BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6841
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila melanogaster GN=Su(z)12 PE=1
SV=1
Length = 900
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Query: 11 SELLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQD 70
+ L+V PRR K + EFL D+ + R ++GHNRLYHHT TCLPV PKE+D D
Sbjct: 490 TSLMVCRPRRQ-KTCLDEFLE--LDEDEISNQRSYITGHNRLYHHTETCLPVHPKELDID 546
Query: 71 SDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113
S+ + DP WL+ KT MIDEF+DVNEGEKELMKLWNLHVM++G
Sbjct: 547 SEGESDPLWLRQKTIQMIDEFSDVNEGEKELMKLWNLHVMRHG 589
>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1
Length = 700
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 13 LLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSD 72
+LV P+R K SMSEFL ++D + + R SGHNRLY H+ TCLP+ P+EMD DS+
Sbjct: 485 ILVCRPKR-TKASMSEFLE--SEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMDVDSE 541
Query: 73 DQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113
D+KDP+WL+ KT I+EF+DVNEGEKE+MK+WNLHVMK+G
Sbjct: 542 DEKDPEWLREKTITQIEEFSDVNEGEKEVMKMWNLHVMKHG 582
>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2
Length = 741
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 13 LLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSD 72
+LV P+R K SMSEFL ++D + + R SGHNRLY H+ TCLP+ P+EM+ DS+
Sbjct: 530 ILVCRPKR-TKASMSEFLE--SEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSE 586
Query: 73 DQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113
D+KDP+WL+ KT I+EF+DVNEGEKE+MKLWNLHVMK+G
Sbjct: 587 DEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHG 627
>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3
Length = 739
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 13 LLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSD 72
+LV P+R K SMSEFL ++D + + R SGHNRLY H+ TCLP+ P+EM+ DS+
Sbjct: 528 ILVCRPKR-TKASMSEFLE--SEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSE 584
Query: 73 DQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113
D+KDP+WL+ KT I+EF+DVNEGEKE+MKLWNLHVMK+G
Sbjct: 585 DEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHG 625
>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN=suz12b PE=2 SV=1
Length = 682
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 13 LLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSD 72
+LV P+R K S+SEFL ++D + + R VSGHNRLY H+ +C+P+ P+EM+ DS+
Sbjct: 488 ILVCRPKR-TKPSLSEFLE--SEDGEPEQQRTYVSGHNRLYFHSDSCMPLRPQEMEVDSE 544
Query: 73 DQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113
D++DP+WLQ KT I+EFTDVNEGEKE+MKLWNLHVMK G
Sbjct: 545 DERDPEWLQEKTTTQIEEFTDVNEGEKEVMKLWNLHVMKNG 585
>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1
Length = 657
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 11 SELLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQD 70
+++LV P+R K S+SEFL +D + + R +SGHNRLY H+ +C P+ P+EM+ D
Sbjct: 491 TQILVCRPKRS-KPSLSEFLE--PEDGEQEQQRTYISGHNRLYFHSDSCTPLRPQEMEVD 547
Query: 71 SDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113
S+D++DP WL+ KT M I+EFTDVNEGEKE+MKLWNL VMK+G
Sbjct: 548 SEDERDPDWLREKTAMQIEEFTDVNEGEKEIMKLWNLLVMKHG 590
>sp|Q8W5B1|VRN2_ARATH Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana
GN=VRN2 PE=1 SV=2
Length = 440
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 85 KMMIDEFTDVNEGEKELMKLWNLHVMK 111
+ M+D+F DVN+ EK+ M LWN V K
Sbjct: 303 RQMLDDFVDVNKDEKQFMHLWNSFVRK 329
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3
Length = 755
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 51 RLYHHTITCLPVLPKEM--DQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLH 108
R ++H+ T P+ +++ ++DS+++ D L ++ ++ V++ EK M LWN+
Sbjct: 606 RQFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIF 665
Query: 109 VMK 111
V K
Sbjct: 666 VRK 668
>sp|Q8L6Y4|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana
GN=EMF2 PE=1 SV=2
Length = 631
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 85 KMMIDEFTDVNEGEKELMKLWNLHVMK 111
+ M+D+F DV + EK++M +WN V K
Sbjct: 541 RRMLDDFVDVTKDEKQMMHMWNSFVRK 567
>sp|Q2FU48|IF2P_METHJ Probable translation initiation factor IF-2 OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=infB PE=3 SV=1
Length = 604
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 1 MGQQFPTSDGSELLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRLY 53
+G+QF D ELLV P RH K +E L+ + +DA + V++ + RL+
Sbjct: 550 VGRQFDVED--ELLVGIPERHVKVLETEMLSHLNEDA-----KEVLNEYTRLF 595
>sp|Q49ZN0|FDHL_STAS1 Putative formate dehydrogenase SSP0601 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP0601 PE=3 SV=1
Length = 984
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 44 PVVS-----GHNRLYHHTITCLPVLPKEMDQDSDDQKDPK------WLQTKTKMMIDE 90
PV++ GH +LY++T+ + EM + +D+ PK WL TK +IDE
Sbjct: 432 PVIASRIKRGH-KLYNNTLNVFDIRKHEMAERADNFYQPKPGTDLVWLSAVTKYIIDE 488
>sp|Q6PE55|PGFRL_MOUSE Platelet-derived growth factor receptor-like protein OS=Mus
musculus GN=Pdgfrl PE=2 SV=1
Length = 375
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 28 EFLNDMADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDD 73
E L D+A RP G NR+ P +PK D+DS D
Sbjct: 14 EALEDVAGQHSPKNKRPKEQGENRIKPTNKKAKPKIPKVKDRDSTD 59
>sp|Q9HE87|DOM3Z_NEUCR Protein rai-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=rai-1 PE=3 SV=3
Length = 383
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 56 TITCLPVLPKEMDQDSDD----QKDP-KWLQTKTKMMIDEFTDVNEGEKELMKLW 105
TI C+ E+D DD Q DP W++ KT +I N E++LMK W
Sbjct: 209 TILCIG---GEVDAIWDDKPRTQGDPINWVELKTSAVIQNERQANNFERKLMKFW 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,827,249
Number of Sequences: 539616
Number of extensions: 1895451
Number of successful extensions: 4218
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4206
Number of HSP's gapped (non-prelim): 28
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)