCCCC----cccCCChhhccccCCCCCCcc--c--------c--------------cccccccC-----
Q psy6839 75 ----------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T--------A--------------NHRLWPEE----- 111 (264)
Q Consensus 75 ----------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t--------~--------------~~ql~~~~----- 111 (264)
|++|++ |.+|.||+++.+||||+|++| + . .++|+.++
T Consensus 227 dlN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~ 306 (454)
T PLN00222 227 QTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVS 306 (454)
T ss_pred HHHHHhccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceee
Confidence 455555 899999999999999999999 1 0 15566655
Q ss_pred -CCCC-----CcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCccc
Q psy6839 112 -ENSN-----GTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLA 183 (264)
Q Consensus 112 -~~~~-----~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~ 183 (264)
+++. +||||+++++||++.+++ .+ +.++++++.+.|++|+|+++ |+++|+++|...+
T Consensus 307 ~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~----------k~~~~~~~~~~~~----- 371 (454)
T PLN00222 307 SYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASI----------QVALSRKSPYVQT----- 371 (454)
T ss_pred cCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCE----------eeeeccCCCCCCC-----
Confidence 3444 899999999999988777 55 77787788899999999999 8999998885322
Q ss_pred chhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCC----hhhHHHHHHHHHHHHHHHHHHccCCccC
Q psy6839 184 KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGMDSVEG 256 (264)
Q Consensus 184 ~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGme----e~eF~eA~~~le~li~eY~~~~~~~~~~ 256 (264)
++++++++|+|+|+|..+|+++.++|++||+||||||||+++||+ ++||+||+++|++|+++|++++...+.|
T Consensus 372 ~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 372 AHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 367899999999999999999999999999999999999999993 8999999999999999999998665533
No 8
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.8e-52 Score=401.82 Aligned_cols=224 Identities=46% Similarity=0.666 Sum_probs=198.6
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH------------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE------------ 74 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~------------ 74 (264)
-++|++|+|.|||+||++.+.+++|||+... |+ |||++|+++||+++++||++|+++|.
T Consensus 146 SGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~ 225 (434)
T cd02186 146 SGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTN 225 (434)
T ss_pred hhHHHHHHHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHH
Confidence 4556999999999999999999999998742 99 99999999999999999999999996
Q ss_pred ---------hcCCCC----cccCCChhhccccCCCCCCcc--c------------cc---------ccccccC------C
Q psy6839 75 ---------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------AN---------HRLWPEE------E 112 (264)
Q Consensus 75 ---------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~~---------~ql~~~~------~ 112 (264)
+++|++ |.+|.|+++++++|||+|++| + .+ ++|+.++ +
T Consensus 226 lN~iIa~~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~ 305 (434)
T cd02186 226 LNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCD 305 (434)
T ss_pred HHHHHHHHhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecC
Confidence 344544 889999999999999999999 1 01 4455444 5
Q ss_pred CCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceee
Q psy6839 113 NSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVC 190 (264)
Q Consensus 113 ~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~ 190 (264)
++.++|||+++++||+..+++ .+ +.++++++.+.|++|+|+++ ++++|+++|...+++.+.+.+++++
T Consensus 306 ~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~----------~~~~~~~~~~~~~~~~~~~~~~s~~ 375 (434)
T cd02186 306 PRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGF----------KVGINYQPPTVVPGGDLAKVQRAVC 375 (434)
T ss_pred CcchhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcE----------eeeecCCCCccCCCccccccceEEE
Confidence 678999999999999988777 55 66677788899999999999 8999999987667666767889999
Q ss_pred eecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy6839 191 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 249 (264)
Q Consensus 191 ~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~ 249 (264)
+++|+|+|.++|+++.++|++||+||||||||+++||||+||.||+++|++|+++|+++
T Consensus 376 ~l~Nst~i~~~f~~i~~~f~~mf~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 376 MLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred EecCchHHHHHHHHHHHHHHHHHhhcchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 9
>KOG1374|consensus
Probab=100.00 E-value=2e-51 Score=377.35 Aligned_cols=227 Identities=22% Similarity=0.286 Sum_probs=203.5
Q ss_pred ccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC---------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH----
Q psy6839 9 AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL---------NQ-DTLAQIEENSNGTSILAEDEFYDAVE---- 74 (264)
Q Consensus 9 ~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~---------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~---- 74 (264)
+||+ ++||+|+|+|+|+||||.++|+||||+.+. |+ |||+||+++||||+|+||+||++||.
T Consensus 144 GTGS----GlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~ 219 (448)
T KOG1374|consen 144 GTGS----GLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLH 219 (448)
T ss_pred CCCc----chHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhc
Confidence 4565 456999999999999999999999998843 99 99999999999999999999999997
Q ss_pred -----------------hcCCCC----cccCCChhhccccCCCCCCcc------c----------cc---------cccc
Q psy6839 75 -----------------SGSQNS----EDLGSSRKSSIVSLIPAPSSA------T----------AN---------HRLW 108 (264)
Q Consensus 75 -----------------s~~t~s----~~ln~~l~~l~~nLvP~P~lh------t----------~~---------~ql~ 108 (264)
|.+|.+ ++||++|..|...|||+|+|| | ++ |+|+
T Consensus 220 i~~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL 299 (448)
T KOG1374|consen 220 IQNPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLL 299 (448)
T ss_pred CCCCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHh
Confidence 455555 999999999999999999999 1 11 8899
Q ss_pred ccC-------C-C-CCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCC
Q psy6839 109 PEE-------E-N-SNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVV 177 (264)
Q Consensus 109 ~~~-------~-~-~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~ 177 (264)
+|+ + . .+.+|+++++++.|.+++.+ .+ +.++++++...|++|.|.++ ++++.+.+|+..
T Consensus 300 ~pkn~mvs~~~~~~~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si----------~val~k~spy~~ 369 (448)
T KOG1374|consen 300 QPKNMMVSTADDLSGNPCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASI----------QVALSKKSPYVQ 369 (448)
T ss_pred CcchhhhhccccccCCcchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHH----------HhhhhcCCCccc
Confidence 887 2 2 24489999999999999888 66 88898888999999999999 677888888765
Q ss_pred CCCcccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChh---hHHHHHHHHHHHHHHHHHHccCCc
Q psy6839 178 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGMDSV 254 (264)
Q Consensus 178 ~~~~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~---eF~eA~~~le~li~eY~~~~~~~~ 254 (264)
+ .+++||+||+|+|+|..+|++++.|||+|++||||||+|+++||+++ ||+|+++.|+++++||+.+++..+
T Consensus 370 ~-----~~~vSglml~N~t~i~~lfe~~~~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~Y 444 (448)
T KOG1374|consen 370 R-----AHRVSGLMLANSTSIVSLFERILGQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPDY 444 (448)
T ss_pred c-----ccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 4 58999999999999999999999999999999999999999999988 999999999999999999987655
No 10
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=3.9e-51 Score=391.91 Aligned_cols=216 Identities=24% Similarity=0.309 Sum_probs=189.9
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCCC---------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-----------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINNL---------NQ-DTLAQIEENSNGTSILAEDEFYDAVE----------- 74 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~---------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~----------- 74 (264)
-|+|++|+|+|||+||++.+.+++|||+.++ |+ |||++|++++|+++++||++|++||.
T Consensus 145 SG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~ 224 (431)
T cd02188 145 SGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFD 224 (431)
T ss_pred hhHHHHHHHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHH
Confidence 3455999999999999999999999997642 99 99999999999999999999999996
Q ss_pred ----------hcCCCC----cccCCChhhccccCCCCCCcc--c---------c----c---------ccccccC-----
Q psy6839 75 ----------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T---------A----N---------HRLWPEE----- 111 (264)
Q Consensus 75 ----------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t---------~----~---------~ql~~~~----- 111 (264)
+++|++ |.+|.|++++.+||||+|++| + . + +++++++
T Consensus 225 ~~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~ 304 (431)
T cd02188 225 QINSLVSTVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVS 304 (431)
T ss_pred HHHHHHhccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceee
Confidence 444555 899999999999999999999 1 1 0 3444443
Q ss_pred -CC-CCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhc
Q psy6839 112 -EN-SNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQR 187 (264)
Q Consensus 112 -~~-~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~ 187 (264)
++ +.+||||+++++||+..+++ .+ +.++++++.+.|++|+|+++ |+++|+++|...+ +.++
T Consensus 305 ~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~----------~~~~~~~~~~~~~-----~~~~ 369 (431)
T cd02188 305 TATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASI----------QVALSKKSPYVPT-----AHRV 369 (431)
T ss_pred cCCCccchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCE----------EEEEeccCCccCC-----CCce
Confidence 44 78999999999999888777 55 67787777788999999999 8999999886432 3578
Q ss_pred eeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCC---hhhHHHHHHHHHHHHHHH
Q psy6839 188 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 246 (264)
Q Consensus 188 S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGme---e~eF~eA~~~le~li~eY 246 (264)
++++++|+|+|.++|+++.+||++||+||||||||+++||| ++||+||+++|++|+++|
T Consensus 370 s~~~lsNst~I~~~f~~i~~kf~~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 370 SGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred eEEEecCChHHHHHHHHHHHHHHHHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999 999999999999999998
No 11
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.7e-49 Score=375.33 Aligned_cols=224 Identities=18% Similarity=0.269 Sum_probs=190.0
Q ss_pred EEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-
Q psy6839 4 VIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE- 74 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~- 74 (264)
++.+++-| +.-+++++|+|.|||+||++.+.+++|||+..+ |+ |+|++|+++||+++++||++|+..-.
T Consensus 104 i~~sl~GG--TGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~ 181 (379)
T cd02190 104 ILHSLGGG--TGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITSPYNSVLALRELIEHADCVLPIENQALVPFDAM 181 (379)
T ss_pred EEeecCCC--cchhHHHHHHHHHHHhcCccceEEEeecCCCCCCceecccHHHHHHHHHHHhCCeeEEeccHHHHHHHHH
Confidence 34444422 334667999999999999999999999998766 99 99999999999999999999983211
Q ss_pred --------hcCCCC----cccCCChhhccccCCCCCCcc--c------------c---------cccccccC------CC
Q psy6839 75 --------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------A---------NHRLWPEE------EN 113 (264)
Q Consensus 75 --------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~---------~~ql~~~~------~~ 113 (264)
+++|++ |.+|.|++++.++|||+|++| + + .+++++++ ++
T Consensus 182 N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~ 261 (379)
T cd02190 182 NSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADP 261 (379)
T ss_pred HHHHHhhhcCccceeecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCC
Confidence 455544 999999999999999999999 1 0 13344433 56
Q ss_pred CCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeee
Q psy6839 114 SNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCM 191 (264)
Q Consensus 114 ~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~ 191 (264)
+.+||||+++++||+..+.+ .+ +.+++++ ..|++|+|+++ ++++|+++|. +.++++++
T Consensus 262 ~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~--~~fv~W~p~~~----------~~~~~~~~~~--------~~~~s~~~ 321 (379)
T cd02190 262 KHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGW----------KIGLCSVPPV--------GHSYSLLC 321 (379)
T ss_pred CcchHHHHHHHHcCCCCHHHHHHHHHHHhcc--CcCcCcCCCcE----------EEeecccCCC--------CcceeEEE
Confidence 78999999999999877666 45 6666554 78999999998 7889998874 36889999
Q ss_pred ecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy6839 192 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 249 (264)
Q Consensus 192 LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~ 249 (264)
++|+|+|..+|++++++|++||+||||||||+++||||+||+||+++|++|+++|+++
T Consensus 322 lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 322 LANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred ecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999874
No 12
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.5e-49 Score=382.07 Aligned_cols=214 Identities=16% Similarity=0.203 Sum_probs=187.6
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCCC-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHHh------------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINNL-------NQ-DTLAQIEENSNGTSILAEDEFYDAVES------------ 75 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~s------------ 75 (264)
-|++++|+|.|||+||++.+.+++|||+..+ |+ |||++|+++||+++++|||+|++||.+
T Consensus 146 SGlgs~lle~l~d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~ 225 (465)
T PTZ00387 146 SGLGTRILGMLEDEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKG 225 (465)
T ss_pred hhHHHHHHHHHHHhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccc
Confidence 4556999999999999999999999998755 99 999999999999999999999999952
Q ss_pred ------------------------------------cCCCC----cccCCChhhccccCCCCCCcc--c-----------
Q psy6839 76 ------------------------------------GSQNS----EDLGSSRKSSIVSLIPAPSSA--T----------- 102 (264)
Q Consensus 76 ------------------------------------~~t~s----~~ln~~l~~l~~nLvP~P~lh--t----------- 102 (264)
++|++ |.+|.|++++.+||||+|++| +
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~ 305 (465)
T PTZ00387 226 NIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKD 305 (465)
T ss_pred cccccccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhh
Confidence 23333 889999999999999999999 1
Q ss_pred -cc---------ccccccC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccc
Q psy6839 103 -AN---------HRLWPEE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLW 164 (264)
Q Consensus 103 -~~---------~ql~~~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~ 164 (264)
.+ ++++.++ +++.++|||+++++||+..+.+ .+ +.+++ +.+.|++|+|+++
T Consensus 306 ~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk--~~~~f~~W~p~~~--------- 374 (465)
T PTZ00387 306 VAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLK--EQLNMIYWNEDGF--------- 374 (465)
T ss_pred cccccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHh--ccccccccCCCce---------
Confidence 01 3344443 5678999999999999987767 54 66665 3489999999999
Q ss_pred cceeeecCCCCCCCCCcccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHH
Q psy6839 165 PEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 244 (264)
Q Consensus 165 ~kv~l~~~~p~~~~~~~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~ 244 (264)
|+++|+++|. +.++++++|+|+|+|..+|++++++|++||+||||||||+ +|||++||+||+++|++|++
T Consensus 375 -~~~~~~~~~~--------~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~ 444 (465)
T PTZ00387 375 -KTGLCNVSPL--------GQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLID 444 (465)
T ss_pred -EEEeeccCCC--------CCceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHH
Confidence 8999999885 3578999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHc
Q psy6839 245 DYEEVG 250 (264)
Q Consensus 245 eY~~~~ 250 (264)
+|++++
T Consensus 445 ~Y~~~~ 450 (465)
T PTZ00387 445 DYAYLQ 450 (465)
T ss_pred HHHHHh
Confidence 999997
No 13
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.3e-46 Score=356.17 Aligned_cols=213 Identities=28% Similarity=0.455 Sum_probs=184.9
Q ss_pred chhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-------------
Q psy6839 17 FIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE------------- 74 (264)
Q Consensus 17 ~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~------------- 74 (264)
+++++++|.|||+||++.+++++|||+..+ |+ |+|++|.++||+++++||++|+++|.
T Consensus 105 G~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~ 184 (382)
T cd06059 105 GLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDL 184 (382)
T ss_pred hHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHH
Confidence 555999999999999999999999998755 99 99999999999999999999999986
Q ss_pred --------hcCCCC----cccCCChhhccccCCCCCCcc--c------------c---------cccccccC------CC
Q psy6839 75 --------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T------------A---------NHRLWPEE------EN 113 (264)
Q Consensus 75 --------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t------------~---------~~ql~~~~------~~ 113 (264)
++++.+ |.+|.|++++.++|||+|++| + . .++|+.++ ++
T Consensus 185 N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (382)
T cd06059 185 NNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDP 264 (382)
T ss_pred HHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCC
Confidence 233333 889999999999999999999 1 0 15566555 56
Q ss_pred CCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeee
Q psy6839 114 SNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCM 191 (264)
Q Consensus 114 ~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~ 191 (264)
+.++||+++.++||+..+.+ .+ +.+++.+.... +|+|+++ ++++|+++|.. +.++++++
T Consensus 265 ~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~--~w~p~~~----------~~~~~~~~~~~-------~~~~s~~~ 325 (382)
T cd06059 265 TKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGF----------KVSNCKKPPRA-------ELGKSALF 325 (382)
T ss_pred CcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc--cCCCCcE----------EEEecCCCCCc-------CcceeEEE
Confidence 78999999999999987666 44 65665554333 8999999 89999998751 36889999
Q ss_pred ecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHH
Q psy6839 192 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 248 (264)
Q Consensus 192 LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~ 248 (264)
++|+|+|..+|+++.++|++||+||||||||+++||||+||.||++++++|+++|++
T Consensus 326 l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 326 LSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred ecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999974
No 14
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=3e-46 Score=359.78 Aligned_cols=213 Identities=19% Similarity=0.236 Sum_probs=180.5
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCCC-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-------------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINNL-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE------------- 74 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~------------- 74 (264)
-++|++|+|.|||+||++.+.+++|||+..+ |+ |+|++|++++|+++++||++|+++|+
T Consensus 141 SG~gs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~ 220 (446)
T cd02189 141 SGLGSRVTELLRDEYPESLLLNIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDI 220 (446)
T ss_pred hHHHHHHHHHHHHhcCccceeeeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHH
Confidence 3556999999999999999999999997755 99 99999999999999999999999997
Q ss_pred --------hcCCCC------------cccCCChhhccccCCCCCCcc--c------------cc------------cccc
Q psy6839 75 --------SGSQNS------------EDLGSSRKSSIVSLIPAPSSA--T------------AN------------HRLW 108 (264)
Q Consensus 75 --------s~~t~s------------~~ln~~l~~l~~nLvP~P~lh--t------------~~------------~ql~ 108 (264)
+.++.+ |.+|.++++++++|||+|++| + .+ .||+
T Consensus 221 N~~Ia~~l~~~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~ 300 (446)
T cd02189 221 NKVIAHQLASLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQML 300 (446)
T ss_pred HHHHHHHHHHHhhHhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhh
Confidence 223322 347999999999999999999 1 01 3343
Q ss_pred ccC-------------------------CCCCCcccchhhccccCcccCCCCccccccCccccccccCCCCCcccccccc
Q psy6839 109 PEE-------------------------ENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRL 163 (264)
Q Consensus 109 ~~~-------------------------~~~~~~~Ls~~~i~RG~~~~~~~~~~~i~~~~~~~fv~W~p~~~~~~~~~~~ 163 (264)
.++ +++.++|||+++++||+....+. ..++ ++.+.|++|+|+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~-~~~~--~~~~~f~~W~p~~~-------- 369 (446)
T cd02189 301 IAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSAD-ERKF--RDPLLYVNWSPSPV-------- 369 (446)
T ss_pred ccccccccccccccccccccccccccccCCcccceeeeeeeeeCCCchHHH-HHHH--hccCcCCCcCCCCE--------
Confidence 332 24578999999999998754441 1223 46689999999999
Q ss_pred ccceeeecCCCCCCCCCcccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHH
Q psy6839 164 WPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 243 (264)
Q Consensus 164 ~~kv~l~~~~p~~~~~~~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li 243 (264)
++++|+++|.. .+.++++++++|+|+|..+|+++++||++||+||||||||+++||||+||.||+++|++|+
T Consensus 370 --~~~~~~~~~~~------~~~~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li 441 (446)
T cd02189 370 --RFSISSHKRSF------SKYEKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQII 441 (446)
T ss_pred --eeeecCCCCCc------CCcceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHH
Confidence 78899888752 1468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy6839 244 KDYE 247 (264)
Q Consensus 244 ~eY~ 247 (264)
++|+
T Consensus 442 ~~Y~ 445 (446)
T cd02189 442 ASYK 445 (446)
T ss_pred HHhc
Confidence 9996
No 15
>KOG1375|consensus
Probab=100.00 E-value=1.6e-44 Score=331.23 Aligned_cols=225 Identities=23% Similarity=0.402 Sum_probs=197.6
Q ss_pred EccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH---
Q psy6839 6 FGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE--- 74 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~--- 74 (264)
+|=++|+.-. ++++++||++||.+++.+++|+|+..+ |+ |++++|.+++|.++++||++|++||.
T Consensus 84 ~gggtGsg~g----t~l~~k~~ee~~d~i~~~~sv~ps~ksd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~l 159 (369)
T KOG1375|consen 84 LGGGTGSGMG----TLLISKIREEFPDRIMNTFSVVPSPKSDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTL 159 (369)
T ss_pred ccCccccCcc----hhhHHHHHHhccchhcccccccCcccccceecccccccchhhhhcCCCcccccccHHHHHHHhhhh
Confidence 3556666555 999999999999999999999998876 99 99999999999999999999999998
Q ss_pred -----hcCCCC----cccCCChhhccccCCCCCCcc---------c-----cc---------ccccccCC-CCCCcccch
Q psy6839 75 -----SGSQNS----EDLGSSRKSSIVSLIPAPSSA---------T-----AN---------HRLWPEEE-NSNGTSILA 121 (264)
Q Consensus 75 -----s~~t~s----~~ln~~l~~l~~nLvP~P~lh---------t-----~~---------~ql~~~~~-~~~~~~Ls~ 121 (264)
++.|.+ |.+|.|++++..|+||+|++| + ++ .|||+.++ -....||++
T Consensus 160 kl~~~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~eltqq~fdaknmm~a~dyLt~ 239 (369)
T KOG1375|consen 160 KLKTPSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMTACDYLTV 239 (369)
T ss_pred cccCCCCceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccccccccccccccccCcchhhhhhhhhh
Confidence 333333 999999999999999999999 0 11 67777661 122349999
Q ss_pred hhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeeeecCchHHH
Q psy6839 122 EDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 199 (264)
Q Consensus 122 ~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~LsNsTsI~ 199 (264)
+.++|| +.++ +. +..++.|....|++|+|+++ |+.+|..||. +.++|.+.++|+|+|.
T Consensus 240 a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~v----------ktavCdipp~--------glkms~tf~~n~taiq 299 (369)
T KOG1375|consen 240 AAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNV----------KTAVCDIPPG--------GLKMSSTFIGNNTAIQ 299 (369)
T ss_pred HHHhcc--chhhhHHHhhhccccCcchhhhhccccc----------ceeeccCCCc--------cccccccccccchhHH
Confidence 999999 6666 44 77789999999999999999 8889999997 4788999999999999
Q ss_pred HHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCc
Q psy6839 200 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSV 254 (264)
Q Consensus 200 ~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~~ 254 (264)
.+|+++.++|-.||+||||||||+++||+|+||+||..+++++|.+|+++.++..
T Consensus 300 elf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~ 354 (369)
T KOG1375|consen 300 ELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDAT 354 (369)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999965533
No 16
>KOG1376|consensus
Probab=100.00 E-value=8.1e-36 Score=273.50 Aligned_cols=210 Identities=44% Similarity=0.612 Sum_probs=182.1
Q ss_pred EEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH-
Q psy6839 5 IFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE- 74 (264)
Q Consensus 5 ~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~- 74 (264)
.||=++|+-|+ ++++|.|..+|+||....++|||.+.. |+ ||.+...+++|++++.||+++|+||+
T Consensus 139 s~GGgtGsg~~----s~lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~ 214 (407)
T KOG1376|consen 139 SFGGGTGSGLG----SLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRR 214 (407)
T ss_pred eccCCCcCCcc----chhhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhh
Confidence 46778889888 999999999999999999999998877 99 99999999999999999999999998
Q ss_pred --------------------hcCCCC----cccCCChhhccccCCCCCCccc---------------cc-ccccccC---
Q psy6839 75 --------------------SGSQNS----EDLGSSRKSSIVSLIPAPSSAT---------------AN-HRLWPEE--- 111 (264)
Q Consensus 75 --------------------s~~t~s----~~ln~~l~~l~~nLvP~P~lht---------------~~-~ql~~~~--- 111 (264)
|.+|++ |.+|.||.++.+||||+|-+++ .+ .+.|.+.
T Consensus 215 ~l~i~rPtyt~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVpyplyap~~s~~~a~he~~sv~~it~~~fe~~~qm 294 (407)
T KOG1376|consen 215 NLDIERPTYTNLNRLIAQVVSSITASLRFDGALNVDLTEFQTNLVPYPLYAPVISAEKAYHEQLSVAEITNACFEPANQM 294 (407)
T ss_pred ccccCCccccchhhhHHhhhcccccccccCCcccccHHHHHhhCCCCcccccchhhcccchhhhhHHhhccccccccccc
Confidence 556666 9999999999999999995331 01 2333332
Q ss_pred ---CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchh
Q psy6839 112 ---ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQ 186 (264)
Q Consensus 112 ---~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~ 186 (264)
+|+.+||++++++.||++.+++ .. ++.++.++.+.|++- .+|+.++++..
T Consensus 295 vkcDP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd~-------------------------~v~gg~lakv~ 349 (407)
T KOG1376|consen 295 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDT-------------------------VVPGGDLAKVQ 349 (407)
T ss_pred cccCCccchHHHHHHhccCCcCcccchHHHHhhhhcccccccee-------------------------eccCcchhhhc
Confidence 7899999999999999999999 55 777888888888762 12344566778
Q ss_pred ceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHH
Q psy6839 187 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 243 (264)
Q Consensus 187 ~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li 243 (264)
+..+||+|+|+|++...++..+|+.||.||||||||.+|||||+||.||+|.+..+.
T Consensus 350 Ravcmlsnttai~eawarld~kfdLmyakrafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 350 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred eeeEecCCCcHHHHHHhhcchhhhhhhcchheeeeccCCCccccchhhhhhhHHhhc
Confidence 899999999999999999999999999999999999999999999999999987764
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.88 E-value=7.5e-23 Score=190.02 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=128.6
Q ss_pred chhHhHHHHHHHHhCcceecEEEEEecCCC-------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH--------------
Q psy6839 17 FIPLLYFTFLREFFGTTLFQSHTIYHINNL-------NQ-DTLAQIEENSNGTSILAEDEFYDAVE-------------- 74 (264)
Q Consensus 17 ~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~-------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~-------------- 74 (264)
+++++++|.|||+||++.+.+++|||+... |+ |+|++|.++||+++++||++|+++|.
T Consensus 105 G~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N 184 (328)
T cd00286 105 GLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHIN 184 (328)
T ss_pred cHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHH
Confidence 455999999999999999999999998654 99 99999999999999999999999986
Q ss_pred -------hcCCCC----cccCCChhhccccCCCCCCcc--c-------c--------------cccccccC------CCC
Q psy6839 75 -------SGSQNS----EDLGSSRKSSIVSLIPAPSSA--T-------A--------------NHRLWPEE------ENS 114 (264)
Q Consensus 75 -------s~~t~s----~~ln~~l~~l~~nLvP~P~lh--t-------~--------------~~ql~~~~------~~~ 114 (264)
+.++.+ |.+|.|++++.++|+|+|++| + . .++++.+. +++
T Consensus 185 ~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (328)
T cd00286 185 ELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPT 264 (328)
T ss_pred HHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCC
Confidence 233333 889999999999999999999 1 0 14444443 356
Q ss_pred CCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeeee
Q psy6839 115 NGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCML 192 (264)
Q Consensus 115 ~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~L 192 (264)
.+++++++.++||+...++ .+ +..++.+.++. +|+|+++ ++++|..+|.. +.+.++++|
T Consensus 265 ~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~~~--~w~~~~~----------~~~~~~~~~~~-------~~~~~~~~l 325 (328)
T cd00286 265 HGGYIAALLLVRGPVSPSEVREGIARVAPRTSHL--SWSPPGI----------KVGVSPTPPAS-------EHKVSALLL 325 (328)
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcCCCCE----------eEeecCCCCCC-------CcCeEEEEe
Confidence 7899999999999876556 44 55565554443 8999999 78898877641 257889999
Q ss_pred cCc
Q psy6839 193 SNT 195 (264)
Q Consensus 193 sNs 195 (264)
+|+
T Consensus 326 ~Ns 328 (328)
T cd00286 326 SNS 328 (328)
T ss_pred ccC
Confidence 996
No 18
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.67 E-value=1.4e-17 Score=134.91 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=72.6
Q ss_pred ccccccC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCC
Q psy6839 105 HRLWPEE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTV 176 (264)
Q Consensus 105 ~ql~~~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~ 176 (264)
+++|+++ +++.|+|||+++++||+++++| .+ +.+++.+..+.|++|+|+++ |+++|+++|..
T Consensus 31 ~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~Fv~W~p~~~----------kv~~~~~~p~~ 100 (126)
T PF03953_consen 31 RQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQFVDWIPTGF----------KVGICKVPPYG 100 (126)
T ss_dssp HHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTSB-SSSTTCE----------EEEEESS-STS
T ss_pred HHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccceeeecCchh----------hcccccCCCcc
Confidence 5566655 6778999999999999998888 66 88898888899999999999 89999999987
Q ss_pred CCCCcccchhceeeeecCchHHHHHHHHhH
Q psy6839 177 VPGGDLAKVQRAVCMLSNTTAIAEAWARLD 206 (264)
Q Consensus 177 ~~~~~~~~~~~S~~~LsNsTsI~~~l~~i~ 206 (264)
.+. .++||+||+|+|+|.+.|+++.
T Consensus 101 ~~~-----s~~s~~~LsNsTaI~~~f~~i~ 125 (126)
T PF03953_consen 101 QPN-----SDRSGLMLSNSTAIAEVFSRIS 125 (126)
T ss_dssp TTT-----SSEEEEEEEEEGGGHHHHHHHH
T ss_pred cCC-----CcceEEEeCChHHHHHHHHHhc
Confidence 652 3688999999999999999986
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.14 E-value=6.7e-11 Score=103.95 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=54.6
Q ss_pred chhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccHHHHHHHHhcC
Q psy6839 17 FIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAEDEFYDAVESGS 77 (264)
Q Consensus 17 ~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~s~~ 77 (264)
+++++|++.|||+||++.+.+++|+|+... |+ ++|++|.+++|+++++||++|+++|...+
T Consensus 140 G~~~~l~~~l~~~y~~~~~~~~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l 207 (216)
T PF00091_consen 140 GLGPVLAEMLREEYPKKPIISFSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQL 207 (216)
T ss_dssp HHHHHHHHHHHHTSTTSEEEEEEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTS
T ss_pred ccccccchhhhccccccceeeccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccC
Confidence 455999999999999999999999998643 99 99999999999999999999999997433
No 20
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=98.88 E-value=5e-08 Score=95.60 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=51.7
Q ss_pred eeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHH
Q psy6839 189 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 247 (264)
Q Consensus 189 ~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~ 247 (264)
+.-|.+++++...|+.+..+..++=-+| .|.|...|+|++||+|+.+.|.++.+.|+
T Consensus 436 ~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~~~~~~g~e~de~~e~le~L~~~~~~Y~ 492 (493)
T cd06060 436 LAALQSSPSLGEMLESLHRQLSKLDLRR--KASFFESGLEEDEYKELLEQLLDLAECYE 492 (493)
T ss_pred hhhhcCchHHHHHHHHHHHHHHhhhhHh--hhcccccccCHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999999999999997777 66899999999999999999999999996
No 21
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=98.80 E-value=6.5e-09 Score=89.83 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=54.5
Q ss_pred ccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccHHHHHHHHhcC
Q psy6839 9 AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAEDEFYDAVESGS 77 (264)
Q Consensus 9 ~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~s~~ 77 (264)
+||+-++ ++++|.+| +||+.. .+++|+|.... |+ ++|++|.+++|+++++|||+|.++|...+
T Consensus 95 GTGsG~~----~~i~~~~~-~~~~~~-~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~ 164 (192)
T smart00864 95 GTGTGAA----PVIAEIAK-EYGILT-VAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNL 164 (192)
T ss_pred CccccHH----HHHHHHHH-HcCCcE-EEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccC
Confidence 3555555 99999999 999888 99999995433 99 99999999999999999999999997543
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.77 E-value=9.5e-09 Score=96.79 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=66.3
Q ss_pred cchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH--------------
Q psy6839 16 FFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAEDEFYDAVE-------------- 74 (264)
Q Consensus 16 ~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~-------------- 74 (264)
.+++.+++|.+||+|| +.+.+++|+|+... |+ +++++|.+++|++++||||+|+++|.
T Consensus 113 sG~~p~iae~lke~~~-~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~~~~~f~~~N~~Ia 191 (349)
T cd02202 113 SGGAPVLAKELKERYE-EPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKGESVEEAYDRINEEIA 191 (349)
T ss_pred ccHHHHHHHHHHHhCC-ccEEEEEEecCCCCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccchHHHHHHHHHHHH
Confidence 3445999999999999 88999999998765 99 99999999999999999999988763
Q ss_pred ---hcCC---------CCcccCCChhhccccCCCC
Q psy6839 75 ---SGSQ---------NSEDLGSSRKSSIVSLIPA 97 (264)
Q Consensus 75 ---s~~t---------~s~~ln~~l~~l~~nLvP~ 97 (264)
+.++ .+|.+|.|++++.++|-+.
T Consensus 192 ~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 192 RRIGLLLRAGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred HHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC
Confidence 1121 2377888888887777543
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.60 E-value=5.9e-08 Score=89.82 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=48.5
Q ss_pred ccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH
Q psy6839 9 AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE 74 (264)
Q Consensus 9 ~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~ 74 (264)
+||+-++ .++++.++|.|+ .+++|+|.+.. |+ +++++|.+++|+++++||++|.++|.
T Consensus 97 GTGSG~a----p~ia~~~ke~~~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~ 163 (303)
T cd02191 97 GTGTGGA----PVVAEHLKRIGT----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGE 163 (303)
T ss_pred ccchhHH----HHHHHHHHHhCC----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhh
Confidence 4555554 999999999997 46666665533 99 99999999999999999999999985
No 24
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.20 E-value=1.6e-06 Score=82.61 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=52.0
Q ss_pred EEEcc--ccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH
Q psy6839 4 VIFGL--AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAEDEFYDAVE 74 (264)
Q Consensus 4 ~~~~~--~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~ 74 (264)
++.|+ +||+-++ .++.+.++| ++ ......++.|+... |+ ++|++|.+++|+++++|||+|.++|.
T Consensus 118 I~aGLGGGTGSGaa----pvIa~iake-~g-~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~~ 191 (378)
T PRK13018 118 VTAGMGGGTGTGAA----PVVAEIAKE-QG-ALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIVP 191 (378)
T ss_pred EEeeccCcchhhHH----HHHHHHHHH-cC-CCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHHh
Confidence 34444 4666555 899999987 54 44567789998754 99 99999999999999999999999874
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.15 E-value=3e-06 Score=78.36 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=43.7
Q ss_pred ccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH
Q psy6839 9 AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAEDEFYDAVE 74 (264)
Q Consensus 9 ~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~ 74 (264)
+||+-++ .++.+ +..+|+. ......+.|+... |+ +++++|.+++|+++++||++|.++|.
T Consensus 97 GTGSG~a----p~ia~-~a~e~g~-~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~ 163 (304)
T cd02201 97 GTGTGAA----PVIAK-IAKEMGA-LTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVD 163 (304)
T ss_pred CcchhHH----HHHHH-HHHHcCC-CEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhc
Confidence 4666655 66555 5556763 3334444444433 99 99999999999999999999999986
No 26
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=98.11 E-value=3.6e-06 Score=79.46 Aligned_cols=58 Identities=9% Similarity=0.133 Sum_probs=43.1
Q ss_pred ccccccccchhHhHHHHHHHHhCcceecEEEEEecC--CC------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH
Q psy6839 9 AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHIN--NL------NQ-DTLAQIEENSNGTSILAEDEFYDAVE 74 (264)
Q Consensus 9 ~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~--~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~ 74 (264)
+||+-++ .+ +..+..+|+ +.+++|+|.+ .. |+ ++|++|.+++|+++++|||+|.++|.
T Consensus 114 GTGSG~a----pv-ia~~ake~~---~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~ 180 (349)
T TIGR00065 114 GTGTGAA----PV-VAKIAKELG---ALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVP 180 (349)
T ss_pred ccchhHH----HH-HHHHHHHcC---CCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhc
Confidence 4666554 54 455555676 4466665544 32 99 99999999999999999999999985
No 27
>PRK09330 cell division protein FtsZ; Validated
Probab=97.89 E-value=1.6e-05 Score=75.90 Aligned_cols=64 Identities=8% Similarity=0.185 Sum_probs=50.4
Q ss_pred EEEEcc--ccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHH
Q psy6839 3 VVIFGL--AFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYD 71 (264)
Q Consensus 3 ~~~~~~--~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~ 71 (264)
+++.|+ +||+-++ . ++..+..+|| +.+++|+|.+.. |+ ++|++|.+++|+++++|||+|.+
T Consensus 102 fI~AGmGGGTGTGaa----p-vIA~iake~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~ 173 (384)
T PRK09330 102 FITAGMGGGTGTGAA----P-VVAEIAKELG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLE 173 (384)
T ss_pred EEEecCCCcccHHHH----H-HHHHHHHHcC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHh
Confidence 344454 4555555 4 6788888887 668888876633 99 99999999999999999999999
Q ss_pred HHH
Q psy6839 72 AVE 74 (264)
Q Consensus 72 i~~ 74 (264)
+|.
T Consensus 174 ~~~ 176 (384)
T PRK09330 174 VVD 176 (384)
T ss_pred hcc
Confidence 875
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=96.61 E-value=0.002 Score=55.49 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=38.0
Q ss_pred chhHhHHHHHHHHhCccee-cEEEEEecCCC-------------Ch-hHHhHHhhcCCeeEEec
Q psy6839 17 FIPLLYFTFLREFFGTTLF-QSHTIYHINNL-------------NQ-DTLAQIEENSNGTSILA 65 (264)
Q Consensus 17 ~~~~llle~Lrd~Yp~~~~-~~~sV~P~~~~-------------Ns-Ltl~~L~e~sD~v~~~d 65 (264)
|+++-+||.|||||||+.+ +.+.+-|.... |. +++.+|.++|+..+++.
T Consensus 89 Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~ 152 (180)
T PF14881_consen 89 GFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLS 152 (180)
T ss_pred hHHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecC
Confidence 5568899999999999986 33333222211 99 99999999999999997
No 29
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=96.56 E-value=0.00026 Score=55.30 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=58.5
Q ss_pred cCCChhhccccCCCCCCccc-------c---------c--ccccccCCCC--C--CcccchhhccccCcccCC-CC-ccc
Q psy6839 83 LGSSRKSSIVSLIPAPSSAT-------A---------N--HRLWPEEENS--N--GTSILAEDEFYDAVESGS-QN-SED 138 (264)
Q Consensus 83 ln~~l~~l~~nLvP~P~lht-------~---------~--~ql~~~~~~~--~--~~~Ls~~~i~RG~~~~~~-~~-~~~ 138 (264)
+|.|++++.++|+|+|.+.. . . .+++++++.. . ..||++.. +....+ .+ +..
T Consensus 1 in~D~~dl~~~L~p~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~a~~~~~~l~~~~----~~~~~ev~~~~~~ 76 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKGVLVNITGGP----DLTLKEVNEAMER 76 (120)
T ss_pred CCCchHHHHHhccCCCeEEEEEEEecCCChHHHHHHHHHhCcccCCcchhhcCceEEEEEcCC----CCCHHHHHHHHHH
Confidence 58899999999999996551 0 0 2555543111 1 12555544 334444 44 566
Q ss_pred cccCcc-ccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeeeecC-chHHHHHHHHhH
Q psy6839 139 LGSSRK-SSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSN-TTAIAEAWARLD 206 (264)
Q Consensus 139 i~~~~~-~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~LsN-sTsI~~~l~~i~ 206 (264)
++++.. ..|+.|.|.... + ...++++++| +|+|...|+++.
T Consensus 77 i~~~~~~~~~v~w~~~~~~---------~------------------~~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 77 IREKADPDAFIIWGPVIDE---------E------------------LGGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHhcCCCceEEEccccCC---------c------------------CCCCcEEEEEEecccCccccccC
Confidence 665544 788999984320 1 1134789999 999999988764
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=93.81 E-value=0.12 Score=48.74 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=52.2
Q ss_pred EccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccHHHHHHH
Q psy6839 6 FGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAEDEFYDAV 73 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~ 73 (264)
||=+||...+ -.+.+.+++ .+......++.|.... |+ -.+..|-+++|.+|+++||.|.++.
T Consensus 105 ~GGGTGtGaa----PVvakiake--~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~ 173 (338)
T COG0206 105 MGGGTGTGAA----PVVAEIAKE--LGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGK 173 (338)
T ss_pred ecCCcccccc----HHHHHHHHh--cCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhcc
Confidence 5566777777 777777777 6777788899997755 99 9999999999999999999998864
No 31
>KOG2530|consensus
Probab=89.72 E-value=0.28 Score=47.60 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=42.3
Q ss_pred chhHhHHHHHHHHhCcceecEEEEEecCCC---------------Ch-hHHhHHhhcCCeeEEec
Q psy6839 17 FIPLLYFTFLREFFGTTLFQSHTIYHINNL---------------NQ-DTLAQIEENSNGTSILA 65 (264)
Q Consensus 17 ~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~---------------Ns-Ltl~~L~e~sD~v~~~d 65 (264)
++.+-++|.|+||||++.+.+..+.|-+.. |. |++++|.+.|+..+++-
T Consensus 219 G~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~ 283 (483)
T KOG2530|consen 219 GFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLS 283 (483)
T ss_pred hHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccc
Confidence 456899999999999999999999984322 88 99999999999888764
No 32
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=57.28 E-value=11 Score=32.39 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=37.2
Q ss_pred EEEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEeccH
Q psy6839 3 VVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILAED 67 (264)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~dNd 67 (264)
-+|.|.+.| |=. ...-++-.|+.+||+ +...+|.|+..- .. .-+..|.+.||-++++..+
T Consensus 45 ~fi~GgalG--~D~-waae~vl~LK~~yp~--ikL~~v~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 45 WFITGGALG--VDL-WAAEVVLELKKEYPE--IKLALVLPFENQGNNWNEANQERYQSILEQADFVVVVSER 111 (177)
T ss_dssp EEEE---TT--HHH-HHHHHHHTTTTT-TT---EEEEEESSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSS
T ss_pred EEEECCccc--HHH-HHHHHHHHHHhhhhh--eEEEEEEcccchhhcCCHHHHHHHHHHHHhCCEEEEccCC
Confidence 356677666 321 224455667999997 445889998755 34 8889999999999888654
No 33
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=53.06 E-value=11 Score=32.06 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=25.4
Q ss_pred hhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHcc
Q psy6839 213 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM 251 (264)
Q Consensus 213 f~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~ 251 (264)
|..-.||+||.+|+.+|+ ..+.+|++.++.+..
T Consensus 114 ~~T~nFLqWfv~EQ~eEe------~l~~~I~d~~~~ag~ 146 (167)
T COG1528 114 YATFNFLQWFVAEQVEEE------KLFKTILDKLELAGN 146 (167)
T ss_pred hhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Confidence 455889999999988764 466788888888743
No 34
>PRK13660 hypothetical protein; Provisional
Probab=44.62 E-value=43 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=41.6
Q ss_pred EEEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC------Ch-hHHhHHhhcCCeeEEec
Q psy6839 3 VVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL------NQ-DTLAQIEENSNGTSILA 65 (264)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~------Ns-Ltl~~L~e~sD~v~~~d 65 (264)
-+|+|.+.|.=.. ..-++-.|+++||.. .-.+|+|+..- .. --++++...||-|+++.
T Consensus 45 wfi~ggalG~d~w---AaEvvl~LK~~yp~l--kL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs 109 (182)
T PRK13660 45 WVIISGQLGVELW---AAEVVLELKEEYPDL--KLAVITPFEEHGENWNEANQEKLANILKQADFVKSIS 109 (182)
T ss_pred EEEECCcchHHHH---HHHHHHHHHhhCCCe--EEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEec
Confidence 4677777664322 356777899999964 46678897754 33 77889999999998774
No 35
>KOG2794|consensus
Probab=43.92 E-value=42 Score=31.05 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=36.4
Q ss_pred cEEEEcc-------cccccc--ccchhHhHHHHHHHHhCcceec-EEEEEecCCC------------Ch-hHHhHHhhcC
Q psy6839 2 SVVIFGL-------AFGLYF--TFFIPLLYFTFLREFFGTTLFQ-SHTIYHINNL------------NQ-DTLAQIEENS 58 (264)
Q Consensus 2 ~~~~~~~-------~~~~~~--~~~~~~llle~Lrd~Yp~~~~~-~~sV~P~~~~------------Ns-Ltl~~L~e~s 58 (264)
||++||. .+|+.- --+.--.-+..|||.||+-.+. -.++-||++. |- =|.++|.+.|
T Consensus 85 sViLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv~rlaevA 164 (340)
T KOG2794|consen 85 SVILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESVHRLAEVA 164 (340)
T ss_pred eEEEecCCCccccCcccccccCCCCcHHHHHHHHHHhCcceEEEeeeeeccccCCCccceecccccccCHHHHHHHHHHH
Confidence 6888887 233321 1123345678899999998774 4667787754 55 6666666653
No 36
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=35.91 E-value=15 Score=17.23 Aligned_cols=8 Identities=50% Similarity=0.837 Sum_probs=6.1
Q ss_pred ccCCCCCC
Q psy6839 92 VSLIPAPS 99 (264)
Q Consensus 92 ~nLvP~P~ 99 (264)
+-|||||+
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45889987
No 37
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=30.39 E-value=92 Score=24.16 Aligned_cols=56 Identities=25% Similarity=0.349 Sum_probs=37.8
Q ss_pred eeeecCchHHHHHHHHhHH-------HHHHHhhhhcceeccccCCCC--hhhHHHHHHHHHHHHHHHHHH
Q psy6839 189 VCMLSNTTAIAEAWARLDH-------KFDLMYAKRAFVHWYVGEGME--EGEFSEAREDLAALEKDYEEV 249 (264)
Q Consensus 189 ~~~LsNsTsI~~~l~~i~~-------~f~~mf~krAfLH~Y~~eGme--e~eF~eA~~~le~li~eY~~~ 249 (264)
|--++|.++|.++|..+.. .-.++=.+|+|. ||+. -....||+..++.+-+++.+=
T Consensus 25 GrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 25 GRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp T--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668999999999998654 334444556543 2332 456899999999999998764
No 38
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=29.68 E-value=1.7e+02 Score=28.36 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=33.6
Q ss_pred cEEEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCCCh-hHHhHHhhcCCeeEEeccH
Q psy6839 2 SVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQ-DTLAQIEENSNGTSILAED 67 (264)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~Ns-Ltl~~L~e~sD~v~~~dNd 67 (264)
.|+|+| |||| ||+-.++-+| ++|+++.+.....-+ |. +-..+..+..-..+++.++
T Consensus 3 ~i~IlG-sTGS-----IG~qtL~Vi~-~~~~~f~v~~Laa~~---n~~~L~~q~~~f~p~~v~i~d~ 59 (389)
T TIGR00243 3 QIVILG-STGS-----IGKSTLDVVR-HNPDHFQVVALSAGK---NVALMVEQILEFRPKFVAIDDE 59 (389)
T ss_pred eEEEEe-cChH-----HHHHHHHHHH-hCccccEEEEEEcCC---CHHHHHHHHHHcCCCEEEEcCH
Confidence 578888 5665 7888888887 478765444333211 66 6666666554444444333
No 39
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=27.94 E-value=52 Score=18.60 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy6839 229 EGEFSEAREDLAALEKDYE 247 (264)
Q Consensus 229 e~eF~eA~~~le~li~eY~ 247 (264)
.+++++|.+.++.++++|-
T Consensus 13 ~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HCHHHHHHHHHHHHHHHST
T ss_pred ccCHHHHHHHHHHHHHHCc
Confidence 3578999999999998873
No 40
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=26.76 E-value=2.1e+02 Score=24.01 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=45.6
Q ss_pred CcEEEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCCCh-hHHhHHhhcCCeeEEec
Q psy6839 1 MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQ-DTLAQIEENSNGTSILA 65 (264)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~Ns-Ltl~~L~e~sD~v~~~d 65 (264)
|.++|.||+-=+.===++|..+.|+|...|-... +.-|.=- |.. +-+...+...|.++++|
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~--~v~vid~--Gt~~~~l~~~l~~~d~vIIVD 63 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPE--NVEVIDG--GTAGPNLLGLLAGYDPVIIVD 63 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCC--CeEEEEc--CCCcHHHHHHhcCCCcEEEEE
Confidence 6789999987666556788999999999885443 2223322 256 78888899999999998
No 41
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=26.05 E-value=1.6e+02 Score=22.39 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=41.2
Q ss_pred ceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCC-----CChhhHHHHHHHHHHH
Q psy6839 187 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG-----MEEGEFSEAREDLAAL 242 (264)
Q Consensus 187 ~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eG-----mee~eF~eA~~~le~l 242 (264)
.-.+++..+.......++|.++|.- ++.|.=.|..+| .+++|+++|.....+.
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~---~~~~~iKykDEGD~iti~sq~DLd~Ai~~a~~~ 70 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGF---KRRLKIKMKDDGDMITMGDQDDLDMAIDTARSE 70 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC---CCceEEEEEcCCCCccccCHHHHHHHHHHHHHH
Confidence 4467888889999999999999874 467877888886 3588888888776653
No 42
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=25.94 E-value=2.1e+02 Score=23.68 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=40.4
Q ss_pred CcEEEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCCCh--hHHhHHhhcCCeeEEec
Q psy6839 1 MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQ--DTLAQIEENSNGTSILA 65 (264)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~Ns--Ltl~~L~e~sD~v~~~d 65 (264)
|.++|.|++--+.===++|..+.+.|++.|+... +..|+-- .+ +.+-..++.+|.++++|
T Consensus 1 m~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~--~v~vid~---gt~~~~ll~~l~~~d~vIiVD 62 (164)
T PRK10466 1 MRILVLGVGNILLTDEAIGVRIVEALEQRYILPD--YVEILDG---GTAGMELLGDMANRDHLIIAD 62 (164)
T ss_pred CceEEEEECchhhccCcHHHHHHHHHHHhcCCCC--CeEEEec---cccHHHHHHHHhCCCEEEEEE
Confidence 6678888875554445788999999988764211 1223322 23 55666667899999999
No 43
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=25.68 E-value=29 Score=28.29 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=18.9
Q ss_pred hhhcceeccccCCCChhhHHHHHHHHHHHH
Q psy6839 214 AKRAFVHWYVGEGMEEGEFSEAREDLAALE 243 (264)
Q Consensus 214 ~krAfLH~Y~~eGmee~eF~eA~~~le~li 243 (264)
+|++|| ++-|++++|.++|+....+-.
T Consensus 25 ~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 25 KKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 678888 456999999999999877655
No 44
>KOG3975|consensus
Probab=23.89 E-value=43 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=36.8
Q ss_pred CcEEEEccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCCChhHHhHHhhcCCeeE
Q psy6839 1 MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTS 62 (264)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~NsLtl~~L~e~sD~v~ 62 (264)
+-++|+|=|.|+|++ ..+++.++++++ ..-.+.+||- ..++.|.-+++.
T Consensus 110 ~ki~iiGHSiGaYm~----Lqil~~~k~~~~--vqKa~~LFPT-------IerM~eSpnG~~ 158 (301)
T KOG3975|consen 110 RKIYIIGHSIGAYMV----LQILPSIKLVFS--VQKAVLLFPT-------IERMHESPNGIR 158 (301)
T ss_pred CEEEEEecchhHHHH----HHHhhhcccccc--eEEEEEecch-------HHHHhcCCCceE
Confidence 358999999999999 778888888876 2336778884 567777666553
No 45
>PRK04940 hypothetical protein; Provisional
Probab=23.56 E-value=27 Score=30.09 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=27.0
Q ss_pred EEEEccccccccccchhHhHHHHHHHHhC-cceecEEEEEecC
Q psy6839 3 VVIFGLAFGLYFTFFIPLLYFTFLREFFG-TTLFQSHTIYHIN 44 (264)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~llle~Lrd~Yp-~~~~~~~sV~P~~ 44 (264)
+++.|-|.|.||. +.|.+.|. +..++|-+|.|+.
T Consensus 62 ~~liGSSLGGyyA--------~~La~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 62 PLICGVGLGGYWA--------ERIGFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred cEEEEeChHHHHH--------HHHHHHHCCCEEEECCCCChHH
Confidence 6788888888887 66677787 6677899998874
No 46
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=21.37 E-value=1.8e+02 Score=27.37 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=32.5
Q ss_pred cEEEEcc---------ccccccccchhHhHHHHHHHHhCccee-cEEEEEecCCC
Q psy6839 2 SVVIFGL---------AFGLYFTFFIPLLYFTFLREFFGTTLF-QSHTIYHINNL 46 (264)
Q Consensus 2 ~~~~~~~---------~~~~~~~~~~~~llle~Lrd~Yp~~~~-~~~sV~P~~~~ 46 (264)
+|.+||. +...+--=++-..-+..|+++||+..+ .-.+.-||++.
T Consensus 70 ~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~h 124 (320)
T cd04823 70 AVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSH 124 (320)
T ss_pred EEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCC
Confidence 5788887 334444445667889999999999855 45677788754
Done!