RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6841
         (113 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.82
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 21/106 (19%)

Query: 21  HRKHSMSEFLNDMADDAD----TDGHRPVVSGH------------NRLYHHTITCLPVLP 64
             K  +S F +   D+ D     D  + ++S              +         L    
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQ 75

Query: 65  KEMDQ---DSDDQKDPKWLQTKTKM-MIDEFTDVNEGEKELMKLWN 106
           +EM Q   +   + + K+L +  K              ++  +L+N
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 6.6
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 64   PKEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLHVMKY 112
            P  +      +K  +  +  + M+ +   D     +++ K  N H   Y
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717


>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
          serine/threonine-protein kinase, minibrain homolog,
          nucleotide-binding, transferase; HET: PTR D15 P6G;
          2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
          Length = 382

 Score = 25.1 bits (55), Expect = 7.0
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 15 VYYPRRHRKHSMSEFLNDMADDADTDGHRPVVSG 48
          +Y+          +  ND  DD   +    V +G
Sbjct: 18 LYFQSMSSHKKERKVYNDGYDDD--NYDYIVKNG 49


>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
           13124, center for structural genomics of infectious DI
           csgid; 1.85A {Clostridium perfringens}
          Length = 351

 Score = 24.7 bits (54), Expect = 7.9
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 65  KEMDQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWN 106
           KE+    ++ K+  +        + +F  VN    + +  WN
Sbjct: 306 KEVKLSEEETKNLTYGPVVDNAKVIDFKFVNSVMDQWVNNWN 347


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,774,933
Number of extensions: 89634
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 10
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)