RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6840
         (439 letters)



>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 144

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 253 FGRTPLIKLSPKKTWEGFIGGAIFTVLLSILLAFYLTKFDYFVCPVQFTD 302
           F  +          W+  +G A+F +  + LL  +   + Y   P  F +
Sbjct: 61  FKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEE 110


>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 298

 Score = 28.0 bits (61), Expect = 2.0
 Identities = 17/168 (10%), Positives = 41/168 (24%), Gaps = 8/168 (4%)

Query: 213 IIVTQCHFMIQNIYNGLVWFILPVSMIVINDCMAYLCGFYFGRTPLIKLSPKKTWEGFIG 272
            ++T  H+         +   LP   ++ ++         +     +++  +   +    
Sbjct: 65  WLITHKHY-DHCGLLPYLCPRLPNVQVLASERTCQ----AWKSESAVRVVERLNRQLLRA 119

Query: 273 GAIFTVLLSILLAFYLTKFDYFVCPVQFTDGKYSYVCEVGYIYRQQLYTVFNKEFYTYPI 332
                   +          D     +                     Y V  +  +    
Sbjct: 120 EQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDA 179

Query: 333 LFHTI--VISIFASLIGPFGGFFASGFKRAFNIKDFSDIIPGHGGLID 378
           L             +      +  S  +R   +     +IPGHGGL+ 
Sbjct: 180 LGEFDEAEGVWRPLVFDDMEAYLES-LERLQRLPTLLQLIPGHGGLLR 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,716,965
Number of extensions: 83563
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 13
Length of query: 439
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,199,356
Effective search space: 420973956
Effective search space used: 420973956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.1 bits)