RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6841
         (113 letters)



>gnl|CDD|204299 pfam09733, VEFS-Box, VEFS-Box of polycomb protein.  The VEFS-Box
           (VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal region of
           these proteins, characterized by an acidic cluster and a
           tryptophan/methionine-rich sequence, the acidic-W/M
           domain. Some of these sequences are associated with a
           zinc-finger domain about 100 residues towards the
           N-terminus. This protein is one of the polycomb cluster
           of proteins which control HOX gene transcription as it
           functions in heterochromatin-mediated repression.
          Length = 141

 Score =  105 bits (265), Expect = 1e-30
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 35  DDADTDGHRPVVSGHNRLYHHTITCLPVLPKEM--DQDSDDQKDPKWLQTKTKMMIDEFT 92
             A+    R  +  H R + H+ TC P+ P+E+  D+DS+D+ D  WL  +T+ M+DEF 
Sbjct: 4   LSAERSDQRSYILLHKRQFFHSHTCQPMHPEEVMSDRDSEDEVDDDWLDLETRQMLDEFV 63

Query: 93  DVNEGEKELMKLWNLHVMKYG 113
           DVNEGEK +MKLWN  V K  
Sbjct: 64  DVNEGEKRIMKLWNSFVRKQR 84


>gnl|CDD|148837 pfam07458, SPAN-X, Sperm protein associated with nucleus, mapped
          to X chromosome.  This family contains human sperm
          proteins associated with the nucleus and mapped to the
          X chromosome (SPAN-X) (approximately 100 residues
          long). SPAN-X proteins are cancer-testis antigens
          (CTAs), and thus represent potential targets for cancer
          immunotherapy because they are widely distributed in
          tumours but not in normal tissues, except testes. They
          are highly insoluble, acidic, and polymorphic.
          Length = 97

 Score = 28.7 bits (64), Expect = 0.35
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 7  TSDGSELLVYYPRRHRKHSMSEFLNDMA 34
          TS+ S +LV   RR++K S ++  ND +
Sbjct: 45 TSEYSTILVLCYRRNKKISSNQLENDQS 72


>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
          Length = 672

 Score = 27.5 bits (61), Expect = 1.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 51  RLYH-HTITC-------LPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELM 102
            LY  H   C       L +LP  + Q +++ ++ +W      +++DE+ D N  + EL+
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRE-RWQNKIRYLLVDEYQDTNTSQYELV 227

Query: 103 KL 104
           KL
Sbjct: 228 KL 229


>gnl|CDD|153425 cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator
           and related proteins.  The WGR domain is found in the
           putative Escherichia coli molybdate metabolism regulator
           and related bacterial proteins, as well as in various
           other bacterial proteins of unknown function. It has
           been called WGR after the most conserved central motif
           of the domain. The domain appears to occur in
           single-domain proteins and in a variety of domain
           architectures, together with ATP-dependent DNA ligase
           domains, WD40 repeats, leucine-rich repeats, and other
           domains. It has been proposed to function as a nucleic
           acid binding domain.
          Length = 74

 Score = 26.0 bits (58), Expect = 2.2
 Identities = 7/23 (30%), Positives = 8/23 (34%)

Query: 82  TKTKMMIDEFTDVNEGEKELMKL 104
           TK +     F    E  K   KL
Sbjct: 40  TKGQSRTKTFDSEEEALKAAEKL 62


>gnl|CDD|223925 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
           [Nucleotide transport and metabolism].
          Length = 203

 Score = 26.6 bits (59), Expect = 2.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 10  GSELLVYYPRRHRK 23
           G EL +Y+PR+HRK
Sbjct: 109 GKELAIYHPRKHRK 122


>gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep.  Designed to
           identify rep members of the uvrD/rep subfamily [DNA
           metabolism, DNA replication, recombination, and repair].
          Length = 664

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 59  CLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKL 104
            LP L  +     +++   +W      +++DE+ D N  + EL+KL
Sbjct: 187 LLPTLLLQ----QNEEVRNRWQNKIRYLLVDEYQDTNTSQYELVKL 228


>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
           1-carboxyvinyltransferase; Validated.
          Length = 417

 Score = 26.1 bits (59), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 30  LNDMADDADTDGHRPVVSGHNRLY 53
           L  M  D + DGH  VV G  +L 
Sbjct: 339 LIRMGADIEVDGHTAVVRGVEKLS 362


>gnl|CDD|133132 cd06601, GH31_lyase_GLase, GLases (alpha-1,4-glucan lyases) are
           glycosyl hydrolase family 31 (GH31) enzymes that degrade
           alpha-1,4-glucans and maltooligosaccharides via a
           nonhydrolytic pathway to yield 1,5-D-anhydrofructose
           from the nonreducing end. GLases cleave the bond between
           C1 and O1 of the nonreducing sugar residue of
           alpha-glucans to generate a monosaccharide product with
           a double bond between C1 and C2. This family corresponds
           to subgroup 2 in the Ernst et al classification of GH31
           enzymes.
          Length = 332

 Score = 25.9 bits (57), Expect = 5.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 86  MMIDEFTDVNEGEKELMKLWNLHV 109
           ++ D+  + N   K  ++LWNL+ 
Sbjct: 151 LVTDDSYENNVKRKPAIELWNLYS 174


>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B.
           This model represents a paralogous family of Plasmodium
           yoelii genes preferentially located in the subtelomeric
           regions of the chromosomes. There are no obvious
           homologs to these genes in any other organism.
          Length = 255

 Score = 25.6 bits (56), Expect = 6.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 70  DSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNL---HVMKY 112
           D+D+Q D       T  + ++F D N+ +KE+  L N+   H+ K+
Sbjct: 50  DADNQFDLNEFYQSTLSLANQFNDCNDDDKEIAHLRNIIDSHIKKH 95


>gnl|CDD|227160 COG4823, AbiF, Abortive infection bacteriophage resistance protein
           [Defense mechanisms].
          Length = 299

 Score = 25.2 bits (55), Expect = 8.9
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 19/88 (21%)

Query: 43  RPVVSGHNRLYHHTITCLPVLPKEMDQDSDD-------------QKDPKWLQTKTKMMID 89
           R + + + RL++ TIT +P LP    + ++                  +W    T +   
Sbjct: 207 RNICAHNGRLWNRTITVIPKLPNGTAKINNKRIFSVILIFKYLIVDQTEWEIFVTLIEEL 266

Query: 90  EFTDVNE------GEKELMKLWNLHVMK 111
              D         G  E  K   +  + 
Sbjct: 267 IQKDQENIELEMIGLPETYKELLIDRVV 294


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,686,741
Number of extensions: 458528
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 12
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)