RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6839
(264 letters)
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 203 bits (518), Expect = 6e-63
Identities = 81/96 (84%), Positives = 88/96 (91%)
Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
GINYQPPTVVPGGDLAKVQRAVCM+SN+TAIAE ++R+DHKFDLMYAKRAFVHWYVGEG
Sbjct: 353 CGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412
Query: 227 MEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAE 262
MEEGEFSEAREDLAALEKDYEEVG +S + EGE
Sbjct: 413 MEEGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 203 bits (517), Expect = 1e-62
Identities = 84/99 (84%), Positives = 93/99 (93%)
Query: 166 EVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 225
+ GINYQPPTVVPGGDLAKVQRAVCM+SN+TA+AE ++R+DHKFDLMYAKRAFVHWYVGE
Sbjct: 352 KCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGE 411
Query: 226 GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 264
GMEEGEFSEAREDLAALEKDYEEVG +S EGEG+ EEY
Sbjct: 412 GMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEEY 450
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 199 bits (507), Expect = 2e-61
Identities = 81/83 (97%), Positives = 83/83 (100%)
Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAW+RLDHKFDLMY+KRAFVHWYVGEG
Sbjct: 352 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 411
Query: 227 MEEGEFSEAREDLAALEKDYEEV 249
MEEGEFSEAREDLAALEKDYEEV
Sbjct: 412 MEEGEFSEAREDLAALEKDYEEV 434
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 142 bits (359), Expect = 1e-39
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 5/98 (5%)
Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
V I +PP+ + A+V + CMLSNTT+IAEA+ R+D +FDLM+ KRAF+HWYVGEG
Sbjct: 351 VAICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEG 405
Query: 227 MEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 264
MEEGEFSEARED+A LE++YE DS + E EE
Sbjct: 406 MEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 95.4 bits (238), Expect = 9e-23
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
V +PP A++ ++ LSN+T+I E+ RL KFD +Y ++AF+HWY+GEG
Sbjct: 308 VSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEG 360
Query: 227 MEEGEFSEAREDLAALEKDYEE 248
M+E EF+EA L L + Y+E
Sbjct: 361 MDEMEFTEAESSLEDLIQSYQE 382
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 71.5 bits (176), Expect = 3e-14
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 192 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 248
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 367 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 423
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 71.0 bits (174), Expect = 4e-14
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 194 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 253
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ +
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
Query: 254 VEGEGEGAEE 263
+ EGE +E
Sbjct: 430 ADEEGEYEDE 439
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 70.2 bits (172), Expect = 8e-14
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 185 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 244
++ +V + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 361 LKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 245 DYEEVGMDSVEGEGEGAEE 263
+Y++ +VE EGE EE
Sbjct: 421 EYQQYQDATVEEEGEFDEE 439
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 57.2 bits (139), Expect = 1e-10
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDH 207
V I PP +PG D++ ML+NTTAI E + R+
Sbjct: 91 VAICDVPPYGLPGSDVS-----GLMLANTTAIQELFKRILE 126
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 54.6 bits (132), Expect = 1e-08
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 186 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 245
++ L+N T I + L +F +Y ++A +H Y GME+G+F+EA E ++ L +
Sbjct: 316 SYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDE 375
Query: 246 YEEV 249
Y+ +
Sbjct: 376 YDYL 379
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 48.5 bits (116), Expect = 1e-06
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 189 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE---KD 245
V ++SN+ I + + K M+A A++H Y G+EE +F + A LE
Sbjct: 387 VTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDF---LDAFATLEQIIAS 443
Query: 246 YEE 248
Y+
Sbjct: 444 YKN 446
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 45.5 bits (108), Expect = 2e-05
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 186 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 245
++ L+N I + + +F+ +Y +++ VH Y E +E+ F E E + L D
Sbjct: 387 PYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDD 445
Query: 246 YEEV 249
Y +
Sbjct: 446 YAYL 449
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 44.9 bits (107), Expect = 2e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 191 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDY 246
ML+N T+IA + R+ +FD + +RAF+ Y E M EF E+RE + +L ++Y
Sbjct: 373 MLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431
>gnl|CDD|220606 pfam10160, Tmemb_40, Predicted membrane protein. This is a region
of 280 amino acids from a group of proteins conserved
from plants to humans. It is predicted to be a membrane
protein but its function is otherwise unknown.
Length = 261
Score = 39.4 bits (92), Expect = 9e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 5 IFGLAFGLYFTFFIPLLYFTFLREFFGT 32
++G+ YF ++PLLY TFL +FF
Sbjct: 223 LYGVTTFCYFALYLPLLYVTFLADFFQE 250
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 35.6 bits (82), Expect = 0.024
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 191 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 246
ML+N T+I +++ ++D + K+AF+ Y M + EF E+RE + +L +Y
Sbjct: 379 MLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEY 438
>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
Length = 309
Score = 31.7 bits (72), Expect = 0.39
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 146 SIVSLIPAPS--SATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNT-TAIAEA 201
I +L APS SAT +++PE + P PGG V RA+ L + TAI A
Sbjct: 3 RIYTLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPA 61
>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family. In vertebrates, secretory
carrier membrane proteins (SCAMPs) 1-3 constitute a
family of putative membrane-trafficking proteins
composed of cytoplasmic N-terminal sequences with NPF
repeats, four central transmembrane regions (TMRs), and
a cytoplasmic tail. SCAMPs probably function in
endocytosis by recruiting EH-domain proteins to the
N-terminal NPF repeats but may have additional
functions mediated by their other sequences.
Length = 177
Score = 29.1 bits (66), Expect = 1.7
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 1 MSVVIFGLAFGLYFTFFIPLLYF 23
FGL+ LYF P +
Sbjct: 63 GGGTDFGLSI-LYFILGTPGSFV 84
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 28.7 bits (64), Expect = 2.2
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 144 KSSIVSLIPAPSSATANHRLWPEVGINYQPPTV-VPGGDLAKVQRAVCMLSNTTA--IAE 200
K++ V ++ ++ W + Y+P + + GG+L +V A +L N T E
Sbjct: 38 KTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDE 97
Query: 201 AWARLDHKFDLMYAK 215
A LD + L A+
Sbjct: 98 PSAYLDIEQRLNAAR 112
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears to
be present in all complete eubacterial genomes so far,
as well as Saccharomyces cerevisiae. A subset of these
organisms have a closely related protein. GidA is absent
in the Archaea. It appears to act with MnmE, in an
alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34 in
certain tRNAs. The shorter, related protein, previously
called gid or gidA(S), is now called TrmFO (see model
TIGR00137) [Protein synthesis, tRNA and rRNA base
modification].
Length = 617
Score = 29.3 bits (66), Expect = 2.2
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 64 LAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEEENSNGTSILAED 123
L +DE Y +N E+ KS+ ++ NH P + ++G +L
Sbjct: 452 LIDDERYARFLKKKENIEEEIQRLKSTWLTPSKEVKEELKNHLQSPLKREASGEDLLRRP 511
Query: 124 EF-YDAVES 131
E + +
Sbjct: 512 EMNLEKLTK 520
>gnl|CDD|184169 PRK13591, ubiA, prenyltransferase; Provisional.
Length = 307
Score = 28.9 bits (65), Expect = 2.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 3 VVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQI 54
I G+A G Y IP+ FL FFG LF + +Y ++ DTLA I
Sbjct: 165 GFIAGIA-GSYCGSLIPVG-LIFL--FFGVKLFINSCVYDFKDVKGDTLAGI 212
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.8 bits (64), Expect = 3.9
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 104 NHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRL 163
+ + E E IL EDE + L S + + S + + ++
Sbjct: 2994 DEKNEKECELEQNAEILIEDE-------KIGSEGSLESGGEELVCSNLSEGNESSEIEED 3046
Query: 164 WPEVGINY----QPPTVVPGGDLAKV 185
E G + + + D +
Sbjct: 3047 DVESGGEFYADSRDVEDLDSYDKIEA 3072
>gnl|CDD|220662 pfam10265, DUF2217, Uncharacterized conserved protein (DUF2217).
This is a family of conserved proteins of from 500 - 600
residues found from worms to humans. Its function is not
known.
Length = 515
Score = 28.2 bits (63), Expect = 5.3
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 26 LREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGT------SILAEDEFYDAVE 74
L+E F S + ++L++ S T S + D F A E
Sbjct: 190 LQEEFELLFLDSRPVSFRDDLDKSLDGTGYGLSEDTRLRDTLSFTSADSFASAAE 244
>gnl|CDD|203376 pfam06016, Reovirus_L2, Reovirus core-spike protein lambda-2 (L2).
This family consists of several Reovirus core-spike
protein lambda-2 (L2) sequences. The reovirus L2 genome
segment encodes the core spike protein lambda-2, which
mediates enzymatic reactions in 5' capping of the viral
plus-strand transcripts.
Length = 1290
Score = 27.9 bits (62), Expect = 7.1
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 17/113 (15%)
Query: 61 TSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHR----------LWPE 110
SI + + A + S R+ S + +P T + L+
Sbjct: 738 KSIAIYVDSHGARVTTIYGKRTPLSRRRLSRLRYVPLIDPRTLEVQARFTLPPDPVLFEN 797
Query: 111 EENSNGTSILAEDEFYDAVESGSQNSE-----DLGSSRKSSIVSLIPAPSSAT 158
LA Y+ S + + DLG+ ++ I+SLIP T
Sbjct: 798 VSGPVTQLCLAM--MYNFEVSSTVYPDLDHWLDLGTGPEARILSLIPPTLPVT 848
>gnl|CDD|151642 pfam11200, DUF2981, Protein of unknown function (DUF2981). This
eukaryotic family of proteins has no known function.
Length = 319
Score = 27.1 bits (59), Expect = 9.1
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 44 NNLNQDTLAQIEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATA 103
N T + S GT A YD + ++DL S ++ V+ P TA
Sbjct: 172 KNSGDTTGDTNGDGSGGTDGTANYNAYDNPDGKVGAAKDLNSGNTANSVNNTPNSVDNTA 231
Query: 104 NHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSS 146
NS G +D FYD + E G S + S
Sbjct: 232 KPS--DNGSNSAGEKKKEDDSFYDHLPFMPHPGETEGESEEVS 272
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 26.4 bits (59), Expect = 9.5
Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 184 KVQRAVCMLSN-TTAIAEAWARLDH 207
++ ++ T I + RL
Sbjct: 96 ELGGDEIRVTVIATGIGSLFKRLSE 120
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.375
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,450,579
Number of extensions: 1265130
Number of successful extensions: 1201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1198
Number of HSP's successfully gapped: 44
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)