BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6842
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila melanogaster GN=Su(z)12 PE=1
SV=1
Length = 900
Score = 120 bits (301), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/80 (65%), Positives = 64/80 (80%)
Query: 60 DDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDV 119
D+ + R ++GHNRLYHHT TCLPV PKE+D DS+ + DP WL+ KT MIDEF+DV
Sbjct: 511 DEDEISNQRSYITGHNRLYHHTETCLPVHPKELDIDSEGESDPLWLRQKTIQMIDEFSDV 570
Query: 120 NEGEKELMKLWNLHVMKYGW 139
NEGEKELMKLWNLHVM++G+
Sbjct: 571 NEGEKELMKLWNLHVMRHGF 590
>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2
Length = 741
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 73/99 (73%)
Query: 59 ADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTD 118
++D + + R SGHNRLY H+ TCLP+ P+EM+ DS+D+KDP+WL+ KT I+EF+D
Sbjct: 548 SEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSD 607
Query: 119 VNEGEKELMKLWNLHVMKYGWGREKELMKLWNLHVMKYG 157
VNEGEKE+MKLWNLHVMK+G+ + ++ L V YG
Sbjct: 608 VNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYG 646
>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3
Length = 739
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 73/99 (73%)
Query: 59 ADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTD 118
++D + + R SGHNRLY H+ TCLP+ P+EM+ DS+D+KDP+WL+ KT I+EF+D
Sbjct: 546 SEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSD 605
Query: 119 VNEGEKELMKLWNLHVMKYGWGREKELMKLWNLHVMKYG 157
VNEGEKE+MKLWNLHVMK+G+ + ++ L V YG
Sbjct: 606 VNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYG 644
>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1
Length = 700
Score = 117 bits (294), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/99 (53%), Positives = 73/99 (73%)
Query: 59 ADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTD 118
++D + + R SGHNRLY H+ TCLP+ P+EMD DS+D+KDP+WL+ KT I+EF+D
Sbjct: 503 SEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMDVDSEDEKDPEWLREKTITQIEEFSD 562
Query: 119 VNEGEKELMKLWNLHVMKYGWGREKELMKLWNLHVMKYG 157
VNEGEKE+MK+WNLHVMK+G+ + ++ L V YG
Sbjct: 563 VNEGEKEVMKMWNLHVMKHGFIADNQMNHGCMLFVDNYG 601
>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN=suz12b PE=2 SV=1
Length = 682
Score = 117 bits (294), Expect = 3e-26, Method: Composition-based stats.
Identities = 49/87 (56%), Positives = 69/87 (79%)
Query: 59 ADDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTD 118
++D + + R VSGHNRLY H+ +C+P+ P+EM+ DS+D++DP+WLQ KT I+EFTD
Sbjct: 506 SEDGEPEQQRTYVSGHNRLYFHSDSCMPLRPQEMEVDSEDERDPEWLQEKTTTQIEEFTD 565
Query: 119 VNEGEKELMKLWNLHVMKYGWGREKEL 145
VNEGEKE+MKLWNLHVMK G+ + ++
Sbjct: 566 VNEGEKEVMKLWNLHVMKNGFIADNQM 592
>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1
Length = 657
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 74/101 (73%)
Query: 60 DDADTDGHRPVVSGHNRLYHHTITCLPVLPKEMDQDSDDQKDPKWLQTKTKMMIDEFTDV 119
+D + + R +SGHNRLY H+ +C P+ P+EM+ DS+D++DP WL+ KT M I+EFTDV
Sbjct: 512 EDGEQEQQRTYISGHNRLYFHSDSCTPLRPQEMEVDSEDERDPDWLREKTAMQIEEFTDV 571
Query: 120 NEGEKELMKLWNLHVMKYGWGREKELMKLWNLHVMKYGYIV 160
NEGEKE+MKLWNL VMK+G+ + ++ + V ++G I+
Sbjct: 572 NEGEKEIMKLWNLLVMKHGFIADNQMNQACMSFVEQHGTIM 612
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3
Length = 755
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 76 RLYHHTITCLPVLPKEM--DQDSDDQKDPKWLQTKTKMMIDEFTDVNEGEKELMKLWNLH 133
R ++H+ T P+ +++ ++DS+++ D L ++ ++ V++ EK M LWN+
Sbjct: 606 RQFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIF 665
Query: 134 VMK 136
V K
Sbjct: 666 VRK 668
>sp|Q8W5B1|VRN2_ARATH Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana
GN=VRN2 PE=1 SV=2
Length = 440
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 110 KMMIDEFTDVNEGEKELMKLWNLHVMK 136
+ M+D+F DVN+ EK+ M LWN V K
Sbjct: 303 RQMLDDFVDVNKDEKQFMHLWNSFVRK 329
>sp|Q8L6Y4|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana
GN=EMF2 PE=1 SV=2
Length = 631
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 110 KMMIDEFTDVNEGEKELMKLWNLHVMK 136
+ M+D+F DV + EK++M +WN V K
Sbjct: 541 RRMLDDFVDVTKDEKQMMHMWNSFVRK 567
>sp|Q49ZN0|FDHL_STAS1 Putative formate dehydrogenase SSP0601 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP0601 PE=3 SV=1
Length = 984
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 40 HGANEQSKGIMTDLKLNDMAD--DADTDGHRPVVS-----GHNRLYHHTITCLPVLPKEM 92
HG + G + DL++ DM +T PV++ GH +LY++T+ + EM
Sbjct: 404 HGGD---SGSIEDLEIADMVVLIGTNTAEAHPVIASRIKRGH-KLYNNTLNVFDIRKHEM 459
Query: 93 DQDSDDQKDPK------WLQTKTKMMIDE 115
+ +D+ PK WL TK +IDE
Sbjct: 460 AERADNFYQPKPGTDLVWLSAVTKYIIDE 488
>sp|Q18KN8|PTH_HALWD Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (strain DSM 16790)
GN=pth PE=3 SV=1
Length = 112
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 54 KLNDMADDADTDGHRPVV---SGHNRLYHHTITCLPVLPKEMDQDSDDQKD 101
KL +AD+A+ DG V +GH +L T+TC+ + P DSD+ D
Sbjct: 58 KLFQLADEAERDGIPHAVVRDAGHTQLEPGTVTCIAIGP-----DSDENID 103
>sp|Q7KWR7|H2BV2_DICDI Histone H2B.v2 OS=Dictyostelium discoideum GN=H2Bv2 PE=3 SV=1
Length = 474
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 56 NDMADDADTDGHRPVVSGHNRLYHHTIT-CLPV 87
N+++DD+D +G ++ +N +Y H ++ C P+
Sbjct: 121 NELSDDSDVEGFE-IIPNNNNIYSHDVSLCFPI 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,742,196
Number of Sequences: 539616
Number of extensions: 3269618
Number of successful extensions: 6299
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6278
Number of HSP's gapped (non-prelim): 34
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)