BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6841
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1
Length = 311
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 54 HHTITCLPVLPKEMDQDSDDQKDPKW 79
+ I C VLP+++ D K+PKW
Sbjct: 64 QNCIFCWRVLPRDIGIDISQIKEPKW 89
>pdb|4DUF|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|C Chain C, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|D Chain D, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
Length = 471
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|4DUC|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
pdb|4DUC|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
Length = 472
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTI 367
>pdb|4DUB|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
pdb|4DUB|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
Length = 472
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTI 367
>pdb|4DUD|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUD|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUE|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
pdb|4DUE|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
Length = 471
Score = 25.8 bits (55), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1P0V|A Chain A, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0V|B Chain B, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|4DUA|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
pdb|4DUA|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
Length = 471
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
Length = 455
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3KX5|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX5|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3DGI|A Chain A, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
pdb|3DGI|B Chain B, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
Length = 461
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1YQO|A Chain A, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1YQO|B Chain B, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1YQP|A Chain A, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
pdb|1YQP|B Chain B, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3EKB|A Chain A, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
pdb|3EKB|B Chain B, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1P0W|A Chain A, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0W|B Chain B, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2BMH|A Chain A, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|2BMH|B Chain B, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2J1M|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J1M|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
Length = 455
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTI 367
>pdb|3EKD|A Chain A, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKD|B Chain B, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2IJ4|A Chain A, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
pdb|2IJ4|B Chain B, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1P0X|A Chain A, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0X|B Chain B, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1ZO9|A Chain A, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
pdb|1ZO9|B Chain B, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
Length = 473
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 344 LGGEYPLEKGDELMVLIPQLHRDKTI 369
>pdb|3EKF|A Chain A, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKF|B Chain B, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3BEN|A Chain A, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
pdb|3BEN|B Chain B, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTI 367
>pdb|2NNB|A Chain A, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
pdb|2NNB|B Chain B, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
Length = 471
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1ZO4|A Chain A, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
pdb|1ZO4|B Chain B, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
Length = 473
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 344 LGGEYPLEKGDELMVLIPQLHRDKTI 369
>pdb|1ZOA|A Chain A, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
pdb|1ZOA|B Chain B, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
Length = 473
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 344 LGGEYPLEKGDELMVLIPQLHRDKTI 369
>pdb|3KX4|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX4|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3KX3|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX3|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2IJ2|A Chain A, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
pdb|2IJ2|B Chain B, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2IJ3|A Chain A, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
pdb|2IJ3|B Chain B, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|1SMI|A Chain A, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMI|B Chain B, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMJ|A Chain A, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|B Chain B, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|C Chain C, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|D Chain D, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
Length = 471
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|2HPD|A Chain A, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|2HPD|B Chain B, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3M4V|A Chain A, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
pdb|3M4V|B Chain B, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTI 367
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|4DTW|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTW|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTY|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTY|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTZ|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
pdb|4DTZ|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
Length = 469
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 341 LGGEYPLEKGDELMVLIPQLHRDKTI 366
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTI 367
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTV 367
>pdb|4DU2|B Chain B, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
pdb|4DU2|A Chain A, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
Length = 470
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSM 26
+G ++P G EL+V P+ HR ++
Sbjct: 342 LGGEYPLEKGDELMVLIPQLHRDKTV 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,935,161
Number of Sequences: 62578
Number of extensions: 151599
Number of successful extensions: 308
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 47
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)