RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6840
(439 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 7e-06
Identities = 71/440 (16%), Positives = 125/440 (28%), Gaps = 137/440 (31%)
Query: 26 ANKPASSSSSDVDNDDVAAVDL-SKQIKQGTNKVPGFIAQYIQSEAYQNALIRVIFTILM 84
P + D++ +L K + G+++ ++ +V+ L
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFL--------GYVSSLVEPSK-VGQFDQVLN--LC 87
Query: 85 LGFYVTLIWLG---HIAIIV--------CIICVQVIC---FREIMTIGLTVYKGYSLPWI 130
L + G H A+ ++ + + + K +
Sbjct: 88 LTEFENCYLEGNDIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 131 RAI----AYHY-LF-----TYNYF--------LYSAHVFAFIFHALRKPNTAALSFLVRY 172
RA+ A +F T +YF Y V I + LS L+R
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-----AETLSELIRT 201
Query: 173 NTFISFCLYTLGFITFVLSLKPKCYMRQFSLFAWTH---------------VSL-LIIVT 216
++T G ++ W +S LI V
Sbjct: 202 TLDAEK-VFTQGL----------------NILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 217 Q-CHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLI----KLSPKKTWEGFI 271
Q H+++ G P + +YL G G + + ++ +WE F
Sbjct: 245 QLAHYVVTAKLLGFT----PGEL------RSYLKGA-TGHSQGLVTAVAIAETDSWESFF 293
Query: 272 GGA--IFTVLLSILLAFYLTKFDYFVCPVQFTD------GKYSYVCEVGYIYRQQLYTV- 322
TVL I + Y + + P D G S + + + ++Q+
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 323 --FNKEFYTYPILFHTIVISIFASLI-GP--F--GGFFAS--GFKRAF-NIKDFSDI--- 369
N P + I SL+ G G S G K S +
Sbjct: 354 NKTNSHL---PAGKQ---VEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 370 -IPGHGGLIDR---FDCQFL 385
IP +R F +FL
Sbjct: 406 RIPFS----ERKLKFSNRFL 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.004
Identities = 75/452 (16%), Positives = 140/452 (30%), Gaps = 136/452 (30%)
Query: 35 SDVDNDDVAAVDLSKQIKQGTNKVPGFIAQYIQSEAYQNALI--------RVI--F---- 80
+D + + D S IK + + + + ++S+ Y+N L+ + F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 81 TILML-----------GFYVTLIWLGHI--------AIIVCIICVQVICF---REIMTIG 118
IL+ T I L H + + + RE++T
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 119 -LTVYKGYSLPWIRAIAYHYLFTYNYFLYSAHVFAFIFHALRKPNTAALSFLVRYNTFIS 177
+ S+ I L T++ + + N L T I
Sbjct: 327 PRRL----SI--IAESIRDGLATWDNW--------------KHVNCDKL------TTIIE 360
Query: 178 FCLYTLGFITFVLSLKP----KCYMRQFSLF-AWTHVSLLIIVTQCHFMIQNIYNGLVWF 232
L L+P K + + S+F H+ +++ L+WF
Sbjct: 361 SSL---------NVLEPAEYRKMF-DRLSVFPPSAHIPTILLS-------------LIWF 397
Query: 233 ILP--VSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIGGAIFTVLLSI-------- 282
+ M+V+N Y L++ PK E I I ++ L +
Sbjct: 398 DVIKSDVMVVVNKLHKYS---------LVEKQPK---ESTIS--IPSIYLELKVKLENEY 443
Query: 283 -----LLAFY--LTKFDYFVCPVQFTDGKYSYVCEVGY----IYRQQLYTVFNKEFYTYP 331
++ Y FD + D Y Y +G+ I + T+F F +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFY-SHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 332 ILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDF-SDIIPGHGGLIDRFDCQFLM--ST 388
L I S G + ++ K + D P + L++ FL
Sbjct: 502 FLEQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEE 557
Query: 389 FVYVYIYTFIYRNTIQGLLDNIYMLKPEQQLQ 420
+ YT + R + + I+ + +Q+Q
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIF-EEAHKQVQ 588
Score = 31.7 bits (71), Expect = 0.55
Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 65/201 (32%)
Query: 258 LIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVC------EV 311
+ ++ + F+ + + +Y +F
Sbjct: 70 TLLSKQEEMVQKFVEEVL--------------RINY-----KFLMSPIKTEQRQPSMMTR 110
Query: 312 GYI-YRQQLYTVFNKEFYTYPILFHTIVISIFASLIGPFGGFFASGFKRAFNIKDFSDII 370
YI R +LY N+ F Y + + + +L + A N+ +I
Sbjct: 111 MYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQAL---------LELRPAKNV-----LI 155
Query: 371 PGHGG-----LI------DRFDCQFLMSTFVYVYIYTFIYRNTIQGLLDNIYMLKPEQQL 419
G G + + C+ F ++ N+ + +L E
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WL-NLKNCNSPETVL--------EMLQ 203
Query: 420 QLYYNLKQDLIAR-DILQNTE 439
+L Y + + +R D N +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIK 224
Score = 31.4 bits (70), Expect = 0.73
Identities = 71/463 (15%), Positives = 128/463 (27%), Gaps = 131/463 (28%)
Query: 6 HRHIDTNAASGDASATPSTEANKPASSSSSDVDNDDVAAVDLSKQIKQGTNKVPGFIAQY 65
H H+D + A + D DV D+ K I + + I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVD--NFDCKDVQ--DMPKSIL--SKEEIDHI--- 54
Query: 66 IQSEAYQNALIRVIFTILMLG------FYVTLI-----WLGHIAIIVCIICVQVICFREI 114
I S+ + +R+ +T+L F ++ +L
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-------------------- 94
Query: 115 MTIGLTVYKGYSLPWIRAIAYH-YLFTYNYFLYSAHVFAF-IFHALRKPNTAALSFLVRY 172
M+ T + S+ I L+ N +V + LR+ AL L R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ----ALLEL-RP 149
Query: 173 NTFISFCLY-TLGF------ITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNI 225
+ + LG + LS K +C M F +F W ++ M+Q +
Sbjct: 150 AKNV--LIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIF-WLNLKNCNSPETVLEMLQKL 205
Query: 226 YNGLV--WFILPVSM----IVINDCMAYLCGFYFGR---TPLIKL---SPKKTWEGFIGG 273
+ W + I+ A L + L+ L K W F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 274 AIFTVLL---SILLAFYLTKFDYFVCPVQ-----FTDGKYSYVCEVGYIYRQQLYTVFNK 325
+LL + +L+ + T + + L +
Sbjct: 266 C--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----------KSLLLKYLDC 313
Query: 326 EFYTYPILFHTI---VISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLIDRFDC 382
P T +SI A I +D + +D
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESI-----------------RDG----------LATWD- 345
Query: 383 QFLMSTFVYVYIYTFIYRNTIQGLLDNIYMLKPEQQLQLYYNL 425
+ +V I+ L+ L+P + +++ L
Sbjct: 346 -----NWKHVNCDKL--TTIIESSLNV---LEPAEYRKMFDRL 378
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D*
1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D*
2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D*
3ag1_D* 3ag2_D* ...
Length = 147
Score = 32.6 bits (74), Expect = 0.12
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 252 YFGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTD 302
F + W+ +G A+F + + LL + + Y P F +
Sbjct: 63 KFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEE 113
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 32 carbohydrate-binding module; HET:
MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Length = 161
Score = 32.2 bits (73), Expect = 0.14
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 1 MSELKHRHIDTNAASGDASATPSTEA-----NKPASSSSSDVDNDDVAAVD 46
M H H ++ S S NK S S+S N D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASANYVNIAENKNVSGSNSQSGNPLSNITD 51
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 31.9 bits (72), Expect = 0.21
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 253 FGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTD 302
F + W+ +G A+F + + LL + + Y P F +
Sbjct: 86 FKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEE 135
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: MSE; 1.55A {Clostridium
perfringens}
Length = 149
Score = 27.5 bits (61), Expect = 5.0
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 1 MSELKHRHIDTNAASGDASATPSTE--ANKPASSSSSDVDNDDVAAVD 46
M H H ++ S S + +++ D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASENLAMKDETKVEVTSNNSEANNLRD 48
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 28.4 bits (63), Expect = 5.5
Identities = 8/123 (6%), Positives = 29/123 (23%), Gaps = 6/123 (4%)
Query: 124 GYSLPWIRAIAYHYLFTYNYFLYSAHVFAFIFHALRKPNTAALSFL--VRYNTFISFCLY 181
P R ++ L ++ + + + + VR++ +
Sbjct: 31 ENLFPAARMVS-DVLGIVASAVWILFILMYAYKLRYYFEEVRAEYHSPVRFSFIALIPIT 89
Query: 182 TLGFITFVLSLKPKCYMRQFSLFAWTHVSLLIIVTQCHFMIQNIYNGLV---WFILPVSM 238
T+ + P + + + + +++ V+
Sbjct: 90 TMLVGDILYRWNPLIAEVLIWIGTIGQLLFSTLRVSELWQGGVFEQKSTHPSFYLPAVAA 149
Query: 239 IVI 241
Sbjct: 150 NFT 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.145 0.454
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,905,402
Number of extensions: 419998
Number of successful extensions: 872
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 17
Length of query: 439
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 343
Effective length of database: 4,021,377
Effective search space: 1379332311
Effective search space used: 1379332311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.7 bits)