Query psy6841
Match_columns 113
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 19:48:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6841.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6841hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1knya1 a.24.16.1 (A:126-253) 24.8 4.6 0.00033 27.8 -1.1 16 46-61 52-67 (128)
2 d2g40a1 c.124.1.7 (A:38-212) H 20.5 11 0.0008 25.5 0.2 43 9-52 110-152 (175)
3 d2gc4d1 a.3.1.1 (D:1-147) Cyto 13.9 32 0.0023 22.1 1.3 22 52-73 3-24 (147)
4 d1emsa1 d.13.1.1 (A:281-440) N 13.7 44 0.0032 21.9 2.0 21 5-28 45-65 (160)
5 d1t0ga_ d.120.1.2 (A:) Putativ 11.6 75 0.0054 20.2 2.6 23 89-111 77-99 (109)
6 d2oika1 d.13.1.1 (A:6-144) His 9.7 62 0.0045 20.1 1.6 22 5-29 30-51 (139)
7 d1cdza_ c.15.1.1 (A:) DNA-repa 9.5 57 0.0041 18.4 1.3 16 5-20 39-54 (96)
8 d1z84a2 d.13.1.2 (A:196-351) G 9.2 62 0.0045 20.6 1.5 20 5-27 46-65 (156)
9 d1in1a_ c.15.1.2 (A:) DNA liga 7.4 92 0.0067 18.5 1.7 18 5-22 49-66 (88)
10 d2gbsa1 b.122.1.8 (A:2-137) Hy 7.4 59 0.0043 21.5 0.7 14 47-61 44-57 (136)
No 1
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=24.83 E-value=4.6 Score=27.79 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=12.5
Q ss_pred ccCCCcceeeccCccc
Q psy6841 46 VSGHNRLYHHTITCLP 61 (113)
Q Consensus 46 ~~~~~R~yfHs~T~~P 61 (113)
+-+|||.||||....+
T Consensus 52 igLhNr~~ftT~A~vl 67 (128)
T d1knya1 52 IGLHHRICYTTSASVL 67 (128)
T ss_dssp HHHHHTCCCSSSSSHH
T ss_pred HHHhhhhhhcccccCc
Confidence 3489999999987543
No 2
>d2g40a1 c.124.1.7 (A:38-212) Hypothetical protein DR1909 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.54 E-value=11 Score=25.53 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=27.7
Q ss_pred CCccceEeccCCCCCCChHHHHhhcccCCCcCCCCCcccCCCcc
Q psy6841 9 DGSELLVYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSGHNRL 52 (113)
Q Consensus 9 ~~t~~lv~rp~r~~~~slsefle~~~~~~~~~~~r~~~~~~~R~ 52 (113)
|-+||.|.+..+-- ++|.|-++.+......-..=++++|+.|+
T Consensus 110 P~~hI~vv~~~~iv-~~~~~a~~~l~~~~~~~~~~~~IsGPSrT 152 (175)
T d2g40a1 110 PDFHICVVREDQIV-QTVREGVEAVAASVREGRPLTWLSGGSAT 152 (175)
T ss_dssp SSEEEEEEEGGGEE-SSHHHHHHHHHHHHHTTCCCEEEECCC--
T ss_pred CCEEEEEEEHHHcc-CCHHHHHHHHHhhcCCCCcEEEEECCCcc
Confidence 67888888887777 99999887554332221122478888774
No 3
>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}
Probab=13.94 E-value=32 Score=22.11 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.1
Q ss_pred ceeeccCccccCCCCCCCCCCC
Q psy6841 52 LYHHTITCLPVLPKEMDQDSDD 73 (113)
Q Consensus 52 ~yfHs~T~~Pl~p~E~D~DSEd 73 (113)
+|||+-+..||..++.-.+.++
T Consensus 3 ~~~~~~~~~pl~~~~~~~~~~~ 24 (147)
T d2gc4d1 3 QFFNIIDGSPLNFDDAMEEGRD 24 (147)
T ss_dssp CCBCTTTCCBCCGGGSCSTTSS
T ss_pred eeeecCCCCcCCcccccccccc
Confidence 7999999999999987555544
No 4
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=13.69 E-value=44 Score=21.88 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=15.0
Q ss_pred CCCCCCccceEeccCCCCCCChHH
Q psy6841 5 FPTSDGSELLVYYPRRHRKHSMSE 28 (113)
Q Consensus 5 ~~~~~~t~~lv~rp~r~~~~slse 28 (113)
+|-+| -|+||+ |||+- .++.|
T Consensus 45 ~P~~p-gH~LVI-PK~H~-~~l~d 65 (160)
T d1emsa1 45 KPVTD-GHVLVS-PKRVV-PRLTD 65 (160)
T ss_dssp SCSST-TCEEEE-ESSCC-SCGGG
T ss_pred CCCCC-CeEEEE-Eeccc-chhhh
Confidence 45555 478887 99987 77654
No 5
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.56 E-value=75 Score=20.20 Aligned_cols=23 Identities=13% Similarity=0.279 Sum_probs=18.9
Q ss_pred hccCCCChhhHHHHHHHHHHhhh
Q psy6841 89 DEFTDVNEGEKELMKLWNLHVMK 111 (113)
Q Consensus 89 ddF~DVn~~EKe~M~lWN~FV~k 111 (113)
++-+|+++.|...|..|-.|..+
T Consensus 77 ~d~~~L~~~e~~~L~~W~~~f~~ 99 (109)
T d1t0ga_ 77 PSLEGLTEKEINTLNDWETKFEA 99 (109)
T ss_dssp SCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CcccCCCHHHHHHHHHHHHHHhc
Confidence 34568899999999999998754
No 6
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=9.65 E-value=62 Score=20.11 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=14.6
Q ss_pred CCCCCCccceEeccCCCCCCChHHH
Q psy6841 5 FPTSDGSELLVYYPRRHRKHSMSEF 29 (113)
Q Consensus 5 ~~~~~~t~~lv~rp~r~~~~slsef 29 (113)
+|..|. |+||. |||+- .++.|+
T Consensus 30 ~p~~pG-h~Lvi-pk~H~-~~l~dL 51 (139)
T d2oika1 30 NQDYPG-FCRVI-LNRHV-KEMSDL 51 (139)
T ss_dssp CTTCTT-CEEEE-ESSCC-SCGGGS
T ss_pred CCCCCc-EEEEe-ccccc-chhhhc
Confidence 566663 66666 99987 776543
No 7
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.46 E-value=57 Score=18.41 Aligned_cols=16 Identities=0% Similarity=-0.087 Sum_probs=12.3
Q ss_pred CCCCCCccceEeccCC
Q psy6841 5 FPTSDGSELLVYYPRR 20 (113)
Q Consensus 5 ~~~~~~t~~lv~rp~r 20 (113)
.+++-+||+++.++..
T Consensus 39 ~~~~~~THvI~~~~~~ 54 (96)
T d1cdza_ 39 YMSDRVQFVITAQEWD 54 (96)
T ss_dssp SCSTTCSEEECSSCCC
T ss_pred cCCCCceEEEEccCCc
Confidence 4678899999877654
No 8
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.21 E-value=62 Score=20.58 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=12.8
Q ss_pred CCCCCCccceEeccCCCCCCChH
Q psy6841 5 FPTSDGSELLVYYPRRHRKHSMS 27 (113)
Q Consensus 5 ~~~~~~t~~lv~rp~r~~~~sls 27 (113)
+|.+|. |+||+ ||++- .++.
T Consensus 46 ~p~~p~-h~lIi-Pk~h~-~~~~ 65 (156)
T d1z84a2 46 AATYPF-EIWII-PKDHS-SHFH 65 (156)
T ss_dssp TCSSTT-CEEEE-ESSCC-SCGG
T ss_pred CCCcCc-EEEEE-ecchh-hhhc
Confidence 456665 67776 77777 6543
No 9
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=92 Score=18.54 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=13.1
Q ss_pred CCCCCCccceEeccCCCC
Q psy6841 5 FPTSDGSELLVYYPRRHR 22 (113)
Q Consensus 5 ~~~~~~t~~lv~rp~r~~ 22 (113)
+..+.+||+++.+++..+
T Consensus 49 ~~~~~vTHvI~~~~~~~~ 66 (88)
T d1in1a_ 49 FDMTSATHVLGSRDKNPA 66 (88)
T ss_dssp TCCTTCCCEESCCTTCTT
T ss_pred ccCCCceEEEEcCCCCCC
Confidence 345679999998776554
No 10
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=7.37 E-value=59 Score=21.48 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.3
Q ss_pred cCCCcceeeccCccc
Q psy6841 47 SGHNRLYHHTITCLP 61 (113)
Q Consensus 47 ~~~~R~yfHs~T~~P 61 (113)
.|-.=.||||- |.|
T Consensus 44 ~GD~~~fYHS~-~~~ 57 (136)
T d2gbsa1 44 RGDRAFYYHSN-EGK 57 (136)
T ss_dssp TTCEEEEEETT-TTC
T ss_pred cCCEEEEEecC-CCC
Confidence 37777899997 544
Done!