Query psy6841
Match_columns 113
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:48:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fly_A Proadrenomedullin N-20 65.5 3.2 0.00011 22.9 1.6 14 100-113 8-21 (26)
2 2l9b_B MRNA 3'-END-processing 24.6 20 0.00067 22.6 0.4 11 47-57 17-27 (53)
3 3hpw_C Protein CCDA; alpha+bet 23.9 43 0.0015 19.0 1.8 15 99-113 13-27 (36)
4 1j03_A Putative steroid bindin 19.3 78 0.0027 21.2 2.7 23 89-111 70-92 (102)
5 4gl3_A Putative glucoamylase; 18.8 1E+02 0.0035 25.6 3.8 58 46-105 97-155 (424)
6 3ogk_Q JAZ1 incomplete degron 18.1 30 0.001 18.2 0.2 9 23-31 2-10 (22)
7 3n1s_A HIT-like protein HINT; 14.6 77 0.0026 20.8 1.7 22 5-29 33-54 (119)
8 1b0n_B Protein (SINI protein); 13.4 2.4E+02 0.0081 17.4 3.6 33 71-106 7-40 (57)
9 2ph7_A Uncharacterized protein 13.1 65 0.0022 25.7 1.1 19 46-64 72-90 (246)
10 1c20_A DEAD ringer protein; DN 12.9 2.2E+02 0.0074 19.3 3.7 32 81-113 7-38 (128)
No 1
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=65.54 E-value=3.2 Score=22.91 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhcC
Q psy6841 100 ELMKLWNLHVMKYG 113 (113)
Q Consensus 100 e~M~lWN~FV~kq~ 113 (113)
+|.+.||++++..|
T Consensus 8 efrKKwn~w~lsR~ 21 (26)
T 2fly_A 8 EFRKKWNKWALSRX 21 (26)
T ss_pred HHHHHHHHHHHhcc
Confidence 68899999998754
No 2
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=24.56 E-value=20 Score=22.62 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=9.0
Q ss_pred cCCCcceeecc
Q psy6841 47 SGHNRLYHHTI 57 (113)
Q Consensus 47 ~~~~R~yfHs~ 57 (113)
-++|||||-+.
T Consensus 17 vLPKRQYFK~~ 27 (53)
T 2l9b_B 17 VIPKRQYFNTN 27 (53)
T ss_dssp HSBCGGGGCSS
T ss_pred HcchHhhhccc
Confidence 48999999764
No 3
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=23.93 E-value=43 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhcC
Q psy6841 99 KELMKLWNLHVMKYG 113 (113)
Q Consensus 99 Ke~M~lWN~FV~kq~ 113 (113)
.+.|..+|.||-++|
T Consensus 13 ~~ai~~~N~~ve~~G 27 (36)
T 3hpw_C 13 QEGMAEVARFIEMNG 27 (36)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC
Confidence 678899999999887
No 4
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=19.27 E-value=78 Score=21.17 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=20.2
Q ss_pred hccCCCChhhHHHHHHHHHHhhh
Q psy6841 89 DEFTDVNEGEKELMKLWNLHVMK 111 (113)
Q Consensus 89 ddF~DVn~~EKe~M~lWN~FV~k 111 (113)
++.+|+++.|++-+..|-.|..+
T Consensus 70 ~dl~~L~~~e~~~l~~W~~~f~~ 92 (102)
T 1j03_A 70 PSLEGLTEKEINTLNDWETKFEA 92 (102)
T ss_dssp SSCSSCCHHHHHHHHHHHHHHHT
T ss_pred CcccCCCHHHHHHHHHHHHHHhc
Confidence 67889999999999999988754
No 5
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=18.77 E-value=1e+02 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=44.9
Q ss_pred ccCCCcceeeccCccccCCCCCCCCCC-CCCCHHHHHHHHHHHhhccCCCChhhHHHHHHH
Q psy6841 46 VSGHNRLYHHTITCLPVLPKEMDQDSD-DQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLW 105 (113)
Q Consensus 46 ~~~~~R~yfHs~T~~Pl~p~E~D~DSE-dE~D~~WL~~k~r~~LddF~DVn~~EKe~M~lW 105 (113)
-.||==-||++.|.+|+.+.+.| ++ +-+|-.||..--...=+-|.+-++.|+++..+=
T Consensus 97 ~~G~fyhwyd~~Tg~~l~~~~~d--~~vStVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a 155 (424)
T 4gl3_A 97 YHGMWAHWMNGKTGKTIPFSRKD--DGADIVESAFMFEGLLAAHQYFTKDNPTENRIRGII 155 (424)
T ss_dssp BTTBCCSEEETTTCCEECSBTTB--CSEEHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHH
T ss_pred cCCccccceeCCCCCCCCCcCCC--CcccHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Confidence 35777778889999999987752 22 337888988877777788999999999987643
No 6
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=18.09 E-value=30 Score=18.19 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=7.9
Q ss_pred CCChHHHHh
Q psy6841 23 KHSMSEFLN 31 (113)
Q Consensus 23 ~~slsefle 31 (113)
+.||.-|||
T Consensus 2 k~SLqRFle 10 (22)
T 3ogk_Q 2 RASLHRFLE 10 (26)
T ss_pred chhHHHHHH
Confidence 389999999
No 7
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=14.56 E-value=77 Score=20.84 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=14.4
Q ss_pred CCCCCCccceEeccCCCCCCChHHH
Q psy6841 5 FPTSDGSELLVYYPRRHRKHSMSEF 29 (113)
Q Consensus 5 ~~~~~~t~~lv~rp~r~~~~slsef 29 (113)
+|.+|+ |+||. |||+- .++.|.
T Consensus 33 ~P~~pg-H~LVi-Pk~Hv-~~l~dL 54 (119)
T 3n1s_A 33 SPQAPT-HILII-PNILI-PTVNDV 54 (119)
T ss_dssp SCSSSE-EEEEE-ESSCC-CSGGGC
T ss_pred CCCCCC-eEEEE-ehhHh-CCHhHc
Confidence 455553 67776 89986 777553
No 8
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=13.44 E-value=2.4e+02 Score=17.35 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCChhh-HHHHHHHH
Q psy6841 71 SDDQKDPKWLQTKTKMMIDEFTDVNEGE-KELMKLWN 106 (113)
Q Consensus 71 SEdE~D~~WL~~k~r~~LddF~DVn~~E-Ke~M~lWN 106 (113)
+-.+.|.+|+..-.+..=- .++.+| ++|+.+++
T Consensus 7 ~~~~~d~ewl~LI~~Ak~l---GlsleEIrefL~l~~ 40 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAKEA---NISPEEIRKYLLLNK 40 (57)
T ss_dssp --CCCCHHHHHHHHHHHHT---TCCHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHhc
Confidence 4568899997655444433 446677 88887764
No 9
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=13.09 E-value=65 Score=25.68 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.8
Q ss_pred ccCCCcceeeccCccccCC
Q psy6841 46 VSGHNRLYHHTITCLPVLP 64 (113)
Q Consensus 46 ~~~~~R~yfHs~T~~Pl~p 64 (113)
+..+.|.|||.+||.|.++
T Consensus 72 ~~i~g~iFy~~h~~Ky~~~ 90 (246)
T 2ph7_A 72 VKIGDVLFYHPHVIKPEKE 90 (246)
T ss_dssp EEETTEEEEECSSCCCCHH
T ss_pred EEECCEEEEeccCCCCChH
Confidence 4568999999999999653
No 10
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=12.93 E-value=2.2e+02 Score=19.28 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHhhhcC
Q psy6841 81 QTKTKMMIDEFTDVNEGEKELMKLWNLHVMKYG 113 (113)
Q Consensus 81 ~~k~r~~LddF~DVn~~EKe~M~lWN~FV~kq~ 113 (113)
+.|.++.|.+..+. +.++.||..-..|..++|
T Consensus 7 ~fk~iqrl~el~~~-~~~~~Fl~~L~~F~~~rG 38 (128)
T 1c20_A 7 QFKQVRQLYEINDD-PKRKEFLDDLFSFMQKRG 38 (128)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHccCCc-hHHHHHHHHHHHHHHHcC
Confidence 45677888888884 788999999999998876
Done!