RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6840
(439 letters)
>gnl|CDD|215322 PLN02594, PLN02594, phosphatidate cytidylyltransferase.
Length = 342
Score = 312 bits (801), Expect = e-104
Identities = 139/341 (40%), Positives = 200/341 (58%), Gaps = 18/341 (5%)
Query: 111 FREIMTIGLTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFAFIFHALRKPNTAA--LSF 168
RE+ + + LP R + +H+ FT +F+Y + + + + +S
Sbjct: 4 ARELFNLARKAREERQLPGFRLLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSG 63
Query: 169 LVRYNTFISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNG 228
L++Y+ I + LY GF+ F+L+LK Y QF +AWTH+ L+++ TQ F + NI+ G
Sbjct: 64 LIKYHMAICYSLYIAGFVWFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEG 123
Query: 229 LVWFILPVSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYL 288
+ WF+LP S+IVIND AYL GF+FGRTPLIKLSPKKTWEGFIG ++ T++ + LA +
Sbjct: 124 IFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIM 183
Query: 289 TKFDYFVCPVQ--FTDGKYSYVCEVGYIYRQQLYTV-------FN-KEFYTYPILFHTIV 338
KF + CP + T C+ +++ + Y + F KE P+ +H +
Sbjct: 184 GKFQWLTCPRKDLSTGWLE---CDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALS 240
Query: 339 ISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIYTFI 398
+ +FAS+I PFGGFFASGFKRAF IKDF D IPGHGG+ DR DCQ +M+ F Y+Y +FI
Sbjct: 241 LGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFI 300
Query: 399 YRN--TIQGLLDNIYM-LKPEQQLQLYYNLKQDLIARDILQ 436
++ LLD I L E+Q +LY L Q L R +
Sbjct: 301 VPQSVSVGKLLDQILTLLTDEEQKELYVKLGQMLQERGLGL 341
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 179 bits (455), Expect = 2e-53
Identities = 74/325 (22%), Positives = 127/325 (39%), Gaps = 70/325 (21%)
Query: 76 IRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRAIAY 135
R+I I+++ ++ L++LG + ++ + + ++ E++ + + L R +
Sbjct: 2 QRIITHIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGL 61
Query: 136 HYLFTYNYFLYSAHVFAFIFHALRKPNTAAL--SFLVRYNTFISFCLYTLGFITFVLSLK 193
+ +Y + A L L ++ Y+ S L F+
Sbjct: 62 IFYLLGLLLVYGEGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPLFYVGLFLS--- 118
Query: 194 PKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFYF 253
+I N + GL+W +L + ++ +D AY G F
Sbjct: 119 -------------------------LLLITNPFFGLLWALLLILVVWASDIGAYFVGKAF 153
Query: 254 GRT-PLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVG 312
G+ K+SP KTWEGF+GG + VL+ +L + L
Sbjct: 154 GKHKLAPKISPNKTWEGFLGGFVAAVLVGLLFSLLLG----------------------- 190
Query: 313 YIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPG 372
YP H +++ + ASL+G FG SGFKR F IKD +IPG
Sbjct: 191 ----------------PYPSPLHALLLGLLASLVGQFGDLVESGFKRDFGIKDSGKLIPG 234
Query: 373 HGGLIDRFDCQFLMSTFVYVYIYTF 397
HGG++DR D + Y ++Y F
Sbjct: 235 HGGILDRLDSLLFAAPIFYAFLYIF 259
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 123 bits (310), Expect = 3e-32
Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 63/326 (19%)
Query: 73 NALIRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKGYSLPWIRA 132
RVI I++L ++ + +G + + ++ + ++ E L
Sbjct: 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLP 60
Query: 133 IAYHYLFTYNYFLYSAHVFAFIFHALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSL 192
I + L + L F+ + SL
Sbjct: 61 IDLGLVLLDGRRLLGDGKETLLGFLL---------------GFLLGLVLLGVIYYLSDSL 105
Query: 193 KPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFY 252
+ + + F + +Y+GL+ +L + D AY G
Sbjct: 106 FKLFGLLYVGVGLLALL---------PFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRR 156
Query: 253 FGRTPLI-KLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEV 311
FG+ L K+SPKKTWEGFIGGA+ VL+++L+ F L+
Sbjct: 157 FGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLIL------------------ 198
Query: 312 GYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIP 371
++ +++ + L G F S KR IKD +IP
Sbjct: 199 --------------------NIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIP 238
Query: 372 GHGGLIDRFDCQFLMSTFVYVYIYTF 397
GHGG++DRFD ++ ++++ ++
Sbjct: 239 GHGGILDRFDSLLFVAVYLFLLLFIL 264
>gnl|CDD|226955 COG4589, COG4589, Predicted CDP-diglyceride
synthetase/phosphatidate cytidylyltransferase [General
function prediction only].
Length = 303
Score = 77.5 bits (191), Expect = 8e-16
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 86/332 (25%)
Query: 74 ALIRVIFTILMLGFYVTLIWLGHIAIIVCIICVQVICFREIMTIGLTVYKGY-SLPWIR- 131
++ + ++ L ++TL G I+ + RE +T+ T + +L W
Sbjct: 45 VMVIIFSLVISLPRWMTLTLFGLISFLA---------LREFLTLIPTRRPDHLALVWFYW 95
Query: 132 AIAYHYLFT----YNYFLYSAHVFAFIFHALRKPNTAALSFLVRYNTFISFCL--YTLGF 185
+ YL Y F+ V+ F+ I L T GF
Sbjct: 96 VLPLQYLLIGIDWYEMFIIFIPVYGFLI------------------LPILMVLVGDTSGF 137
Query: 186 ITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFILPVSMIVINDCM 245
+ V +++ + ++F +H + L+ + I N G + I + + +ND
Sbjct: 138 LHRVSAIQWGWML---TVFCISHAAYLLTLD-----ITNFQGGALLVIFLLILTELNDVA 189
Query: 246 AYLCGFYFGRTPLI-KLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGK 304
Y+ G FG+ ++ K+SP KT EG IGG + T++ S +L LT +
Sbjct: 190 QYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTPLN------------ 236
Query: 305 YSYVCEVGYIYRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIK 364
++ + L G G S KR +K
Sbjct: 237 ----------------------------TLQALLAGLLIGLSGFCGDLVMSAIKRDVGVK 268
Query: 365 DFSDIIPGHGGLIDRFDC-QFLMSTFVYVYIY 395
D ++PGHGG++DR D F F + Y
Sbjct: 269 DSGKLLPGHGGILDRVDSLIFTAPIFFHFIRY 300
>gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase.
Length = 403
Score = 77.8 bits (191), Expect = 2e-15
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 44/180 (24%)
Query: 217 QCHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIF 276
Q H+ + GLV ++ S ++ D A+L G FGRTPL +SPKKTWEG G +
Sbjct: 261 QAHWTV-----GLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVG 315
Query: 277 TVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFNKEFYTYPILFHT 336
+ ++ILL+ L+ + Q L++ F
Sbjct: 316 CIAITILLSKSLS-------------------------WPQSLFSSIAFGF--------- 341
Query: 337 IVISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDCQFLMSTFVYVYIYT 396
++ F S+ FG S KR +KD +IPGHGG++DR D Y +I T
Sbjct: 342 --LNFFGSV---FGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFIKT 396
>gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional.
Length = 285
Score = 70.4 bits (173), Expect = 1e-13
Identities = 50/161 (31%), Positives = 70/161 (43%), Gaps = 42/161 (26%)
Query: 223 QNIYNGLVWFILPVSMIVIN-DCMAYLCGFYFGRTPLI-KLSPKKTWEGFIGGAIFTVLL 280
+N Y+G W++L V ++V D AY+ G FG+ L K+SP KTWEGFIGG ++
Sbjct: 145 ENHYSG-AWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVI 203
Query: 281 SILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFNKEFYTYPILFHTIVIS 340
S L G ++ + ++ S
Sbjct: 204 SWLF------------------GMWAPLDVA---------------------PVTLLICS 224
Query: 341 IFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFD 381
I A+L G S FKR IKD +IPGHGG++DR D
Sbjct: 225 IVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRID 265
>gnl|CDD|223248 COG0170, SEC59, Dolichol kinase [Lipid metabolism].
Length = 216
Score = 33.9 bits (78), Expect = 0.11
Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 21/165 (12%)
Query: 141 YNYFLYSAHVFAFIFH--ALRKPNTAALSFLVRYNTFISFCLYTLGFITFVLSLKPKCYM 198
H+ + + + A + FL + L ++
Sbjct: 17 LEVRRKLLHISGGLLFLLYILRDKFAIILFL---LILLIILLLEFELFRLLIPGLEGKVT 73
Query: 199 RQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLVWFIL----------PVSMIV--INDCMA 246
S + + I + +L ++V + D +A
Sbjct: 74 LLLSELLSLIERER---EKNGPGLGGIIYFIGGGLLASLLFPIEVAIAGILVLALGDGLA 130
Query: 247 YLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKF 291
+ G +GR I L K+ EG + I + L+ ++L YL F
Sbjct: 131 SIIGKRYGRHKRI-LGNGKSLEGSLAFFIASFLVLLVLYGYLGAF 174
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 32.5 bits (74), Expect = 0.34
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 11 TNAASGDASATPSTEANKPASS---SSSDVDNDDVAAVDLS---KQIKQGTNKVPGFIAQ 64
+ + ASATP+ +A + S D + D AA+ L + F+ +
Sbjct: 113 GDQSGAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK 172
Query: 65 YIQSEAYQNA 74
Y S NA
Sbjct: 173 YPDSTYQPNA 182
>gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel. Clc proteins are
putative halogen ion (Cl-, Br- and I-) transporters
found in eubacteria. They belong to the ClC superfamily
of halogen ion channels, which share a unique
double-barreled architecture and voltage-dependent
gating mechanism. This superfamily lacks any structural
or sequence similarity to other known ion channels and
exhibit unique properties of ion permeation and gating.
The voltage-dependent gating is conferred by the
permeating anion itself, acting as the gating charge.
Length = 388
Score = 31.9 bits (73), Expect = 0.63
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 324 NKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAF 361
+ Y P + + + I+A L GP G A+GF+R
Sbjct: 189 DHPIYDIPPMQLSTPLLIWALLAGPVLGVVAAGFRRLS 226
>gnl|CDD|227389 COG5056, ARE1, Acyl-CoA cholesterol acyltransferase [Lipid
metabolism].
Length = 512
Score = 30.9 bits (70), Expect = 1.5
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 122 YKGYSLPWIRAIAYHYLFTYNYFLYSAHV-------FAFIFHALRKPNTAALSFLVRYNT 174
Y + L Y+ + + L S + F F LR+ FL
Sbjct: 111 YSSHGLSVHGLEIIKYMTSNLFTLASLDLAMALLSFFVFGIQNLRE-----KGFLRWLPL 165
Query: 175 -FISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQ---NIYNGLV 230
+S + L F+T + L + F W + + M YNG +
Sbjct: 166 GTLSLSICELFFLTIFMVL--VVSLLDFY---WVARIFFTLHSCVLLMKFHSYAFYNGYL 220
Query: 231 WFI 233
I
Sbjct: 221 SII 223
>gnl|CDD|235207 PRK04032, PRK04032, hypothetical protein; Provisional.
Length = 159
Score = 29.8 bits (68), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 265 KTWEGFIGGAIFTVLLSILLAF 286
KTW G IGG +F L+ ++
Sbjct: 37 KTWRGLIGGILFGTLVGLIQNL 58
>gnl|CDD|213773 TIGR03082, Gneg_AbrB_dup, membrane protein AbrB duplication. The
model describes a hydrophobic sequence region that is
duplicated to form the AbrB protein of Escherichia coli
(not to be confused with a Bacillus subtilis protein
with the same gene symbol). In some species, notably the
Cyanobacteria and Thermus thermophilus, proteins consist
of a single copy rather than two copies. The member from
Pseudomonas putida, PP_1415, was suggested to be an
ammonia monooxygenase characteristic of heterotrophic
nitrifiers, based on an experimental indication of such
activity in the organism and a glimmer of local sequence
similarity between parts of P. putida protein and an
instance of the AmoA protein from Nitrosomonas europaea
(PMID:9732537); we do not believe the sequence
similarity to be meaningful. The member from E. coli
(b0715, ybgN) appears to be the largely uncharacterized
AbrB (aidB regulator) protein of E. coli cited in
Volkert, et al. (PMID 8002588), although we did not
manage to trace the origin of association of the article
to the sequence.
Length = 156
Score = 29.0 bits (66), Expect = 2.5
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 228 GLVWFILP-VSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAF 286
G + LP + + + L G F R L +L K+ W + + + LS LLA+
Sbjct: 38 GGLEITLPPWLLALAQVVIGILIGSRFTREVLAEL--KRLWPAALLSTVLLLALSALLAW 95
Query: 287 YLTKF 291
L +
Sbjct: 96 LLARL 100
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.0 bits (65), Expect = 5.5
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 263 PKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQ--FTDGKYSYV 308
PKK + F I ++L +LL Y T + + P Q +++
Sbjct: 213 PKKKYTIFKYFGIGLIILLVLLLIYFTYYYFSNQPKQEAIITANTAFL 260
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.145 0.454
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,125,952
Number of extensions: 2359194
Number of successful extensions: 3786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3723
Number of HSP's successfully gapped: 199
Length of query: 439
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 339
Effective length of database: 6,502,202
Effective search space: 2204246478
Effective search space used: 2204246478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (26.8 bits)