RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6839
         (264 letters)



>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score =  152 bits (386), Expect = 8e-47
 Identities = 85/88 (96%), Positives = 88/88 (100%)

Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
           VGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG
Sbjct: 108 VGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 167

Query: 227 MEEGEFSEAREDLAALEKDYEEVGMDSV 254
           MEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 168 MEEGEFSEAREDMAALEKDYEEVGVDSV 195


>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 184

 Score =  115 bits (290), Expect = 1e-32
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
             +   PP          ++ +   + N+TAI E + R+  +F  M+ ++AF+HWY GEG
Sbjct: 108 TAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 159

Query: 227 MEEGEFSEAREDLAALEKDYEEV 249
           M+E EF+EA  ++  L  +Y++ 
Sbjct: 160 MDEMEFTEAESNMNDLVSEYQQY 182


>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 180

 Score =  115 bits (289), Expect = 2e-32
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 185 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 244
            ++++ +L+N T IA    R+ H FD ++ ++AF +WY+ EGM E + +  R     L +
Sbjct: 114 HRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQ 173

Query: 245 DYEEV 249
            Y+  
Sbjct: 174 SYQVA 178


>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
           transporter AcrB transmembrane domain {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 32.0 bits (72), Expect = 0.049
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 3   VVIFGLAFGLYFT-FFIPLLYFTFLREF 29
            V+ G+        FF+P+ +    R F
Sbjct: 192 GVMGGMVTATVLAIFFVPVFFVVVRRRF 219


>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter
           AcrB transmembrane domain {Escherichia coli [TaxId:
           562]}
          Length = 199

 Score = 29.3 bits (65), Expect = 0.35
 Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)

Query: 3   VVIFGLAFGLYFT-FFIPLLYFTFLR 27
            ++  +A  +       P L  T L+
Sbjct: 174 TIVSAMALSVLVALILTPALCATMLK 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 942,679
Number of extensions: 40709
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 8
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)